From b6d458230067b8f3b7788f4e8bec27fc82889ffd Mon Sep 17 00:00:00 2001
From: Henry <Henry>
Date: Mon, 13 Jun 2011 22:31:43 +0100
Subject: [PATCH] Updated doc/Doxygen
---
doc/Doxygen/Allwmake | 8 +
doc/Doxygen/Doxyfile | 496 +++--
doc/Doxygen/Doxygen.css | 76 -
doc/Doxygen/FoamFooter.html | 5 -
doc/Doxygen/FoamHeader.html | 73 -
doc/Doxygen/Macros/tensorOperator.sty | 128 --
doc/{doxygen => Doxygen}/OpenFOAMdocIcon.png | Bin
doc/Doxygen/OpenFOAMicon.png | Bin 1416 -> 1199 bytes
doc/Doxygen/OpenFOAMlogo.jpg | Bin 8524 -> 0 bytes
doc/Doxygen/OpenSourceToolbox.jpg | Bin 10156 -> 0 bytes
doc/Doxygen/OpenSourceToolkit.jpg | Bin 9835 -> 0 bytes
doc/{doxygen => Doxygen}/_Footer | 0
doc/{doxygen => Doxygen}/_Header | 0
doc/{doxygen => Doxygen}/css/cfdLayout.css | 0
doc/{doxygen => Doxygen}/css/cfdNav.css | 0
doc/{doxygen => Doxygen}/css/doxyMod.css | 0
doc/{doxygen => Doxygen}/css/doxyTabs.css | 0
doc/{doxygen => Doxygen}/css/doxygen.css | 0
.../css/img/OpenCFDlogo.png | Bin
.../css/img/bg_bullet_full_1.gif | Bin
.../css/img/bg_bullet_full_2.gif | Bin
.../css/img/bg_bullet_half_1.gif | Bin
.../css/img/bg_bullet_half_2.gif | Bin
.../css/img/bg_corner_topright.gif | Bin
.../css/img/bg_head_corner_topleft_25px.gif | Bin
.../css/img/bg_head_corner_topright_25px.gif | Bin
doc/{doxygen => Doxygen}/css/openfoam.css | 0
doc/Doxygen/tabs.css | 100 --
doc/doxygen/Allwmake | 30 -
doc/doxygen/Doxyfile | 1589 -----------------
doc/doxygen/OpenFOAMicon.png | Bin 1199 -> 0 bytes
31 files changed, 399 insertions(+), 2106 deletions(-)
delete mode 100644 doc/Doxygen/Doxygen.css
delete mode 100644 doc/Doxygen/FoamFooter.html
delete mode 100644 doc/Doxygen/FoamHeader.html
delete mode 100644 doc/Doxygen/Macros/tensorOperator.sty
rename doc/{doxygen => Doxygen}/OpenFOAMdocIcon.png (100%)
delete mode 100644 doc/Doxygen/OpenFOAMlogo.jpg
delete mode 100644 doc/Doxygen/OpenSourceToolbox.jpg
delete mode 100644 doc/Doxygen/OpenSourceToolkit.jpg
rename doc/{doxygen => Doxygen}/_Footer (100%)
rename doc/{doxygen => Doxygen}/_Header (100%)
rename doc/{doxygen => Doxygen}/css/cfdLayout.css (100%)
rename doc/{doxygen => Doxygen}/css/cfdNav.css (100%)
rename doc/{doxygen => Doxygen}/css/doxyMod.css (100%)
rename doc/{doxygen => Doxygen}/css/doxyTabs.css (100%)
rename doc/{doxygen => Doxygen}/css/doxygen.css (100%)
rename doc/{doxygen => Doxygen}/css/img/OpenCFDlogo.png (100%)
rename doc/{doxygen => Doxygen}/css/img/bg_bullet_full_1.gif (100%)
rename doc/{doxygen => Doxygen}/css/img/bg_bullet_full_2.gif (100%)
rename doc/{doxygen => Doxygen}/css/img/bg_bullet_half_1.gif (100%)
rename doc/{doxygen => Doxygen}/css/img/bg_bullet_half_2.gif (100%)
rename doc/{doxygen => Doxygen}/css/img/bg_corner_topright.gif (100%)
rename doc/{doxygen => Doxygen}/css/img/bg_head_corner_topleft_25px.gif (100%)
rename doc/{doxygen => Doxygen}/css/img/bg_head_corner_topright_25px.gif (100%)
rename doc/{doxygen => Doxygen}/css/openfoam.css (100%)
delete mode 100644 doc/Doxygen/tabs.css
delete mode 100755 doc/doxygen/Allwmake
delete mode 100644 doc/doxygen/Doxyfile
delete mode 100644 doc/doxygen/OpenFOAMicon.png
diff --git a/doc/Doxygen/Allwmake b/doc/Doxygen/Allwmake
index a34eb3fd7e0..fbc20d93fd0 100755
--- a/doc/Doxygen/Allwmake
+++ b/doc/Doxygen/Allwmake
@@ -1,5 +1,13 @@
#!/bin/sh
cd ${0%/*} || exit 1 # run from this directory
+
+[ -d "$WM_PROJECT_DIR" ] || {
+ echo "Error: WM_PROJECT_DIR directory does not exist"
+ echo " Check the OpenFOAM entries in your dot-files and source them."
+ echo " WM_PROJECT_DIR=$WM_PROJECT_DIR"
+ exit 1
+}
+
set -x
rm -rf latex man
diff --git a/doc/Doxygen/Doxyfile b/doc/Doxygen/Doxyfile
index 3ef243ee83b..346b976e5b4 100644
--- a/doc/Doxygen/Doxyfile
+++ b/doc/Doxygen/Doxyfile
@@ -1,4 +1,4 @@
-# Doxyfile 1.5.3
+# Doxyfile 1.6.3
# This file describes the settings to be used by the documentation system
# doxygen (www.doxygen.org) for a project
@@ -14,11 +14,11 @@
# Project related configuration options
#---------------------------------------------------------------------------
-# This tag specifies the encoding used for all characters in the config file that
-# follow. The default is UTF-8 which is also the encoding used for all text before
-# the first occurrence of this tag. Doxygen uses libiconv (or the iconv built into
-# libc) for the transcoding. See http://www.gnu.org/software/libiconv for the list of
-# possible encodings.
+# This tag specifies the encoding used for all characters in the config file
+# that follow. The default is UTF-8 which is also the encoding used for all
+# text before the first occurrence of this tag. Doxygen uses libiconv (or the
+# iconv built into libc) for the transcoding. See
+# http://www.gnu.org/software/libiconv for the list of possible encodings.
DOXYFILE_ENCODING = UTF-8
@@ -54,10 +54,11 @@ CREATE_SUBDIRS = NO
# information to generate all constant output in the proper language.
# The default language is English, other supported languages are:
# Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
-# Croatian, Czech, Danish, Dutch, Finnish, French, German, Greek, Hungarian,
-# Italian, Japanese, Japanese-en (Japanese with English messages), Korean,
-# Korean-en, Lithuanian, Norwegian, Polish, Portuguese, Romanian, Russian,
-# Serbian, Slovak, Slovene, Spanish, Swedish, and Ukrainian.
+# Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
+# Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
+# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
+# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak,
+# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
OUTPUT_LANGUAGE = English
@@ -154,13 +155,6 @@ QT_AUTOBRIEF = NO
MULTILINE_CPP_IS_BRIEF = NO
-# If the DETAILS_AT_TOP tag is set to YES then Doxygen
-# will output the detailed description near the top, like JavaDoc.
-# If set to NO, the detailed description appears after the member
-# documentation.
-
-DETAILS_AT_TOP = YES
-
# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented
# member inherits the documentation from any documented member that it
# re-implements.
@@ -195,14 +189,39 @@ ALIASES =
OPTIMIZE_OUTPUT_FOR_C = NO
# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java
-# sources only. Doxygen will then generate output that is more tailored for Java.
-# For instance, namespaces will be presented as packages, qualified scopes
-# will look different, etc.
+# sources only. Doxygen will then generate output that is more tailored for
+# Java. For instance, namespaces will be presented as packages, qualified
+# scopes will look different, etc.
OPTIMIZE_OUTPUT_JAVA = NO
-# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want to
-# include (a tag file for) the STL sources as input, then you should
+# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
+# sources only. Doxygen will then generate output that is more tailored for
+# Fortran.
+
+OPTIMIZE_FOR_FORTRAN = NO
+
+# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
+# sources. Doxygen will then generate output that is tailored for
+# VHDL.
+
+OPTIMIZE_OUTPUT_VHDL = NO
+
+# Doxygen selects the parser to use depending on the extension of the files it
+# parses. With this tag you can assign which parser to use for a given
+# extension. Doxygen has a built-in mapping, but you can override or extend it
+# using this tag. The format is ext=language, where ext is a file extension,
+# and language is one of the parsers supported by doxygen: IDL, Java,
+# Javascript, C#, C, C++, D, PHP, Objective-C, Python, Fortran, VHDL, C,
+# C++. For instance to make doxygen treat .inc files as Fortran files (default
+# is PHP), and .f files as C (default is Fortran), use: inc=Fortran f=C. Note
+# that for custom extensions you also need to set FILE_PATTERNS otherwise the
+# files are not read by doxygen.
+
+EXTENSION_MAPPING =
+
+# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
+# to include (a tag file for) the STL sources as input, then you should
# set this tag to YES in order to let doxygen match functions declarations and
# definitions whose arguments contain STL classes (e.g. func(std::string); v.s.
# func(std::string) {}). This also make the inheritance and collaboration
@@ -215,6 +234,21 @@ BUILTIN_STL_SUPPORT = NO
CPP_CLI_SUPPORT = NO
+# Set the SIP_SUPPORT tag to YES if your project consists of sip sources only.
+# Doxygen will parse them like normal C++ but will assume all classes use public
+# instead of private inheritance when no explicit protection keyword is present.
+
+SIP_SUPPORT = NO
+
+# For Microsoft's IDL there are propget and propput attributes to indicate
+# getter and setter methods for a property. Setting this option to YES (the
+# default) will make doxygen to replace the get and set methods by a property in
+# the documentation. This will only work if the methods are indeed getting or
+# setting a simple type. If this is not the case, or you want to show the
+# methods anyway, you should set this option to NO.
+
+IDL_PROPERTY_SUPPORT = YES
+
# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
# tag is set to YES, then doxygen will reuse the documentation of the first
# member in the group (if any) for the other members of the group. By default
@@ -230,6 +264,32 @@ DISTRIBUTE_GROUP_DOC = NO
SUBGROUPING = YES
+# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum
+# is documented as struct, union, or enum with the name of the typedef. So
+# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
+# with name TypeT. When disabled the typedef will appear as a member of a file,
+# namespace, or class. And the struct will be named TypeS. This can typically
+# be useful for C code in case the coding convention dictates that all compound
+# types are typedef'ed and only the typedef is referenced, never the tag name.
+
+TYPEDEF_HIDES_STRUCT = NO
+
+# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
+# determine which symbols to keep in memory and which to flush to disk.
+# When the cache is full, less often used symbols will be written to disk.
+# For small to medium size projects (<1000 input files) the default value is
+# probably good enough. For larger projects a too small cache size can cause
+# doxygen to be busy swapping symbols to and from disk most of the time
+# causing a significant performance penality.
+# If the system has enough physical memory increasing the cache will improve the
+# performance by keeping more symbols in memory. Note that the value works on
+# a logarithmic scale so increasing the size by one will rougly double the
+# memory usage. The cache size is given by this formula:
+# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
+# corresponding to a cache size of 2^16 = 65536 symbols
+
+SYMBOL_CACHE_SIZE = 0
+
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
@@ -264,10 +324,11 @@ EXTRACT_LOCAL_CLASSES = YES
EXTRACT_LOCAL_METHODS = NO
-# If this flag is set to YES, the members of anonymous namespaces will be extracted
-# and appear in the documentation as a namespace called 'anonymous_namespace{file}',
-# where file will be replaced with the base name of the file that contains the anonymous
-# namespace. By default anonymous namespace are hidden.
+# If this flag is set to YES, the members of anonymous namespaces will be
+# extracted and appear in the documentation as a namespace called
+# 'anonymous_namespace{file}', where file will be replaced with the base
+# name of the file that contains the anonymous namespace. By default
+# anonymous namespace are hidden.
EXTRACT_ANON_NSPACES = NO
@@ -327,6 +388,12 @@ HIDE_SCOPE_NAMES = YES
SHOW_INCLUDE_FILES = NO
+# If the FORCE_LOCAL_INCLUDES tag is set to YES then Doxygen
+# will list include files with double quotes in the documentation
+# rather than with sharp brackets.
+
+FORCE_LOCAL_INCLUDES = NO
+
# If the INLINE_INFO tag is set to YES (the default) then a tag [inline]
# is inserted in the documentation for inline members.
@@ -346,6 +413,21 @@ SORT_MEMBER_DOCS = NO
SORT_BRIEF_DOCS = NO
+# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
+# (brief and detailed) documentation of class members so that constructors and
+# destructors are listed first. If set to NO (the default) the constructors will
+# appear in the respective orders defined by SORT_MEMBER_DOCS and
+# SORT_BRIEF_DOCS. This tag will be ignored for brief docs if SORT_BRIEF_DOCS is
+# set to NO and ignored for detailed docs if SORT_MEMBER_DOCS is set to NO.
+
+SORT_MEMBERS_CTORS_1ST = NO
+
+# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the
+# hierarchy of group names into alphabetical order. If set to NO (the default)
+# the group names will appear in their defined order.
+
+SORT_GROUP_NAMES = NO
+
# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be
# sorted by fully-qualified names, including namespaces. If set to
# NO (the default), the class list will be sorted only by class name,
@@ -407,9 +489,22 @@ SHOW_USED_FILES = YES
SHOW_DIRECTORIES = YES
+# Set the SHOW_FILES tag to NO to disable the generation of the Files page.
+# This will remove the Files entry from the Quick Index and from the
+# Folder Tree View (if specified). The default is YES.
+
+SHOW_FILES = YES
+
+# Set the SHOW_NAMESPACES tag to NO to disable the generation of the
+# Namespaces page.
+# This will remove the Namespaces entry from the Quick Index
+# and from the Folder Tree View (if specified). The default is YES.
+
+SHOW_NAMESPACES = YES
+
# The FILE_VERSION_FILTER tag can be used to specify a program or script that
-# doxygen should invoke to get the current version for each file (typically from the
-# version control system). Doxygen will invoke the program by executing (via
+# doxygen should invoke to get the current version for each file (typically from
+# the version control system). Doxygen will invoke the program by executing (via
# popen()) the command <command> <input-file>, where <command> is the value of
# the FILE_VERSION_FILTER tag, and <input-file> is the name of an input file
# provided by doxygen. Whatever the program writes to standard output
@@ -417,6 +512,15 @@ SHOW_DIRECTORIES = YES
FILE_VERSION_FILTER =
+# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
+# by doxygen. The layout file controls the global structure of the generated
+# output files in an output format independent way. The create the layout file
+# that represents doxygen's defaults, run doxygen with the -l option. You can
+# optionally specify a file name after the option, if omitted DoxygenLayout.xml
+# will be used as the name of the layout file.
+
+LAYOUT_FILE =
+
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
#---------------------------------------------------------------------------
@@ -481,10 +585,18 @@ INPUT = $(WM_PROJECT_DIR)/src \
$(WM_PROJECT_DIR)/applications/utilities \
$(WM_PROJECT_DIR)/applications/solvers
-# This tag can be used to specify the character encoding of the source files that
-# doxygen parses. Internally doxygen uses the UTF-8 encoding, which is also the default
-# input encoding. Doxygen uses libiconv (or the iconv built into libc) for the transcoding.
-# See http://www.gnu.org/software/libiconv for the list of possible encodings.
+# limit input for testing purposes
+# INPUT = $(WM_PROJECT_DIR)/src/OpenFOAM/global \
+# $(WM_PROJECT_DIR)/src/OpenFOAM/containers \
+# $(WM_PROJECT_DIR)/src/OpenFOAM/primitives \
+# $(WM_PROJECT_DIR)/sampling \
+# $(WM_PROJECT_DIR)/src/finiteVolume/fvMesh
+
+# This tag can be used to specify the character encoding of the source files
+# that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
+# also the default input encoding. Doxygen uses libiconv (or the iconv built
+# into libc) for the transcoding. See http://www.gnu.org/software/libiconv for
+# the list of possible encodings.
INPUT_ENCODING = UTF-8
@@ -493,9 +605,10 @@ INPUT_ENCODING = UTF-8
# and *.h) to filter out the source-files in the directories. If left
# blank the following patterns are tested:
# *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx
-# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py
+# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90
-FILE_PATTERNS = *.H *.C
+FILE_PATTERNS = *.H \
+ *.C
# The RECURSIVE tag can be used to turn specify whether or not subdirectories
# should be searched for input files as well. Possible values are YES and NO.
@@ -521,14 +634,14 @@ EXCLUDE_SYMLINKS = NO
# against the file with absolute path, so to exclude all test directories
# for example use the pattern */test/*
-EXCLUDE_PATTERNS = */lnInclude/* \
+EXCLUDE_PATTERNS = */lnInclude/* \
*/t/*
-
# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
-# (namespaces, classes, functions, etc.) that should be excluded from the output.
-# The symbol name can be a fully qualified name, a word, or if the wildcard * is used,
-# a substring. Examples: ANamespace, AClass, AClass::ANamespace, ANamespace::*Test
+# (namespaces, classes, functions, etc.) that should be excluded from the
+# output. The symbol name can be a fully qualified name, a word, or if the
+# wildcard * is used, a substring. Examples: ANamespace, AClass,
+# AClass::ANamespace, ANamespace::*Test
EXCLUDE_SYMBOLS =
@@ -538,7 +651,6 @@ EXCLUDE_SYMBOLS =
EXAMPLE_PATH =
-
# If the value of the EXAMPLE_PATH tag contains directories, you can use the
# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
# and *.h) to filter out the source-files in the directories. If left
@@ -564,14 +676,17 @@ IMAGE_PATH =
# by executing (via popen()) the command <filter> <input-file>, where <filter>
# is the value of the INPUT_FILTER tag, and <input-file> is the name of an
# input file. Doxygen will then use the output that the filter program writes
-# to standard output. If FILTER_PATTERNS is specified, this tag will be
+# to standard output.
+# If FILTER_PATTERNS is specified, this tag will be
# ignored.
INPUT_FILTER = $(WM_PROJECT_DIR)/bin/tools/doxyFilter
# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
-# basis. Doxygen will compare the file name with each pattern and apply the
-# filter if there is a match. The filters are a list of the form:
+# basis.
+# Doxygen will compare the file name with each pattern and apply the
+# filter if there is a match.
+# The filters are a list of the form:
# pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further
# info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER
# is applied to all files.
@@ -591,9 +706,7 @@ FILTER_SOURCE_FILES = NO
# If the SOURCE_BROWSER tag is set to YES then a list of source files will
# be generated. Documented entities will be cross-referenced with these sources.
# Note: To get rid of all source code in the generated output, make sure also
-# VERBATIM_HEADERS is set to NO. If you have enabled CALL_GRAPH or CALLER_GRAPH
-# then you must also enable this option. If you don't then doxygen will produce
-# a warning and turn it on anyway
+# VERBATIM_HEADERS is set to NO.
SOURCE_BROWSER = YES
@@ -608,13 +721,13 @@ INLINE_SOURCES = NO
STRIP_CODE_COMMENTS = YES
-# If the REFERENCED_BY_RELATION tag is set to YES (the default)
+# If the REFERENCED_BY_RELATION tag is set to YES
# then for each documented function all documented
# functions referencing it will be listed.
REFERENCED_BY_RELATION = YES
-# If the REFERENCES_RELATION tag is set to YES (the default)
+# If the REFERENCES_RELATION tag is set to YES
# then for each documented function all documented entities
# called/used by that function will be listed.
@@ -623,7 +736,8 @@ REFERENCES_RELATION = YES
# If the REFERENCES_LINK_SOURCE tag is set to YES (the default)
# and SOURCE_BROWSER tag is set to YES, then the hyperlinks from
# functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will
-# link to the source code. Otherwise they will link to the documentstion.
+# link to the source code.
+# Otherwise they will link to the documentation.
REFERENCES_LINK_SOURCE = YES
@@ -655,7 +769,7 @@ ALPHABETICAL_INDEX = YES
# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns
# in which this list will be split (can be a number in the range [1..20])
-COLS_IN_ALPHA_INDEX = 4
+COLS_IN_ALPHA_INDEX = 1
# In case all classes in a project start with a common prefix, all
# classes will be put under the same header in the alphabetical index.
@@ -673,6 +787,11 @@ IGNORE_PREFIX =
GENERATE_HTML = YES
+# If the HTML_FOOTER_DESCRIPTION tag is set to YES, Doxygen will
+# add generated date, project name and doxygen version to HTML footer.
+
+HTML_FOOTER_DESCRIPTION= NO
+
# The HTML_OUTPUT tag is used to specify where the HTML docs will be put.
# If a relative path is entered the value of OUTPUT_DIRECTORY will be
# put in front of it. If left blank `html' will be used as the default path.
@@ -689,13 +808,13 @@ HTML_FILE_EXTENSION = .html
# each generated HTML page. If it is left blank doxygen will generate a
# standard header.
-HTML_HEADER = $(WM_PROJECT_DIR)/doc/Doxygen/FoamHeader.html
+HTML_HEADER = $(WM_PROJECT_DIR)/doc/Doxygen/_Header
# The HTML_FOOTER tag can be used to specify a personal HTML footer for
# each generated HTML page. If it is left blank doxygen will generate a
# standard footer.
-HTML_FOOTER = $(WM_PROJECT_DIR)/doc/Doxygen/FoamFooter.html
+HTML_FOOTER = $(WM_PROJECT_DIR)/doc/Doxygen/_Footer
# The HTML_STYLESHEET tag can be used to specify a user-defined cascading
# style sheet that is used by each HTML page. It can be used to
@@ -706,19 +825,18 @@ HTML_FOOTER = $(WM_PROJECT_DIR)/doc/Doxygen/FoamFooter.html
HTML_STYLESHEET =
+# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML
+# page will contain the date and time when the page was generated. Setting
+# this to NO can help when comparing the output of multiple runs.
+
+HTML_TIMESTAMP = NO
+
# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
# files or namespaces will be aligned in HTML using tables. If set to
# NO a bullet list will be used.
HTML_ALIGN_MEMBERS = YES
-# If the GENERATE_HTMLHELP tag is set to YES, additional index files
-# will be generated that can be used as input for tools like the
-# Microsoft HTML help workshop to generate a compressed HTML help file (.chm)
-# of the generated HTML documentation.
-
-GENERATE_HTMLHELP = NO
-
# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
# documentation will contain sections that can be hidden and shown after the
# page has loaded. For this to work a browser that supports
@@ -727,6 +845,39 @@ GENERATE_HTMLHELP = NO
HTML_DYNAMIC_SECTIONS = NO
+# If the GENERATE_DOCSET tag is set to YES, additional index files will be
+# generated that can be used as input for Apple's Xcode 3 integrated development
+# environment, introduced with OSX 10.5 (Leopard). To create a documentation
+# set, doxygen will generate a Makefile in the HTML output directory. Running
+# make will produce the docset in that directory and running "make install" will
+# install the docset in ~/Library/Developer/Shared/Documentation/DocSets so that
+# Xcode will find it at startup. See
+# http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more
+# information.
+
+GENERATE_DOCSET = NO
+
+# When GENERATE_DOCSET tag is set to YES, this tag determines the name of the
+# feed. A documentation feed provides an umbrella under which multiple
+# documentation sets from a single provider (such as a company or product suite)
+# can be grouped.
+
+DOCSET_FEEDNAME = "Doxygen generated docs"
+
+# When GENERATE_DOCSET tag is set to YES, this tag specifies a string that
+# should uniquely identify the documentation set bundle. This should be a
+# reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen
+# will append .docset to the name.
+
+DOCSET_BUNDLE_ID = org.doxygen.Project
+
+# If the GENERATE_HTMLHELP tag is set to YES, additional index files
+# will be generated that can be used as input for tools like the
+# Microsoft HTML help workshop to generate a compiled HTML help file (.chm)
+# of the generated HTML documentation.
+
+GENERATE_HTMLHELP = NO
+
# If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can
# be used to specify the file name of the resulting .chm file. You
# can add a path in front of the file if the result should not be
@@ -747,6 +898,12 @@ HHC_LOCATION =
GENERATE_CHI = NO
+# If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING
+# is used to encode HtmlHelp index (hhk), content (hhc) and project file
+# content.
+
+CHM_INDEX_ENCODING =
+
# If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag
# controls whether a binary table of contents is generated (YES) or a
# normal table of contents (NO) in the .chm file.
@@ -758,6 +915,75 @@ BINARY_TOC = NO
TOC_EXPAND = NO
+# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
+# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that
+# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help
+# (.qch) of the generated HTML documentation.
+
+GENERATE_QHP = NO
+
+# If the QHG_LOCATION tag is specified, the QCH_FILE tag can
+# be used to specify the file name of the resulting .qch file.
+# The path specified is relative to the HTML output folder.
+
+QCH_FILE =
+
+# The QHP_NAMESPACE tag specifies the namespace to use when generating
+# Qt Help Project output. For more information please see
+# http://doc.trolltech.com/qthelpproject.html#namespace
+
+QHP_NAMESPACE = org.doxygen.Project
+
+# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating
+# Qt Help Project output. For more information please see
+# http://doc.trolltech.com/qthelpproject.html#virtual-folders
+
+QHP_VIRTUAL_FOLDER = doc
+
+# If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to
+# add. For more information please see
+# http://doc.trolltech.com/qthelpproject.html#custom-filters
+
+QHP_CUST_FILTER_NAME =
+
+# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom
+# filter to add.For more information please see <a
+# href="http://doc.trolltech.com/qthelpproject.html#custom-filters">Qt Help
+# Project / Custom Filters</a>.
+
+QHP_CUST_FILTER_ATTRS =
+
+# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
+# project's filter section matches. <a
+# href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">Qt Help
+# Project / Filter Attributes</a>.
+
+QHP_SECT_FILTER_ATTRS =
+
+# If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can
+# be used to specify the location of Qt's qhelpgenerator.
+# If non-empty doxygen will try to run qhelpgenerator on the generated
+# .qhp file.
+
+QHG_LOCATION =
+
+# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be
+# generated, which together with the HTML files, form an Eclipse help
+# plugin. To install this plugin and make it available under the help contents
+# menu in Eclipse, the contents of the directory containing the HTML and XML
+# files needs to be copied into the plugins directory of eclipse. The name of
+# the directory within the plugins directory should be the same as the
+# ECLIPSE_DOC_ID value. After copying Eclipse needs to be restarted before the
+# help appears.
+
+GENERATE_ECLIPSEHELP = NO
+
+# A unique identifier for the eclipse help plugin. When installing the plugin
+# the directory name containing the HTML and XML files should also have
+# this name.
+
+ECLIPSE_DOC_ID = org.doxygen.Project
+
# The DISABLE_INDEX tag can be used to turn on/off the condensed index at
# top of each HTML page. The value NO (the default) enables the index and
# the value YES disables it.
@@ -769,29 +995,61 @@ DISABLE_INDEX = NO
ENUM_VALUES_PER_LINE = 4
-# If the GENERATE_TREEVIEW tag is set to YES, a side panel will be
-# generated containing a tree-like index structure (just like the one that
+# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
+# structure should be generated to display hierarchical information.
+# If the tag value is set to YES, a side panel will be generated
+# containing a tree-like index structure (just like the one that
# is generated for HTML Help). For this to work a browser that supports
-# JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+,
-# Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are
-# probably better off using the HTML help feature.
+# JavaScript, DHTML, CSS and frames is required (i.e. any modern browser).
+# Windows users are probably better off using the HTML help feature.
GENERATE_TREEVIEW = NO
+# By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories,
+# and Class Hierarchy pages using a tree view instead of an ordered list.
+
+USE_INLINE_TREES = NO
+
# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be
# used to set the initial width (in pixels) of the frame in which the tree
# is shown.
TREEVIEW_WIDTH = 250
+# Use this tag to change the font size of Latex formulas included
+# as images in the HTML documentation. The default is 10. Note that
+# when you change the font size after a successful doxygen run you need
+# to manually remove any form_*.png images from the HTML output directory
+# to force them to be regenerated.
+
+FORMULA_FONTSIZE = 10
+
+# When the SEARCHENGINE tag is enabled doxygen will generate a search box for
+# the HTML output. The underlying search engine uses javascript and DHTML and
+# should work on any modern browser. Note that when using HTML help
+# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET)
+# there is already a search function so this one should typically be
+# disabled. For large projects the javascript based search engine can be slow,
+# then enabling SERVER_BASED_SEARCH may provide a better solution.
+
+SEARCHENGINE = YES
+
+# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
+# implemented using a PHP enabled web server instead of at the web client using
+# Javascript. Doxygen will generate the search PHP script and index file to put
+# on the web server. The advantage of the server based approach is that it
+# scales better to large projects and allows full text search. The disadvances
+# is that it is more difficult to setup and does not have live searching
+# capabilities.
+
+SERVER_BASED_SEARCH = NO
+# old default
+# SERVER_BASED_SEARCH = YES
+
#---------------------------------------------------------------------------
# configuration options related to the LaTeX output
#---------------------------------------------------------------------------
-# Path for OpenCFD LaTeX macros
-
-@INCLUDE_PATH = $(WM_PROJECT_DIR)/doc/Doxygen/Macros/
-
# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
# generate Latex output.
@@ -805,6 +1063,9 @@ LATEX_OUTPUT = latex
# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
# invoked. If left blank `latex' will be used as the default command name.
+# Note that when enabling USE_PDFLATEX this option is only used for
+# generating bitmaps for formulas in the HTML output, but not in the
+# Makefile that is written to the output directory.
LATEX_CMD_NAME = latex
@@ -864,6 +1125,12 @@ LATEX_BATCHMODE = NO
LATEX_HIDE_INDICES = NO
+# If LATEX_SOURCE_CODE is set to YES then doxygen will include source code with
+# syntax highlighting in the LaTeX output. Note that which sources are shown
+# also depends on other settings such as SOURCE_BROWSER.
+
+LATEX_SOURCE_CODE = NO
+
#---------------------------------------------------------------------------
# configuration options related to the RTF output
#---------------------------------------------------------------------------
@@ -1000,8 +1267,10 @@ GENERATE_PERLMOD = NO
PERLMOD_LATEX = NO
# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be
-# nicely formatted so it can be parsed by a human reader. This is useful
-# if you want to understand what is going on. On the other hand, if this
+# nicely formatted so it can be parsed by a human reader.
+# This is useful
+# if you want to understand what is going on.
+# On the other hand, if this
# tag is set to NO the size of the Perl module output will be much smaller
# and Perl will parse it just the same.
@@ -1088,9 +1357,11 @@ SKIP_FUNCTION_MACROS = YES
# Optionally an initial location of the external documentation
# can be added for each tagfile. The format of a tag file without
# this location is as follows:
-# TAGFILES = file1 file2 ...
+#
+# TAGFILES = file1 file2 ...
# Adding location for the tag files is done as follows:
-# TAGFILES = file1=loc1 "file2 = loc2" ...
+#
+# TAGFILES = file1=loc1 "file2 = loc2" ...
# where "loc1" and "loc2" can be relative or absolute paths or
# URLs. If a location is present for each tag, the installdox tool
# does not have to be run to correct the links.
@@ -1137,10 +1408,11 @@ PERL_PATH = /usr/bin/perl
CLASS_DIAGRAMS = YES
# You can define message sequence charts within doxygen comments using the \msc
-# command. Doxygen will then run the mscgen tool (see http://www.mcternan.me.uk/mscgen/) to
-# produce the chart and insert it in the documentation. The MSCGEN_PATH tag allows you to
-# specify the directory where the mscgen tool resides. If left empty the tool is assumed to
-# be found in the default search path.
+# command. Doxygen will then run the mscgen tool (see
+# http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the
+# documentation. The MSCGEN_PATH tag allows you to specify the directory where
+# the mscgen tool resides. If left empty the tool is assumed to be found in the
+# default search path.
MSCGEN_PATH =
@@ -1157,6 +1429,29 @@ HIDE_UNDOC_RELATIONS = YES
HAVE_DOT = YES
+# By default doxygen will write a font called FreeSans.ttf to the output
+# directory and reference it in all dot files that doxygen generates. This font
+# does not include all possible unicode characters however, so when you need
+# these (or just want a differently looking font) you can specify the font name
+# using DOT_FONTNAME. You need need to make sure dot is able to find the font,
+# which can be done by putting it in a standard location or by setting the
+# DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory
+# containing the font.
+
+DOT_FONTNAME = FreeSans
+
+# The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
+# The default size is 10pt.
+
+DOT_FONTSIZE = 10
+
+# By default doxygen will tell dot to use the output directory to look for the
+# FreeSans.ttf font (which doxygen will put there itself). If you specify a
+# different font using DOT_FONTNAME you can set the path where dot
+# can find it using this tag.
+
+DOT_FONTPATH =
+
# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen
# will generate a graph for each documented class showing the direct and
# indirect inheritance relations. Setting this tag to YES will force the
@@ -1201,19 +1496,19 @@ INCLUDE_GRAPH = YES
INCLUDED_BY_GRAPH = YES
-# If the CALL_GRAPH, SOURCE_BROWSER and HAVE_DOT tags are set to YES then doxygen will
-# generate a call dependency graph for every global function or class method.
-# Note that enabling this option will significantly increase the time of a run.
-# So in most cases it will be better to enable call graphs for selected
-# functions only using the \callgraph command.
+# If the CALL_GRAPH and HAVE_DOT options are set to YES then
+# doxygen will generate a call dependency graph for every global function
+# or class method. Note that enabling this option will significantly increase
+# the time of a run. So in most cases it will be better to enable call graphs
+# for selected functions only using the \callgraph command.
CALL_GRAPH = YES
-# If the CALLER_GRAPH, SOURCE_BROWSER and HAVE_DOT tags are set to YES then doxygen will
-# generate a caller dependency graph for every global function or class method.
-# Note that enabling this option will significantly increase the time of a run.
-# So in most cases it will be better to enable caller graphs for selected
-# functions only using the \callergraph command.
+# If the CALLER_GRAPH and HAVE_DOT tags are set to YES then
+# doxygen will generate a caller dependency graph for every global function
+# or class method. Note that enabling this option will significantly increase
+# the time of a run. So in most cases it will be better to enable caller
+# graphs for selected functions only using the \callergraph command.
CALLER_GRAPH = YES
@@ -1246,15 +1541,15 @@ DOT_PATH =
DOTFILE_DIRS =
-# The MAX_DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
+# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
# nodes that will be shown in the graph. If the number of nodes in a graph
# becomes larger than this value, doxygen will truncate the graph, which is
-# visualized by representing a node as a red box. Note that if the number
-# of direct children of the root node in a graph is already larger than
-# MAX_DOT_GRAPH_NOTES then the graph will not be shown at all. Also note
+# visualized by representing a node as a red box. Note that doxygen if the
+# number of direct children of the root node in a graph is already larger than
+# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note
# that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
-DOT_GRAPH_MAX_NODES = 10
+DOT_GRAPH_MAX_NODES = 50
# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the
# graphs generated by dot. A depth value of 3 means that only nodes reachable
@@ -1264,13 +1559,13 @@ DOT_GRAPH_MAX_NODES = 10
# code bases. Also note that the size of a graph can be further restricted by
# DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
-MAX_DOT_GRAPH_DEPTH = 1
+MAX_DOT_GRAPH_DEPTH = 3
# Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
-# background. This is disabled by default, which results in a white background.
-# Warning: Depending on the platform used, enabling this option may lead to
-# badly anti-aliased labels on the edges of a graph (i.e. they become hard to
-# read).
+# background. This is disabled by default, because dot on Windows does not
+# seem to support this out of the box. Warning: Depending on the platform used,
+# enabling this option may lead to badly anti-aliased labels on the edges of
+# a graph (i.e. they become hard to read).
DOT_TRANSPARENT = YES
@@ -1292,12 +1587,3 @@ GENERATE_LEGEND = YES
# the various graphs.
DOT_CLEANUP = YES
-
-#---------------------------------------------------------------------------
-# Configuration::additions related to the search engine
-#---------------------------------------------------------------------------
-
-# The SEARCHENGINE tag specifies whether or not a search engine should be
-# used. If set to NO the values of all tags below this one will be ignored.
-
-SEARCHENGINE = YES
diff --git a/doc/Doxygen/Doxygen.css b/doc/Doxygen/Doxygen.css
deleted file mode 100644
index 24955d35f27..00000000000
--- a/doc/Doxygen/Doxygen.css
+++ /dev/null
@@ -1,76 +0,0 @@
-body { color: #000000 ; background: #ffffff; margin: 0px; font-family: verdana, arial, helvetica, sans-serif; text-decoration: none; font-size: 12px; }
-a:link { text-decoration: none; color: #0000ff ; }
-a:link:hover { text-decoration: none; color: #0000ff ; }
-a:visited { text-decoration: none; color: #0000ff ; }
-a:visited:hover { text-decoration: none; color: #0000ff ; }
-a:link img { border: 0; }
-a:visited img { border: 0; }
-a:active img { border: 0; }
-a.menuLefton { color: #0000ff; font-size: 12px; font-weight: bold; }
-td.leftmenu { font-family: verdana, arial, helvetica, sans-serif; text-decoration: none; background: #ddddff; text-align: left; font-size: 14px; height: 20px; width: 200px; }
-a.menuTopoff { color: #000000; font-size: 14px; }
-a.menuTopoff:visited { color: #000000; font-size: 14px; }
-a.menuTopoff:hover { color: #0000ff; font-size: 14px; }
-td.topmenu { font-family: verdana, arial, helvetica, sans-serif; background: #ddddff; text-align: center; font-size: 16px; width: 150px; font-weight: bold; }
-h1 { font-size: 18px; }
-h2 { font-size: 16px; }
-h3 { font-size: 14px; }
-
-/* formatting for member functions:
- * Since the OpenFOAM code already has nice line-breaks, wrapping the lines
- * just looks terrible.
- * Give a slightly different background to make it easier to find.
-*/
-.memitem {
- padding: 4px;
- background-color: #eef3f5;
- border-width: 1px;
- border-style: solid;
- border-color: #dedeee;
-}
-
-.memproto {
- background-color: #d5e1e8;
- width: 100%;
- border-width: 1px;
- border-style: solid;
- border-color: #84b0c7;
- font-weight: bold;
-}
-
-table.memname {
- width: 100%;
- background: #f7f7ff;
- white-space: nowrap;
-}
-
-
-.indexkey {
- vertical-align: top;
- background: #f7f7ff;
-}
-
-.indexvalue {
- vertical-align: top;
- background: #f7f7ff;
-}
-
-.paramkey {
- width: 5%;
-}
-
-.memItemLeft {
- background: #f7f7ff;
-}
-
-.memItemRight {
- background: #f7f7ff;
-}
-
-.mdescLeft {
- margin: 0px;
-}
-
-.mdescRight {
- font-style: italic;
-}
diff --git a/doc/Doxygen/FoamFooter.html b/doc/Doxygen/FoamFooter.html
deleted file mode 100644
index 3e70a02e792..00000000000
--- a/doc/Doxygen/FoamFooter.html
+++ /dev/null
@@ -1,5 +0,0 @@
-Copyright © 2000-2010 <a href="http://www.openfoam.com/about">OpenCFD Ltd.</a>
-</td></tr>
-</table>
-</body>
-</html>
diff --git a/doc/Doxygen/FoamHeader.html b/doc/Doxygen/FoamHeader.html
deleted file mode 100644
index e67053d4ae8..00000000000
--- a/doc/Doxygen/FoamHeader.html
+++ /dev/null
@@ -1,73 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
- "http://www.w3.org/TR/html4/loose.dtd">
-<html>
-<head>
- <title> OpenFOAM programmer's C++ documentation </title>
-<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-<!-- html,info -->
-<link rel="stylesheet" type="text/css" href="../Doxygen.css">
-<link rel="stylesheet" type="text/css" href="../tabs.css">
-<link href="../OpenFOAMicon.png" type="image/png" rel="icon" />
-<meta name="keywords" content="computational fluid dynamics, CFD, OpenCFD, OpenFOAM, open source CFD, open source">
-<meta name="description" content="OpenCFD Ltd, leaders in open source Computational Fluid Dynamics (CFD), the developers and maintainers of OpenFOAM: the open source CFD toolbox. We supply support and contracted developments for OpenFOAM">
-</head>
-<body>
-<a id="openfoam"> </a>
-<!-- Top banner -->
-<table
- style="border-width: 0px; width: 800px; background: #ddddff;"
- cellspacing="0" cellpadding="0">
-<tr>
-<td style="width: 9px; height:54px"></td>
-<td style="width: 250px; height:54px; vertical-align:middle;
- horizontal-align: left;">
-<img alt="OpenFOAM logo" src="../OpenFOAMlogo.jpg"> </td>
-<td style="width:350px; height:54px; vertical-align:middle;
-horizontal-align: left; ">
- <table>
- <tr>
- <td><img alt="The Open Source CFD Toolbox" src="../OpenSourceToolbox.jpg"></td>
- </tr>
- </table>
-</td>
-</tr>
-</table>
-<!-- Button banner -->
-<table
- style="border-width: 0px; width: 800px; background: #ffffff;"
- cellspacing="0" cellpadding="0">
-<tr>
-<td valign="top">
- <table width="801" border="0" cellspacing="1" cellpadding="0" bgcolor="#ffffff">
- <tr>
- <td class="leftmenu">
- <a href="http://foam.sourceforge.net/doc/Doxygen/html"
- class="menuLefton">Source Guide</a>
- </td>
- <td class="topmenu">
- <a href="http://www.openfoam.com/about/"
- class="menuTopoff">OpenCFD</a>
- </td>
- <td class="topmenu">
- <a href="http://www.openfoam.com/features/"
- class="menuTopoff">Features</a>
- </td>
- <td class="topmenu">
- <a href="http://www.openfoam.com/contact/"
- class="menuTopoff">Contact</a>
- </td>
- <td class="topmenu">
- <a href="http://www.openfoam.com/"
- class="menuTopoff">OpenFOAM</a>
- </td>
- </tr>
- <tr><td></td></tr>
- </table>
-</td>
-</tr>
-</table>
-<table
- style="border-width: 0px; width: 800px; background: #ffffff;"
- cellspacing="5" cellpadding="0">
-<tr>
-<td>
diff --git a/doc/Doxygen/Macros/tensorOperator.sty b/doc/Doxygen/Macros/tensorOperator.sty
deleted file mode 100644
index 60b2234b82b..00000000000
--- a/doc/Doxygen/Macros/tensorOperator.sty
+++ /dev/null
@@ -1,128 +0,0 @@
-%-----------------------------------------------------------------------------
-% ========= |
-% \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
-% \\ / O peration |
-% \\ / A nd | Copyright (C) 2004-2010 OpenCFD Ltd.
-% \\/ M anipulation |
-%------------------------------------------------------------------------------
-% License
-% This file is part of OpenFOAM.
-%
-% OpenFOAM is free software: you can redistribute it and/or modify it
-% under the terms of the GNU General Public License as published by
-% the Free Software Foundation, either version 3 of the License, or
-% (at your option) any later version.
-%
-% OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
-% for more details.
-%
-% You should have received a copy of the GNU General Public License
-% along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-%
-% LaTeX Style file
-% tensorOperator.sty
-%
-% Description
-% Standard OpenCFD LaTeX macros for typesetting tensor algebra.
-%
-%------------------------------------------------------------------------------
-
-% tensor style
-% ~~~~~~~~~~~~
-\renewcommand{\vec}[1] {\ensuremath{\mathbf #1}}
-\newcommand{\gvec}[1] {\ensuremath{\mbox{\boldmath$\bf#1$}}}
-
-% products
-% ~~~~~~~~
-\newcommand{\anyprod}{\star}
-\newcommand{\cprod} {\times}
-\newcommand{\dprod} {\,{\scriptscriptstyle \stackrel{\bullet}{{}}}\,}
-\newcommand{\ddprod} {\,{\scriptscriptstyle \stackrel{\bullet}{\bullet}}\,}
-\newcommand{\tdprod} {\,{\scriptscriptstyle \stackrel{3}{\bullet}}\,}
-\newcommand{\tprod} {\,{\scriptscriptstyle \stackrel{\otimes}{{}}}\,}
-
-% operations
-% ~~~~~~~~~~
-\newcommand{\adj} {\ensuremath{\operatorname{adj}}}
-\newcommand{\cof} {\ensuremath{\operatorname{cof}}}
-\newcommand{\diag} {\ensuremath{\operatorname{diag}}}
-\newcommand{\dev} {\ensuremath{\operatorname{dev}}}
-
-\newcommand{\Hodge} {\ensuremath{\operatorname{\stackrel{\displaystyle \ast}{}}}}
-\newcommand{\hyd} {\ensuremath{\operatorname{hyd}}}
-\renewcommand{\max} {\ensuremath{\operatorname{max}}}
-\renewcommand{\min} {\ensuremath{\operatorname{min}}}
-\newcommand{\inv} {\ensuremath{\operatorname{inv}}}
-\newcommand{\sym} {\ensuremath{\operatorname{symm}}} % symm ?
-\newcommand{\skw} {\ensuremath{\operatorname{skew}}} % skew already defined
-\newcommand{\tr} {\ensuremath{\operatorname{tr}}}
-\newcommand{\trans}[1] {\ensuremath{#1^{\operatorname{T}}}}
-
-% alternative tensor operators for hypersonics etc.
-% ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-\newcommand{\devs}[1] {\overset{\scriptscriptstyle\circ}{#1}}
-%\newcommand{\trans}[1] {\ensuremath{#1^{\operatorname{T}}}}
-\newcommand{\symms}[1] {\overleftrightarrow{#1}}
-\newlength{\skewslength}
-\newlength{\skewsheight}
-\newcommand{\skews}[1]{
- \settowidth{\skewslength}{#1}%
- \settoheight{\skewsheight}{#1}%
- \addtolength{\skewsheight}{0.4mm}%
- {\overleftrightarrow{#1}\hspace{-.5\skewslength}%
- \rule[\skewsheight]{.4pt}{1.4mm}
- \hspace{.5\skewslength}%
-}}
-%\newcommand{\skew}[1] {\ensuremath{#1^{\operatorname{A}}}}
-
-% spatial derivatives
-% ~~~~~~~~~~~~~~~~~~~
-\newcommand{\curl}{\ensuremath{\nabla\cprod}}
-\renewcommand{\div} {\ensuremath{\nabla\dprod}}
-\newcommand{\grad}{\ensuremath{\nabla}}
-\newcommand{\laplacian}{\ensuremath{\nabla^{2}}}
-
-% temporal derivatives
-% ~~~~~~~~~~~~~~~~~~~~
-\newcommand{\ddt}[1] {\ensuremath{\frac{\partial #1}{\partial t }}}
-\newcommand{\DDt}[1] {\ensuremath{\frac{D #1}{D t}}}
-\newcommand{\DpDt}[2] {\ensuremath{\frac{d_{#1} #2}{d t }}}
-\newcommand{\dsdts}[1] {\ensuremath{\frac{\partial ^2 #1}{\partial t^2}}}
-\newcommand{\rate}[1] {\ensuremath{\dot{#1}}}
-
-\newcommand{\genDer}{\mathcal{L}}
-
-% time average symbols
-% ~~~~~~~~~~~~~~~~~~~~
-\newcommand{\av}[1] {\ensuremath{\overline{#1}}}
-\newcommand{\corrtwo}[2] {{\dwea{\dprime{#1} \dprime{#2}}}}
-\newcommand{\curly}[1] {{\cal #1}}
-\newcommand{\dprime}[1] {\ensuremath{{#1}^{^{\prime \prime}}}}
-\newcommand{\dwea}[1] {\ensuremath{\widetilde{#1}}}
-\newcommand{\dweafluc}[1] {\ensuremath{\dprime{#1}}}
-\newcommand{\fluc}[1] {\ensuremath{#1^{\prime}}}
-
-% index style
-% ~~~~~~~~~~~
-\newcommand{\veci}[2][i] {\ensuremath{#2_{#1}}}
-\newcommand{\teni}[2][ij] {\ensuremath{#2_{#1}}}
-\newcommand{\tenTi}[2][ji] {\ensuremath{#2_{#1}}}
-
-% index operations
-% ~~~~~~~~~~~~~~~~
-\newcommand{\deltai}[1] {\ensuremath{\partial_{#1}}}
-
-% Sub-subscripts
-% ~~~~~~~~~~~~~~
-\newcommand{\eff} {{\scriptscriptstyle e\!f\!\!f\!}}
-
-% unknown use
-% ~~~~~~~~~~~
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diff --git a/doc/doxygen/_Footer b/doc/Doxygen/_Footer
similarity index 100%
rename from doc/doxygen/_Footer
rename to doc/Doxygen/_Footer
diff --git a/doc/doxygen/_Header b/doc/Doxygen/_Header
similarity index 100%
rename from doc/doxygen/_Header
rename to doc/Doxygen/_Header
diff --git a/doc/doxygen/css/cfdLayout.css b/doc/Doxygen/css/cfdLayout.css
similarity index 100%
rename from doc/doxygen/css/cfdLayout.css
rename to doc/Doxygen/css/cfdLayout.css
diff --git a/doc/doxygen/css/cfdNav.css b/doc/Doxygen/css/cfdNav.css
similarity index 100%
rename from doc/doxygen/css/cfdNav.css
rename to doc/Doxygen/css/cfdNav.css
diff --git a/doc/doxygen/css/doxyMod.css b/doc/Doxygen/css/doxyMod.css
similarity index 100%
rename from doc/doxygen/css/doxyMod.css
rename to doc/Doxygen/css/doxyMod.css
diff --git a/doc/doxygen/css/doxyTabs.css b/doc/Doxygen/css/doxyTabs.css
similarity index 100%
rename from doc/doxygen/css/doxyTabs.css
rename to doc/Doxygen/css/doxyTabs.css
diff --git a/doc/doxygen/css/doxygen.css b/doc/Doxygen/css/doxygen.css
similarity index 100%
rename from doc/doxygen/css/doxygen.css
rename to doc/Doxygen/css/doxygen.css
diff --git a/doc/doxygen/css/img/OpenCFDlogo.png b/doc/Doxygen/css/img/OpenCFDlogo.png
similarity index 100%
rename from doc/doxygen/css/img/OpenCFDlogo.png
rename to doc/Doxygen/css/img/OpenCFDlogo.png
diff --git a/doc/doxygen/css/img/bg_bullet_full_1.gif b/doc/Doxygen/css/img/bg_bullet_full_1.gif
similarity index 100%
rename from doc/doxygen/css/img/bg_bullet_full_1.gif
rename to doc/Doxygen/css/img/bg_bullet_full_1.gif
diff --git a/doc/doxygen/css/img/bg_bullet_full_2.gif b/doc/Doxygen/css/img/bg_bullet_full_2.gif
similarity index 100%
rename from doc/doxygen/css/img/bg_bullet_full_2.gif
rename to doc/Doxygen/css/img/bg_bullet_full_2.gif
diff --git a/doc/doxygen/css/img/bg_bullet_half_1.gif b/doc/Doxygen/css/img/bg_bullet_half_1.gif
similarity index 100%
rename from doc/doxygen/css/img/bg_bullet_half_1.gif
rename to doc/Doxygen/css/img/bg_bullet_half_1.gif
diff --git a/doc/doxygen/css/img/bg_bullet_half_2.gif b/doc/Doxygen/css/img/bg_bullet_half_2.gif
similarity index 100%
rename from doc/doxygen/css/img/bg_bullet_half_2.gif
rename to doc/Doxygen/css/img/bg_bullet_half_2.gif
diff --git a/doc/doxygen/css/img/bg_corner_topright.gif b/doc/Doxygen/css/img/bg_corner_topright.gif
similarity index 100%
rename from doc/doxygen/css/img/bg_corner_topright.gif
rename to doc/Doxygen/css/img/bg_corner_topright.gif
diff --git a/doc/doxygen/css/img/bg_head_corner_topleft_25px.gif b/doc/Doxygen/css/img/bg_head_corner_topleft_25px.gif
similarity index 100%
rename from doc/doxygen/css/img/bg_head_corner_topleft_25px.gif
rename to doc/Doxygen/css/img/bg_head_corner_topleft_25px.gif
diff --git a/doc/doxygen/css/img/bg_head_corner_topright_25px.gif b/doc/Doxygen/css/img/bg_head_corner_topright_25px.gif
similarity index 100%
rename from doc/doxygen/css/img/bg_head_corner_topright_25px.gif
rename to doc/Doxygen/css/img/bg_head_corner_topright_25px.gif
diff --git a/doc/doxygen/css/openfoam.css b/doc/Doxygen/css/openfoam.css
similarity index 100%
rename from doc/doxygen/css/openfoam.css
rename to doc/Doxygen/css/openfoam.css
diff --git a/doc/Doxygen/tabs.css b/doc/Doxygen/tabs.css
deleted file mode 100644
index 3c567bb529a..00000000000
--- a/doc/Doxygen/tabs.css
+++ /dev/null
@@ -1,100 +0,0 @@
-/* tabs styles, based on http://www.alistapart.com/articles/slidingdoors */
-
-div.tabs
-{
- float : left;
- width : 100%;
- margin-bottom : 2px;
- padding-bottom : 6px;
-}
-
-div.tabs ul
-{
- margin : 0px;
- padding-left : 0px;
- border-right : 1px solid #84B0C7;
- list-style : none;
-}
-
-div.tabs li, div.tabs form
-{
- display : inline;
- margin : 0px;
- padding : 0px;
-}
-
-div.tabs form
-{
- float : left;
- padding : 0px 9px;
-}
-
-div.tabs a
-{
- float : left;
- font-size : 12px;
- font-weight : bold;
- text-decoration : none;
- border-right : 1px solid #000000;
-}
-
-div.tabs a:hover
-{
- background-position: 100% -150px;
-}
-
-div.tabs a:link, div.tabs a:visited, div.tabs a:active, div.tabs a:hover
-{
- color : #000000;
-}
-
-div.tabs span
-{
- float : left;
- display : block;
- padding : 0px 9px;
- white-space : nowrap;
-}
-
-div.tabs input
-{
- float : right;
- display : inline;
- font-size : 12px;
-}
-
-div.tabs td
-{
- font-size : 12px;
- font-weight : bold;
- text-decoration : none;
-}
-
-/* Commented backslash hack hides rule from IE5-Mac \*/
-div.tabs span { float : none; }
-/* End IE5-Mac hack */
-
-div.tabs a:hover span
-{
- background-position: 0% -150px;
-}
-
-div.tabs li#current a
-{
- border-width : 0px;
- border-right : 1px solid #000000;
- color : #0000ff;
-}
-
-div.tabs li#current span
-{
- padding-bottom : 0px;
-}
-
-div.nav
-{
- background : none;
- border : none;
- border-bottom : 1px solid #000000;
-}
-
diff --git a/doc/doxygen/Allwmake b/doc/doxygen/Allwmake
deleted file mode 100755
index fbc20d93fd0..00000000000
--- a/doc/doxygen/Allwmake
+++ /dev/null
@@ -1,30 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-[ -d "$WM_PROJECT_DIR" ] || {
- echo "Error: WM_PROJECT_DIR directory does not exist"
- echo " Check the OpenFOAM entries in your dot-files and source them."
- echo " WM_PROJECT_DIR=$WM_PROJECT_DIR"
- exit 1
-}
-
-set -x
-
-rm -rf latex man
-
-# remove html directory in background
-mv html html-stagedRemove$$ 2> /dev/null
-rm -rf html-stagedRemove$$ >/dev/null 2>&1 &
-
-# ensure that created files are readable by everyone
-umask 22
-doxygen
-
-# fix permissions (NB: '+X' and not '+x'!)
-chmod -R a+rX html latex man 2>/dev/null
-
-echo
-echo "Done doxygen"
-echo
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/doc/doxygen/Doxyfile b/doc/doxygen/Doxyfile
deleted file mode 100644
index 35d29e2ce71..00000000000
--- a/doc/doxygen/Doxyfile
+++ /dev/null
@@ -1,1589 +0,0 @@
-# Doxyfile 1.6.3
-
-# This file describes the settings to be used by the documentation system
-# doxygen (www.doxygen.org) for a project
-#
-# All text after a hash (#) is considered a comment and will be ignored
-# The format is:
-# TAG = value [value, ...]
-# For lists items can also be appended using:
-# TAG += value [value, ...]
-# Values that contain spaces should be placed between quotes (" ")
-
-#---------------------------------------------------------------------------
-# Project related configuration options
-#---------------------------------------------------------------------------
-
-# This tag specifies the encoding used for all characters in the config file
-# that follow. The default is UTF-8 which is also the encoding used for all
-# text before the first occurrence of this tag. Doxygen uses libiconv (or the
-# iconv built into libc) for the transcoding. See
-# http://www.gnu.org/software/libiconv for the list of possible encodings.
-
-DOXYFILE_ENCODING = UTF-8
-
-# The PROJECT_NAME tag is a single word (or a sequence of words surrounded
-# by quotes) that should identify the project.
-
-PROJECT_NAME = OpenFOAM-$(WM_PROJECT_VERSION)
-
-# The PROJECT_NUMBER tag can be used to enter a project or revision number.
-# This could be handy for archiving the generated documentation or
-# if some version control system is used.
-
-PROJECT_NUMBER =
-
-# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
-# base path where the generated documentation will be put.
-# If a relative path is entered, it will be relative to the location
-# where doxygen was started. If left blank the current directory will be used.
-
-OUTPUT_DIRECTORY =
-
-# If the CREATE_SUBDIRS tag is set to YES, then doxygen will create
-# 4096 sub-directories (in 2 levels) under the output directory of each output
-# format and will distribute the generated files over these directories.
-# Enabling this option can be useful when feeding doxygen a huge amount of
-# source files, where putting all generated files in the same directory would
-# otherwise cause performance problems for the file system.
-
-CREATE_SUBDIRS = NO
-
-# The OUTPUT_LANGUAGE tag is used to specify the language in which all
-# documentation generated by doxygen is written. Doxygen will use this
-# information to generate all constant output in the proper language.
-# The default language is English, other supported languages are:
-# Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
-# Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
-# Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
-# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
-# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak,
-# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
-
-OUTPUT_LANGUAGE = English
-
-# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will
-# include brief member descriptions after the members that are listed in
-# the file and class documentation (similar to JavaDoc).
-# Set to NO to disable this.
-
-BRIEF_MEMBER_DESC = YES
-
-# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend
-# the brief description of a member or function before the detailed description.
-# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
-# brief descriptions will be completely suppressed.
-
-REPEAT_BRIEF = YES
-
-# This tag implements a quasi-intelligent brief description abbreviator
-# that is used to form the text in various listings. Each string
-# in this list, if found as the leading text of the brief description, will be
-# stripped from the text and the result after processing the whole list, is
-# used as the annotated text. Otherwise, the brief description is used as-is.
-# If left blank, the following values are used ("$name" is automatically
-# replaced with the name of the entity): "The $name class" "The $name widget"
-# "The $name file" "is" "provides" "specifies" "contains"
-# "represents" "a" "an" "the"
-
-ABBREVIATE_BRIEF =
-
-# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
-# Doxygen will generate a detailed section even if there is only a brief
-# description.
-
-ALWAYS_DETAILED_SEC = NO
-
-# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
-# inherited members of a class in the documentation of that class as if those
-# members were ordinary class members. Constructors, destructors and assignment
-# operators of the base classes will not be shown.
-
-INLINE_INHERITED_MEMB = NO
-
-# If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full
-# path before files name in the file list and in the header files. If set
-# to NO the shortest path that makes the file name unique will be used.
-
-FULL_PATH_NAMES = YES
-
-# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag
-# can be used to strip a user-defined part of the path. Stripping is
-# only done if one of the specified strings matches the left-hand part of
-# the path. The tag can be used to show relative paths in the file list.
-# If left blank the directory from which doxygen is run is used as the
-# path to strip.
-
-STRIP_FROM_PATH = $(WM_PROJECT_DIR)
-
-# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of
-# the path mentioned in the documentation of a class, which tells
-# the reader which header file to include in order to use a class.
-# If left blank only the name of the header file containing the class
-# definition is used. Otherwise one should specify the include paths that
-# are normally passed to the compiler using the -I flag.
-
-STRIP_FROM_INC_PATH =
-
-# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter
-# (but less readable) file names. This can be useful is your file systems
-# doesn't support long names like on DOS, Mac, or CD-ROM.
-
-SHORT_NAMES = NO
-
-# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen
-# will interpret the first line (until the first dot) of a JavaDoc-style
-# comment as the brief description. If set to NO, the JavaDoc
-# comments will behave just like regular Qt-style comments
-# (thus requiring an explicit @brief command for a brief description.)
-
-JAVADOC_AUTOBRIEF = NO
-
-# If the QT_AUTOBRIEF tag is set to YES then Doxygen will
-# interpret the first line (until the first dot) of a Qt-style
-# comment as the brief description. If set to NO, the comments
-# will behave just like regular Qt-style comments (thus requiring
-# an explicit \brief command for a brief description.)
-
-QT_AUTOBRIEF = NO
-
-# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen
-# treat a multi-line C++ special comment block (i.e. a block of //! or ///
-# comments) as a brief description. This used to be the default behaviour.
-# The new default is to treat a multi-line C++ comment block as a detailed
-# description. Set this tag to YES if you prefer the old behaviour instead.
-
-MULTILINE_CPP_IS_BRIEF = NO
-
-# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented
-# member inherits the documentation from any documented member that it
-# re-implements.
-
-INHERIT_DOCS = YES
-
-# If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce
-# a new page for each member. If set to NO, the documentation of a member will
-# be part of the file/class/namespace that contains it.
-
-SEPARATE_MEMBER_PAGES = NO
-
-# The TAB_SIZE tag can be used to set the number of spaces in a tab.
-# Doxygen uses this value to replace tabs by spaces in code fragments.
-
-TAB_SIZE = 4
-
-# This tag can be used to specify a number of aliases that acts
-# as commands in the documentation. An alias has the form "name=value".
-# For example adding "sideeffect=\par Side Effects:\n" will allow you to
-# put the command \sideeffect (or @sideeffect) in the documentation, which
-# will result in a user-defined paragraph with heading "Side Effects:".
-# You can put \n's in the value part of an alias to insert newlines.
-
-ALIASES =
-
-# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C
-# sources only. Doxygen will then generate output that is more tailored for C.
-# For instance, some of the names that are used will be different. The list
-# of all members will be omitted, etc.
-
-OPTIMIZE_OUTPUT_FOR_C = NO
-
-# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java
-# sources only. Doxygen will then generate output that is more tailored for
-# Java. For instance, namespaces will be presented as packages, qualified
-# scopes will look different, etc.
-
-OPTIMIZE_OUTPUT_JAVA = NO
-
-# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
-# sources only. Doxygen will then generate output that is more tailored for
-# Fortran.
-
-OPTIMIZE_FOR_FORTRAN = NO
-
-# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
-# sources. Doxygen will then generate output that is tailored for
-# VHDL.
-
-OPTIMIZE_OUTPUT_VHDL = NO
-
-# Doxygen selects the parser to use depending on the extension of the files it
-# parses. With this tag you can assign which parser to use for a given
-# extension. Doxygen has a built-in mapping, but you can override or extend it
-# using this tag. The format is ext=language, where ext is a file extension,
-# and language is one of the parsers supported by doxygen: IDL, Java,
-# Javascript, C#, C, C++, D, PHP, Objective-C, Python, Fortran, VHDL, C,
-# C++. For instance to make doxygen treat .inc files as Fortran files (default
-# is PHP), and .f files as C (default is Fortran), use: inc=Fortran f=C. Note
-# that for custom extensions you also need to set FILE_PATTERNS otherwise the
-# files are not read by doxygen.
-
-EXTENSION_MAPPING =
-
-# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
-# to include (a tag file for) the STL sources as input, then you should
-# set this tag to YES in order to let doxygen match functions declarations and
-# definitions whose arguments contain STL classes (e.g. func(std::string); v.s.
-# func(std::string) {}). This also make the inheritance and collaboration
-# diagrams that involve STL classes more complete and accurate.
-
-BUILTIN_STL_SUPPORT = NO
-
-# If you use Microsoft's C++/CLI language, you should set this option to YES to
-# enable parsing support.
-
-CPP_CLI_SUPPORT = NO
-
-# Set the SIP_SUPPORT tag to YES if your project consists of sip sources only.
-# Doxygen will parse them like normal C++ but will assume all classes use public
-# instead of private inheritance when no explicit protection keyword is present.
-
-SIP_SUPPORT = NO
-
-# For Microsoft's IDL there are propget and propput attributes to indicate
-# getter and setter methods for a property. Setting this option to YES (the
-# default) will make doxygen to replace the get and set methods by a property in
-# the documentation. This will only work if the methods are indeed getting or
-# setting a simple type. If this is not the case, or you want to show the
-# methods anyway, you should set this option to NO.
-
-IDL_PROPERTY_SUPPORT = YES
-
-# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
-# tag is set to YES, then doxygen will reuse the documentation of the first
-# member in the group (if any) for the other members of the group. By default
-# all members of a group must be documented explicitly.
-
-DISTRIBUTE_GROUP_DOC = NO
-
-# Set the SUBGROUPING tag to YES (the default) to allow class member groups of
-# the same type (for instance a group of public functions) to be put as a
-# subgroup of that type (e.g. under the Public Functions section). Set it to
-# NO to prevent subgrouping. Alternatively, this can be done per class using
-# the \nosubgrouping command.
-
-SUBGROUPING = YES
-
-# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum
-# is documented as struct, union, or enum with the name of the typedef. So
-# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
-# with name TypeT. When disabled the typedef will appear as a member of a file,
-# namespace, or class. And the struct will be named TypeS. This can typically
-# be useful for C code in case the coding convention dictates that all compound
-# types are typedef'ed and only the typedef is referenced, never the tag name.
-
-TYPEDEF_HIDES_STRUCT = NO
-
-# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
-# determine which symbols to keep in memory and which to flush to disk.
-# When the cache is full, less often used symbols will be written to disk.
-# For small to medium size projects (<1000 input files) the default value is
-# probably good enough. For larger projects a too small cache size can cause
-# doxygen to be busy swapping symbols to and from disk most of the time
-# causing a significant performance penality.
-# If the system has enough physical memory increasing the cache will improve the
-# performance by keeping more symbols in memory. Note that the value works on
-# a logarithmic scale so increasing the size by one will rougly double the
-# memory usage. The cache size is given by this formula:
-# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
-# corresponding to a cache size of 2^16 = 65536 symbols
-
-SYMBOL_CACHE_SIZE = 0
-
-#---------------------------------------------------------------------------
-# Build related configuration options
-#---------------------------------------------------------------------------
-
-# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
-# documentation are documented, even if no documentation was available.
-# Private class members and static file members will be hidden unless
-# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
-
-EXTRACT_ALL = YES
-
-# If the EXTRACT_PRIVATE tag is set to YES all private members of a class
-# will be included in the documentation.
-
-EXTRACT_PRIVATE = NO
-
-# If the EXTRACT_STATIC tag is set to YES all static members of a file
-# will be included in the documentation.
-
-EXTRACT_STATIC = YES
-
-# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs)
-# defined locally in source files will be included in the documentation.
-# If set to NO only classes defined in header files are included.
-
-EXTRACT_LOCAL_CLASSES = YES
-
-# This flag is only useful for Objective-C code. When set to YES local
-# methods, which are defined in the implementation section but not in
-# the interface are included in the documentation.
-# If set to NO (the default) only methods in the interface are included.
-
-EXTRACT_LOCAL_METHODS = NO
-
-# If this flag is set to YES, the members of anonymous namespaces will be
-# extracted and appear in the documentation as a namespace called
-# 'anonymous_namespace{file}', where file will be replaced with the base
-# name of the file that contains the anonymous namespace. By default
-# anonymous namespace are hidden.
-
-EXTRACT_ANON_NSPACES = NO
-
-# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all
-# undocumented members of documented classes, files or namespaces.
-# If set to NO (the default) these members will be included in the
-# various overviews, but no documentation section is generated.
-# This option has no effect if EXTRACT_ALL is enabled.
-
-HIDE_UNDOC_MEMBERS = NO
-
-# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all
-# undocumented classes that are normally visible in the class hierarchy.
-# If set to NO (the default) these classes will be included in the various
-# overviews. This option has no effect if EXTRACT_ALL is enabled.
-
-HIDE_UNDOC_CLASSES = NO
-
-# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all
-# friend (class|struct|union) declarations.
-# If set to NO (the default) these declarations will be included in the
-# documentation.
-
-HIDE_FRIEND_COMPOUNDS = NO
-
-# If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any
-# documentation blocks found inside the body of a function.
-# If set to NO (the default) these blocks will be appended to the
-# function's detailed documentation block.
-
-HIDE_IN_BODY_DOCS = NO
-
-# The INTERNAL_DOCS tag determines if documentation
-# that is typed after a \internal command is included. If the tag is set
-# to NO (the default) then the documentation will be excluded.
-# Set it to YES to include the internal documentation.
-
-INTERNAL_DOCS = NO
-
-# If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate
-# file names in lower-case letters. If set to YES upper-case letters are also
-# allowed. This is useful if you have classes or files whose names only differ
-# in case and if your file system supports case sensitive file names. Windows
-# and Mac users are advised to set this option to NO.
-
-CASE_SENSE_NAMES = YES
-
-# If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen
-# will show members with their full class and namespace scopes in the
-# documentation. If set to YES the scope will be hidden.
-
-HIDE_SCOPE_NAMES = YES
-
-# If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen
-# will put a list of the files that are included by a file in the documentation
-# of that file.
-
-SHOW_INCLUDE_FILES = NO
-
-# If the FORCE_LOCAL_INCLUDES tag is set to YES then Doxygen
-# will list include files with double quotes in the documentation
-# rather than with sharp brackets.
-
-FORCE_LOCAL_INCLUDES = NO
-
-# If the INLINE_INFO tag is set to YES (the default) then a tag [inline]
-# is inserted in the documentation for inline members.
-
-INLINE_INFO = YES
-
-# If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen
-# will sort the (detailed) documentation of file and class members
-# alphabetically by member name. If set to NO the members will appear in
-# declaration order.
-
-SORT_MEMBER_DOCS = NO
-
-# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the
-# brief documentation of file, namespace and class members alphabetically
-# by member name. If set to NO (the default) the members will appear in
-# declaration order.
-
-SORT_BRIEF_DOCS = NO
-
-# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
-# (brief and detailed) documentation of class members so that constructors and
-# destructors are listed first. If set to NO (the default) the constructors will
-# appear in the respective orders defined by SORT_MEMBER_DOCS and
-# SORT_BRIEF_DOCS. This tag will be ignored for brief docs if SORT_BRIEF_DOCS is
-# set to NO and ignored for detailed docs if SORT_MEMBER_DOCS is set to NO.
-
-SORT_MEMBERS_CTORS_1ST = NO
-
-# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the
-# hierarchy of group names into alphabetical order. If set to NO (the default)
-# the group names will appear in their defined order.
-
-SORT_GROUP_NAMES = NO
-
-# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be
-# sorted by fully-qualified names, including namespaces. If set to
-# NO (the default), the class list will be sorted only by class name,
-# not including the namespace part.
-# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
-# Note: This option applies only to the class list, not to the
-# alphabetical list.
-
-SORT_BY_SCOPE_NAME = NO
-
-# The GENERATE_TODOLIST tag can be used to enable (YES) or
-# disable (NO) the todo list. This list is created by putting \todo
-# commands in the documentation.
-
-GENERATE_TODOLIST = YES
-
-# The GENERATE_TESTLIST tag can be used to enable (YES) or
-# disable (NO) the test list. This list is created by putting \test
-# commands in the documentation.
-
-GENERATE_TESTLIST = YES
-
-# The GENERATE_BUGLIST tag can be used to enable (YES) or
-# disable (NO) the bug list. This list is created by putting \bug
-# commands in the documentation.
-
-GENERATE_BUGLIST = YES
-
-# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or
-# disable (NO) the deprecated list. This list is created by putting
-# \deprecated commands in the documentation.
-
-GENERATE_DEPRECATEDLIST= YES
-
-# The ENABLED_SECTIONS tag can be used to enable conditional
-# documentation sections, marked by \if sectionname ... \endif.
-
-ENABLED_SECTIONS =
-
-# The MAX_INITIALIZER_LINES tag determines the maximum number of lines
-# the initial value of a variable or define consists of for it to appear in
-# the documentation. If the initializer consists of more lines than specified
-# here it will be hidden. Use a value of 0 to hide initializers completely.
-# The appearance of the initializer of individual variables and defines in the
-# documentation can be controlled using \showinitializer or \hideinitializer
-# command in the documentation regardless of this setting.
-
-MAX_INITIALIZER_LINES = 30
-
-# Set the SHOW_USED_FILES tag to NO to disable the list of files generated
-# at the bottom of the documentation of classes and structs. If set to YES the
-# list will mention the files that were used to generate the documentation.
-
-SHOW_USED_FILES = YES
-
-# If the sources in your project are distributed over multiple directories
-# then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy
-# in the documentation. The default is NO.
-
-SHOW_DIRECTORIES = YES
-
-# Set the SHOW_FILES tag to NO to disable the generation of the Files page.
-# This will remove the Files entry from the Quick Index and from the
-# Folder Tree View (if specified). The default is YES.
-
-SHOW_FILES = YES
-
-# Set the SHOW_NAMESPACES tag to NO to disable the generation of the
-# Namespaces page.
-# This will remove the Namespaces entry from the Quick Index
-# and from the Folder Tree View (if specified). The default is YES.
-
-SHOW_NAMESPACES = YES
-
-# The FILE_VERSION_FILTER tag can be used to specify a program or script that
-# doxygen should invoke to get the current version for each file (typically from
-# the version control system). Doxygen will invoke the program by executing (via
-# popen()) the command <command> <input-file>, where <command> is the value of
-# the FILE_VERSION_FILTER tag, and <input-file> is the name of an input file
-# provided by doxygen. Whatever the program writes to standard output
-# is used as the file version. See the manual for examples.
-
-FILE_VERSION_FILTER =
-
-# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
-# by doxygen. The layout file controls the global structure of the generated
-# output files in an output format independent way. The create the layout file
-# that represents doxygen's defaults, run doxygen with the -l option. You can
-# optionally specify a file name after the option, if omitted DoxygenLayout.xml
-# will be used as the name of the layout file.
-
-LAYOUT_FILE =
-
-#---------------------------------------------------------------------------
-# configuration options related to warning and progress messages
-#---------------------------------------------------------------------------
-
-# The QUIET tag can be used to turn on/off the messages that are generated
-# by doxygen. Possible values are YES and NO. If left blank NO is used.
-
-QUIET = NO
-
-# The WARNINGS tag can be used to turn on/off the warning messages that are
-# generated by doxygen. Possible values are YES and NO. If left blank
-# NO is used.
-
-WARNINGS = YES
-
-# If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings
-# for undocumented members. If EXTRACT_ALL is set to YES then this flag will
-# automatically be disabled.
-
-WARN_IF_UNDOCUMENTED = YES
-
-# If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for
-# potential errors in the documentation, such as not documenting some
-# parameters in a documented function, or documenting parameters that
-# don't exist or using markup commands wrongly.
-
-WARN_IF_DOC_ERROR = YES
-
-# This WARN_NO_PARAMDOC option can be abled to get warnings for
-# functions that are documented, but have no documentation for their parameters
-# or return value. If set to NO (the default) doxygen will only warn about
-# wrong or incomplete parameter documentation, but not about the absence of
-# documentation.
-
-WARN_NO_PARAMDOC = NO
-
-# The WARN_FORMAT tag determines the format of the warning messages that
-# doxygen can produce. The string should contain the $file, $line, and $text
-# tags, which will be replaced by the file and line number from which the
-# warning originated and the warning text. Optionally the format may contain
-# $version, which will be replaced by the version of the file (if it could
-# be obtained via FILE_VERSION_FILTER)
-
-WARN_FORMAT = "$file:$line: $text "
-
-# The WARN_LOGFILE tag can be used to specify a file to which warning
-# and error messages should be written. If left blank the output is written
-# to stderr.
-
-WARN_LOGFILE =
-
-#---------------------------------------------------------------------------
-# configuration options related to the input files
-#---------------------------------------------------------------------------
-
-# The INPUT tag can be used to specify the files and/or directories that contain
-# documented source files. You may enter file names like "myfile.cpp" or
-# directories like "/usr/src/myproject". Separate the files or directories
-# with spaces.
-
-INPUT = $(WM_PROJECT_DIR)/src \
- $(WM_PROJECT_DIR)/applications/utilities \
- $(WM_PROJECT_DIR)/applications/solvers
-
-# limit input for testing purposes
-# INPUT = $(WM_PROJECT_DIR)/src/OpenFOAM/global \
-# $(WM_PROJECT_DIR)/src/OpenFOAM/containers \
-# $(WM_PROJECT_DIR)/src/OpenFOAM/primitives \
-# $(WM_PROJECT_DIR)/sampling \
-# $(WM_PROJECT_DIR)/src/finiteVolume/fvMesh
-
-# This tag can be used to specify the character encoding of the source files
-# that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
-# also the default input encoding. Doxygen uses libiconv (or the iconv built
-# into libc) for the transcoding. See http://www.gnu.org/software/libiconv for
-# the list of possible encodings.
-
-INPUT_ENCODING = UTF-8
-
-# If the value of the INPUT tag contains directories, you can use the
-# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
-# and *.h) to filter out the source-files in the directories. If left
-# blank the following patterns are tested:
-# *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx
-# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90
-
-FILE_PATTERNS = *.H \
- *.C
-
-# The RECURSIVE tag can be used to turn specify whether or not subdirectories
-# should be searched for input files as well. Possible values are YES and NO.
-# If left blank NO is used.
-
-RECURSIVE = YES
-
-# The EXCLUDE tag can be used to specify files and/or directories that should
-# excluded from the INPUT source files. This way you can easily exclude a
-# subdirectory from a directory tree whose root is specified with the INPUT tag.
-
-EXCLUDE =
-
-# The EXCLUDE_SYMLINKS tag can be used select whether or not files or
-# directories that are symbolic links (a Unix filesystem feature) are excluded
-# from the input.
-
-EXCLUDE_SYMLINKS = NO
-
-# If the value of the INPUT tag contains directories, you can use the
-# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
-# certain files from those directories. Note that the wildcards are matched
-# against the file with absolute path, so to exclude all test directories
-# for example use the pattern */test/*
-
-EXCLUDE_PATTERNS = */lnInclude/* \
- */t/*
-
-# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
-# (namespaces, classes, functions, etc.) that should be excluded from the
-# output. The symbol name can be a fully qualified name, a word, or if the
-# wildcard * is used, a substring. Examples: ANamespace, AClass,
-# AClass::ANamespace, ANamespace::*Test
-
-EXCLUDE_SYMBOLS =
-
-# The EXAMPLE_PATH tag can be used to specify one or more files or
-# directories that contain example code fragments that are included (see
-# the \include command).
-
-EXAMPLE_PATH =
-
-# If the value of the EXAMPLE_PATH tag contains directories, you can use the
-# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
-# and *.h) to filter out the source-files in the directories. If left
-# blank all files are included.
-
-EXAMPLE_PATTERNS =
-
-# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
-# searched for input files to be used with the \include or \dontinclude
-# commands irrespective of the value of the RECURSIVE tag.
-# Possible values are YES and NO. If left blank NO is used.
-
-EXAMPLE_RECURSIVE = NO
-
-# The IMAGE_PATH tag can be used to specify one or more files or
-# directories that contain image that are included in the documentation (see
-# the \image command).
-
-IMAGE_PATH =
-
-# The INPUT_FILTER tag can be used to specify a program that doxygen should
-# invoke to filter for each input file. Doxygen will invoke the filter program
-# by executing (via popen()) the command <filter> <input-file>, where <filter>
-# is the value of the INPUT_FILTER tag, and <input-file> is the name of an
-# input file. Doxygen will then use the output that the filter program writes
-# to standard output.
-# If FILTER_PATTERNS is specified, this tag will be
-# ignored.
-
-INPUT_FILTER = $(WM_PROJECT_DIR)/bin/tools/doxyFilter
-
-# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
-# basis.
-# Doxygen will compare the file name with each pattern and apply the
-# filter if there is a match.
-# The filters are a list of the form:
-# pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further
-# info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER
-# is applied to all files.
-
-FILTER_PATTERNS =
-
-# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
-# INPUT_FILTER) will be used to filter the input files when producing source
-# files to browse (i.e. when SOURCE_BROWSER is set to YES).
-
-FILTER_SOURCE_FILES = NO
-
-#---------------------------------------------------------------------------
-# configuration options related to source browsing
-#---------------------------------------------------------------------------
-
-# If the SOURCE_BROWSER tag is set to YES then a list of source files will
-# be generated. Documented entities will be cross-referenced with these sources.
-# Note: To get rid of all source code in the generated output, make sure also
-# VERBATIM_HEADERS is set to NO.
-
-SOURCE_BROWSER = YES
-
-# Setting the INLINE_SOURCES tag to YES will include the body
-# of functions and classes directly in the documentation.
-
-INLINE_SOURCES = NO
-
-# Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct
-# doxygen to hide any special comment blocks from generated source code
-# fragments. Normal C and C++ comments will always remain visible.
-
-STRIP_CODE_COMMENTS = YES
-
-# If the REFERENCED_BY_RELATION tag is set to YES
-# then for each documented function all documented
-# functions referencing it will be listed.
-
-REFERENCED_BY_RELATION = YES
-
-# If the REFERENCES_RELATION tag is set to YES
-# then for each documented function all documented entities
-# called/used by that function will be listed.
-
-REFERENCES_RELATION = YES
-
-# If the REFERENCES_LINK_SOURCE tag is set to YES (the default)
-# and SOURCE_BROWSER tag is set to YES, then the hyperlinks from
-# functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will
-# link to the source code.
-# Otherwise they will link to the documentation.
-
-REFERENCES_LINK_SOURCE = YES
-
-# If the USE_HTAGS tag is set to YES then the references to source code
-# will point to the HTML generated by the htags(1) tool instead of doxygen
-# built-in source browser. The htags tool is part of GNU's global source
-# tagging system (see http://www.gnu.org/software/global/global.html). You
-# will need version 4.8.6 or higher.
-
-USE_HTAGS = NO
-
-# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen
-# will generate a verbatim copy of the header file for each class for
-# which an include is specified. Set to NO to disable this.
-
-VERBATIM_HEADERS = YES
-
-#---------------------------------------------------------------------------
-# configuration options related to the alphabetical class index
-#---------------------------------------------------------------------------
-
-# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index
-# of all compounds will be generated. Enable this if the project
-# contains a lot of classes, structs, unions or interfaces.
-
-ALPHABETICAL_INDEX = YES
-
-# If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then
-# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns
-# in which this list will be split (can be a number in the range [1..20])
-
-COLS_IN_ALPHA_INDEX = 1
-
-# In case all classes in a project start with a common prefix, all
-# classes will be put under the same header in the alphabetical index.
-# The IGNORE_PREFIX tag can be used to specify one or more prefixes that
-# should be ignored while generating the index headers.
-
-IGNORE_PREFIX =
-
-#---------------------------------------------------------------------------
-# configuration options related to the HTML output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_HTML tag is set to YES (the default) Doxygen will
-# generate HTML output.
-
-GENERATE_HTML = YES
-
-# If the HTML_FOOTER_DESCRIPTION tag is set to YES, Doxygen will
-# add generated date, project name and doxygen version to HTML footer.
-
-HTML_FOOTER_DESCRIPTION= NO
-
-# The HTML_OUTPUT tag is used to specify where the HTML docs will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `html' will be used as the default path.
-
-HTML_OUTPUT = html
-
-# The HTML_FILE_EXTENSION tag can be used to specify the file extension for
-# each generated HTML page (for example: .htm,.php,.asp). If it is left blank
-# doxygen will generate files with .html extension.
-
-HTML_FILE_EXTENSION = .html
-
-# The HTML_HEADER tag can be used to specify a personal HTML header for
-# each generated HTML page. If it is left blank doxygen will generate a
-# standard header.
-
-HTML_HEADER = $(WM_PROJECT_DIR)/doc/doxygen/_Header
-
-# The HTML_FOOTER tag can be used to specify a personal HTML footer for
-# each generated HTML page. If it is left blank doxygen will generate a
-# standard footer.
-
-HTML_FOOTER = $(WM_PROJECT_DIR)/doc/doxygen/_Footer
-
-# The HTML_STYLESHEET tag can be used to specify a user-defined cascading
-# style sheet that is used by each HTML page. It can be used to
-# fine-tune the look of the HTML output. If the tag is left blank doxygen
-# will generate a default style sheet. Note that doxygen will try to copy
-# the style sheet file to the HTML output directory, so don't put your own
-# stylesheet in the HTML output directory as well, or it will be erased!
-
-HTML_STYLESHEET =
-
-# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML
-# page will contain the date and time when the page was generated. Setting
-# this to NO can help when comparing the output of multiple runs.
-
-HTML_TIMESTAMP = NO
-
-# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
-# files or namespaces will be aligned in HTML using tables. If set to
-# NO a bullet list will be used.
-
-HTML_ALIGN_MEMBERS = YES
-
-# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
-# documentation will contain sections that can be hidden and shown after the
-# page has loaded. For this to work a browser that supports
-# JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox
-# Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari).
-
-HTML_DYNAMIC_SECTIONS = NO
-
-# If the GENERATE_DOCSET tag is set to YES, additional index files will be
-# generated that can be used as input for Apple's Xcode 3 integrated development
-# environment, introduced with OSX 10.5 (Leopard). To create a documentation
-# set, doxygen will generate a Makefile in the HTML output directory. Running
-# make will produce the docset in that directory and running "make install" will
-# install the docset in ~/Library/Developer/Shared/Documentation/DocSets so that
-# Xcode will find it at startup. See
-# http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more
-# information.
-
-GENERATE_DOCSET = NO
-
-# When GENERATE_DOCSET tag is set to YES, this tag determines the name of the
-# feed. A documentation feed provides an umbrella under which multiple
-# documentation sets from a single provider (such as a company or product suite)
-# can be grouped.
-
-DOCSET_FEEDNAME = "Doxygen generated docs"
-
-# When GENERATE_DOCSET tag is set to YES, this tag specifies a string that
-# should uniquely identify the documentation set bundle. This should be a
-# reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen
-# will append .docset to the name.
-
-DOCSET_BUNDLE_ID = org.doxygen.Project
-
-# If the GENERATE_HTMLHELP tag is set to YES, additional index files
-# will be generated that can be used as input for tools like the
-# Microsoft HTML help workshop to generate a compiled HTML help file (.chm)
-# of the generated HTML documentation.
-
-GENERATE_HTMLHELP = NO
-
-# If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can
-# be used to specify the file name of the resulting .chm file. You
-# can add a path in front of the file if the result should not be
-# written to the html output directory.
-
-CHM_FILE =
-
-# If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can
-# be used to specify the location (absolute path including file name) of
-# the HTML help compiler (hhc.exe). If non-empty doxygen will try to run
-# the HTML help compiler on the generated index.hhp.
-
-HHC_LOCATION =
-
-# If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag
-# controls if a separate .chi index file is generated (YES) or that
-# it should be included in the master .chm file (NO).
-
-GENERATE_CHI = NO
-
-# If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING
-# is used to encode HtmlHelp index (hhk), content (hhc) and project file
-# content.
-
-CHM_INDEX_ENCODING =
-
-# If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag
-# controls whether a binary table of contents is generated (YES) or a
-# normal table of contents (NO) in the .chm file.
-
-BINARY_TOC = NO
-
-# The TOC_EXPAND flag can be set to YES to add extra items for group members
-# to the contents of the HTML help documentation and to the tree view.
-
-TOC_EXPAND = NO
-
-# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
-# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that
-# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help
-# (.qch) of the generated HTML documentation.
-
-GENERATE_QHP = NO
-
-# If the QHG_LOCATION tag is specified, the QCH_FILE tag can
-# be used to specify the file name of the resulting .qch file.
-# The path specified is relative to the HTML output folder.
-
-QCH_FILE =
-
-# The QHP_NAMESPACE tag specifies the namespace to use when generating
-# Qt Help Project output. For more information please see
-# http://doc.trolltech.com/qthelpproject.html#namespace
-
-QHP_NAMESPACE = org.doxygen.Project
-
-# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating
-# Qt Help Project output. For more information please see
-# http://doc.trolltech.com/qthelpproject.html#virtual-folders
-
-QHP_VIRTUAL_FOLDER = doc
-
-# If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to
-# add. For more information please see
-# http://doc.trolltech.com/qthelpproject.html#custom-filters
-
-QHP_CUST_FILTER_NAME =
-
-# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom
-# filter to add.For more information please see <a
-# href="http://doc.trolltech.com/qthelpproject.html#custom-filters">Qt Help
-# Project / Custom Filters</a>.
-
-QHP_CUST_FILTER_ATTRS =
-
-# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
-# project's filter section matches. <a
-# href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">Qt Help
-# Project / Filter Attributes</a>.
-
-QHP_SECT_FILTER_ATTRS =
-
-# If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can
-# be used to specify the location of Qt's qhelpgenerator.
-# If non-empty doxygen will try to run qhelpgenerator on the generated
-# .qhp file.
-
-QHG_LOCATION =
-
-# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be
-# generated, which together with the HTML files, form an Eclipse help
-# plugin. To install this plugin and make it available under the help contents
-# menu in Eclipse, the contents of the directory containing the HTML and XML
-# files needs to be copied into the plugins directory of eclipse. The name of
-# the directory within the plugins directory should be the same as the
-# ECLIPSE_DOC_ID value. After copying Eclipse needs to be restarted before the
-# help appears.
-
-GENERATE_ECLIPSEHELP = NO
-
-# A unique identifier for the eclipse help plugin. When installing the plugin
-# the directory name containing the HTML and XML files should also have
-# this name.
-
-ECLIPSE_DOC_ID = org.doxygen.Project
-
-# The DISABLE_INDEX tag can be used to turn on/off the condensed index at
-# top of each HTML page. The value NO (the default) enables the index and
-# the value YES disables it.
-
-DISABLE_INDEX = NO
-
-# This tag can be used to set the number of enum values (range [1..20])
-# that doxygen will group on one line in the generated HTML documentation.
-
-ENUM_VALUES_PER_LINE = 4
-
-# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
-# structure should be generated to display hierarchical information.
-# If the tag value is set to YES, a side panel will be generated
-# containing a tree-like index structure (just like the one that
-# is generated for HTML Help). For this to work a browser that supports
-# JavaScript, DHTML, CSS and frames is required (i.e. any modern browser).
-# Windows users are probably better off using the HTML help feature.
-
-GENERATE_TREEVIEW = NO
-
-# By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories,
-# and Class Hierarchy pages using a tree view instead of an ordered list.
-
-USE_INLINE_TREES = NO
-
-# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be
-# used to set the initial width (in pixels) of the frame in which the tree
-# is shown.
-
-TREEVIEW_WIDTH = 250
-
-# Use this tag to change the font size of Latex formulas included
-# as images in the HTML documentation. The default is 10. Note that
-# when you change the font size after a successful doxygen run you need
-# to manually remove any form_*.png images from the HTML output directory
-# to force them to be regenerated.
-
-FORMULA_FONTSIZE = 10
-
-# When the SEARCHENGINE tag is enabled doxygen will generate a search box for
-# the HTML output. The underlying search engine uses javascript and DHTML and
-# should work on any modern browser. Note that when using HTML help
-# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET)
-# there is already a search function so this one should typically be
-# disabled. For large projects the javascript based search engine can be slow,
-# then enabling SERVER_BASED_SEARCH may provide a better solution.
-
-SEARCHENGINE = YES
-
-# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
-# implemented using a PHP enabled web server instead of at the web client using
-# Javascript. Doxygen will generate the search PHP script and index file to put
-# on the web server. The advantage of the server based approach is that it
-# scales better to large projects and allows full text search. The disadvances
-# is that it is more difficult to setup and does not have live searching
-# capabilities.
-
-SERVER_BASED_SEARCH = NO
-# old default
-# SERVER_BASED_SEARCH = YES
-
-#---------------------------------------------------------------------------
-# configuration options related to the LaTeX output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
-# generate Latex output.
-
-GENERATE_LATEX = NO
-
-# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `latex' will be used as the default path.
-
-LATEX_OUTPUT = latex
-
-# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
-# invoked. If left blank `latex' will be used as the default command name.
-# Note that when enabling USE_PDFLATEX this option is only used for
-# generating bitmaps for formulas in the HTML output, but not in the
-# Makefile that is written to the output directory.
-
-LATEX_CMD_NAME = latex
-
-# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to
-# generate index for LaTeX. If left blank `makeindex' will be used as the
-# default command name.
-
-MAKEINDEX_CMD_NAME = makeindex
-
-# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact
-# LaTeX documents. This may be useful for small projects and may help to
-# save some trees in general.
-
-COMPACT_LATEX = NO
-
-# The PAPER_TYPE tag can be used to set the paper type that is used
-# by the printer. Possible values are: a4, a4wide, letter, legal and
-# executive. If left blank a4wide will be used.
-
-PAPER_TYPE = a4wide
-
-# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX
-# packages that should be included in the LaTeX output.
-
-EXTRA_PACKAGES = $(WM_PROJECT_DIR)/doc/Doxygen/Macros/tensorOperator
-
-# The LATEX_HEADER tag can be used to specify a personal LaTeX header for
-# the generated latex document. The header should contain everything until
-# the first chapter. If it is left blank doxygen will generate a
-# standard header. Notice: only use this tag if you know what you are doing!
-
-LATEX_HEADER =
-
-# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
-# is prepared for conversion to pdf (using ps2pdf). The pdf file will
-# contain links (just like the HTML output) instead of page references
-# This makes the output suitable for online browsing using a pdf viewer.
-
-PDF_HYPERLINKS = YES
-
-# If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of
-# plain latex in the generated Makefile. Set this option to YES to get a
-# higher quality PDF documentation.
-
-USE_PDFLATEX = YES
-
-# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode.
-# command to the generated LaTeX files. This will instruct LaTeX to keep
-# running if errors occur, instead of asking the user for help.
-# This option is also used when generating formulas in HTML.
-
-LATEX_BATCHMODE = NO
-
-# If LATEX_HIDE_INDICES is set to YES then doxygen will not
-# include the index chapters (such as File Index, Compound Index, etc.)
-# in the output.
-
-LATEX_HIDE_INDICES = NO
-
-# If LATEX_SOURCE_CODE is set to YES then doxygen will include source code with
-# syntax highlighting in the LaTeX output. Note that which sources are shown
-# also depends on other settings such as SOURCE_BROWSER.
-
-LATEX_SOURCE_CODE = NO
-
-#---------------------------------------------------------------------------
-# configuration options related to the RTF output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output
-# The RTF output is optimized for Word 97 and may not look very pretty with
-# other RTF readers or editors.
-
-GENERATE_RTF = NO
-
-# The RTF_OUTPUT tag is used to specify where the RTF docs will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `rtf' will be used as the default path.
-
-RTF_OUTPUT = rtf
-
-# If the COMPACT_RTF tag is set to YES Doxygen generates more compact
-# RTF documents. This may be useful for small projects and may help to
-# save some trees in general.
-
-COMPACT_RTF = NO
-
-# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated
-# will contain hyperlink fields. The RTF file will
-# contain links (just like the HTML output) instead of page references.
-# This makes the output suitable for online browsing using WORD or other
-# programs which support those fields.
-# Note: wordpad (write) and others do not support links.
-
-RTF_HYPERLINKS = NO
-
-# Load stylesheet definitions from file. Syntax is similar to doxygen's
-# config file, i.e. a series of assignments. You only have to provide
-# replacements, missing definitions are set to their default value.
-
-RTF_STYLESHEET_FILE =
-
-# Set optional variables used in the generation of an rtf document.
-# Syntax is similar to doxygen's config file.
-
-RTF_EXTENSIONS_FILE =
-
-#---------------------------------------------------------------------------
-# configuration options related to the man page output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_MAN tag is set to YES (the default) Doxygen will
-# generate man pages
-
-GENERATE_MAN = NO
-
-# The MAN_OUTPUT tag is used to specify where the man pages will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `man' will be used as the default path.
-
-MAN_OUTPUT = man
-
-# The MAN_EXTENSION tag determines the extension that is added to
-# the generated man pages (default is the subroutine's section .3)
-
-MAN_EXTENSION = .3
-
-# If the MAN_LINKS tag is set to YES and Doxygen generates man output,
-# then it will generate one additional man file for each entity
-# documented in the real man page(s). These additional files
-# only source the real man page, but without them the man command
-# would be unable to find the correct page. The default is NO.
-
-MAN_LINKS = NO
-
-#---------------------------------------------------------------------------
-# configuration options related to the XML output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_XML tag is set to YES Doxygen will
-# generate an XML file that captures the structure of
-# the code including all documentation.
-
-GENERATE_XML = NO
-
-# The XML_OUTPUT tag is used to specify where the XML pages will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `xml' will be used as the default path.
-
-XML_OUTPUT = xml
-
-# The XML_SCHEMA tag can be used to specify an XML schema,
-# which can be used by a validating XML parser to check the
-# syntax of the XML files.
-
-XML_SCHEMA =
-
-# The XML_DTD tag can be used to specify an XML DTD,
-# which can be used by a validating XML parser to check the
-# syntax of the XML files.
-
-XML_DTD =
-
-# If the XML_PROGRAMLISTING tag is set to YES Doxygen will
-# dump the program listings (including syntax highlighting
-# and cross-referencing information) to the XML output. Note that
-# enabling this will significantly increase the size of the XML output.
-
-XML_PROGRAMLISTING = YES
-
-#---------------------------------------------------------------------------
-# configuration options for the AutoGen Definitions output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will
-# generate an AutoGen Definitions (see autogen.sf.net) file
-# that captures the structure of the code including all
-# documentation. Note that this feature is still experimental
-# and incomplete at the moment.
-
-GENERATE_AUTOGEN_DEF = NO
-
-#---------------------------------------------------------------------------
-# configuration options related to the Perl module output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_PERLMOD tag is set to YES Doxygen will
-# generate a Perl module file that captures the structure of
-# the code including all documentation. Note that this
-# feature is still experimental and incomplete at the
-# moment.
-
-GENERATE_PERLMOD = NO
-
-# If the PERLMOD_LATEX tag is set to YES Doxygen will generate
-# the necessary Makefile rules, Perl scripts and LaTeX code to be able
-# to generate PDF and DVI output from the Perl module output.
-
-PERLMOD_LATEX = NO
-
-# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be
-# nicely formatted so it can be parsed by a human reader.
-# This is useful
-# if you want to understand what is going on.
-# On the other hand, if this
-# tag is set to NO the size of the Perl module output will be much smaller
-# and Perl will parse it just the same.
-
-PERLMOD_PRETTY = YES
-
-# The names of the make variables in the generated doxyrules.make file
-# are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX.
-# This is useful so different doxyrules.make files included by the same
-# Makefile don't overwrite each other's variables.
-
-PERLMOD_MAKEVAR_PREFIX =
-
-#---------------------------------------------------------------------------
-# Configuration options related to the preprocessor
-#---------------------------------------------------------------------------
-
-# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will
-# evaluate all C-preprocessor directives found in the sources and include
-# files.
-
-ENABLE_PREPROCESSING = YES
-
-# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro
-# names in the source code. If set to NO (the default) only conditional
-# compilation will be performed. Macro expansion can be done in a controlled
-# way by setting EXPAND_ONLY_PREDEF to YES.
-
-MACRO_EXPANSION = YES
-
-# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES
-# then the macro expansion is limited to the macros specified with the
-# PREDEFINED and EXPAND_AS_DEFINED tags.
-
-EXPAND_ONLY_PREDEF = NO
-
-# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files
-# in the INCLUDE_PATH (see below) will be search if a #include is found.
-
-SEARCH_INCLUDES = NO
-
-# The INCLUDE_PATH tag can be used to specify one or more directories that
-# contain include files that are not input files but should be processed by
-# the preprocessor.
-
-INCLUDE_PATH =
-
-# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
-# patterns (like *.h and *.hpp) to filter out the header-files in the
-# directories. If left blank, the patterns specified with FILE_PATTERNS will
-# be used.
-
-INCLUDE_FILE_PATTERNS =
-
-# The PREDEFINED tag can be used to specify one or more macro names that
-# are defined before the preprocessor is started (similar to the -D option of
-# gcc). The argument of the tag is a list of macros of the form: name
-# or name=definition (no spaces). If the definition and the = are
-# omitted =1 is assumed. To prevent a macro definition from being
-# undefined via #undef or recursively expanded use the := operator
-# instead of the = operator.
-
-PREDEFINED =
-
-# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then
-# this tag can be used to specify a list of macro names that should be expanded.
-# The macro definition that is found in the sources will be used.
-# Use the PREDEFINED tag if you want to use a different macro definition.
-
-EXPAND_AS_DEFINED =
-
-# If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then
-# doxygen's preprocessor will remove all function-like macros that are alone
-# on a line, have an all uppercase name, and do not end with a semicolon. Such
-# function macros are typically used for boiler-plate code, and will confuse
-# the parser if not removed.
-
-SKIP_FUNCTION_MACROS = YES
-
-#---------------------------------------------------------------------------
-# Configuration::additions related to external references
-#---------------------------------------------------------------------------
-
-# The TAGFILES option can be used to specify one or more tagfiles.
-# Optionally an initial location of the external documentation
-# can be added for each tagfile. The format of a tag file without
-# this location is as follows:
-#
-# TAGFILES = file1 file2 ...
-# Adding location for the tag files is done as follows:
-#
-# TAGFILES = file1=loc1 "file2 = loc2" ...
-# where "loc1" and "loc2" can be relative or absolute paths or
-# URLs. If a location is present for each tag, the installdox tool
-# does not have to be run to correct the links.
-# Note that each tag file must have a unique name
-# (where the name does NOT include the path)
-# If a tag file is not located in the directory in which doxygen
-# is run, you must also specify the path to the tagfile here.
-
-TAGFILES =
-
-# When a file name is specified after GENERATE_TAGFILE, doxygen will create
-# a tag file that is based on the input files it reads.
-
-GENERATE_TAGFILE = DTAGS
-
-# If the ALLEXTERNALS tag is set to YES all external classes will be listed
-# in the class index. If set to NO only the inherited external classes
-# will be listed.
-
-ALLEXTERNALS = YES
-
-# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed
-# in the modules index. If set to NO, only the current project's groups will
-# be listed.
-
-EXTERNAL_GROUPS = YES
-
-# The PERL_PATH should be the absolute path and name of the perl script
-# interpreter (i.e. the result of `which perl').
-
-PERL_PATH = /usr/bin/perl
-
-#---------------------------------------------------------------------------
-# Configuration options related to the dot tool
-#---------------------------------------------------------------------------
-
-# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will
-# generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base
-# or super classes. Setting the tag to NO turns the diagrams off. Note that
-# this option is superseded by the HAVE_DOT option below. This is only a
-# fallback. It is recommended to install and use dot, since it yields more
-# powerful graphs.
-
-CLASS_DIAGRAMS = YES
-
-# You can define message sequence charts within doxygen comments using the \msc
-# command. Doxygen will then run the mscgen tool (see
-# http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the
-# documentation. The MSCGEN_PATH tag allows you to specify the directory where
-# the mscgen tool resides. If left empty the tool is assumed to be found in the
-# default search path.
-
-MSCGEN_PATH =
-
-# If set to YES, the inheritance and collaboration graphs will hide
-# inheritance and usage relations if the target is undocumented
-# or is not a class.
-
-HIDE_UNDOC_RELATIONS = YES
-
-# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
-# available from the path. This tool is part of Graphviz, a graph visualization
-# toolkit from AT&T and Lucent Bell Labs. The other options in this section
-# have no effect if this option is set to NO (the default)
-
-HAVE_DOT = YES
-
-# By default doxygen will write a font called FreeSans.ttf to the output
-# directory and reference it in all dot files that doxygen generates. This font
-# does not include all possible unicode characters however, so when you need
-# these (or just want a differently looking font) you can specify the font name
-# using DOT_FONTNAME. You need need to make sure dot is able to find the font,
-# which can be done by putting it in a standard location or by setting the
-# DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory
-# containing the font.
-
-DOT_FONTNAME = FreeSans
-
-# The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
-# The default size is 10pt.
-
-DOT_FONTSIZE = 10
-
-# By default doxygen will tell dot to use the output directory to look for the
-# FreeSans.ttf font (which doxygen will put there itself). If you specify a
-# different font using DOT_FONTNAME you can set the path where dot
-# can find it using this tag.
-
-DOT_FONTPATH =
-
-# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen
-# will generate a graph for each documented class showing the direct and
-# indirect inheritance relations. Setting this tag to YES will force the
-# the CLASS_DIAGRAMS tag to NO.
-
-CLASS_GRAPH = YES
-
-# If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen
-# will generate a graph for each documented class showing the direct and
-# indirect implementation dependencies (inheritance, containment, and
-# class references variables) of the class with other documented classes.
-
-COLLABORATION_GRAPH = YES
-
-# If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen
-# will generate a graph for groups, showing the direct groups dependencies
-
-GROUP_GRAPHS = YES
-
-# If the UML_LOOK tag is set to YES doxygen will generate inheritance and
-# collaboration diagrams in a style similar to the OMG's Unified Modeling
-# Language.
-
-UML_LOOK = NO
-
-# If set to YES, the inheritance and collaboration graphs will show the
-# relations between templates and their instances.
-
-TEMPLATE_RELATIONS = YES
-
-# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT
-# tags are set to YES then doxygen will generate a graph for each documented
-# file showing the direct and indirect include dependencies of the file with
-# other documented files.
-
-INCLUDE_GRAPH = YES
-
-# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and
-# HAVE_DOT tags are set to YES then doxygen will generate a graph for each
-# documented header file showing the documented files that directly or
-# indirectly include this file.
-
-INCLUDED_BY_GRAPH = YES
-
-# If the CALL_GRAPH and HAVE_DOT options are set to YES then
-# doxygen will generate a call dependency graph for every global function
-# or class method. Note that enabling this option will significantly increase
-# the time of a run. So in most cases it will be better to enable call graphs
-# for selected functions only using the \callgraph command.
-
-CALL_GRAPH = YES
-
-# If the CALLER_GRAPH and HAVE_DOT tags are set to YES then
-# doxygen will generate a caller dependency graph for every global function
-# or class method. Note that enabling this option will significantly increase
-# the time of a run. So in most cases it will be better to enable caller
-# graphs for selected functions only using the \callergraph command.
-
-CALLER_GRAPH = YES
-
-# If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen
-# will graphical hierarchy of all classes instead of a textual one.
-
-GRAPHICAL_HIERARCHY = YES
-
-# If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES
-# then doxygen will show the dependencies a directory has on other directories
-# in a graphical way. The dependency relations are determined by the #include
-# relations between the files in the directories.
-
-DIRECTORY_GRAPH = YES
-
-# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
-# generated by dot. Possible values are png, jpg, or gif
-# If left blank png will be used.
-
-DOT_IMAGE_FORMAT = png
-
-# The tag DOT_PATH can be used to specify the path where the dot tool can be
-# found. If left blank, it is assumed the dot tool can be found in the path.
-
-DOT_PATH =
-
-# The DOTFILE_DIRS tag can be used to specify one or more directories that
-# contain dot files that are included in the documentation (see the
-# \dotfile command).
-
-DOTFILE_DIRS =
-
-# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
-# nodes that will be shown in the graph. If the number of nodes in a graph
-# becomes larger than this value, doxygen will truncate the graph, which is
-# visualized by representing a node as a red box. Note that doxygen if the
-# number of direct children of the root node in a graph is already larger than
-# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note
-# that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
-
-DOT_GRAPH_MAX_NODES = 50
-
-# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the
-# graphs generated by dot. A depth value of 3 means that only nodes reachable
-# from the root by following a path via at most 3 edges will be shown. Nodes
-# that lay further from the root node will be omitted. Note that setting this
-# option to 1 or 2 may greatly reduce the computation time needed for large
-# code bases. Also note that the size of a graph can be further restricted by
-# DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
-
-MAX_DOT_GRAPH_DEPTH = 3
-
-# Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
-# background. This is disabled by default, because dot on Windows does not
-# seem to support this out of the box. Warning: Depending on the platform used,
-# enabling this option may lead to badly anti-aliased labels on the edges of
-# a graph (i.e. they become hard to read).
-
-DOT_TRANSPARENT = YES
-
-# Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output
-# files in one run (i.e. multiple -o and -T options on the command line). This
-# makes dot run faster, but since only newer versions of dot (>1.8.10)
-# support this, this feature is disabled by default.
-
-DOT_MULTI_TARGETS = YES
-
-# If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will
-# generate a legend page explaining the meaning of the various boxes and
-# arrows in the dot generated graphs.
-
-GENERATE_LEGEND = YES
-
-# If the DOT_CLEANUP tag is set to YES (the default) Doxygen will
-# remove the intermediate dot files that are used to generate
-# the various graphs.
-
-DOT_CLEANUP = YES
diff --git a/doc/doxygen/OpenFOAMicon.png b/doc/doxygen/OpenFOAMicon.png
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--
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