diff --git a/applications/utilities/mesh/generation/snappyHexMesh/snappyHexMesh.C b/applications/utilities/mesh/generation/snappyHexMesh/snappyHexMesh.C index 7b998241d65bb686f7e2f22cfc751aca95b86587..ed0e635787ad1906f4c0c230423caf2943fd8008 100644 --- a/applications/utilities/mesh/generation/snappyHexMesh/snappyHexMesh.C +++ b/applications/utilities/mesh/generation/snappyHexMesh/snappyHexMesh.C @@ -901,33 +901,42 @@ int main(int argc, char *argv[]) // Read decomposePar dictionary dictionary decomposeDict; + if (Pstream::parRun()) { - if (Pstream::parRun()) - { - fileName decompDictFile; - args.optionReadIfPresent("decomposeParDict", decompDictFile); + fileName decompDictFile; + args.optionReadIfPresent("decomposeParDict", decompDictFile); + + // A demand-driven decompositionMethod can have issues finding + // an alternative decomposeParDict location. - decomposeDict = IOdictionary + IOdictionary* dictPtr = new IOdictionary + ( + decompositionModel::selectIO ( - decompositionModel::selectIO + IOobject ( - IOobject - ( - "decomposeParDict", - runTime.system(), - mesh, - IOobject::MUST_READ_IF_MODIFIED, - IOobject::NO_WRITE - ), - decompDictFile - ) - ); - } - else - { - decomposeDict.add("method", "none"); - decomposeDict.add("numberOfSubdomains", 1); - } + "decomposeParDict", + runTime.system(), + runTime, + IOobject::MUST_READ, + IOobject::NO_WRITE + ), + decompDictFile + ) + ); + + // Store it on the object registry, but to be found it must also + // have the expected "decomposeParDict" name. + + dictPtr->rename("decomposeParDict"); + runTime.store(dictPtr); + + decomposeDict = *dictPtr; + } + else + { + decomposeDict.add("method", "none"); + decomposeDict.add("numberOfSubdomains", 1); } diff --git a/applications/utilities/parallelProcessing/decomposePar/decomposePar.C b/applications/utilities/parallelProcessing/decomposePar/decomposePar.C index 4eea56f1c0fa6290bfeffe8adbee281307b3353a..48cfbac21f09cf45ae823b0ecf214e9a80fc93ee 100644 --- a/applications/utilities/parallelProcessing/decomposePar/decomposePar.C +++ b/applications/utilities/parallelProcessing/decomposePar/decomposePar.C @@ -347,7 +347,7 @@ int main(int argc, char *argv[]) runTime.time().system(), regionDir, // use region if non-standard runTime, - IOobject::MUST_READ_IF_MODIFIED, + IOobject::MUST_READ, IOobject::NO_WRITE, false ), diff --git a/applications/utilities/preProcessing/mapFields/mapFields.C b/applications/utilities/preProcessing/mapFields/mapFields.C index 35d4faccc6072e7ccd93e5ae55ec8f59a2587ebc..8e9f95352237af642e43b1985b8601652f4e2fb9 100644 --- a/applications/utilities/preProcessing/mapFields/mapFields.C +++ b/applications/utilities/preProcessing/mapFields/mapFields.C @@ -69,7 +69,7 @@ int readNumProcs dictName, runTime.system(), runTime, - IOobject::MUST_READ_IF_MODIFIED, + IOobject::MUST_READ, IOobject::NO_WRITE, false ), diff --git a/applications/utilities/surface/surfaceBooleanFeatures/PolyhedronReader/Make/options b/applications/utilities/surface/surfaceBooleanFeatures/PolyhedronReader/Make/options index 424f89a8aba98e7eae709757dcc68d0a3471ec1e..367e9e2e3cfd19e541ae01dd4f6845665ffd157e 100644 --- a/applications/utilities/surface/surfaceBooleanFeatures/PolyhedronReader/Make/options +++ b/applications/utilities/surface/surfaceBooleanFeatures/PolyhedronReader/Make/options @@ -20,5 +20,6 @@ EXE_INC = \ -I/usr/include/Qt LIB_LIBS = \ + -L$(CGAL_ARCH_PATH)/lib \ -L$(CGAL_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ -ltriSurface diff --git a/applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C b/applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C index d478f8ab4071577eec16612442e90937e956eca9..219a4552090ae138d363cffc6d64b4faeca9e336 100644 --- a/applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C +++ b/applications/utilities/surface/surfaceRedistributePar/surfaceRedistributePar.C @@ -161,7 +161,10 @@ int main(int argc, char *argv[]) fileName decompDictFile; args.optionReadIfPresent("decomposeParDict", decompDictFile); - IOdictionary* dict = new IOdictionary + // A demand-driven decompositionMethod can have issues finding + // an alternative decomposeParDict location. + + IOdictionary* dictPtr = new IOdictionary ( decompositionModel::selectIO ( @@ -170,18 +173,18 @@ int main(int argc, char *argv[]) "decomposeParDict", runTime.system(), runTime, - IOobject::MUST_READ_IF_MODIFIED, + IOobject::MUST_READ, IOobject::NO_WRITE ), decompDictFile ) ); - // The object must have the expected "decomposeParDict" name. - // This also implies that it cannot be changed during the run. - dict->rename("decomposeParDict"); + // Store it on the object registry, but to be found it must also + // have the expected "decomposeParDict" name. - runTime.store(dict); + dictPtr->rename("decomposeParDict"); + runTime.store(dictPtr); } // Determine mesh bounding boxes: diff --git a/bin/tools/RunFunctions b/bin/tools/RunFunctions index f99ab370b509b491ab5e957b153386c1e481ceb4..c3c6be894831806843952b5562a15d0feb0b0326 100755 --- a/bin/tools/RunFunctions +++ b/bin/tools/RunFunctions @@ -56,15 +56,17 @@ isTest() # getNumberOfProcessors() { + local dict="${1:-system/decomposeParDict}" + # Re-use positional parameters for automatic whitespace elimination - set -- $(foamDictionary -entry numberOfSubdomains -value "${1:-system/decomposeParDict}") + set -- $(foamDictionary -entry numberOfSubdomains -value "$dict" 2>/dev/null) if [ "$#" -eq 1 ] then echo "$1" else - echo "Error retrieving 'numberOfSubdomains' from decomposeParDict" 1>&2 - echo 1 + echo "Warning no 'numberOfSubdomains' in '$dict'" 1>&2 + echo 1 # serial as fallback return 1 fi } diff --git a/etc/config.csh/CGAL b/etc/config.csh/CGAL index 84bc71bda6099e176d517c47763a95398a6d51d4..0caa0c51d7099635dee75c5a4b7731e4d9112096 100644 --- a/etc/config.csh/CGAL +++ b/etc/config.csh/CGAL @@ -50,8 +50,8 @@ # #------------------------------------------------------------------------------ -set boost_version=boost_1_61_0 -set cgal_version=CGAL-4.8 +set boost_version=boost_1_62_0 +set cgal_version=CGAL-4.9 setenv BOOST_ARCH_PATH $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$boost_version setenv CGAL_ARCH_PATH $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cgal_version diff --git a/etc/config.csh/FFTW b/etc/config.csh/FFTW index 78d24e17b10babd88ffaa80f18a058c0dd157a8a..515c429e66c7e619ce90142892ddde2d17bf8052 100644 --- a/etc/config.csh/FFTW +++ b/etc/config.csh/FFTW @@ -22,7 +22,7 @@ # along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>. # # File -# etc/config.sh/FFTW +# etc/config.csh/FFTW # # Description # Setup file for FFTW include/libraries. @@ -48,7 +48,7 @@ # #------------------------------------------------------------------------------ -set fftw_version=fftw-3.3.4 +set fftw_version=fftw-3.3.5 setenv FFTW_ARCH_PATH $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$fftw_version diff --git a/etc/config.csh/mpi b/etc/config.csh/mpi index 974555857aacd833c58b40f6f453b8cb7d307077..876357d43572a2f3b87d5aa8be0d981227b134ee 100644 --- a/etc/config.csh/mpi +++ b/etc/config.csh/mpi @@ -51,7 +51,7 @@ case SYSTEMOPENMPI: breaksw case OPENMPI: - setenv FOAM_MPI openmpi-1.10.2 + setenv FOAM_MPI openmpi-1.10.4 # Optional configuration tweaks: _foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config.csh/openmpi` diff --git a/etc/config.csh/paraview b/etc/config.csh/paraview index 0fea6e0c07a1ff1fde18e450095c8452cf37a6cd..50973a93d47b1e90eb7c7370c9091938102d81bb 100644 --- a/etc/config.csh/paraview +++ b/etc/config.csh/paraview @@ -51,7 +51,7 @@ # #------------------------------------------------------------------------------ -setenv ParaView_VERSION 5.1.2 +setenv ParaView_VERSION 5.2.0 setenv ParaView_MAJOR detect # Automatically determine major version set cmake_version=cmake-system @@ -63,12 +63,10 @@ if ( ! $?ParaView_DIR ) setenv ParaView_DIR set cleaned=`$WM_PROJECT_DIR/bin/foamCleanPath "$PATH" "$ParaView_DIR $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/cmake- $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/paraview-"` if ( $status == 0 ) setenv PATH $cleaned -# Environment for ThirdParty cmake -unsetenv CMAKE_HOME +# ThirdParty cmake set cmake=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cmake_version -if ( -r $cmake ) then - setenv CMAKE_HOME $cmake - setenv PATH ${CMAKE_HOME}/bin:${PATH} +if ( -r $cmake/bin/cmake ) then + _foamAddPath $cmake/bin endif # Evaluate command-line parameters for ParaView @@ -112,9 +110,9 @@ if ( $?ParaView_VERSION ) then set pvLibDir=${ParaView_DIR}/lib/$pvMajor set pvPython=$ParaView_DIR/Utilities/VTKPythonWrapping + setenv PATH ${ParaView_DIR}/bin:${PATH} setenv ParaView_INCLUDE_DIR $ParaView_DIR/include/$pvMajor setenv PV_PLUGIN_PATH $FOAM_LIBBIN/$pvMajor - setenv PATH ${ParaView_DIR}/bin:${PATH} setenv LD_LIBRARY_PATH "${pvLibDir}:${LD_LIBRARY_PATH}" # Add in python libraries if required diff --git a/etc/config.csh/unset b/etc/config.csh/unset index a1ef724b3c07f964219176f6d040f0fc8d332caa..88bdd3454eff250015cf83b34161849ee94dded9 100644 --- a/etc/config.csh/unset +++ b/etc/config.csh/unset @@ -3,7 +3,7 @@ # \\ / F ield | OpenFOAM: The Open Source CFD Toolbox # \\ / O peration | # \\ / A nd | Copyright (C) 2011-2016 OpenFOAM Foundation -# \\/ M anipulation | +# \\/ M anipulation | Copyright (C) 2016 OpenCFD Ltd. #------------------------------------------------------------------------------ # License # This file is part of OpenFOAM. @@ -119,7 +119,6 @@ unsetenv OPAL_PREFIX # Unset Ensight/ParaView-related environment variables unsetenv ENSIGHT9_READER -unsetenv CMAKE_HOME unsetenv ParaView_DIR unsetenv ParaView_INCLUDE_DIR unsetenv ParaView_MAJOR @@ -129,12 +128,15 @@ unsetenv PV_PLUGIN_PATH #------------------------------------------------------------------------------ # unset other ThirdParty environment variables +unsetenv ADIOS_ARCH_PATH unsetenv BOOST_ARCH_PATH unsetenv CCMIO_ARCH_PATH unsetenv CGAL_ARCH_PATH unsetenv FFTW_ARCH_PATH +unsetenv GPERFTOOLS_ARCH_PATH unsetenv GMP_ARCH_PATH unsetenv MPFR_ARCH_PATH +unsetenv METIS_ARCH_PATH unsetenv SCOTCH_ARCH_PATH #------------------------------------------------------------------------------ @@ -174,7 +176,6 @@ unalias wm32 unalias wmSP unalias wmDP -unalias wmRefresh unalias wmUnset unalias wmSchedOn @@ -191,6 +192,7 @@ unalias util unalias tut unalias run +unalias wmRefresh unalias foamVersion unalias foamPV diff --git a/etc/config.sh/CGAL b/etc/config.sh/CGAL index 044327109f64ec5c4762546ff1214e3c04b2c2fb..5f9c64b1b9f534b96c5ee4655be63507e2bd5eb2 100644 --- a/etc/config.sh/CGAL +++ b/etc/config.sh/CGAL @@ -49,8 +49,8 @@ # - the LD_LIBRARY_PATH is not adjusted. #------------------------------------------------------------------------------ -boost_version=boost_1_61_0 -cgal_version=CGAL-4.8 +boost_version=boost_1_62_0 +cgal_version=CGAL-4.9 export BOOST_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$boost_version export CGAL_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cgal_version diff --git a/etc/config.sh/FFTW b/etc/config.sh/FFTW index f3cb4ea70ee775ef7e4da0f1800c00833e099f6a..e3a6fee2fd6e03ed01cf605766ede045d27abdc0 100644 --- a/etc/config.sh/FFTW +++ b/etc/config.sh/FFTW @@ -47,7 +47,7 @@ # - the LD_LIBRARY_PATH is not adjusted. #------------------------------------------------------------------------------ -fftw_version=fftw-3.3.4 +fftw_version=fftw-3.3.5 export FFTW_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$fftw_version diff --git a/etc/config.sh/gperftools b/etc/config.sh/gperftools index 06604630377dc675a9b858168757c2a7e7c05581..d42b46df21576f006843b555a39f3ab46e9ece54 100644 --- a/etc/config.sh/gperftools +++ b/etc/config.sh/gperftools @@ -3,7 +3,7 @@ # \\ / F ield | OpenFOAM: The Open Source CFD Toolbox # \\ / O peration | # \\ / A nd | Copyright (C) 2012-2016 OpenFOAM Foundation -# \\/ M anipulation | +# \\/ M anipulation | Copyright (C) 2016 OpenCFD Ltd. #------------------------------------------------------------------------------ # License # This file is part of OpenFOAM. @@ -25,17 +25,54 @@ # etc/config.sh/gperftools # # Description -# Setup file for gperftools binaries libraries. +# Setup file for gperftools binaries and libraries. +# Sourced from OpenFOAM-<VERSION>/etc/bashrc # +# If using system-wide installations, use the following settings: +# +# gperftools_version=gperftools-system +# +# If the system gperftools is unusable (eg, too old) and you don't +# have or want a ThirdParty installation: +# +# gperftools_version=gperftools-none +# +# If using a central installation, but not located under ThirdParty: +# - specify gperftools-system +# - provide full paths for GPERFTOOLS_ARCH_PATH +# +# Note +# When _foamAddLib is unset (eg, called from makeGperftools): +# - gperftools_version variable are retained. +# - the LD_LIBRARY_PATH and PATH are not adjusted. #------------------------------------------------------------------------------ -version=svn -gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER +gperftools_version=gperftools-2.5 + +GPERFTOOLS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$gperftools_version + +#------------------------------------------------------------------------------ +if [ "$FOAM_VERBOSE" -a "$PS1" ] +then + echo "Using gperftools ($gperftools_version) -> $GPERFTOOLS_ARCH_PATH" 1>&2 +fi + +if type _foamAddLib > /dev/null 2>&1 # normal sourcing +then + + # If GPERFTOOLS_ARCH_PATH does not end with '-system' or '-none', + # it is located within ThirdParty, or a central installation + # outside of ThirdParty and must be added to the lib-path. + + ending="${GPERFTOOLS_ARCH_PATH##*-}" + if [ "$ending" != none -a "$ending" != system ] + then + _foamAddLib $GPERFTOOLS_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH + _foamAddPath $GPERFTOOLS_ARCH_PATH/bin + fi -GPERFTOOLS_VERSION=gperftools-$version -GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION + unset gperftools_version ending -export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH -export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH +fi #------------------------------------------------------------------------------ diff --git a/etc/config.sh/mpi b/etc/config.sh/mpi index d41751432e1d24aad15ed3ac3b3fa33d7dda0692..d8872685888d5b9c90b127a243d55038757e59d3 100644 --- a/etc/config.sh/mpi +++ b/etc/config.sh/mpi @@ -54,7 +54,7 @@ SYSTEMOPENMPI) ;; OPENMPI) - export FOAM_MPI=openmpi-1.10.2 + export FOAM_MPI=openmpi-1.10.4 # Optional configuration tweaks: _foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config.sh/openmpi` diff --git a/etc/config.sh/paraview b/etc/config.sh/paraview index c9b8621d5251c93124f5882d38b12e87a33cc2f5..99a379422c78c39c09088c75f9ff8b0dead9be2b 100644 --- a/etc/config.sh/paraview +++ b/etc/config.sh/paraview @@ -51,7 +51,7 @@ # #------------------------------------------------------------------------------ -ParaView_VERSION=5.1.2 +ParaView_VERSION=5.2.0 ParaView_MAJOR=detect # Automatically determine major version cmake_version=cmake-system @@ -66,14 +66,11 @@ cleaned=$($WM_PROJECT_DIR/bin/foamCleanPath "$PATH" \ ) \ && PATH="$cleaned" -# Environment for ThirdParty cmake -unset CMAKE_HOME +# ThirdParty cmake cmake=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cmake_version -if [ -r $cmake ] +if [ -r $cmake/bin/cmake ] then - export CMAKE_HOME=$cmake - export CMAKE_ROOT=$cmake - export PATH=$CMAKE_HOME/bin:$PATH + _foamAddPath $cmake/bin fi # Evaluate command-line parameters for ParaView @@ -125,9 +122,9 @@ then pvLibDir=$ParaView_DIR/lib/$pvMajor pvPython=$ParaView_DIR/Utilities/VTKPythonWrapping + export PATH=$ParaView_DIR/bin:$PATH export ParaView_INCLUDE_DIR=$ParaView_DIR/include/$pvMajor export PV_PLUGIN_PATH=$FOAM_LIBBIN/$pvMajor - export PATH=$ParaView_DIR/bin:$PATH export LD_LIBRARY_PATH=$pvLibDir:$LD_LIBRARY_PATH # Add in python libraries if required diff --git a/etc/config.sh/unset b/etc/config.sh/unset index 114f313a3995b51dd567ed16236075000384422e..e7b834baeb784621e7d34587249c79f1b2c91e7f 100644 --- a/etc/config.sh/unset +++ b/etc/config.sh/unset @@ -3,7 +3,7 @@ # \\ / F ield | OpenFOAM: The Open Source CFD Toolbox # \\ / O peration | # \\ / A nd | Copyright (C) 2011-2016 OpenFOAM Foundation -# \\/ M anipulation | +# \\/ M anipulation | Copyright (C) 2016 OpenCFD Ltd. #------------------------------------------------------------------------------ # License # This file is part of OpenFOAM. @@ -115,7 +115,6 @@ fi # Unset Ensight/ParaView-related environment variables unset ENSIGHT9_READER -unset CMAKE_HOME unset ParaView_DIR unset ParaView_INCLUDE_DIR unset ParaView_MAJOR @@ -125,12 +124,15 @@ unset PV_PLUGIN_PATH #------------------------------------------------------------------------------ # unset other ThirdParty environment variables +unset ADIOS_ARCH_PATH unset BOOST_ARCH_PATH unset CCMIO_ARCH_PATH unset CGAL_ARCH_PATH unset FFTW_ARCH_PATH +unset GPERFTOOLS_ARCH_PATH unset GMP_ARCH_PATH unset MPFR_ARCH_PATH +unset METIS_ARCH_PATH unset SCOTCH_ARCH_PATH #------------------------------------------------------------------------------ diff --git a/src/parallel/distributed/distributedTriSurfaceMesh/distributedTriSurfaceMesh.C b/src/parallel/distributed/distributedTriSurfaceMesh/distributedTriSurfaceMesh.C index de5557bcb55d59a53b6c5dde4b659690e681aee8..38cb229c7dfbbdb3fbeeb7677f4b0f5c85c8e91b 100644 --- a/src/parallel/distributed/distributedTriSurfaceMesh/distributedTriSurfaceMesh.C +++ b/src/parallel/distributed/distributedTriSurfaceMesh/distributedTriSurfaceMesh.C @@ -847,7 +847,7 @@ Foam::distributedTriSurfaceMesh::independentlyDistributedBbs "decomposeParDict", searchableSurface::time().system(), searchableSurface::time(), - IOobject::MUST_READ_IF_MODIFIED, + IOobject::MUST_READ, IOobject::NO_WRITE ) ) diff --git a/src/randomProcesses/Make/options b/src/randomProcesses/Make/options index 4d1c505daed6c9e5189349b734e2965e25eb785b..233247dccd568389de98af7e15c0f20939bc698d 100644 --- a/src/randomProcesses/Make/options +++ b/src/randomProcesses/Make/options @@ -5,6 +5,8 @@ EXE_INC = \ -I$(LIB_SRC)/surfMesh/lnInclude LIB_LIBS = \ - -L$(FFTW_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) -lfftw3 \ + -L$(FFTW_ARCH_PATH)/lib \ + -L$(FFTW_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ + -lfftw3 \ -lfiniteVolume \ -lsampling diff --git a/src/renumber/SloanRenumber/Make/options b/src/renumber/SloanRenumber/Make/options index 2c8f956a611718051304f5c066175e83e469ea3c..bf9567fef2bb19ea3d4d22470c56838adb5fa31f 100644 --- a/src/renumber/SloanRenumber/Make/options +++ b/src/renumber/SloanRenumber/Make/options @@ -5,7 +5,9 @@ EXE_INC = \ -I$(LIB_SRC)/renumber/renumberMethods/lnInclude LIB_LIBS = \ - -L$(BOOST_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) -lboost_system \ + -L$(BOOST_ARCH_PATH)/lib \ + -L$(BOOST_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ + -lboost_system \ -lmeshTools \ -ldecompositionMethods \ -lrenumberMethods diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/0/U b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/0/U similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/0/U rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/0/U diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/0/k b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/0/k similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/0/k rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/0/k diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/0/nut b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/0/nut similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/0/nut rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/0/nut diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/0/p b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/0/p similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/0/p rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/0/p diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/Allrun b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/Allrun similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/Allrun rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/Allrun diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/README b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/README similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/README rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/README diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/boundaryData/inlet/0/L b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/boundaryData/inlet/0/L similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/boundaryData/inlet/0/L rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/boundaryData/inlet/0/L diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/boundaryData/inlet/0/R b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/boundaryData/inlet/0/R similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/boundaryData/inlet/0/R rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/boundaryData/inlet/0/R diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/boundaryData/inlet/0/U b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/boundaryData/inlet/0/U similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/boundaryData/inlet/0/U rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/boundaryData/inlet/0/U diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/boundaryData/inlet/points b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/boundaryData/inlet/points similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/boundaryData/inlet/points rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/boundaryData/inlet/points diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/transportProperties b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/transportProperties similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/transportProperties rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/transportProperties diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/turbulenceProperties b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/turbulenceProperties similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/constant/turbulenceProperties rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/constant/turbulenceProperties diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/system/blockMeshDict b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/blockMeshDict similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/system/blockMeshDict rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/blockMeshDict diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/system/controlDict b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/controlDict similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/system/controlDict rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/controlDict diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/system/decomposeParDict b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/decomposeParDict similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/system/decomposeParDict rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/decomposeParDict diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/system/fvSchemes b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/fvSchemes similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/system/fvSchemes rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/fvSchemes diff --git a/tutorials/incompressible/pimpleFoam/channel395DFSEM/system/fvSolution b/tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/fvSolution similarity index 100% rename from tutorials/incompressible/pimpleFoam/channel395DFSEM/system/fvSolution rename to tutorials/incompressible/pimpleFoam/LES/channel395DFSEM/system/fvSolution diff --git a/tutorials/incompressible/simpleFoam/motorBike/Allrun b/tutorials/incompressible/simpleFoam/motorBike/Allrun index f2d7ed6bb0f4d12f52191115084a78f20adc688b..c110f083ecd737c4e8180e63f5a5b7df9368f9b7 100755 --- a/tutorials/incompressible/simpleFoam/motorBike/Allrun +++ b/tutorials/incompressible/simpleFoam/motorBike/Allrun @@ -4,7 +4,10 @@ cd ${0%/*} || exit 1 # Run from this directory # Source tutorial run functions . $WM_PROJECT_DIR/bin/tools/RunFunctions +# Alternative decomposeParDict name: decompDict="-decomposeParDict system/decomposeParDict.6" +## Standard decomposeParDict name: +# unset decompDict # copy motorbike surface from resources directory \cp $FOAM_TUTORIALS/resources/geometry/motorBike.obj.gz constant/triSurface/ @@ -13,6 +16,14 @@ runApplication surfaceFeatureExtract runApplication blockMesh runApplication decomposePar $decompDict + +# Using distributedTriSurfaceMesh? +if foamDictionary -entry geometry -value system/snappyHexMeshDict | \ + grep -q distributedTriSurfaceMesh +then + runParallel $decompDict surfaceRedistributePar motorBike.obj independent +fi + runParallel $decompDict snappyHexMesh -overwrite #- For non-parallel running: - set the initial fields diff --git a/tutorials/incompressible/simpleFoam/motorBike/system/decomposeParDict.6 b/tutorials/incompressible/simpleFoam/motorBike/system/decomposeParDict.6 index 82f0a4e81a972b7b9a398d5c3693750d6c0447cb..db5f0cd2c283170f048d8113451c047d7f062452 100644 --- a/tutorials/incompressible/simpleFoam/motorBike/system/decomposeParDict.6 +++ b/tutorials/incompressible/simpleFoam/motorBike/system/decomposeParDict.6 @@ -15,20 +15,20 @@ FoamFile // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // -numberOfSubdomains 4; +numberOfSubdomains 6; method hierarchical; // method ptscotch; simpleCoeffs { - n (4 1 1); + n (6 1 1); delta 0.001; } hierarchicalCoeffs { - n (2 2 1); + n (3 2 1); delta 0.001; order xyz; } diff --git a/tutorials/multiphase/reactingTwoPhaseEulerFoam/RAS/wallBoiling/0/T.gas b/tutorials/multiphase/reactingTwoPhaseEulerFoam/RAS/wallBoiling/0/T.gas index dcc261ce40c68e44fe29a07dfa3dc9f82aba4652..9cf3c15e7a91500c4a9f303e170e31283c11996c 100644 --- a/tutorials/multiphase/reactingTwoPhaseEulerFoam/RAS/wallBoiling/0/T.gas +++ b/tutorials/multiphase/reactingTwoPhaseEulerFoam/RAS/wallBoiling/0/T.gas @@ -40,7 +40,7 @@ boundaryField wall2 { type copiedFixedValue; - sourceFieldName T.liquid; + sourceField T.liquid; value uniform 368; } defaultFaces diff --git a/tutorials/multiphase/reactingTwoPhaseEulerFoam/RAS/wallBoilingIATE/0/T.gas b/tutorials/multiphase/reactingTwoPhaseEulerFoam/RAS/wallBoilingIATE/0/T.gas index 31f188e880bd1dbf3b39a6a18c99646f5bd46128..6046345c2709407170df9e3d088e9d65d1743436 100644 --- a/tutorials/multiphase/reactingTwoPhaseEulerFoam/RAS/wallBoilingIATE/0/T.gas +++ b/tutorials/multiphase/reactingTwoPhaseEulerFoam/RAS/wallBoilingIATE/0/T.gas @@ -40,7 +40,7 @@ boundaryField wall2 { type copiedFixedValue; - sourceFieldName T.liquid; + sourceField T.liquid; value uniform 368; } defaultFaces diff --git a/wmake/rules/General/ADIOS b/wmake/rules/General/ADIOS new file mode 100644 index 0000000000000000000000000000000000000000..f21af336bba3f3ff20400e1fde6c1e8d1742f8fe --- /dev/null +++ b/wmake/rules/General/ADIOS @@ -0,0 +1,19 @@ +#-------------------------------*- makefile -*--------------------------------- +# ADIOS includes/libraries + +sinclude $(GENERAL_RULES)/mplib$(WM_MPLIB) +sinclude $(RULES)/mplib$(WM_MPLIB) + +ADIOS_INC = -I$(ADIOS_ARCH_PATH)/include + +ADIOS_LIBS := \ + -L$(ADIOS_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ + -ladios_$(FOAM_MPI) + +# ADIOS dependent libraries. Eg, after -L/usr/lib64 ... +# Query as sequential to reduce mpi-dependencies + +ADIOS_LIBS += + $(shell $(ADIOS_ARCH_PATH)/bin/adios_config -s -l | sed -e 's@^.*-L/usr/lib[^ ]*@@') + +#------------------------------------------------------------------------------ diff --git a/wmake/rules/General/CGAL b/wmake/rules/General/CGAL index 83e8b1df1e9edcf44233b08cc898d79da5ff6797..2e7e3d5803a03aca10d5eb9007601c89cd930186 100644 --- a/wmake/rules/General/CGAL +++ b/wmake/rules/General/CGAL @@ -1,13 +1,15 @@ CGAL_INC = \ - -I$(CGAL_ARCH_PATH)/include \ - -I$(MPFR_ARCH_PATH)/include \ -I$(GMP_ARCH_PATH)/include \ + -I$(MPFR_ARCH_PATH)/include \ -I$(BOOST_ARCH_PATH)/include \ + -I$(CGAL_ARCH_PATH)/include \ -I/usr/include CGAL_LIBS = \ - -L$(MPFR_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ -L$(GMP_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ + -L$(MPFR_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ + -L$(BOOST_ARCH_PATH)/lib \ -L$(BOOST_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ + -L$(CGAL_ARCH_PATH)/lib \ -L$(CGAL_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ -lCGAL