#!/bin/sh #------------------------------------------------------------------------------ # ========= | # \\ / F ield | OpenFOAM: The Open Source CFD Toolbox # \\ / O peration | # \\ / A nd | Copyright (C) 2011-2015 OpenFOAM Foundation # \\/ M anipulation | #------------------------------------------------------------------------------- # License # This file is part of OpenFOAM. # # OpenFOAM is free software: you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # OpenFOAM is distributed in the hope that it will be useful, but WITHOUT # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or # FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License # for more details. # # You should have received a copy of the GNU General Public License # along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>. # # Script # foamJob # # Description # Run an OpenFOAM job in background. # Redirects the output to 'log' in the case directory. # #------------------------------------------------------------------------------ usage() { exec 1>&2 while [ "$#" -ge 1 ]; do echo "$1"; shift; done cat<<USAGE Usage: ${0##*/} [OPTION] <application> ... options: -case <dir> specify alternative case directory, default is the cwd -parallel parallel run of processors -screen also sends output to screen -append append to log file instead of overwriting it -wait wait for execution to complete (when not using -screen) -version <ver> specify an alternative OpenFOAM version -help print the usage * run an OpenFOAM job in background. Redirects the output to 'log' in the case directory USAGE exit 1 } # Echo strings that have single quotes echoArgs() { addSpace="" for stringItem in "$@"; do echo -n "${addSpace}" if [ "${stringItem##* }" = "$stringItem" ] then echo -n "$stringItem" addSpace=" " else echo -n "'$stringItem'" addSpace=" " fi done unset stringItem addSpace } unset version # Replacement for possibly buggy 'which' findExec() { case "$1" in */*) if [ -x "$1" ] then echo "$1" return 0 fi ;; esac oldIFS=$IFS IFS=':' for d in $PATH do # echo "testing: $d/$1" 1>&2 if [ -x "$d/$1" -a ! -d "$d/$1" ] then # echo "Found exec: $d/$1" 1>&2 IFS=$oldIFS echo "$d/$1" return 0 fi done IFS=$oldIFS echo "" return 1 } # Main script #~~~~~~~~~~~~ unset parallelOpt screenOpt waitOpt # Parse options while [ "$#" -gt 0 ] do case "$1" in -h | -help) usage ;; -case) [ "$#" -ge 2 ] || usage "'$1' option requires an argument" cd "$2" 2>/dev/null || usage "directory does not exist: '$2'" shift 2 ;; -p | -parallel) parallelOpt=true shift ;; -s | -screen) screenOpt=true shift ;; -a | -append) appendOpt=true shift ;; -w | -wait) waitOpt=true shift ;; -v | -version) [ "$#" -ge 2 ] || usage "'$1' option requires an argument" version="$2" shift 2 ;; --) shift break ;; -*) usage "invalid option '$1'" ;; *) break ;; esac done [ "$#" -ge 1 ] || usage "No application specified" # Use foamExec for a specified version # Also need foamExec for remote (parallel) runs if [ -n "$version" -o "$parallelOpt" = true ] then # When possible, determine if application even exists if [ -z "$version" ] then findExec $1 >/dev/null || usage "Application '$1' not found" fi # Use foamExec for dispatching APPLICATION=`findExec foamExec` || usage "'foamExec' not found" [ -n "$version" ] && APPLICATION="$APPLICATION -version $version" # Attempt to preserve the installation directory 'FOAM_INST_DIR' if [ -d "$FOAM_INST_DIR" ] then APPLICATION="$APPLICATION -prefix $FOAM_INST_DIR" fi else APPLICATION=`findExec $1` || usage "Application '$1' not found" echo "Application : $1" shift fi if [ "$parallelOpt" = true ] then # parallel # ~~~~~~~~ # # Check if the case decomposed # if [ -r "processor0" ] then NPROCS="`/bin/ls -1d processor* | wc -l`" else echo "Case is not currently decomposed" if [ -r system/decomposeParDict ] then echo "system/decomposeParDict exists" echo "Try decomposing with \"foamJob decomposePar\"" exit 1 else echo "Cannot find system/decomposeParDict file required to decompose the case for parallel running." echo "Please consult the User Guide for details of parallel running" exit 1 fi fi # # Find mpirun # mpirun=`findExec mpirun` || usage "'mpirun' not found" mpiopts="-np $NPROCS" # # Check if the machine ready to run parallel # echo "Parallel processing using $WM_MPLIB with $NPROCS processors" case "$WM_MPLIB" in *OPENMPI) # add hostfile info for hostfile in \ hostfile \ machines \ system/hostfile \ system/machines \ ; do if [ -r $hostfile ] then mpiopts="$mpiopts -hostfile $hostfile" break fi done # # Send FOAM_SETTINGS to parallel processes, so that the proper # definitions are sent as well. # mpiopts="$mpiopts -x FOAM_SETTINGS" ;; esac # # Run (in parallel) # if [ "$screenOpt" = true ] then [ "$appendOpt" = true ] && teeOpts=" -a" echo "Executing: $mpirun $mpiopts $APPLICATION $(echoArgs "$@") -parallel | tee $teeOpts log" $mpirun $mpiopts $APPLICATION "$@" -parallel | tee $teeOpts log else if [ "$appendOpt" = true ] then echo "Executing: $mpirun $mpiopts $APPLICATION $(echoArgs "$@") -parallel >> log 2>&1" $mpirun $mpiopts $APPLICATION "$@" -parallel >> log 2>&1 & else echo "Executing: $mpirun $mpiopts $APPLICATION $(echoArgs "$@") -parallel > log 2>&1" $mpirun $mpiopts $APPLICATION "$@" -parallel > log 2>&1 & fi pid=$! if [ "$waitOpt" = true ] then wait $pid fi fi else # # Run (on single processor) # if [ "$screenOpt" = true ] then [ "$appendOpt" = true ] && teeOpts=" -a" echo "Executing: $APPLICATION $(echoArgs "$@") | tee $teeOpts log &" $APPLICATION "$@" | tee $teeOpts log & wait $! else if [ "$appendOpt" = true ] then echo "Executing: $APPLICATION $(echoArgs "$@") >> log 2>&1 &" $APPLICATION "$@" >> log 2>&1 & else echo "Executing: $APPLICATION $(echoArgs "$@") > log 2>&1 &" $APPLICATION "$@" > log 2>&1 & fi pid=$! if [ "$waitOpt" = true ] then wait $pid fi fi fi #------------------------------------------------------------------------------