From 6180e0db8b7161f0cbb1b366c3cf618d29aaf751 Mon Sep 17 00:00:00 2001
From: Andrew Heather <a.heather@opencfd.co.uk>
Date: Fri, 18 May 2018 10:49:10 +0100
Subject: [PATCH] INT: Additional integration updates/clean-up

---
 applications/solvers/compressible/rhoPimpleFoam/Make/options | 3 ++-
 applications/solvers/compressible/rhoSimpleFoam/Make/options | 3 ++-
 .../heatTransfer/buoyantBoussinesqPimpleFoam/Make/options    | 3 ++-
 .../heatTransfer/buoyantBoussinesqSimpleFoam/Make/options    | 3 ++-
 .../solvers/heatTransfer/buoyantPimpleFoam/Make/options      | 3 ++-
 .../solvers/heatTransfer/buoyantSimpleFoam/Make/options      | 3 ++-
 applications/solvers/incompressible/pimpleFoam/Make/options  | 3 ++-
 applications/solvers/incompressible/simpleFoam/Make/options  | 3 ++-
 src/atmosphericModels/Make/options                           | 4 ++--
 .../derivedFvPatchFields/atmBoundaryLayer/atmBoundaryLayer.H | 5 ++---
 .../atmBoundaryLayerInletEpsilonFvPatchScalarField.C         | 2 +-
 .../atmBoundaryLayerInletKFvPatchScalarField.C               | 2 +-
 .../atmBoundaryLayerInletVelocityFvPatchVectorField.C        | 2 +-
 .../kEpsilonLopesdaCosta/kEpsilonLopesdaCosta.H              | 2 +-
 .../simpleFoam/turbineSiting/system/controlDict              | 2 --
 15 files changed, 24 insertions(+), 19 deletions(-)

diff --git a/applications/solvers/compressible/rhoPimpleFoam/Make/options b/applications/solvers/compressible/rhoPimpleFoam/Make/options
index c3f820e3be4..958a2d2fc81 100644
--- a/applications/solvers/compressible/rhoPimpleFoam/Make/options
+++ b/applications/solvers/compressible/rhoPimpleFoam/Make/options
@@ -22,4 +22,5 @@ EXE_LIBS = \
     -lfvOptions \
     -ldynamicFvMesh \
     -ltopoChangerFvMesh \
-    -ldynamicMesh
+    -ldynamicMesh \
+    -latmosphericModels
diff --git a/applications/solvers/compressible/rhoSimpleFoam/Make/options b/applications/solvers/compressible/rhoSimpleFoam/Make/options
index aecfa919e7f..d3514cf84d7 100644
--- a/applications/solvers/compressible/rhoSimpleFoam/Make/options
+++ b/applications/solvers/compressible/rhoSimpleFoam/Make/options
@@ -17,4 +17,5 @@ EXE_LIBS = \
     -lfiniteVolume \
     -lsampling \
     -lmeshTools \
-    -lfvOptions
+    -lfvOptions \
+    -latmosphericModels
diff --git a/applications/solvers/heatTransfer/buoyantBoussinesqPimpleFoam/Make/options b/applications/solvers/heatTransfer/buoyantBoussinesqPimpleFoam/Make/options
index 043be5d13c2..767fc60e5b6 100644
--- a/applications/solvers/heatTransfer/buoyantBoussinesqPimpleFoam/Make/options
+++ b/applications/solvers/heatTransfer/buoyantBoussinesqPimpleFoam/Make/options
@@ -18,4 +18,5 @@ EXE_LIBS = \
     -lfiniteVolume \
     -lfvOptions \
     -lsampling \
-    -lmeshTools
+    -lmeshTools \
+    -latmosphericModels
diff --git a/applications/solvers/heatTransfer/buoyantBoussinesqSimpleFoam/Make/options b/applications/solvers/heatTransfer/buoyantBoussinesqSimpleFoam/Make/options
index 9046994122c..e805213895f 100644
--- a/applications/solvers/heatTransfer/buoyantBoussinesqSimpleFoam/Make/options
+++ b/applications/solvers/heatTransfer/buoyantBoussinesqSimpleFoam/Make/options
@@ -16,4 +16,5 @@ EXE_LIBS = \
     -lfiniteVolume \
     -lsampling \
     -lmeshTools \
-    -lfvOptions
+    -lfvOptions \
+    -latmosphericModels
diff --git a/applications/solvers/heatTransfer/buoyantPimpleFoam/Make/options b/applications/solvers/heatTransfer/buoyantPimpleFoam/Make/options
index 934083f2bba..cc85f5e8ccb 100644
--- a/applications/solvers/heatTransfer/buoyantPimpleFoam/Make/options
+++ b/applications/solvers/heatTransfer/buoyantPimpleFoam/Make/options
@@ -18,4 +18,5 @@ EXE_LIBS = \
     -lradiationModels \
     -lspecie \
     -lturbulenceModels \
-    -lcompressibleTurbulenceModels
+    -lcompressibleTurbulenceModels \
+    -latmosphericModels
diff --git a/applications/solvers/heatTransfer/buoyantSimpleFoam/Make/options b/applications/solvers/heatTransfer/buoyantSimpleFoam/Make/options
index 0d9433bac7d..c5694b8e518 100644
--- a/applications/solvers/heatTransfer/buoyantSimpleFoam/Make/options
+++ b/applications/solvers/heatTransfer/buoyantSimpleFoam/Make/options
@@ -19,4 +19,5 @@ EXE_LIBS = \
     -lradiationModels \
     -lturbulenceModels \
     -lcompressibleTurbulenceModels \
-    -lmeshTools
+    -lmeshTools \
+    -latmosphericModels
diff --git a/applications/solvers/incompressible/pimpleFoam/Make/options b/applications/solvers/incompressible/pimpleFoam/Make/options
index 14a5a2d924c..dc33faebf8d 100644
--- a/applications/solvers/incompressible/pimpleFoam/Make/options
+++ b/applications/solvers/incompressible/pimpleFoam/Make/options
@@ -19,4 +19,5 @@ EXE_LIBS = \
     -ldynamicFvMesh \
     -ltopoChangerFvMesh \
     -ldynamicMesh \
-    -lmeshTools
+    -lmeshTools \
+    -latmosphericModels
diff --git a/applications/solvers/incompressible/simpleFoam/Make/options b/applications/solvers/incompressible/simpleFoam/Make/options
index 1d9ded80bfa..13060603d19 100644
--- a/applications/solvers/incompressible/simpleFoam/Make/options
+++ b/applications/solvers/incompressible/simpleFoam/Make/options
@@ -15,4 +15,5 @@ EXE_LIBS = \
     -lfiniteVolume \
     -lmeshTools \
     -lfvOptions \
-    -lsampling
+    -lsampling \
+    -latmosphericModels
diff --git a/src/atmosphericModels/Make/options b/src/atmosphericModels/Make/options
index 3ffea18becb..93f257f6ee1 100644
--- a/src/atmosphericModels/Make/options
+++ b/src/atmosphericModels/Make/options
@@ -5,7 +5,7 @@ EXE_INC = \
     -I$(LIB_SRC)/transportModels/incompressible/singlePhaseTransportModel \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/meshTools/lnInclude \
-    -I$(LIB_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/surfMesh/lnInclude \
     -I$(LIB_SRC)/fvOptions/lnInclude
 
 LIB_LIBS = \
@@ -14,5 +14,5 @@ LIB_LIBS = \
     -lincompressibleTransportModels \
     -lfiniteVolume \
     -lmeshTools \
-    -ltriSurface \
+    -lsurfMesh \
     -lfvOptions
diff --git a/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayer/atmBoundaryLayer.H b/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayer/atmBoundaryLayer.H
index a7360f8d380..0f244ed59ed 100644
--- a/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayer/atmBoundaryLayer.H
+++ b/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayer/atmBoundaryLayer.H
@@ -123,7 +123,7 @@ namespace Foam
 {
 
 /*---------------------------------------------------------------------------*\
-       Class atmBoundaryLayer Declaration
+                      Class atmBoundaryLayer Declaration
 \*---------------------------------------------------------------------------*/
 
 class atmBoundaryLayer
@@ -168,8 +168,7 @@ public:
         //- Construct from the coordinates field and dictionary
         atmBoundaryLayer(const vectorField& p, const dictionary&);
 
-        //- Construct by mapping given
-        // atmBoundaryLayer onto a new patch
+        //- Construct by mapping given atmBoundaryLayer onto a new patch
         atmBoundaryLayer
         (
             const atmBoundaryLayer&,
diff --git a/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletEpsilon/atmBoundaryLayerInletEpsilonFvPatchScalarField.C b/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletEpsilon/atmBoundaryLayerInletEpsilonFvPatchScalarField.C
index 65e748f3dc3..8aeeed713de 100644
--- a/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletEpsilon/atmBoundaryLayerInletEpsilonFvPatchScalarField.C
+++ b/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletEpsilon/atmBoundaryLayerInletEpsilonFvPatchScalarField.C
@@ -133,7 +133,7 @@ void atmBoundaryLayerInletEpsilonFvPatchScalarField::write(Ostream& os) const
 {
     fvPatchScalarField::write(os);
     atmBoundaryLayer::write(os);
-    writeEntryIfDifferent<word>(os, "phi", "phi", phiName_);
+    os.writeEntryIfDifferent<word>("phi", "phi", phiName_);
     writeEntry("value", os);
 }
 
diff --git a/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletK/atmBoundaryLayerInletKFvPatchScalarField.C b/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletK/atmBoundaryLayerInletKFvPatchScalarField.C
index 4078d854825..06f366089d1 100644
--- a/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletK/atmBoundaryLayerInletKFvPatchScalarField.C
+++ b/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletK/atmBoundaryLayerInletKFvPatchScalarField.C
@@ -133,7 +133,7 @@ void atmBoundaryLayerInletKFvPatchScalarField::write(Ostream& os) const
 {
     fvPatchScalarField::write(os);
     atmBoundaryLayer::write(os);
-    writeEntryIfDifferent<word>(os, "phi", "phi", phiName_);
+    os.writeEntryIfDifferent<word>("phi", "phi", phiName_);
     writeEntry("value", os);
 }
 
diff --git a/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletVelocity/atmBoundaryLayerInletVelocityFvPatchVectorField.C b/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletVelocity/atmBoundaryLayerInletVelocityFvPatchVectorField.C
index ec9ee6e79cf..b1d423e5454 100644
--- a/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletVelocity/atmBoundaryLayerInletVelocityFvPatchVectorField.C
+++ b/src/atmosphericModels/derivedFvPatchFields/atmBoundaryLayerInletVelocity/atmBoundaryLayerInletVelocityFvPatchVectorField.C
@@ -133,7 +133,7 @@ void atmBoundaryLayerInletVelocityFvPatchVectorField::write(Ostream& os) const
 {
     fvPatchVectorField::write(os);
     atmBoundaryLayer::write(os);
-    writeEntryIfDifferent<word>(os, "phi", "phi", phiName_);
+    os.writeEntryIfDifferent<word>("phi", "phi", phiName_);
     writeEntry("value", os);
 }
 
diff --git a/src/atmosphericModels/kEpsilonLopesdaCosta/kEpsilonLopesdaCosta.H b/src/atmosphericModels/kEpsilonLopesdaCosta/kEpsilonLopesdaCosta.H
index b72992d9a4b..a9f2affd6ba 100644
--- a/src/atmosphericModels/kEpsilonLopesdaCosta/kEpsilonLopesdaCosta.H
+++ b/src/atmosphericModels/kEpsilonLopesdaCosta/kEpsilonLopesdaCosta.H
@@ -74,7 +74,7 @@ namespace RASModels
 {
 
 /*---------------------------------------------------------------------------*\
-                           Class kEpsilonLopesdaCosta Declaration
+                    Class kEpsilonLopesdaCosta Declaration
 \*---------------------------------------------------------------------------*/
 
 template<class BasicTurbulenceModel>
diff --git a/tutorials/incompressible/simpleFoam/turbineSiting/system/controlDict b/tutorials/incompressible/simpleFoam/turbineSiting/system/controlDict
index bedecb22e9a..2654bdd2569 100644
--- a/tutorials/incompressible/simpleFoam/turbineSiting/system/controlDict
+++ b/tutorials/incompressible/simpleFoam/turbineSiting/system/controlDict
@@ -44,6 +44,4 @@ timePrecision   6;
 
 runTimeModifiable yes;
 
-libs ("libatmosphericModels.so");
-
 // ************************************************************************* //
-- 
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