From 63cc7b534a31ce895516ebf2056fd94dfc5a9650 Mon Sep 17 00:00:00 2001
From: andy <andy>
Date: Mon, 18 Feb 2013 17:15:23 +0000
Subject: [PATCH] ENH: Doxygen updates

---
 doc/Doxygen/Doxyfile        | 531 ++++++++++++++++++++++++++----------
 doc/Doxygen/_Footer         |   2 +-
 doc/Doxygen/_Header         |   5 +-
 doc/Doxygen/css/cfdNav.css  |   5 +
 doc/Doxygen/css/doxyMod.css |  15 +
 5 files changed, 410 insertions(+), 148 deletions(-)

diff --git a/doc/Doxygen/Doxyfile b/doc/Doxygen/Doxyfile
index 4e3829d65a1..5e1108d06b3 100644
--- a/doc/Doxygen/Doxyfile
+++ b/doc/Doxygen/Doxyfile
@@ -1,14 +1,14 @@
-# Doxyfile 1.6.3
+# Doxyfile 1.6.3-1.8.1
 
 # This file describes the settings to be used by the documentation system
-# doxygen (www.doxygen.org) for a project
+# doxygen (www.doxygen.org) for a project.
 #
-# All text after a hash (#) is considered a comment and will be ignored
+# All text after a hash (#) is considered a comment and will be ignored.
 # The format is:
 #       TAG = value [value, ...]
 # For lists items can also be appended using:
 #       TAG += value [value, ...]
-# Values that contain spaces should be placed between quotes (" ")
+# Values that contain spaces should be placed between quotes (" ").
 
 #---------------------------------------------------------------------------
 # Project related configuration options
@@ -22,8 +22,9 @@
 
 DOXYFILE_ENCODING      = UTF-8
 
-# The PROJECT_NAME tag is a single word (or a sequence of words surrounded
-# by quotes) that should identify the project.
+# The PROJECT_NAME tag is a single word (or sequence of words) that should
+# identify the project. Note that if you do not use Doxywizard you need
+# to put quotes around the project name if it contains spaces.
 
 PROJECT_NAME           = OpenFOAM-$(WM_PROJECT_VERSION)
 
@@ -33,6 +34,19 @@ PROJECT_NAME           = OpenFOAM-$(WM_PROJECT_VERSION)
 
 PROJECT_NUMBER         =
 
+# Using the PROJECT_BRIEF tag one can provide an optional one line description
+# for a project that appears at the top of each page and should give viewer
+# a quick idea about the purpose of the project. Keep the description short.
+
+PROJECT_BRIEF          =
+
+# With the PROJECT_LOGO tag one can specify an logo or icon that is
+# included in the documentation. The maximum height of the logo should not
+# exceed 55 pixels and the maximum width should not exceed 200 pixels.
+# Doxygen will copy the logo to the output directory.
+
+PROJECT_LOGO           =
+
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
 # base path where the generated documentation will be put.
 # If a relative path is entered, it will be relative to the location
@@ -57,7 +71,7 @@ CREATE_SUBDIRS         = NO
 # Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
 # Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
 # messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak,
+# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
 # Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
 
 OUTPUT_LANGUAGE        = English
@@ -126,7 +140,7 @@ STRIP_FROM_PATH        = $(WM_PROJECT_DIR)
 STRIP_FROM_INC_PATH    =
 
 # If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter
-# (but less readable) file names. This can be useful is your file systems
+# (but less readable) file names. This can be useful if your file system
 # doesn't support long names like on DOS, Mac, or CD-ROM.
 
 SHORT_NAMES            = YES
@@ -181,6 +195,13 @@ TAB_SIZE               = 4
 
 ALIASES                =
 
+# This tag can be used to specify a number of word-keyword mappings (TCL only).
+# A mapping has the form "name=value". For example adding
+# "class=itcl::class" will allow you to use the command class in the
+# itcl::class meaning.
+
+TCL_SUBST              =
+
 # Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C
 # sources only. Doxygen will then generate output that is more tailored for C.
 # For instance, some of the names that are used will be different. The list
@@ -208,23 +229,31 @@ OPTIMIZE_FOR_FORTRAN   = NO
 OPTIMIZE_OUTPUT_VHDL   = NO
 
 # Doxygen selects the parser to use depending on the extension of the files it
-# parses.  With this tag you can assign which parser to use for a given
-# extension.  Doxygen has a built-in mapping, but you can override or extend it
-# using this tag.  The format is ext=language, where ext is a file extension,
-# and language is one of the parsers supported by doxygen: IDL, Java,
-# Javascript, C#, C, C++, D, PHP, Objective-C, Python, Fortran, VHDL, C,
-# C++. For instance to make doxygen treat .inc files as Fortran files (default
-# is PHP), and .f files as C (default is Fortran), use: inc=Fortran f=C. Note
-# that for custom extensions you also need to set FILE_PATTERNS otherwise the
-# files are not read by doxygen.
+# parses. With this tag you can assign which parser to use for a given extension.
+# Doxygen has a built-in mapping, but you can override or extend it using this
+# tag. The format is ext=language, where ext is a file extension, and language
+# is one of the parsers supported by doxygen: IDL, Java, Javascript, CSharp, C,
+# C++, D, PHP, Objective-C, Python, Fortran, VHDL, C, C++. For instance to make
+# doxygen treat .inc files as Fortran files (default is PHP), and .f files as C
+# (default is Fortran), use: inc=Fortran f=C. Note that for custom extensions
+# you also need to set FILE_PATTERNS otherwise the files are not read by doxygen.
 
 EXTENSION_MAPPING      =
 
+# If MARKDOWN_SUPPORT is enabled (the default) then doxygen pre-processes all
+# comments according to the Markdown format, which allows for more readable
+# documentation. See http://daringfireball.net/projects/markdown/ for details.
+# The output of markdown processing is further processed by doxygen, so you
+# can mix doxygen, HTML, and XML commands with Markdown formatting.
+# Disable only in case of backward compatibilities issues.
+
+MARKDOWN_SUPPORT       = NO
+
 # If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
 # to include (a tag file for) the STL sources as input, then you should
 # set this tag to YES in order to let doxygen match functions declarations and
 # definitions whose arguments contain STL classes (e.g. func(std::string); v.s.
-# func(std::string) {}). This also make the inheritance and collaboration
+# func(std::string) {}). This also makes the inheritance and collaboration
 # diagrams that involve STL classes more complete and accurate.
 
 BUILTIN_STL_SUPPORT    = NO
@@ -240,10 +269,10 @@ CPP_CLI_SUPPORT        = NO
 
 SIP_SUPPORT            = NO
 
-# For Microsoft's IDL there are propget and propput attributes to indicate
-# getter and setter methods for a property. Setting this option to YES (the
-# default) will make doxygen to replace the get and set methods by a property in
-# the documentation. This will only work if the methods are indeed getting or
+# For Microsoft's IDL there are propget and propput attributes to indicate getter
+# and setter methods for a property. Setting this option to YES (the default)
+# will make doxygen replace the get and set methods by a property in the
+# documentation. This will only work if the methods are indeed getting or
 # setting a simple type. If this is not the case, or you want to show the
 # methods anyway, you should set this option to NO.
 
@@ -264,6 +293,22 @@ DISTRIBUTE_GROUP_DOC   = NO
 
 SUBGROUPING            = YES
 
+# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and
+# unions are shown inside the group in which they are included (e.g. using
+# @ingroup) instead of on a separate page (for HTML and Man pages) or
+# section (for LaTeX and RTF).
+
+INLINE_GROUPED_CLASSES = NO
+
+# When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
+# unions with only public data fields will be shown inline in the documentation
+# of the scope in which they are defined (i.e. file, namespace, or group
+# documentation), provided this scope is documented. If set to NO (the default),
+# structs, classes, and unions are shown on a separate page (for HTML and Man
+# pages) or section (for LaTeX and RTF).
+
+INLINE_SIMPLE_STRUCTS  = NO
+
 # When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum
 # is documented as struct, union, or enum with the name of the typedef. So
 # typedef struct TypeS {} TypeT, will appear in the documentation as a struct
@@ -280,16 +325,27 @@ TYPEDEF_HIDES_STRUCT   = NO
 # For small to medium size projects (<1000 input files) the default value is
 # probably good enough. For larger projects a too small cache size can cause
 # doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penality.
+# causing a significant performance penalty.
 # If the system has enough physical memory increasing the cache will improve the
 # performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will rougly double the
+# a logarithmic scale so increasing the size by one will roughly double the
 # memory usage. The cache size is given by this formula:
 # 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols
+# corresponding to a cache size of 2^16 = 65536 symbols.
 
 SYMBOL_CACHE_SIZE      = 0
 
+# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
+# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
+# their name and scope. Since this can be an expensive process and often the
+# same symbol appear multiple times in the code, doxygen keeps a cache of
+# pre-resolved symbols. If the cache is too small doxygen will become slower.
+# If the cache is too large, memory is wasted. The cache size is given by this
+# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
+# corresponding to a cache size of 2^16 = 65536 symbols.
+
+LOOKUP_CACHE_SIZE      = 0
+
 #---------------------------------------------------------------------------
 # Build related configuration options
 #---------------------------------------------------------------------------
@@ -306,6 +362,10 @@ EXTRACT_ALL            = YES
 
 EXTRACT_PRIVATE        = NO
 
+# If the EXTRACT_PACKAGE tag is set to YES all members with package or internal scope will be included in the documentation.
+
+EXTRACT_PACKAGE        = NO
+
 # If the EXTRACT_STATIC tag is set to YES all static members of a file
 # will be included in the documentation.
 
@@ -328,7 +388,7 @@ EXTRACT_LOCAL_METHODS  = NO
 # extracted and appear in the documentation as a namespace called
 # 'anonymous_namespace{file}', where file will be replaced with the base
 # name of the file that contains the anonymous namespace. By default
-# anonymous namespace are hidden.
+# anonymous namespaces are hidden.
 
 EXTRACT_ANON_NSPACES   = NO
 
@@ -413,12 +473,13 @@ SORT_MEMBER_DOCS       = NO
 
 SORT_BRIEF_DOCS        = NO
 
-# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
-# (brief and detailed) documentation of class members so that constructors and
-# destructors are listed first. If set to NO (the default) the constructors will
-# appear in the respective orders defined by SORT_MEMBER_DOCS and
-# SORT_BRIEF_DOCS. This tag will be ignored for brief docs if SORT_BRIEF_DOCS is
-# set to NO and ignored for detailed docs if SORT_MEMBER_DOCS is set to NO.
+# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen
+# will sort the (brief and detailed) documentation of class members so that
+# constructors and destructors are listed first. If set to NO (the default)
+# the constructors will appear in the respective orders defined by
+# SORT_MEMBER_DOCS and SORT_BRIEF_DOCS.
+# This tag will be ignored for brief docs if SORT_BRIEF_DOCS is set to NO
+# and ignored for detailed docs if SORT_MEMBER_DOCS is set to NO.
 
 SORT_MEMBERS_CTORS_1ST = NO
 
@@ -438,6 +499,15 @@ SORT_GROUP_NAMES       = NO
 
 SORT_BY_SCOPE_NAME     = NO
 
+# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to
+# do proper type resolution of all parameters of a function it will reject a
+# match between the prototype and the implementation of a member function even
+# if there is only one candidate or it is obvious which candidate to choose
+# by doing a simple string match. By disabling STRICT_PROTO_MATCHING doxygen
+# will still accept a match between prototype and implementation in such cases.
+
+STRICT_PROTO_MATCHING  = NO
+
 # The GENERATE_TODOLIST tag can be used to enable (YES) or
 # disable (NO) the todo list. This list is created by putting \todo
 # commands in the documentation.
@@ -468,10 +538,10 @@ GENERATE_DEPRECATEDLIST= YES
 ENABLED_SECTIONS       =
 
 # The MAX_INITIALIZER_LINES tag determines the maximum number of lines
-# the initial value of a variable or define consists of for it to appear in
+# the initial value of a variable or macro consists of for it to appear in
 # the documentation. If the initializer consists of more lines than specified
 # here it will be hidden. Use a value of 0 to hide initializers completely.
-# The appearance of the initializer of individual variables and defines in the
+# The appearance of the initializer of individual variables and macros in the
 # documentation can be controlled using \showinitializer or \hideinitializer
 # command in the documentation regardless of this setting.
 
@@ -483,6 +553,7 @@ MAX_INITIALIZER_LINES  = 30
 
 SHOW_USED_FILES        = YES
 
+# 1.6.3-1.7.4 SETTING
 # If the sources in your project are distributed over multiple directories
 # then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy
 # in the documentation. The default is NO.
@@ -515,12 +586,22 @@ FILE_VERSION_FILTER    =
 # The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
 # by doxygen. The layout file controls the global structure of the generated
 # output files in an output format independent way. The create the layout file
-# that represents doxygen's defaults, run doxygen with the -l option. You can
-# optionally specify a file name after the option, if omitted DoxygenLayout.xml
-# will be used as the name of the layout file.
+# that represents doxygen's defaults, run doxygen with the -l option.
+# You can optionally specify a file name after the option, if omitted
+# DoxygenLayout.xml will be used as the name of the layout file.
 
 LAYOUT_FILE            =
 
+# The CITE_BIB_FILES tag can be used to specify one or more bib files
+# containing the references data. This must be a list of .bib files. The
+# .bib extension is automatically appended if omitted. Using this command
+# requires the bibtex tool to be installed. See also
+# http://en.wikipedia.org/wiki/BibTeX for more info. For LaTeX the style
+# of the bibliography can be controlled using LATEX_BIB_STYLE. To use this
+# feature you need bibtex and perl available in the search path.
+
+CITE_BIB_FILES         =
+
 #---------------------------------------------------------------------------
 # configuration options related to warning and progress messages
 #---------------------------------------------------------------------------
@@ -549,7 +630,7 @@ WARN_IF_UNDOCUMENTED   = YES
 
 WARN_IF_DOC_ERROR      = YES
 
-# This WARN_NO_PARAMDOC option can be abled to get warnings for
+# The WARN_NO_PARAMDOC option can be enabled to get warnings for
 # functions that are documented, but have no documentation for their parameters
 # or return value. If set to NO (the default) doxygen will only warn about
 # wrong or incomplete parameter documentation, but not about the absence of
@@ -564,7 +645,7 @@ WARN_NO_PARAMDOC       = NO
 # $version, which will be replaced by the version of the file (if it could
 # be obtained via FILE_VERSION_FILTER)
 
-WARN_FORMAT            = "$file:$line: $text "
+WARN_FORMAT            = "$file:$line: $text"
 
 # The WARN_LOGFILE tag can be used to specify a file to which warning
 # and error messages should be written. If left blank the output is written
@@ -604,8 +685,9 @@ INPUT_ENCODING         = UTF-8
 # FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
 # and *.h) to filter out the source-files in the directories. If left
 # blank the following patterns are tested:
-# *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx
-# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90
+# *.c *.cc *.cxx *.cpp *.c++ *.d *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh
+# *.hxx *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.dox *.py
+# *.f90 *.f *.for *.vhd *.vhdl
 
 FILE_PATTERNS          = *.H \
                          *.C \
@@ -617,14 +699,16 @@ FILE_PATTERNS          = *.H \
 
 RECURSIVE              = YES
 
-# The EXCLUDE tag can be used to specify files and/or directories that should
+# The EXCLUDE tag can be used to specify files and/or directories that should be
 # excluded from the INPUT source files. This way you can easily exclude a
 # subdirectory from a directory tree whose root is specified with the INPUT tag.
+# Note that relative paths are relative to the directory from which doxygen is
+# run.
 
 EXCLUDE                =
 
-# The EXCLUDE_SYMLINKS tag can be used select whether or not files or
-# directories that are symbolic links (a Unix filesystem feature) are excluded
+# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
+# directories that are symbolic links (a Unix file system feature) are excluded
 # from the input.
 
 EXCLUDE_SYMLINKS       = NO
@@ -689,8 +773,8 @@ INPUT_FILTER           = $(WM_PROJECT_DIR)/bin/tools/doxyFilter
 # filter if there is a match.
 # The filters are a list of the form:
 # pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further
-# info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER
-# is applied to all files.
+# info on how filters are used. If FILTER_PATTERNS is empty or if
+# non of the patterns match the file name, INPUT_FILTER is applied.
 
 FILTER_PATTERNS        =
 
@@ -700,6 +784,14 @@ FILTER_PATTERNS        =
 
 FILTER_SOURCE_FILES    = NO
 
+# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file
+# pattern. A pattern will override the setting for FILTER_PATTERN (if any)
+# and it is also possible to disable source filtering for a specific pattern
+# using *.ext= (so without naming a filter). This option only has effect when
+# FILTER_SOURCE_FILES is enabled.
+
+FILTER_SOURCE_PATTERNS =
+
 #---------------------------------------------------------------------------
 # configuration options related to source browsing
 #---------------------------------------------------------------------------
@@ -788,6 +880,7 @@ IGNORE_PREFIX          =
 
 GENERATE_HTML          = YES
 
+# 1.6.3 SETTING
 # If the HTML_FOOTER_DESCRIPTION tag is set to YES, Doxygen will
 # add generated date, project name and doxygen version to HTML footer.
 
@@ -807,7 +900,14 @@ HTML_FILE_EXTENSION    = .html
 
 # The HTML_HEADER tag can be used to specify a personal HTML header for
 # each generated HTML page. If it is left blank doxygen will generate a
-# standard header.
+# standard header. Note that when using a custom header you are responsible
+#  for the proper inclusion of any scripts and style sheets that doxygen
+# needs, which is dependent on the configuration options used.
+# It is advised to generate a default header using "doxygen -w html
+# header.html footer.html stylesheet.css YourConfigFile" and then modify
+# that header. Note that the header is subject to change so you typically
+# have to redo this when upgrading to a newer version of doxygen or when
+# changing the value of configuration settings such as GENERATE_TREEVIEW!
 
 HTML_HEADER            = $(WM_PROJECT_DIR)/doc/Doxygen/_Header
 
@@ -822,16 +922,51 @@ HTML_FOOTER            = $(WM_PROJECT_DIR)/doc/Doxygen/_Footer
 # fine-tune the look of the HTML output. If the tag is left blank doxygen
 # will generate a default style sheet. Note that doxygen will try to copy
 # the style sheet file to the HTML output directory, so don't put your own
-# stylesheet in the HTML output directory as well, or it will be erased!
+# style sheet in the HTML output directory as well, or it will be erased!
 
 HTML_STYLESHEET        =
 
+# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
+# other source files which should be copied to the HTML output directory. Note
+# that these files will be copied to the base HTML output directory. Use the
+# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
+# files. In the HTML_STYLESHEET file, use the file name only. Also note that
+# the files will be copied as-is; there are no commands or markers available.
+
+HTML_EXTRA_FILES       =
+
+# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output.
+# Doxygen will adjust the colors in the style sheet and background images
+# according to this color. Hue is specified as an angle on a colorwheel,
+# see http://en.wikipedia.org/wiki/Hue for more information.
+# For instance the value 0 represents red, 60 is yellow, 120 is green,
+# 180 is cyan, 240 is blue, 300 purple, and 360 is red again.
+# The allowed range is 0 to 359.
+
+HTML_COLORSTYLE_HUE    = 220
+
+# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of
+# the colors in the HTML output. For a value of 0 the output will use
+# grayscales only. A value of 255 will produce the most vivid colors.
+
+HTML_COLORSTYLE_SAT    = 100
+
+# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to
+# the luminance component of the colors in the HTML output. Values below
+# 100 gradually make the output lighter, whereas values above 100 make
+# the output darker. The value divided by 100 is the actual gamma applied,
+# so 80 represents a gamma of 0.8, The value 220 represents a gamma of 2.2,
+# and 100 does not change the gamma.
+
+HTML_COLORSTYLE_GAMMA  = 80
+
 # If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML
 # page will contain the date and time when the page was generated. Setting
 # this to NO can help when comparing the output of multiple runs.
 
 HTML_TIMESTAMP         = NO
 
+# 1.6.3-1.7.4 SETTING
 # If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
 # files or namespaces will be aligned in HTML using tables. If set to
 # NO a bullet list will be used.
@@ -840,21 +975,31 @@ HTML_ALIGN_MEMBERS     = YES
 
 # If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
 # documentation will contain sections that can be hidden and shown after the
-# page has loaded. For this to work a browser that supports
-# JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox
-# Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari).
+# page has loaded.
 
 HTML_DYNAMIC_SECTIONS  = NO
 
-# If the GENERATE_DOCSET tag is set to YES, additional index files will be
-# generated that can be used as input for Apple's Xcode 3 integrated development
-# environment, introduced with OSX 10.5 (Leopard).  To create a documentation
-# set, doxygen will generate a Makefile in the HTML output directory. Running
-# make will produce the docset in that directory and running "make install" will
-# install the docset in ~/Library/Developer/Shared/Documentation/DocSets so that
-# Xcode will find it at startup.  See
-# http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more
-# information.
+# With HTML_INDEX_NUM_ENTRIES one can control the preferred number of
+# entries shown in the various tree structured indices initially; the user
+# can expand and collapse entries dynamically later on. Doxygen will expand
+# the tree to such a level that at most the specified number of entries are
+# visible (unless a fully collapsed tree already exceeds this amount).
+# So setting the number of entries 1 will produce a full collapsed tree by
+# default. 0 is a special value representing an infinite number of entries
+# and will result in a full expanded tree by default.
+
+HTML_INDEX_NUM_ENTRIES = 100
+
+# If the GENERATE_DOCSET tag is set to YES, additional index files
+# will be generated that can be used as input for Apple's Xcode 3
+# integrated development environment, introduced with OSX 10.5 (Leopard).
+# To create a documentation set, doxygen will generate a Makefile in the
+# HTML output directory. Running make will produce the docset in that
+# directory and running "make install" will install the docset in
+# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find
+# it at startup.
+# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html
+# for more information.
 
 GENERATE_DOCSET        = NO
 
@@ -872,6 +1017,16 @@ DOCSET_FEEDNAME        = "Doxygen generated docs"
 
 DOCSET_BUNDLE_ID       = org.doxygen.Project
 
+# When GENERATE_PUBLISHER_ID tag specifies a string that should uniquely identify
+# the documentation publisher. This should be a reverse domain-name style
+# string, e.g. com.mycompany.MyDocSet.documentation.
+
+DOCSET_PUBLISHER_ID    = org.doxygen.Publisher
+
+# The GENERATE_PUBLISHER_NAME tag identifies the documentation publisher.
+
+DOCSET_PUBLISHER_NAME  = Publisher
+
 # If the GENERATE_HTMLHELP tag is set to YES, additional index files
 # will be generated that can be used as input for tools like the
 # Microsoft HTML help workshop to generate a compiled HTML help file (.chm)
@@ -917,9 +1072,9 @@ BINARY_TOC             = NO
 TOC_EXPAND             = NO
 
 # If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
-# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that
-# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help
-# (.qch) of the generated HTML documentation.
+# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated
+# that can be used as input for Qt's qhelpgenerator to generate a
+# Qt Compressed Help (.qch) of the generated HTML documentation.
 
 GENERATE_QHP           = NO
 
@@ -942,22 +1097,23 @@ QHP_NAMESPACE          = org.doxygen.Project
 QHP_VIRTUAL_FOLDER     = doc
 
 # If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to
-# add.  For more information please see
+# add. For more information please see
 # http://doc.trolltech.com/qthelpproject.html#custom-filters
 
 QHP_CUST_FILTER_NAME   =
 
-# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom
-# filter to add.For more information please see <a
-# href="http://doc.trolltech.com/qthelpproject.html#custom-filters">Qt Help
-# Project / Custom Filters</a>.
+# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the
+# custom filter to add. For more information please see
+# <a href="http://doc.trolltech.com/qthelpproject.html#custom-filters">
+# Qt Help Project / Custom Filters</a>.
 
 QHP_CUST_FILTER_ATTRS  =
 
 # The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
-# project's filter section matches.  <a
-# href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">Qt Help
-# Project / Filter Attributes</a>.
+# project's
+# filter section matches.
+# <a href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">
+# Qt Help Project / Filter Attributes</a>.
 
 QHP_SECT_FILTER_ATTRS  =
 
@@ -968,14 +1124,14 @@ QHP_SECT_FILTER_ATTRS  =
 
 QHG_LOCATION           =
 
-# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be
-#  generated, which together with the HTML files, form an Eclipse help
-#  plugin. To install this plugin and make it available under the help contents
-#  menu in Eclipse, the contents of the directory containing the HTML and XML
-#  files needs to be copied into the plugins directory of eclipse. The name of
-#  the directory within the plugins directory should be the same as the
-#  ECLIPSE_DOC_ID value. After copying Eclipse needs to be restarted before the
-#  help appears.
+# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files
+#  will be generated, which together with the HTML files, form an Eclipse help
+# plugin. To install this plugin and make it available under the help contents
+# menu in Eclipse, the contents of the directory containing the HTML and XML
+# files needs to be copied into the plugins directory of eclipse. The name of
+# the directory within the plugins directory should be the same as
+# the ECLIPSE_DOC_ID value. After copying Eclipse needs to be restarted before
+# the help appears.
 
 GENERATE_ECLIPSEHELP   = NO
 
@@ -985,16 +1141,14 @@ GENERATE_ECLIPSEHELP   = NO
 
 ECLIPSE_DOC_ID         = org.doxygen.Project
 
-# The DISABLE_INDEX tag can be used to turn on/off the condensed index at
-# top of each HTML page. The value NO (the default) enables the index and
-# the value YES disables it.
+# The DISABLE_INDEX tag can be used to turn on/off the condensed index (tabs)
+# at top of each HTML page. The value NO (the default) enables the index and
+# the value YES disables it. Since the tabs have the same information as the
+# navigation tree you can set this option to NO if you already set
+# GENERATE_TREEVIEW to YES.
 
 DISABLE_INDEX          = NO
 
-# This tag can be used to set the number of enum values (range [1..20])
-# that doxygen will group on one line in the generated HTML documentation.
-
-ENUM_VALUES_PER_LINE   = 4
 
 # The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
 # structure should be generated to display hierarchical information.
@@ -1003,9 +1157,19 @@ ENUM_VALUES_PER_LINE   = 4
 # is generated for HTML Help). For this to work a browser that supports
 # JavaScript, DHTML, CSS and frames is required (i.e. any modern browser).
 # Windows users are probably better off using the HTML help feature.
+# Since the tree basically has the same information as the tab index you
+# could consider to set DISABLE_INDEX to NO when enabling this option.
 
 GENERATE_TREEVIEW      = NO
 
+# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values
+# (range [0,1..20]) that doxygen will group on one line in the generated HTML
+# documentation. Note that a value of 0 will completely suppress the enum
+# values from appearing in the overview section.
+
+ENUM_VALUES_PER_LINE   = 4
+
+# 1.6.3-1.7.4 SETTING
 # By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories,
 # and Class Hierarchy pages using a tree view instead of an ordered list.
 
@@ -1017,6 +1181,11 @@ USE_INLINE_TREES       = NO
 
 TREEVIEW_WIDTH         = 250
 
+# When the EXT_LINKS_IN_WINDOW option is set to YES doxygen will open
+# links to external symbols imported via tag files in a separate window.
+
+EXT_LINKS_IN_WINDOW    = NO
+
 # Use this tag to change the font size of Latex formulas included
 # as images in the HTML documentation. The default is 10. Note that
 # when you change the font size after a successful doxygen run you need
@@ -1025,27 +1194,59 @@ TREEVIEW_WIDTH         = 250
 
 FORMULA_FONTSIZE       = 10
 
-# When the SEARCHENGINE tag is enabled doxygen will generate a search box for
-# the HTML output. The underlying search engine uses javascript and DHTML and
-# should work on any modern browser. Note that when using HTML help
-# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET)
-# there is already a search function so this one should typically be
-# disabled. For large projects the javascript based search engine can be slow,
-# then enabling SERVER_BASED_SEARCH may provide a better solution.
+# Use the FORMULA_TRANPARENT tag to determine whether or not the images
+# generated for formulas are transparent PNGs. Transparent PNGs are
+# not supported properly for IE 6.0, but are supported on all modern browsers.
+# Note that when changing this option you need to delete any form_*.png files
+# in the HTML output before the changes have effect.
+
+FORMULA_TRANSPARENT    = YES
+
+# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax
+# (see http://www.mathjax.org) which uses client side Javascript for the
+# rendering instead of using prerendered bitmaps. Use this if you do not
+# have LaTeX installed or if you want to formulas look prettier in the HTML
+# output. When enabled you may also need to install MathJax separately and
+# configure the path to it using the MATHJAX_RELPATH option.
+
+USE_MATHJAX            = NO
+
+# When MathJax is enabled you need to specify the location relative to the
+# HTML output directory using the MATHJAX_RELPATH option. The destination
+# directory should contain the MathJax.js script. For instance, if the mathjax
+# directory is located at the same level as the HTML output directory, then
+# MATHJAX_RELPATH should be ../mathjax. The default value points to
+# the MathJax Content Delivery Network so you can quickly see the result without
+# installing MathJax.
+# However, it is strongly recommended to install a local
+# copy of MathJax from http://www.mathjax.org before deployment.
+
+MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
+
+# The MATHJAX_EXTENSIONS tag can be used to specify one or MathJax extension
+# names that should be enabled during MathJax rendering.
+
+MATHJAX_EXTENSIONS     =
+
+# When the SEARCHENGINE tag is enabled doxygen will generate a search box
+# for the HTML output. The underlying search engine uses javascript
+# and DHTML and should work on any modern browser. Note that when using
+# HTML help (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets
+# (GENERATE_DOCSET) there is already a search function so this one should
+# typically be disabled. For large projects the javascript based search engine
+# can be slow, then enabling SERVER_BASED_SEARCH may provide a better solution.
 
 SEARCHENGINE           = YES
 
 # When the SERVER_BASED_SEARCH tag is enabled the search engine will be
-# implemented using a PHP enabled web server instead of at the web client using
-# Javascript. Doxygen will generate the search PHP script and index file to put
-# on the web server. The advantage of the server based approach is that it
-# scales better to large projects and allows full text search. The disadvances
-# is that it is more difficult to setup and does not have live searching
-# capabilities.
+# implemented using a PHP enabled web server instead of at the web client
+# using Javascript. Doxygen will generate the search PHP script and index
+# file to put on the web server. The advantage of the server
+# based approach is that it scales better to large projects and allows
+# full text search. The disadvantages are that it is more difficult to setup
+# and does not have live searching capabilities.
 
 SERVER_BASED_SEARCH    = NO
-# old default
-# SERVER_BASED_SEARCH    = YES
 
 #---------------------------------------------------------------------------
 # configuration options related to the LaTeX output
@@ -1083,7 +1284,7 @@ MAKEINDEX_CMD_NAME     = makeindex
 COMPACT_LATEX          = NO
 
 # The PAPER_TYPE tag can be used to set the paper type that is used
-# by the printer. Possible values are: a4, a4wide, letter, legal and
+# by the printer. Possible values are: a4, letter, legal and
 # executive. If left blank a4wide will be used.
 
 PAPER_TYPE             = a4wide
@@ -1100,6 +1301,13 @@ EXTRA_PACKAGES         = $(WM_PROJECT_DIR)/doc/Doxygen/Macros/tensorOperator
 
 LATEX_HEADER           =
 
+# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for
+# the generated latex document. The footer should contain everything after
+# the last chapter. If it is left blank doxygen will generate a
+# standard footer. Notice: only use this tag if you know what you are doing!
+
+LATEX_FOOTER           =
+
 # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
 # is prepared for conversion to pdf (using ps2pdf). The pdf file will
 # contain links (just like the HTML output) instead of page references
@@ -1126,12 +1334,19 @@ LATEX_BATCHMODE        = NO
 
 LATEX_HIDE_INDICES     = NO
 
-# If LATEX_SOURCE_CODE is set to YES then doxygen will include source code with
-# syntax highlighting in the LaTeX output. Note that which sources are shown
-# also depends on other settings such as SOURCE_BROWSER.
+# If LATEX_SOURCE_CODE is set to YES then doxygen will include
+# source code with syntax highlighting in the LaTeX output.
+# Note that which sources are shown also depends on other settings
+# such as SOURCE_BROWSER.
 
 LATEX_SOURCE_CODE      = NO
 
+# The LATEX_BIB_STYLE tag can be used to specify the style to use for the
+# bibliography, e.g. plainnat, or ieeetr. The default style is "plain". See
+# http://en.wikipedia.org/wiki/BibTeX for more info.
+
+LATEX_BIB_STYLE        = plain
+
 #---------------------------------------------------------------------------
 # configuration options related to the RTF output
 #---------------------------------------------------------------------------
@@ -1163,7 +1378,7 @@ COMPACT_RTF            = NO
 
 RTF_HYPERLINKS         = NO
 
-# Load stylesheet definitions from file. Syntax is similar to doxygen's
+# Load style sheet definitions from file. Syntax is similar to doxygen's
 # config file, i.e. a series of assignments. You only have to provide
 # replacements, missing definitions are set to their default value.
 
@@ -1308,7 +1523,7 @@ MACRO_EXPANSION        = YES
 EXPAND_ONLY_PREDEF     = NO
 
 # If the SEARCH_INCLUDES tag is set to YES (the default) the includes files
-# in the INCLUDE_PATH (see below) will be search if a #include is found.
+# pointed to by INCLUDE_PATH will be searched when a #include is found.
 
 SEARCH_INCLUDES        = NO
 
@@ -1338,15 +1553,15 @@ PREDEFINED             =
 # If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then
 # this tag can be used to specify a list of macro names that should be expanded.
 # The macro definition that is found in the sources will be used.
-# Use the PREDEFINED tag if you want to use a different macro definition.
+# Use the PREDEFINED tag if you want to use a different macro definition that
+# overrules the definition found in the source code.
 
 EXPAND_AS_DEFINED      =
 
 # If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then
-# doxygen's preprocessor will remove all function-like macros that are alone
-# on a line, have an all uppercase name, and do not end with a semicolon. Such
-# function macros are typically used for boiler-plate code, and will confuse
-# the parser if not removed.
+# doxygen's preprocessor will remove all references to function-like macros
+# that are alone on a line, have an all uppercase name, and do not end with a
+# semicolon, because these will confuse the parser if not removed.
 
 SKIP_FUNCTION_MACROS   = YES
 
@@ -1354,22 +1569,18 @@ SKIP_FUNCTION_MACROS   = YES
 # Configuration::additions related to external references
 #---------------------------------------------------------------------------
 
-# The TAGFILES option can be used to specify one or more tagfiles.
-# Optionally an initial location of the external documentation
-# can be added for each tagfile. The format of a tag file without
-# this location is as follows:
+# The TAGFILES option can be used to specify one or more tagfiles. For each
+# tag file the location of the external documentation should be added. The
+# format of a tag file without this location is as follows:
 #
 # TAGFILES = file1 file2 ...
 # Adding location for the tag files is done as follows:
 #
 # TAGFILES = file1=loc1 "file2 = loc2" ...
-# where "loc1" and "loc2" can be relative or absolute paths or
-# URLs. If a location is present for each tag, the installdox tool
-# does not have to be run to correct the links.
-# Note that each tag file must have a unique name
-# (where the name does NOT include the path)
-# If a tag file is not located in the directory in which doxygen
-# is run, you must also specify the path to the tagfile here.
+# where "loc1" and "loc2" can be relative or absolute paths
+# or URLs. Note that each tag file must have a unique name (where the name does
+# NOT include the path). If a tag file is not located in the directory in which
+# doxygen is run, you must also specify the path to the tagfile here.
 
 TAGFILES               =
 
@@ -1402,9 +1613,8 @@ PERL_PATH              = /usr/bin/perl
 # If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will
 # generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base
 # or super classes. Setting the tag to NO turns the diagrams off. Note that
-# this option is superseded by the HAVE_DOT option below. This is only a
-# fallback. It is recommended to install and use dot, since it yields more
-# powerful graphs.
+# this option also works with HAVE_DOT disabled, but it is recommended to
+# install and use dot, since it yields more powerful graphs.
 
 CLASS_DIAGRAMS         = YES
 
@@ -1430,14 +1640,20 @@ HIDE_UNDOC_RELATIONS   = YES
 
 HAVE_DOT               = YES
 
-# By default doxygen will write a font called FreeSans.ttf to the output
-# directory and reference it in all dot files that doxygen generates. This font
-# does not include all possible unicode characters however, so when you need
-# these (or just want a differently looking font) you can specify the font name
-# using DOT_FONTNAME. You need need to make sure dot is able to find the font,
-# which can be done by putting it in a standard location or by setting the
-# DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory
-# containing the font.
+# The DOT_NUM_THREADS specifies the number of dot invocations doxygen is
+# allowed to run in parallel. When set to 0 (the default) doxygen will
+# base this on the number of processors available in the system. You can set it
+# explicitly to a value larger than 0 to get control over the balance
+# between CPU load and processing speed.
+
+DOT_NUM_THREADS        = 0
+
+# By default doxygen will use the Helvetica font for all dot files that
+# doxygen generates. When you want a differently looking font you can specify
+# the font name using DOT_FONTNAME. You need to make sure dot is able to find
+# the font, which can be done by putting it in a standard location or by setting
+# the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
+# directory containing the font.
 
 DOT_FONTNAME           = FreeSans
 
@@ -1446,17 +1662,16 @@ DOT_FONTNAME           = FreeSans
 
 DOT_FONTSIZE           = 10
 
-# By default doxygen will tell dot to use the output directory to look for the
-# FreeSans.ttf font (which doxygen will put there itself). If you specify a
-# different font using DOT_FONTNAME you can set the path where dot
-# can find it using this tag.
+# By default doxygen will tell dot to use the Helvetica font.
+# If you specify a different font using DOT_FONTNAME you can use DOT_FONTPATH to
+# set the path where dot can find it.
 
 DOT_FONTPATH           =
 
 # If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen
 # will generate a graph for each documented class showing the direct and
 # indirect inheritance relations. Setting this tag to YES will force the
-# the CLASS_DIAGRAMS tag to NO.
+# CLASS_DIAGRAMS tag to NO.
 
 CLASS_GRAPH            = YES
 
@@ -1478,6 +1693,15 @@ GROUP_GRAPHS           = YES
 
 UML_LOOK               = NO
 
+# If the UML_LOOK tag is enabled, the fields and methods are shown inside
+# the class node. If there are many fields or methods and many nodes the
+# graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
+# threshold limits the number of items for each type to make the size more
+# managable. Set this to 0 for no limit. Note that the threshold may be
+# exceeded by 50% before the limit is enforced.
+
+UML_LIMIT_NUM_FIELDS   = 10
+
 # If set to YES, the inheritance and collaboration graphs will show the
 # relations between templates and their instances.
 
@@ -1514,11 +1738,11 @@ CALL_GRAPH             = YES
 CALLER_GRAPH           = YES
 
 # If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen
-# will graphical hierarchy of all classes instead of a textual one.
+# will generate a graphical hierarchy of all classes instead of a textual one.
 
 GRAPHICAL_HIERARCHY    = YES
 
-# If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES
+# If the DIRECTORY_GRAPH and HAVE_DOT tags are set to YES
 # then doxygen will show the dependencies a directory has on other directories
 # in a graphical way. The dependency relations are determined by the #include
 # relations between the files in the directories.
@@ -1526,11 +1750,22 @@ GRAPHICAL_HIERARCHY    = YES
 DIRECTORY_GRAPH        = YES
 
 # The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
-# generated by dot. Possible values are png, jpg, or gif
-# If left blank png will be used.
+# generated by dot. Possible values are svg, png, jpg, or gif.
+# If left blank png will be used. If you choose svg you need to set
+# HTML_FILE_EXTENSION to xhtml in order to make the SVG files
+# visible in IE 9+ (other browsers do not have this requirement).
 
 DOT_IMAGE_FORMAT       = png
 
+# If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to
+# enable generation of interactive SVG images that allow zooming and panning.
+# Note that this requires a modern browser other than Internet Explorer.
+# Tested and working are Firefox, Chrome, Safari, and Opera. For IE 9+ you
+# need to set HTML_FILE_EXTENSION to xhtml in order to make the SVG files
+# visible. Older versions of IE do not have SVG support.
+
+INTERACTIVE_SVG        = NO
+
 # The tag DOT_PATH can be used to specify the path where the dot tool can be
 # found. If left blank, it is assumed the dot tool can be found in the path.
 
@@ -1542,6 +1777,12 @@ DOT_PATH               =
 
 DOTFILE_DIRS           =
 
+# The MSCFILE_DIRS tag can be used to specify one or more directories that
+# contain msc files that are included in the documentation (see the
+# \mscfile command).
+
+MSCFILE_DIRS           =
+
 # The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
 # nodes that will be shown in the graph. If the number of nodes in a graph
 # becomes larger than this value, doxygen will truncate the graph, which is
@@ -1560,7 +1801,7 @@ DOT_GRAPH_MAX_NODES    = 50
 # code bases. Also note that the size of a graph can be further restricted by
 # DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
 
-MAX_DOT_GRAPH_DEPTH    = 3
+MAX_DOT_GRAPH_DEPTH    = 1
 
 # Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
 # background. This is disabled by default, because dot on Windows does not
@@ -1587,4 +1828,4 @@ GENERATE_LEGEND        = YES
 # remove the intermediate dot files that are used to generate
 # the various graphs.
 
-DOT_CLEANUP            = YES
+DOT_CLEANUP            = NO
diff --git a/doc/Doxygen/_Footer b/doc/Doxygen/_Footer
index b9f0e767c8b..a9a791baee5 100644
--- a/doc/Doxygen/_Footer
+++ b/doc/Doxygen/_Footer
@@ -2,7 +2,7 @@
   </div> <!-- main -->
   <div class="footer">
     <p>
-      Copyright&nbsp;&copy;&nbsp;2011&nbsp;
+      Copyright&nbsp;&copy;&nbsp;2011-2013&nbsp;
       <a href="http://www.openfoam.org/about">OpenFOAM Foundation</a>
       |
       OPENFOAM&reg; is a registered
diff --git a/doc/Doxygen/_Header b/doc/Doxygen/_Header
index 3889ae86bcc..2b4b441decc 100644
--- a/doc/Doxygen/_Header
+++ b/doc/Doxygen/_Header
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
 <meta http-equiv="Content-Type" content="text/html; charset=UFT-8"/>
-<title> OpenFOAM&reg; programmer's C++ documentation </title>
+<title> OpenFOAM&reg; Programmer's C++ documentation </title>
 <!-- links -->
 <link href="../OpenFOAMdocIcon.png" rel="icon" type="image/png" />
 <link href="search/search.css" rel="stylesheet" type="text/css" />
@@ -34,4 +34,5 @@
   </div>  <!-- header -->
 
   <div class="main">
-  <!-- begin of doxygen-generated content -->
+    <div>
+    <!-- begin of doxygen-generated content -->
diff --git a/doc/Doxygen/css/cfdNav.css b/doc/Doxygen/css/cfdNav.css
index 506d7a6c724..9c590e8695c 100644
--- a/doc/Doxygen/css/cfdNav.css
+++ b/doc/Doxygen/css/cfdNav.css
@@ -326,6 +326,11 @@ nav3-bullet
     color:rgb(42,90,138);
 }
 
+div.navpath, div.summary
+{
+    display: none;
+}
+
 /*main-navigation ************************************************/
 .main-navigation .loginform
 {
diff --git a/doc/Doxygen/css/doxyMod.css b/doc/Doxygen/css/doxyMod.css
index e5909a50dbd..a1b3e7ed0d0 100644
--- a/doc/Doxygen/css/doxyMod.css
+++ b/doc/Doxygen/css/doxyMod.css
@@ -12,6 +12,17 @@
     list-style-type: square;
 }
 
+/* colour and underline to match OpenFOAM style */
+div.title
+{
+    text-align: center;
+    font-size: 150%;
+    color:  #646464;
+    padding-top: 1em;
+    padding-bottom: 1em;
+    margin-bottom: 1em;
+    border-bottom: 7px solid #E1E1E1;
+}
 
 /* colour and underline to match OpenFOAM style */
 .contents h1,
@@ -72,8 +83,12 @@ tr.memlist
 }
 
 .OFTable th {
+    text-align: left;
     padding: 5px;
     border-bottom: 2px solid rgb(175,175,175);
 }
 
+.OFTable td {
+    padding-left: 5px;
+}
 
-- 
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