diff --git a/applications/test/vectorTools/Make/files b/applications/test/vectorTools/Make/files
deleted file mode 100644
index 0b30b98f8f3b0c0c1048846c8e90a62733a12dda..0000000000000000000000000000000000000000
--- a/applications/test/vectorTools/Make/files
+++ /dev/null
@@ -1,3 +0,0 @@
-Test-vectorTools.C
-
-EXE = $(FOAM_USER_APPBIN)/Test-vectorTools
diff --git a/applications/test/vectorTools/Make/options b/applications/test/vectorTools/Make/options
deleted file mode 100644
index 9e015e6078873ee32ae6d53ac1590010819dcb69..0000000000000000000000000000000000000000
--- a/applications/test/vectorTools/Make/options
+++ /dev/null
@@ -1 +0,0 @@
-EXE_INC = -I$(FOAM_APP)/utilities/mesh/generation/cvMesh/vectorTools
diff --git a/applications/test/vectorTools/Test-vectorTools.C b/applications/test/vectorTools/Test-vectorTools.C
deleted file mode 100644
index 85d18ed98957073b2ab7130534cc21f0828740cf..0000000000000000000000000000000000000000
--- a/applications/test/vectorTools/Test-vectorTools.C
+++ /dev/null
@@ -1,71 +0,0 @@
-#include "vector.H"
-#include "IOstreams.H"
-#include "vectorTools.H"
-#include "unitConversion.H"
-
-using namespace Foam;
-
-
-void test(const vector& a, const vector& b, const scalar tolerance)
-{
- Info<< "Vectors " << a << " and " << b
- << " are (to tolerance of " << tolerance << "): ";
-
- if (vectorTools::areParallel(a, b, tolerance))
- Info<< " parallel ";
-
- if (vectorTools::areOrthogonal(a, b, tolerance))
- Info<< " orthogonal ";
-
- if (vectorTools::areAcute(a, b))
- Info<< " acute ";
-
- if (vectorTools::areObtuse(a, b))
- Info<< " obtuse ";
-
- Info<< ", angle = " << vectorTools::degAngleBetween(a, b);
-
- Info<< endl;
-}
-
-
-int main()
-{
- vector a(1.0, 1.0, 1.0);
- vector b(2.0, 2.0, 2.0);
-
- test(a, b, 0.0);
- test(a, b, VSMALL);
- test(a, b, SMALL);
- test(a, b, 1e-3);
- test(a, b, 1e-1);
-
- a = vector(1,0,0);
- b = vector(0,2,0);
-
- test(a, b, 0.0);
- test(a, b, VSMALL);
- test(a, b, SMALL);
- test(a, b, 1e-3);
- test(a, b, 1e-1);
-
- a = vector(1,0,0);
- b = vector(-1,0,0);
-
- test(a, b, 0.0);
- test(a, b, VSMALL);
- test(a, b, SMALL);
- test(a, b, 1e-3);
- test(a, b, 1e-1);
-
- a = vector(1,0,0);
- b = vector(-1,2,0);
-
- test(a, b, 0.0);
- test(a, b, VSMALL);
- test(a, b, SMALL);
- test(a, b, 1e-3);
- test(a, b, 1e-1);
-
- return 0;
-}
diff --git a/applications/utilities/mesh/advanced/collapseEdges/collapseDict b/applications/utilities/mesh/advanced/collapseEdges/collapseDict
index 78905475e33add919a8cc0ece968b737c26fea15..60f4cb2f43809aff6b09b4ab0057aec3b226ab9b 100644
--- a/applications/utilities/mesh/advanced/collapseEdges/collapseDict
+++ b/applications/utilities/mesh/advanced/collapseEdges/collapseDict
@@ -2,24 +2,16 @@
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: dev |
-| \\ / A nd | Web: http://www.openfoam.org |
+| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
-
FoamFile
{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object collapseDict;
+ version 2.0;
+ format ascii;
+ class dictionary;
+ object collapseDict;
}
-
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
collapseEdgesCoeffs
@@ -78,7 +70,11 @@ meshQualityCoeffs
meshQualityCoeffDict meshQualityDict;
// Maximum number of outer iterations is mesh quality checking is enabled
- maximumIterations 30;
+ maximumIterations 10;
+
+ // Maximum number of iterations deletion of a point can cause a bad face
+ // to be constructed before it is forced to not be deleted
+ maxPointErrorCount 5;
}
diff --git a/applications/utilities/mesh/generation/Allwmake b/applications/utilities/mesh/generation/Allwmake
index 48ca530c96933f6c31bf4f126658efc9f607fd51..d557fa34f89e754385551f8d8bba0ef418d049e5 100755
--- a/applications/utilities/mesh/generation/Allwmake
+++ b/applications/utilities/mesh/generation/Allwmake
@@ -9,10 +9,5 @@ extrude2DMesh/Allwmake
wmake snappyHexMesh
-if [ -d "$CGAL_ARCH_PATH" ]
-then
- cvMesh/Allwmake
- cv2DMesh/Allwmake
-fi
# ----------------------------------------------------------------- end-of-file
diff --git a/applications/utilities/mesh/generation/cv2DMesh/Allwclean b/applications/utilities/mesh/generation/cv2DMesh/Allwclean
deleted file mode 100755
index d0ae53e41503d0ccd189b47c40f83dc193030e03..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/Allwclean
+++ /dev/null
@@ -1,8 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-set -x
-
-wclean libso conformalVoronoi2DMesh
-wclean
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/applications/utilities/mesh/generation/cv2DMesh/Allwmake b/applications/utilities/mesh/generation/cv2DMesh/Allwmake
deleted file mode 100755
index 54868499573cf6b3ce989a211b0fd1be7944c490..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/Allwmake
+++ /dev/null
@@ -1,8 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-set -x
-
-wmake libso conformalVoronoi2DMesh
-wmake
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/applications/utilities/mesh/generation/cv2DMesh/CGALTriangulation2DKernel.H b/applications/utilities/mesh/generation/cv2DMesh/CGALTriangulation2DKernel.H
deleted file mode 100644
index 28002f962fd3935e9de325d4bba28da3746fdd96..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/CGALTriangulation2DKernel.H
+++ /dev/null
@@ -1,60 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Typedefs
- CGALTriangulation2DKernel
-
-Description
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef CGALTriangulation2DKernel_H
-#define CGALTriangulation2DKernel_H
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "CGAL/Delaunay_triangulation_2.h"
-
-#ifdef CGAL_INEXACT
-
- // Fast kernel using a double as the storage type but the triangulation
- // may fail
- #include "CGAL/Exact_predicates_inexact_constructions_kernel.h"
-
- typedef CGAL::Exact_predicates_inexact_constructions_kernel K;
-
-#else
-
- // Very robust but expensive kernel
- #include "CGAL/Exact_predicates_exact_constructions_kernel.h"
-
- typedef CGAL::Exact_predicates_exact_constructions_kernel K;
-
-#endif
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/CGALTriangulation2Ddefs.H b/applications/utilities/mesh/generation/cv2DMesh/CGALTriangulation2Ddefs.H
deleted file mode 100644
index 87319265483b63d1468fecf57a1be3edfde2fec0..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/CGALTriangulation2Ddefs.H
+++ /dev/null
@@ -1,76 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Typedefs
- CGALTriangulation2Ddefs
-
-Description
- CGAL data structures used for 2D Delaunay meshing.
-
- Define CGAL_INEXACT to use Exact_predicates_inexact_constructions kernel
- otherwise the more robust but much less efficient
- Exact_predicates_exact_constructions will be used.
-
- Define CGAL_HIERARCHY to use hierarchical Delaunay triangulation which is
- faster but uses more memory than the standard Delaunay triangulation.
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef CGALTriangulation2Ddefs_H
-#define CGALTriangulation2Ddefs_H
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "CGALTriangulation2DKernel.H"
-
-#include "indexedVertex.H"
-#include "indexedFace.H"
-
-typedef CGAL::indexedVertex<K> Vb;
-typedef CGAL::indexedFace<K> Fb;
-
-#ifdef CGAL_HIERARCHY
-
- // Data structures for hierarchical Delaunay triangulation which is more
- // efficient but also uses more storage
- #include "CGAL/Triangulation_hierarchy_2.h"
-
- typedef CGAL::Triangulation_hierarchy_vertex_base_2<Vb> Vbh;
- typedef CGAL::Triangulation_data_structure_2<Vbh, Fb> Tds;
- typedef CGAL::Delaunay_triangulation_2<K, Tds> DT;
- typedef CGAL::Triangulation_hierarchy_2<DT> Delaunay;
-
-#else
-
- // Data structures for standard Delaunay triangulation
- typedef CGAL::Triangulation_data_structure_2<Vb, Fb> Tds;
- typedef CGAL::Delaunay_triangulation_2<K, Tds> Delaunay;
-
-#endif
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/CV2D.C b/applications/utilities/mesh/generation/cv2DMesh/CV2D.C
deleted file mode 100644
index 8a5931df61229dfb523c3a584377d0652ae15e73..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/CV2D.C
+++ /dev/null
@@ -1,997 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*----------------------------------------------------------------------------*/
-
-#include "CV2D.H"
-#include "Random.H"
-#include "transform.H"
-#include "IFstream.H"
-#include "uint.H"
-#include "ulong.H"
-
-namespace Foam
-{
- defineTypeNameAndDebug(CV2D, 0);
-}
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-void Foam::CV2D::insertBoundingBox()
-{
- Info<< "insertBoundingBox: creating bounding mesh" << endl;
- scalar bigSpan = 10*meshControls().span();
- insertPoint(point2D(-bigSpan, -bigSpan), Vb::FAR_POINT);
- insertPoint(point2D(-bigSpan, bigSpan), Vb::FAR_POINT);
- insertPoint(point2D(bigSpan, -bigSpan), Vb::FAR_POINT);
- insertPoint(point2D(bigSpan, bigSpan), Vb::FAR_POINT);
-}
-
-
-void Foam::CV2D::fast_restore_Delaunay(Vertex_handle vh)
-{
- int i;
- Face_handle f = vh->face(), next, start(f);
-
- do
- {
- i=f->index(vh);
- if (!is_infinite(f))
- {
- if (!internal_flip(f, cw(i))) external_flip(f, i);
- if (f->neighbor(i) == start) start = f;
- }
- f = f->neighbor(cw(i));
- } while (f != start);
-}
-
-
-void Foam::CV2D::external_flip(Face_handle& f, int i)
-{
- Face_handle n = f->neighbor(i);
-
- if
- (
- CGAL::ON_POSITIVE_SIDE
- != side_of_oriented_circle(n, f->vertex(i)->point())
- ) return;
-
- flip(f, i);
- i = n->index(f->vertex(i));
- external_flip(n, i);
-}
-
-
-bool Foam::CV2D::internal_flip(Face_handle& f, int i)
-{
- Face_handle n = f->neighbor(i);
-
- if
- (
- CGAL::ON_POSITIVE_SIDE
- != side_of_oriented_circle(n, f->vertex(i)->point())
- )
- {
- return false;
- }
-
- flip(f, i);
-
- return true;
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::CV2D::CV2D
-(
- const Time& runTime,
- const dictionary& cvMeshDict
-)
-:
- Delaunay(),
- runTime_(runTime),
- rndGen_(64293*Pstream::myProcNo()),
- allGeometry_
- (
- IOobject
- (
- "cvSearchableSurfaces",
- runTime_.constant(),
- "triSurface",
- runTime_,
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- cvMeshDict.subDict("geometry")
- ),
- qSurf_
- (
- runTime_,
- rndGen_,
- allGeometry_,
- cvMeshDict.subDict("surfaceConformation")
- ),
- controls_(cvMeshDict, qSurf_.globalBounds()),
- cellSizeControl_
- (
- runTime,
- cvMeshDict.subDict("motionControl").subDict("shapeControlFunctions"),
- qSurf_,
- controls_.minCellSize()
- ),
- relaxationModel_
- (
- relaxationModel::New
- (
- cvMeshDict.subDict("motionControl"),
- runTime
- )
- ),
- z_
- (
- point
- (
- cvMeshDict.subDict("surfaceConformation").lookup("locationInMesh")
- ).z()
- ),
- startOfInternalPoints_(0),
- startOfSurfacePointPairs_(0),
- startOfBoundaryConformPointPairs_(0),
- featurePoints_()
-{
- Info<< meshControls() << endl;
-
- insertBoundingBox();
- insertFeaturePoints();
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::CV2D::~CV2D()
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-void Foam::CV2D::insertPoints
-(
- const point2DField& points,
- const scalar nearness
-)
-{
- Info<< "insertInitialPoints(const point2DField& points): ";
-
- startOfInternalPoints_ = number_of_vertices();
- label nVert = startOfInternalPoints_;
-
- // Add the points and index them
- forAll(points, i)
- {
- const point2D& p = points[i];
-
- if (qSurf_.wellInside(toPoint3D(p), nearness))
- {
- insert(toPoint(p))->index() = nVert++;
- }
- else
- {
- Warning
- << "Rejecting point " << p << " outside surface" << endl;
- }
- }
-
- Info<< nVert << " vertices inserted" << endl;
-
- if (meshControls().objOutput())
- {
- // Checking validity of triangulation
- assert(is_valid());
-
- writeTriangles("initial_triangles.obj", true);
- writeFaces("initial_faces.obj", true);
- }
-}
-
-
-void Foam::CV2D::insertPoints(const fileName& pointFileName)
-{
- IFstream pointsFile(pointFileName);
-
- if (pointsFile.good())
- {
- insertPoints
- (
- point2DField(pointsFile),
- 0.5*meshControls().minCellSize2()
- );
- }
- else
- {
- FatalErrorIn("insertInitialPoints")
- << "Could not open pointsFile " << pointFileName
- << exit(FatalError);
- }
-}
-
-
-void Foam::CV2D::insertGrid()
-{
- Info<< "insertInitialGrid: ";
-
- startOfInternalPoints_ = number_of_vertices();
- label nVert = startOfInternalPoints_;
-
- scalar x0 = qSurf_.globalBounds().min().x();
- scalar xR = qSurf_.globalBounds().max().x() - x0;
- int ni = int(xR/meshControls().minCellSize()) + 1;
- scalar deltax = xR/ni;
-
- scalar y0 = qSurf_.globalBounds().min().y();
- scalar yR = qSurf_.globalBounds().max().y() - y0;
- int nj = int(yR/meshControls().minCellSize()) + 1;
- scalar deltay = yR/nj;
-
- Random rndGen(1321);
- scalar pert = meshControls().randomPerturbation()*min(deltax, deltay);
-
- for (int i=0; i<ni; i++)
- {
- for (int j=0; j<nj; j++)
- {
- point p(x0 + i*deltax, y0 + j*deltay, 0);
-
- if (meshControls().randomiseInitialGrid())
- {
- p.x() += pert*(rndGen.scalar01() - 0.5);
- p.y() += pert*(rndGen.scalar01() - 0.5);
- }
-
- if (qSurf_.wellInside(p, 0.5*meshControls().minCellSize2()))
- {
- insert(Point(p.x(), p.y()))->index() = nVert++;
- }
- }
- }
-
- Info<< nVert << " vertices inserted" << endl;
-
- if (meshControls().objOutput())
- {
- // Checking validity of triangulation
- assert(is_valid());
-
- writeTriangles("initial_triangles.obj", true);
- writeFaces("initial_faces.obj", true);
- }
-}
-
-
-void Foam::CV2D::insertSurfacePointPairs()
-{
- startOfSurfacePointPairs_ = number_of_vertices();
-
- if (meshControls().insertSurfaceNearestPointPairs())
- {
- insertSurfaceNearestPointPairs();
- }
-
- write("nearest");
-
- // Insertion of point-pairs for near-points may cause protrusions
- // so insertBoundaryConformPointPairs must be executed last
- if (meshControls().insertSurfaceNearPointPairs())
- {
- insertSurfaceNearPointPairs();
- }
-
- startOfBoundaryConformPointPairs_ = number_of_vertices();
-}
-
-
-void Foam::CV2D::boundaryConform()
-{
- if (!meshControls().insertSurfaceNearestPointPairs())
- {
- markNearBoundaryPoints();
- }
-
- // Mark all the faces as SAVE_CHANGED
- for
- (
- Triangulation::Finite_faces_iterator fit = finite_faces_begin();
- fit != finite_faces_end();
- fit++
- )
- {
- fit->faceIndex() = Fb::SAVE_CHANGED;
- }
-
- for (label iter=1; iter<=meshControls().maxBoundaryConformingIter(); iter++)
- {
- label nIntersections = insertBoundaryConformPointPairs
- (
- "surfaceIntersections_" + Foam::name(iter) + ".obj"
- );
-
- if (nIntersections == 0)
- {
- break;
- }
- else
- {
- Info<< "BC iteration " << iter << ": "
- << nIntersections << " point-pairs inserted" << endl;
- }
-
- // Any faces changed by insertBoundaryConformPointPairs will now
- // be marked CHANGED, mark those as SAVE_CHANGED and those that
- // remained SAVE_CHANGED as UNCHANGED
- for
- (
- Triangulation::Finite_faces_iterator fit = finite_faces_begin();
- fit != finite_faces_end();
- fit++
- )
- {
- if (fit->faceIndex() == Fb::SAVE_CHANGED)
- {
- fit->faceIndex() = Fb::UNCHANGED;
- }
- else if (fit->faceIndex() == Fb::CHANGED)
- {
- fit->faceIndex() = Fb::SAVE_CHANGED;
- }
- }
- }
-
- Info<< nl;
-
- write("boundary");
-}
-
-
-void Foam::CV2D::removeSurfacePointPairs()
-{
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->index() >= startOfSurfacePointPairs_)
- {
- remove(vit);
- }
- }
-}
-
-
-void Foam::CV2D::newPoints()
-{
- const scalar relaxation = relaxationModel_->relaxation();
-
- Info<< "Relaxation = " << relaxation << endl;
-
- Field<point2D> dualVertices(number_of_faces());
-
- label dualVerti = 0;
-
- // Find the dual point of each tetrahedron and assign it an index.
- for
- (
- Triangulation::Finite_faces_iterator fit = finite_faces_begin();
- fit != finite_faces_end();
- ++fit
- )
- {
- fit->faceIndex() = -1;
-
- if
- (
- fit->vertex(0)->internalOrBoundaryPoint()
- || fit->vertex(1)->internalOrBoundaryPoint()
- || fit->vertex(2)->internalOrBoundaryPoint()
- )
- {
- fit->faceIndex() = dualVerti;
-
- dualVertices[dualVerti] = toPoint2D(circumcenter(fit));
-
- dualVerti++;
- }
- }
-
- dualVertices.setSize(dualVerti);
-
- Field<vector2D> displacementAccumulator
- (
- startOfSurfacePointPairs_,
- vector2D::zero
- );
-
- // Calculate target size and alignment for vertices
- scalarField sizes
- (
- number_of_vertices(),
- meshControls().minCellSize()
- );
-
- Field<vector2D> alignments
- (
- number_of_vertices(),
- vector2D(1, 0)
- );
-
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalOrBoundaryPoint())
- {
- point2D vert = toPoint2D(vit->point());
-
- // alignment and size determination
- pointIndexHit pHit;
- label hitSurface = -1;
-
- qSurf_.findSurfaceNearest
- (
- toPoint3D(vert),
- meshControls().span2(),
- pHit,
- hitSurface
- );
-
- if (pHit.hit())
- {
- vectorField norm(1);
- allGeometry_[hitSurface].getNormal
- (
- List<pointIndexHit>(1, pHit),
- norm
- );
-
- alignments[vit->index()] = toPoint2D(norm[0]);
-
- sizes[vit->index()] =
- cellSizeControl_.cellSize(toPoint3D(vit->point()));
- }
- }
- }
-
- // Info<< "Calculated alignments" << endl;
-
- scalar cosAlignmentAcceptanceAngle = 0.68;
-
- // Upper and lower edge length ratios for weight
- scalar u = 1.0;
- scalar l = 0.7;
-
- PackedBoolList pointToBeRetained(startOfSurfacePointPairs_, true);
-
- std::list<Point> pointsToInsert;
-
- for
- (
- Triangulation::Finite_edges_iterator eit = finite_edges_begin();
- eit != finite_edges_end();
- eit++
- )
- {
- Vertex_handle vA = eit->first->vertex(cw(eit->second));
- Vertex_handle vB = eit->first->vertex(ccw(eit->second));
-
- if (!vA->internalOrBoundaryPoint() || !vB->internalOrBoundaryPoint())
- {
- continue;
- }
-
- const point2D& dualV1 = dualVertices[eit->first->faceIndex()];
- const point2D& dualV2 =
- dualVertices[eit->first->neighbor(eit->second)->faceIndex()];
-
- scalar dualEdgeLength = mag(dualV1 - dualV2);
-
- point2D dVA = toPoint2D(vA->point());
- point2D dVB = toPoint2D(vB->point());
-
- Field<vector2D> alignmentDirsA(2);
-
- alignmentDirsA[0] = alignments[vA->index()];
- alignmentDirsA[1] = vector2D
- (
- -alignmentDirsA[0].y(),
- alignmentDirsA[0].x()
- );
-
- Field<vector2D> alignmentDirsB(2);
-
- alignmentDirsB[0] = alignments[vB->index()];
- alignmentDirsB[1] = vector2D
- (
- -alignmentDirsB[0].y(),
- alignmentDirsB[0].x()
- );
-
- Field<vector2D> alignmentDirs(2);
-
- forAll(alignmentDirsA, aA)
- {
- const vector2D& a(alignmentDirsA[aA]);
-
- scalar maxDotProduct = 0.0;
-
- forAll(alignmentDirsB, aB)
- {
- const vector2D& b(alignmentDirsB[aB]);
-
- scalar dotProduct = a & b;
-
- if (mag(dotProduct) > maxDotProduct)
- {
- maxDotProduct = mag(dotProduct);
-
- alignmentDirs[aA] = a + sign(dotProduct)*b;
-
- alignmentDirs[aA] /= mag(alignmentDirs[aA]);
- }
- }
- }
-
- vector2D rAB = dVA - dVB;
-
- scalar rABMag = mag(rAB);
-
- forAll(alignmentDirs, aD)
- {
- vector2D& alignmentDir = alignmentDirs[aD];
-
- if ((rAB & alignmentDir) < 0)
- {
- // swap the direction of the alignment so that has the
- // same sense as rAB
- alignmentDir *= -1;
- }
-
- scalar alignmentDotProd = ((rAB/rABMag) & alignmentDir);
-
- if (alignmentDotProd > cosAlignmentAcceptanceAngle)
- {
- scalar targetFaceSize =
- 0.5*(sizes[vA->index()] + sizes[vB->index()]);
-
- // Test for changing aspect ratio on second alignment (first
- // alignment is neartest surface normal)
- // if (aD == 1)
- // {
- // targetFaceSize *= 2.0;
- // }
-
- alignmentDir *= 0.5*targetFaceSize;
-
- vector2D delta = alignmentDir - 0.5*rAB;
-
- if (dualEdgeLength < 0.7*targetFaceSize)
- {
- delta *= 0;
- }
- else if (dualEdgeLength < targetFaceSize)
- {
- delta *=
- (
- dualEdgeLength
- /(targetFaceSize*(u - l))
- - 1/((u/l) - 1)
- );
- }
-
- if
- (
- vA->internalPoint()
- && vB->internalPoint()
- && rABMag > 1.75*targetFaceSize
- && dualEdgeLength > 0.05*targetFaceSize
- && alignmentDotProd > 0.93
- )
- {
- // Point insertion
- pointsToInsert.push_back(toPoint(0.5*(dVA + dVB)));
- }
- else if
- (
- (vA->internalPoint() || vB->internalPoint())
- && rABMag < 0.65*targetFaceSize
- )
- {
- // Point removal
-
- // Only insert a point at the midpoint of the short edge
- // if neither attached point has already been identified
- // to be removed.
- if
- (
- pointToBeRetained[vA->index()] == true
- && pointToBeRetained[vB->index()] == true
- )
- {
- pointsToInsert.push_back(toPoint(0.5*(dVA + dVB)));
- }
-
- if (vA->internalPoint())
- {
- pointToBeRetained[vA->index()] = false;
- }
-
- if (vB->internalPoint())
- {
- pointToBeRetained[vB->index()] = false;
- }
- }
- else
- {
- if (vA->internalPoint())
- {
- displacementAccumulator[vA->index()] += delta;
- }
-
- if (vB->internalPoint())
- {
- displacementAccumulator[vB->index()] += -delta;
- }
- }
- }
- }
- }
-
- vector2D totalDisp = sum(displacementAccumulator);
- scalar totalDist = sum(mag(displacementAccumulator));
-
- // Relax the calculated displacement
- displacementAccumulator *= relaxation;
-
- label numberOfNewPoints = pointsToInsert.size();
-
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalPoint())
- {
- if (pointToBeRetained[vit->index()])
- {
- pointsToInsert.push_front
- (
- toPoint
- (
- toPoint2D(vit->point())
- + displacementAccumulator[vit->index()]
- )
- );
- }
- }
- }
-
- // Clear the triangulation and reinsert the bounding box and feature points.
- // This is faster than removing and moving points.
- this->clear();
-
- insertBoundingBox();
-
- reinsertFeaturePoints();
-
- startOfInternalPoints_ = number_of_vertices();
-
- label nVert = startOfInternalPoints_;
-
- Info<< "Inserting " << numberOfNewPoints << " new points" << endl;
-
- // Use the range insert as it is faster than individually inserting points.
- insert(pointsToInsert.begin(), pointsToInsert.end());
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if
- (
- vit->type() == Vb::INTERNAL_POINT
- && vit->index() == Vb::INTERNAL_POINT
- )
- {
- vit->index() = nVert++;
- }
- }
-
- Info<< " Total displacement = " << totalDisp << nl
- << " Total distance = " << totalDist << nl
- << " Points added = " << pointsToInsert.size()
- << endl;
-
- write("internal");
-
- insertSurfacePointPairs();
-
- boundaryConform();
-
-
-// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-// Old Method
-// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-// for
-// (
-// Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
-// vit != finite_vertices_end();
-// ++vit
-// )
-// {
-// if (vit->internalPoint())
-// {
-// // Current dual-cell defining vertex ("centre")
-// point2DFromPoint defVert0 = toPoint2D(vit->point());
-
-// Triangulation::Edge_circulator ec = incident_edges(vit);
-// Triangulation::Edge_circulator ecStart = ec;
-
-// // Circulate around the edges to find the first which is not
-// // infinite
-// do
-// {
-// if (!is_infinite(ec)) break;
-// } while (++ec != ecStart);
-
-// // Store the start-end of the first non-infinte edge
-// point2D de0 = toPoint2D(circumcenter(ec->first));
-
-// // Keep track of the maximum edge length^2
-// scalar maxEdgeLen2 = 0.0;
-
-// // Keep track of the index of the longest edge
-// label edgecd0i = -1;
-
-// // Edge counter
-// label edgei = 0;
-
-// do
-// {
-// if (!is_infinite(ec))
-// {
-// // Get the end of the current edge
-// point2D de1 = toPoint2D
-// (
-// circumcenter(ec->first->neighbor(ec->second))
-// );
-
-// // Store the current edge vector
-// edges[edgei] = de1 - de0;
-
-// // Store the edge mid-point in the vertices array
-// vertices[edgei] = 0.5*(de1 + de0);
-
-// // Move the current edge end into the edge start for the
-// // next iteration
-// de0 = de1;
-
-// // Keep track of the longest edge
-
-// scalar edgeLen2 = magSqr(edges[edgei]);
-
-// if (edgeLen2 > maxEdgeLen2)
-// {
-// maxEdgeLen2 = edgeLen2;
-// edgecd0i = edgei;
-// }
-
-// edgei++;
-// }
-// } while (++ec != ecStart);
-
-// // Initialise cd0 such that the mesh will align
-// // in in the x-y directions
-// vector2D cd0(1, 0);
-
-// if (meshControls().relaxOrientation())
-// {
-// // Get the longest edge from the array and use as the primary
-// // direction of the coordinate system of the "square" cell
-// cd0 = edges[edgecd0i];
-// }
-
-// if (meshControls().nearWallAlignedDist() > 0)
-// {
-// pointIndexHit pHit = qSurf_.tree().findNearest
-// (
-// toPoint3D(defVert0),
-// meshControls().nearWallAlignedDist2()
-// );
-
-// if (pHit.hit())
-// {
-// cd0 = toPoint2D(faceNormals[pHit.index()]);
-// }
-// }
-
-// // Rotate by 45deg needed to create an averaging procedure which
-// // encourages the cells to be square
-// cd0 = vector2D(cd0.x() + cd0.y(), cd0.y() - cd0.x());
-
-// // Normalise the primary coordinate direction
-// cd0 /= mag(cd0);
-
-// // Calculate the orthogonal coordinate direction
-// vector2D cd1(-cd0.y(), cd0.x());
-
-
-// // Restart the circulator
-// ec = ecStart;
-
-// // ... and the counter
-// edgei = 0;
-
-// // Initialise the displacement for the centre and sum-weights
-// vector2D disp = vector2D::zero;
-// scalar sumw = 0;
-
-// do
-// {
-// if (!is_infinite(ec))
-// {
-// // Pick up the current edge
-// const vector2D& ei = edges[edgei];
-
-// // Calculate the centre to edge-centre vector
-// vector2D deltai = vertices[edgei] - defVert0;
-
-// // Set the weight for this edge contribution
-// scalar w = 1;
-
-// if (meshControls().squares())
-// {
-// w = magSqr(deltai.x()*ei.y() - deltai.y()*ei.x());
-// // alternative weights
-// //w = mag(deltai.x()*ei.y() - deltai.y()*ei.x());
-// //w = magSqr(ei)*mag(deltai);
-
-// // Use the following for an ~square mesh
-// // Find the coordinate contributions for this edge delta
-// scalar cd0deltai = cd0 & deltai;
-// scalar cd1deltai = cd1 & deltai;
-
-// // Create a "square" displacement
-// if (mag(cd0deltai) > mag(cd1deltai))
-// {
-// disp += (w*cd0deltai)*cd0;
-// }
-// else
-// {
-// disp += (w*cd1deltai)*cd1;
-// }
-// }
-// else
-// {
-// // Use this for a hexagon/pentagon mesh
-// disp += w*deltai;
-// }
-
-// // Sum the weights
-// sumw += w;
-// }
-// else
-// {
-// FatalErrorIn("CV2D::newPoints() const")
-// << "Infinite triangle found in internal mesh"
-// << exit(FatalError);
-// }
-
-// edgei++;
-
-// } while (++ec != ecStart);
-
-// // Calculate the average displacement
-// disp /= sumw;
-// totalDisp += disp;
-// totalDist += mag(disp);
-
-// // Move the point by a fraction of the average displacement
-// movePoint(vit, defVert0 + relaxation*disp);
-// }
-// }
-
-// Info << "\nTotal displacement = " << totalDisp
-// << " total distance = " << totalDist << endl;
-}
-
-
-//void Foam::CV2D::moveInternalPoints(const point2DField& newPoints)
-//{
-// label pointI = 0;
-
-// for
-// (
-// Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
-// vit != finite_vertices_end();
-// ++vit
-// )
-// {
-// if (vit->internalPoint())
-// {
-// movePoint(vit, newPoints[pointI++]);
-// }
-// }
-//}
-
-
-void Foam::CV2D::write() const
-{
- if (meshControls().objOutput())
- {
- writeFaces("allFaces.obj", false);
- writeFaces("faces.obj", true);
- writeTriangles("allTriangles.obj", false);
- writeTriangles("triangles.obj", true);
- writePatch("patch.pch");
- }
-}
-
-
-void Foam::CV2D::write(const word& stage) const
-{
- if (meshControls().objOutput())
- {
- Foam::mkDir(stage + "Faces");
- Foam::mkDir(stage + "Triangles");
-
- writeFaces
- (
- stage
- + "Faces/allFaces_"
- + runTime_.timeName()
- + ".obj",
- false
- );
-
- writeTriangles
- (
- stage
- + "Triangles/allTriangles_"
- + runTime_.timeName()
- + ".obj",
- false
- );
- }
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/CV2D.H b/applications/utilities/mesh/generation/cv2DMesh/CV2D.H
deleted file mode 100644
index 4948196fc2c685a7ece2aea29b8df50e4b5f20e7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/CV2D.H
+++ /dev/null
@@ -1,474 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- CV2D
-
-Description
- Conformal-Voronoi 2D automatic mesher with grid or read initial points
- and point position relaxation with optional "squarification".
-
- There are a substantial number of options to this mesher read from
- CV2DMesherDict file e.g.:
-
- // Min cell size used in tolerances when inserting points for
- // boundary conforming.
- // Also used to as the grid spacing usind in insertGrid.
- minCellSize 0.05;
-
- // Feature angle used to inser feature points
- // 0 = all features, 180 = no features
- featureAngle 45;
-
- // Maximum quadrant angle allowed at a concave corner before
- // additional "mitering" lines are added
- maxQuadAngle 110;
-
- // Should the mesh be square-dominated or of unbiased hexagons
- squares yes;
-
- // Near-wall region where cells are aligned with the wall specified as a
- // number of cell layers
- nearWallAlignedDist 3;
-
- // Chose if the cell orientation should relax during the iterations
- // or remain fixed to the x-y directions
- relaxOrientation no;
-
- // Insert near-boundary point mirror or point-pairs
- insertSurfaceNearestPointPairs yes;
-
- // Mirror near-boundary points rather than insert point-pairs
- mirrorPoints no;
-
- // Insert point-pairs vor dual-cell vertices very near the surface
- insertSurfaceNearPointPairs yes;
-
- // Choose if to randomise the initial grid created by insertGrid.
- randomiseInitialGrid yes;
-
- // Perturbation fraction, 1 = cell-size.
- randomPurturbation 0.1;
-
- // Number of relaxation iterations.
- nIterations 5;
-
- // Relaxation factor at the start of the iteration sequence.
- // 0.5 is a sensible maximum and < 0.2 converges better.
- relaxationFactorStart 0.8;
-
- // Relaxation factor at the end of the iteration sequence.
- // Should be <= relaxationFactorStart
- relaxationFactorEnd 0;
-
- writeInitialTriangulation no;
- writeFeatureTriangulation no;
- writeNearestTriangulation no;
- writeInsertedPointPairs no;
- writeFinalTriangulation yes;
-
- // Maximum number of iterations used in boundaryConform.
- maxBoundaryConformingIter 5;
-
- minEdgeLenCoeff 0.5;
- maxNotchLenCoeff 0.3;
- minNearPointDistCoeff 0.25;
- ppDistCoeff 0.05;
-
-SourceFiles
- CGALTriangulation2Ddefs.H
- indexedVertex.H
- indexedFace.H
- CV2DI.H
- CV2D.C
- CV2DIO.C
- tolerances.C
- controls.C
- insertFeaturePoints.C
- insertSurfaceNearestPointPairs.C
- insertSurfaceNearPointPairs.C
- insertBoundaryConformPointPairs.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef CV2D_H
-#define CV2D_H
-
-#define CGAL_INEXACT
-#define CGAL_HIERARCHY
-
-#include "CGALTriangulation2Ddefs.H"
-
-#include "Time.H"
-#include "point2DFieldFwd.H"
-#include "dictionary.H"
-#include "Switch.H"
-#include "PackedBoolList.H"
-#include "EdgeMap.H"
-#include "cv2DControls.H"
-#include "tolerances.H"
-#include "meshTools.H"
-#include "triSurface.H"
-#include "searchableSurfaces.H"
-#include "conformationSurfaces.H"
-#include "relaxationModel.H"
-#include "cellSizeAndAlignmentControls.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class CV2D Declaration
-\*---------------------------------------------------------------------------*/
-
-class CV2D
-:
- public Delaunay
-{
-
-private:
-
- // Private data
-
- //- The time registry of the application
- const Time& runTime_;
-
- mutable Random rndGen_;
-
- //- The surface to mesh
- //const querySurface& qSurf_;
- //- All geometry of the meshing process, including surfaces to be
- // conformed to and those to be used for refinement
- searchableSurfaces allGeometry_;
-
- conformationSurfaces qSurf_;
-
- //- Meshing controls
- cv2DControls controls_;
-
- //- The cell size control object
- cellSizeAndAlignmentControls cellSizeControl_;
-
- //- Relaxation coefficient model. Runtime selectable.
- autoPtr<relaxationModel> relaxationModel_;
-
- //- z-level
- scalar z_;
-
- //- Keep track of the start of the internal points
- label startOfInternalPoints_;
-
- //- Keep track of the start of the surface point-pairs
- label startOfSurfacePointPairs_;
-
- //- Keep track of the boundary conform point-pairs
- // stored after the insertion of the surface point-pairs in case
- // the boundary conform function is called more than once without
- // removing and insertin the surface point-pairs
- label startOfBoundaryConformPointPairs_;
-
- //- Store the feature points
- std::list<Vb> featurePoints_;
-
- //- Temporary storage for a dual-cell
- static const label maxNvert = 20;
- mutable point2D vertices[maxNvert+1];
- mutable vector2D edges[maxNvert+1];
-
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- CV2D(const CV2D&);
-
- //- Disallow default bitwise assignment
- void operator=(const CV2D&);
-
-
- //- Insert point and return it's index
- inline label insertPoint
- (
- const point2D& pt,
- const label type
- );
-
- //- Insert point and return it's index
- inline label insertPoint
- (
- const point2D& pt,
- const label index,
- const label type
- );
-
- inline label insertPoint
- (
- const Point& p,
- const label index,
- const label type
- );
-
- inline bool insertMirrorPoint
- (
- const point2D& nearSurfPt,
- const point2D& surfPt
- );
-
- //- Insert a point-pair at a distance ppDist either side of
- // surface point point surfPt in the direction n
- inline void insertPointPair
- (
- const scalar mirrorDist,
- const point2D& surfPt,
- const vector2D& n
- );
-
- //- Create the initial mesh from the bounding-box
- void insertBoundingBox();
-
- //- Check if a point is within a line.
- bool on2DLine(const point2D& p, const linePointRef& line);
-
- //- Insert point groups at the feature points.
- void insertFeaturePoints();
-
- //- Re-insert point groups at the feature points.
- void reinsertFeaturePoints();
-
- //- Insert point-pairs at the given set of points using the surface
- // normals corresponding to the given set of surface triangles
- // and write the inserted point locations to the given file.
- void insertPointPairs
- (
- const DynamicList<point2D>& nearSurfacePoints,
- const DynamicList<point2D>& surfacePoints,
- const DynamicList<label>& surfaceTris,
- const DynamicList<label>& surfaceHits,
- const fileName fName
- );
-
- //- Check to see if dual cell specified by given vertex iterator
- // intersects the boundary and hence reqires a point-pair.
- bool dualCellSurfaceIntersection
- (
- const Triangulation::Finite_vertices_iterator& vit
- ) const;
-
- //- Insert point-pairs at the nearest points on the surface to the
- // control vertex of dual-cells which intersect the boundary in order
- // to provide a boundary-layer mesh.
- // NB: This is not guaranteed to close the boundary
- void insertSurfaceNearestPointPairs();
-
- //- Insert point-pairs at small dual-cell edges on the surface in order
- // to improve the boundary-layer mesh generated by
- // insertSurfaceNearestPointPairs.
- void insertSurfaceNearPointPairs();
-
- //- Insert point-pair and correcting the Finite_vertices_iterator
- // to account for the additional vertices
- void insertPointPair
- (
- Triangulation::Finite_vertices_iterator& vit,
- const point2D& p,
- const label trii,
- const label hitSurface
- );
-
- //- Insert point-pair at the best intersection point between the lines
- // from the dual-cell real centroid and it's vertices and the surface.
- bool insertPointPairAtIntersection
- (
- Triangulation::Finite_vertices_iterator& vit,
- const point2D& defVert,
- const point2D vertices[],
- const scalar maxProtSize
- );
-
- //- Insert point-pairs corresponding to dual-cells which intersect
- // the boundary surface
- label insertBoundaryConformPointPairs(const fileName& fName);
-
- void markNearBoundaryPoints();
-
- //- Restore the Delaunay contraint
- void fast_restore_Delaunay(Vertex_handle vh);
-
- // Flip operations used by fast_restore_Delaunay
- void external_flip(Face_handle& f, int i);
- bool internal_flip(Face_handle& f, int i);
-
- //- Write all the faces and all the triangles at a particular stage.
- void write(const word& stage) const;
-
-
-public:
-
- //- Runtime type information
- ClassName("CV2D");
-
-
- // Constructors
-
- //- Construct for given surface
- CV2D(const Time& runTime, const dictionary& controlDict);
-
-
- //- Destructor
- ~CV2D();
-
-
- // Member Functions
-
- // Access
-
- inline const cv2DControls& meshControls() const;
-
-
- // Conversion functions between point2D, point and Point
-
- inline const point2D& toPoint2D(const point&) const;
- inline const point2DField toPoint2D(const pointField&) const;
- inline point toPoint3D(const point2D&) const;
-
- #ifdef CGAL_INEXACT
- typedef const point2D& point2DFromPoint;
- typedef const Point& PointFromPoint2D;
- #else
- typedef point2D point2DFromPoint;
- typedef Point PointFromPoint2D;
- #endif
-
- inline point2DFromPoint toPoint2D(const Point&) const;
- inline PointFromPoint2D toPoint(const point2D&) const;
- inline point toPoint3D(const Point&) const;
-
-
- // Point insertion
-
- //- Create the initial mesh from the given internal points.
- // Points must be inside the boundary by at least nearness
- // otherwise they are ignored.
- void insertPoints
- (
- const point2DField& points,
- const scalar nearness
- );
-
- //- Create the initial mesh from the internal points in the given
- // file. Points outside the geometry are ignored.
- void insertPoints(const fileName& pointFileName);
-
- //- Create the initial mesh as a regular grid of points.
- // Points outside the geometry are ignored.
- void insertGrid();
-
- //- Insert all surface point-pairs from
- // insertSurfaceNearestPointPairs and
- // findIntersectionForOutsideCentroid
- void insertSurfacePointPairs();
-
- //- Insert point-pairs where there are protrusions into
- // or out of the surface
- void boundaryConform();
-
-
- // Point removal
-
- //- Remove the point-pairs introduced by insertSurfacePointPairs
- // and boundaryConform
- void removeSurfacePointPairs();
-
-
- // Point motion
-
- inline void movePoint(const Vertex_handle& vh, const Point& P);
-
- //- Move the internal points to the given new locations and update
- // the triangulation to ensure it is Delaunay
- // void moveInternalPoints(const point2DField& newPoints);
-
- //- Calculate the displacements to create the new points
- void newPoints();
-
- //- Extract patch names and sizes.
- void extractPatches
- (
- wordList& patchNames,
- labelList& patchSizes,
- EdgeMap<label>& mapEdgesRegion,
- EdgeMap<label>& indirectPatchEdge
- ) const;
-
-
- // Write
-
- //- Write internal points to .obj file
- void writePoints(const fileName& fName, bool internalOnly) const;
-
- //- Write triangles as .obj file
- void writeTriangles(const fileName& fName, bool internalOnly) const;
-
- //- Write dual faces as .obj file
- void writeFaces(const fileName& fName, bool internalOnly) const;
-
- //- Calculates dual points (circumcentres of tets) and faces
- // (point-cell walk of tets).
- // Returns:
- // - dualPoints (in triangle ordering)
- // - dualFaces (compacted)
- void calcDual
- (
- point2DField& dualPoints,
- faceList& dualFaces,
- wordList& patchNames,
- labelList& patchSizes,
- EdgeMap<label>& mapEdgesRegion,
- EdgeMap<label>& indirectPatchEdge
- ) const;
-
- //- Write patch
- void writePatch(const fileName& fName) const;
-
- void write() const;
-};
-
-
-inline bool boundaryTriangle(const CV2D::Face_handle fc);
-inline bool outsideTriangle(const CV2D::Face_handle fc);
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "CV2DI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/CV2DI.H b/applications/utilities/mesh/generation/cv2DMesh/CV2DI.H
deleted file mode 100644
index 42f4757df12822197abe8ebcd2c5c8bc3f247208..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/CV2DI.H
+++ /dev/null
@@ -1,227 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-inline Foam::label Foam::CV2D::insertPoint
-(
- const point2D& p,
- const label type
-)
-{
- uint nVert = number_of_vertices();
-
- return insertPoint(toPoint(p), nVert, type);
-}
-
-
-inline Foam::label Foam::CV2D::insertPoint
-(
- const point2D& p,
- const label index,
- const label type
-)
-{
- return insertPoint(toPoint(p), index, type);
-}
-
-
-inline Foam::label Foam::CV2D::insertPoint
-(
- const Point& p,
- const label index,
- const label type
-)
-{
- uint nVert = number_of_vertices();
-
- Vertex_handle vh = insert(p);
-
- if (nVert == number_of_vertices())
- {
- WarningIn("Foam::CV2D::insertPoint")
- << "Failed to insert point " << toPoint2D(p) << endl;
- }
- else
- {
- vh->index() = index;
- vh->type() = type;
- }
-
- return vh->index();
-}
-
-
-inline bool Foam::CV2D::insertMirrorPoint
-(
- const point2D& nearSurfPt,
- const point2D& surfPt
-)
-{
- point2D mirrorPoint(2*surfPt - nearSurfPt);
-
- if (qSurf_.outside(toPoint3D(mirrorPoint)))
- {
- insertPoint(mirrorPoint, Vb::MIRROR_POINT);
- return true;
- }
- else
- {
- return false;
- }
-}
-
-
-inline void Foam::CV2D::insertPointPair
-(
- const scalar ppDist,
- const point2D& surfPt,
- const vector2D& n
-)
-{
- vector2D ppDistn = ppDist*n;
-
- label master = insertPoint
- (
- surfPt - ppDistn,
- number_of_vertices() + 1
- );
-
- insertPoint(surfPt + ppDistn, master);
-}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-inline const Foam::cv2DControls& Foam::CV2D::meshControls() const
-{
- return controls_;
-}
-
-
-inline const Foam::point2D& Foam::CV2D::toPoint2D(const point& p) const
-{
- return reinterpret_cast<const point2D&>(p);
-}
-
-
-inline const Foam::point2DField Foam::CV2D::toPoint2D(const pointField& p) const
-{
- point2DField temp(p.size());
- forAll(temp, pointI)
- {
- temp[pointI] = point2D(p[pointI].x(), p[pointI].y());
- }
- return temp;
-}
-
-
-inline Foam::point Foam::CV2D::toPoint3D(const point2D& p) const
-{
- return point(p.x(), p.y(), z_);
-}
-
-
-#ifdef CGAL_INEXACT
-
-inline Foam::CV2D::point2DFromPoint Foam::CV2D::toPoint2D(const Point& P) const
-{
- return reinterpret_cast<point2DFromPoint>(P);
-}
-
-
-inline Foam::CV2D::PointFromPoint2D Foam::CV2D::toPoint(const point2D& p) const
-{
- return reinterpret_cast<PointFromPoint2D>(p);
-}
-
-#else
-
-inline Foam::CV2D::point2DFromPoint Foam::CV2D::toPoint2D(const Point& P) const
-{
- return point2D(CGAL::to_double(P.x()), CGAL::to_double(P.y()));
-}
-
-
-inline Foam::CV2D::PointFromPoint2D Foam::CV2D::toPoint(const point2D& p) const
-{
- return Point(p.x(), p.y());
-}
-
-#endif
-
-
-inline Foam::point Foam::CV2D::toPoint3D(const Point& P) const
-{
- return point(CGAL::to_double(P.x()), CGAL::to_double(P.y()), z_);
-}
-
-
-inline void Foam::CV2D::movePoint(const Vertex_handle& vh, const Point& P)
-{
- int i = vh->index();
- int t = vh->type();
-
- remove(vh);
-
- Vertex_handle newVh = insert(P);
-
- newVh->index() = i;
- newVh->type() = t;
-
- // label i = vh->index();
- // move(vh, P);
- // vh->index() = i;
-
- //vh->set_point(P);
- //fast_restore_Delaunay(vh);
-}
-
-
-// * * * * * * * * * * * * * * * Friend Functions * * * * * * * * * * * * * //
-
-inline bool Foam::boundaryTriangle(const CV2D::Face_handle fc)
-{
- return boundaryTriangle
- (
- *fc->vertex(0),
- *fc->vertex(1),
- *fc->vertex(2)
- );
-}
-
-
-inline bool Foam::outsideTriangle(const CV2D::Face_handle fc)
-{
- return outsideTriangle
- (
- *fc->vertex(0),
- *fc->vertex(1),
- *fc->vertex(2)
- );
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/CV2DIO.C b/applications/utilities/mesh/generation/cv2DMesh/CV2DIO.C
deleted file mode 100644
index 0223c28ebec89849b1e74133e6ddda48ffab4a08..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/CV2DIO.C
+++ /dev/null
@@ -1,386 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "CV2D.H"
-#include "OFstream.H"
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-void Foam::CV2D::writePoints(const fileName& fName, bool internalOnly) const
-{
- Info<< "Writing points to " << fName << nl << endl;
- OFstream str(fName);
-
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (!internalOnly || vit->internalOrBoundaryPoint())
- {
- meshTools::writeOBJ(str, toPoint3D(vit->point()));
- }
- }
-}
-
-
-void Foam::CV2D::writeTriangles(const fileName& fName, bool internalOnly) const
-{
- Info<< "Writing triangles to " << fName << nl << endl;
- OFstream str(fName);
-
- labelList vertexMap(number_of_vertices(), -2);
- label verti = 0;
-
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (!internalOnly || !vit->farPoint())
- {
- vertexMap[vit->index()] = verti++;
- meshTools::writeOBJ(str, toPoint3D(vit->point()));
- }
- }
-
- for
- (
- Triangulation::Finite_faces_iterator fit = finite_faces_begin();
- fit != finite_faces_end();
- ++fit
- )
- {
- if
- (
- !internalOnly
- || (
- fit->vertex(0)->internalOrBoundaryPoint()
- || fit->vertex(1)->internalOrBoundaryPoint()
- || fit->vertex(2)->internalOrBoundaryPoint()
- )
- )
- {
- str << "f";
- for (label i = 0; i < 3; ++i)
- {
- str << " " << vertexMap[fit->vertex(i)->index()] + 1;
- }
- str << nl;
- }
- }
-}
-
-
-void Foam::CV2D::writeFaces(const fileName& fName, bool internalOnly) const
-{
- Info<< "Writing dual faces to " << fName << nl << endl;
- OFstream str(fName);
-
- label dualVerti = 0;
-
- for
- (
- Triangulation::Finite_faces_iterator fit = finite_faces_begin();
- fit != finite_faces_end();
- ++fit
- )
- {
- if
- (
- !internalOnly
- || (
- fit->vertex(0)->internalOrBoundaryPoint()
- || fit->vertex(1)->internalOrBoundaryPoint()
- || fit->vertex(2)->internalOrBoundaryPoint()
- )
- )
- {
- fit->faceIndex() = dualVerti++;
- meshTools::writeOBJ(str, toPoint3D(circumcenter(fit)));
- }
- else
- {
- fit->faceIndex() = -1;
- }
- }
-
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (!internalOnly || vit->internalOrBoundaryPoint())
- {
- Face_circulator fcStart = incident_faces(vit);
- Face_circulator fc = fcStart;
-
- str<< 'f';
-
- do
- {
- if (!is_infinite(fc))
- {
- if (fc->faceIndex() < 0)
- {
- FatalErrorIn
- (
- "Foam::CV2D::writeFaces"
- "(const fileName& fName, bool internalOnly)"
- )<< "Dual face uses vertex defined by a triangle"
- " defined by an external point"
- << exit(FatalError);
- }
-
- str<< ' ' << fc->faceIndex() + 1;
- }
- } while (++fc != fcStart);
-
- str<< nl;
- }
- }
-}
-
-
-void Foam::CV2D::extractPatches
-(
- wordList& patchNames,
- labelList& patchSizes,
- EdgeMap<label>& mapEdgesRegion,
- EdgeMap<label>& indirectPatchEdge
-) const
-{
- label nPatches = qSurf_.patchNames().size() + 1;
- label defaultPatchIndex = qSurf_.patchNames().size();
-
- patchNames.setSize(nPatches);
- patchSizes.setSize(nPatches, 0);
- mapEdgesRegion.clear();
-
- const wordList& existingPatches = qSurf_.patchNames();
-
- forAll(existingPatches, sP)
- {
- patchNames[sP] = existingPatches[sP];
- }
-
- patchNames[defaultPatchIndex] = "CV2D_default_patch";
-
- for
- (
- Triangulation::Finite_edges_iterator eit = finite_edges_begin();
- eit != finite_edges_end();
- ++eit
- )
- {
- Face_handle fOwner = eit->first;
- Face_handle fNeighbor = fOwner->neighbor(eit->second);
-
- Vertex_handle vA = fOwner->vertex(cw(eit->second));
- Vertex_handle vB = fOwner->vertex(ccw(eit->second));
-
- if
- (
- (vA->internalOrBoundaryPoint() && !vB->internalOrBoundaryPoint())
- || (vB->internalOrBoundaryPoint() && !vA->internalOrBoundaryPoint())
- )
- {
- point ptA = toPoint3D(vA->point());
- point ptB = toPoint3D(vB->point());
-
- label patchIndex = qSurf_.findPatch(ptA, ptB);
-
- if (patchIndex == -1)
- {
- patchIndex = defaultPatchIndex;
-
- WarningIn("Foam::CV2D::extractPatches")
- << "Dual face found that is not on a surface "
- << "patch. Adding to CV2D_default_patch."
- << endl;
- }
-
- edge e(fOwner->faceIndex(), fNeighbor->faceIndex());
- patchSizes[patchIndex]++;
- mapEdgesRegion.insert(e, patchIndex);
-
- if (!pointPair(*vA, *vB))
- {
- indirectPatchEdge.insert(e, 1);
- }
- }
- }
-}
-
-
-void Foam::CV2D::calcDual
-(
- point2DField& dualPoints,
- faceList& dualFaces,
- wordList& patchNames,
- labelList& patchSizes,
- EdgeMap<label>& mapEdgesRegion,
- EdgeMap<label>& indirectPatchEdge
-) const
-{
- // Dual points stored in triangle order.
- dualPoints.setSize(number_of_faces());
- label dualVerti = 0;
-
- for
- (
- Triangulation::Finite_faces_iterator fit = finite_faces_begin();
- fit != finite_faces_end();
- ++fit
- )
- {
- if
- (
- fit->vertex(0)->internalOrBoundaryPoint()
- || fit->vertex(1)->internalOrBoundaryPoint()
- || fit->vertex(2)->internalOrBoundaryPoint()
- )
- {
- fit->faceIndex() = dualVerti;
-
- dualPoints[dualVerti++] = toPoint2D(circumcenter(fit));
- }
- else
- {
- fit->faceIndex() = -1;
- }
- }
-
- dualPoints.setSize(dualVerti);
-
- extractPatches(patchNames, patchSizes, mapEdgesRegion, indirectPatchEdge);
-
- forAll(patchNames, patchI)
- {
- Info<< "Patch " << patchNames[patchI]
- << " has size " << patchSizes[patchI] << endl;
- }
-
- // Create dual faces
- // ~~~~~~~~~~~~~~~~~
-
- dualFaces.setSize(number_of_vertices());
- label dualFacei = 0;
- labelList faceVerts(maxNvert);
-
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalOrBoundaryPoint())
- {
- Face_circulator fcStart = incident_faces(vit);
- Face_circulator fc = fcStart;
- label verti = 0;
-
- do
- {
- if (!is_infinite(fc))
- {
- if (fc->faceIndex() < 0)
- {
- FatalErrorIn
- (
- "Foam::CV2D::calcDual"
- "(point2DField& dualPoints, faceList& dualFaces)"
- )<< "Dual face uses vertex defined by a triangle"
- " defined by an external point"
- << exit(FatalError);
- }
-
- // Look up the index of the triangle
- faceVerts[verti++] = fc->faceIndex();
- }
- } while (++fc != fcStart);
-
- if (faceVerts.size() > 2)
- {
- dualFaces[dualFacei++] =
- face(labelList::subList(faceVerts, verti));
- }
- else
- {
- Info<< "From triangle point:" << vit->index()
- << " coord:" << toPoint2D(vit->point())
- << " generated illegal dualFace:" << faceVerts
- << endl;
- }
- }
- }
-
- dualFaces.setSize(dualFacei);
-}
-
-
-void Foam::CV2D::writePatch(const fileName& fName) const
-{
- point2DField dual2DPoints;
- faceList dualFaces;
- wordList patchNames;
- labelList patchSizes;
- EdgeMap<label> mapEdgesRegion;
- EdgeMap<label> indirectPatchEdge;
-
- calcDual
- (
- dual2DPoints,
- dualFaces,
- patchNames,
- patchSizes,
- mapEdgesRegion,
- indirectPatchEdge
- );
-
- pointField dualPoints(dual2DPoints.size());
- forAll(dualPoints, ip)
- {
- dualPoints[ip] = toPoint3D(dual2DPoints[ip]);
- }
-
- // Dump as primitive patch to be read by extrudeMesh.
- OFstream str(fName);
-
- Info<< "Writing patch to be used with extrudeMesh to file " << fName
- << endl;
-
- str << dualPoints << nl << dualFaces << nl;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/Make/files b/applications/utilities/mesh/generation/cv2DMesh/Make/files
deleted file mode 100755
index f7f70afa2af7b1fbc34d268dc45efb10c36fb1f7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/Make/files
+++ /dev/null
@@ -1,12 +0,0 @@
-#include CGAL_FILES
-
-CV2D.C
-insertFeaturePoints.C
-insertSurfaceNearestPointPairs.C
-insertSurfaceNearPointPairs.C
-insertBoundaryConformPointPairs.C
-CV2DIO.C
-shortEdgeFilter2D.C
-cv2DMesh.C
-
-EXE = $(FOAM_APPBIN)/cv2DMesh
diff --git a/applications/utilities/mesh/generation/cv2DMesh/Make/options b/applications/utilities/mesh/generation/cv2DMesh/Make/options
deleted file mode 100755
index 37c8ed4aeaebf4a61bb22f5c42f13d90f5f87629..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/Make/options
+++ /dev/null
@@ -1,43 +0,0 @@
-EXE_DEBUG = -DFULLDEBUG -g -O0
-EXE_FROUNDING_MATH = -frounding-math
-EXE_NDEBUG = -DNDEBUG
-
-include $(GENERAL_RULES)/CGAL
-FFLAGS = -DCGAL_FILES='"${CGAL_ARCH_PATH}/share/files"'
-
-EXE_INC = \
- ${EXE_FROUNDING_MATH} \
- ${EXE_NDEBUG} \
- ${CGAL_INC} \
- -I$(FOAM_APP)/utilities/mesh/generation/extrude2DMesh/extrude2DMesh/lnInclude \
- -I../cvMesh/vectorTools \
- -IconformalVoronoi2DMesh/lnInclude \
- -I$(FOAM_APP)/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/lnInclude \
- -I$(LIB_SRC)/parallel/decompose/decompositionMethods/lnInclude \
- -I$(LIB_SRC)/finiteVolume/lnInclude \
- -I$(LIB_SRC)/meshTools/lnInclude \
- -I$(LIB_SRC)/surfMesh/lnInclude \
- -I$(LIB_SRC)/edgeMesh/lnInclude \
- -I$(LIB_SRC)/dynamicMesh/lnInclude \
- -I$(LIB_SRC)/mesh/extrudeModel/lnInclude \
- -I$(LIB_SRC)/sampling/lnInclude \
- -I$(LIB_SRC)/triSurface/lnInclude \
- -I$(LIB_SRC)/fileFormats/lnInclude \
-
-EXE_LIBS = \
- $(CGAL_LIBS) \
- -lboost_thread \
- -lmpfr \
- -lextrude2DMesh \
- -lextrudeModel \
- -lcv2DMesh \
- -lconformalVoronoiMesh \
- -lmeshTools \
- -lsurfMesh \
- -ledgeMesh \
- -ltriSurface \
- -ldynamicMesh \
- -ldecompositionMethods \
- -L$(FOAM_LIBBIN)/dummy -lptscotchDecomp \
- -lsampling \
- -lfileFormats
diff --git a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/Make/files b/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/Make/files
deleted file mode 100755
index e35fec7b7139b6fe33ab9dfbbd570dc566db3150..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/Make/files
+++ /dev/null
@@ -1,3 +0,0 @@
-cv2DControls/cv2DControls.C
-
-LIB = $(FOAM_LIBBIN)/libcv2DMesh
\ No newline at end of file
diff --git a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/Make/options b/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/Make/options
deleted file mode 100755
index 79be6f3a7dd8fa81ba203d5ab8572c446c43a6c7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/Make/options
+++ /dev/null
@@ -1,3 +0,0 @@
-EXE_INC =
-
-LIB_LIBS =
diff --git a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/cv2DControls/cv2DControls.C b/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/cv2DControls/cv2DControls.C
deleted file mode 100644
index 1ec4442e10f7ecf8bc1a704f880824ad459df496..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/cv2DControls/cv2DControls.C
+++ /dev/null
@@ -1,154 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*----------------------------------------------------------------------------*/
-
-#include "cv2DControls.H"
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-
-Foam::cv2DControls::cv2DControls
-(
- const dictionary& controlDict,
- const boundBox& bb
-)
-:
- dict_(controlDict),
-
- motionControl_(controlDict.subDict("motionControl")),
- conformationControl_(controlDict.subDict("surfaceConformation")),
-
- minCellSize_(readScalar(motionControl_.lookup("minCellSize"))),
- minCellSize2_(Foam::sqr(minCellSize_)),
-
- maxQuadAngle_(readScalar(conformationControl_.lookup("maxQuadAngle"))),
-
- nearWallAlignedDist_
- (
- readScalar(motionControl_.lookup("nearWallAlignedDist"))*minCellSize_
- ),
- nearWallAlignedDist2_(Foam::sqr(nearWallAlignedDist_)),
-
- insertSurfaceNearestPointPairs_
- (
- conformationControl_.lookup("insertSurfaceNearestPointPairs")
- ),
- mirrorPoints_(conformationControl_.lookup("mirrorPoints")),
- insertSurfaceNearPointPairs_
- (
- conformationControl_.lookup("insertSurfaceNearPointPairs")
- ),
-
- objOutput_(motionControl_.lookupOrDefault<Switch>("objOutput", false)),
-
- meshedSurfaceOutput_
- (
- motionControl_.lookupOrDefault<Switch>("meshedSurfaceOutput", false)
- ),
-
- randomiseInitialGrid_(conformationControl_.lookup("randomiseInitialGrid")),
- randomPerturbation_
- (
- readScalar(conformationControl_.lookup("randomPerturbation"))
- ),
-
- maxBoundaryConformingIter_
- (
- readLabel(conformationControl_.lookup("maxBoundaryConformingIter"))
- ),
-
- span_
- (
- max(mag(bb.max().x()), mag(bb.min().x()))
- + max(mag(bb.max().y()), mag(bb.min().y()))
- ),
- span2_(Foam::sqr(span_)),
-
- minEdgeLen_
- (
- readScalar(conformationControl_.lookup("minEdgeLenCoeff"))
- *minCellSize_
- ),
- minEdgeLen2_(Foam::sqr(minEdgeLen_)),
-
- maxNotchLen_
- (
- readScalar(conformationControl_.lookup("maxNotchLenCoeff"))
- *minCellSize_
- ),
- maxNotchLen2_(Foam::sqr(maxNotchLen_)),
-
- minNearPointDist_
- (
- readScalar(conformationControl_.lookup("minNearPointDistCoeff"))
- *minCellSize_
- ),
- minNearPointDist2_(Foam::sqr(minNearPointDist_)),
-
- ppDist_
- (
- readScalar(conformationControl_.lookup("pointPairDistanceCoeff"))
- *minCellSize_
- )
-{}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::cv2DControls::~cv2DControls()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-void Foam::cv2DControls::write(Ostream& os) const
-{
- os.indentLevel() = 1;
- os.precision(2);
- os.flags(ios_base::scientific);
-
- os << nl << "Outputting CV2D Mesher controls:" << nl
- << token::BEGIN_BLOCK << nl
- << indent << "minCellSize2_ : " << minCellSize2_ << nl
- << indent << "span_ / span2_ : " << span_ << " / " << span2_ << nl
- << indent << "maxNotchLen2_ : " << maxNotchLen2_ << nl
- << indent << "minNearPointDist2_ : " << minNearPointDist2_ << nl
- << indent << "nearWallAlignedDist2_ : " << nearWallAlignedDist2_ << nl
- << indent << "ppDist_ : " << ppDist_ << nl
- << indent << "minEdgeLen2_ : " << minEdgeLen2_ << nl
- << token::END_BLOCK << endl;
-}
-
-
-// * * * * * * * * * * * * * * IOStream operators * * * * * * * * * * * * * //
-
-Foam::Ostream& Foam::operator<<(Ostream& os, const cv2DControls& s)
-{
- s.write(os);
- return os;
-}
-
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/cv2DControls/cv2DControls.H b/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/cv2DControls/cv2DControls.H
deleted file mode 100644
index fb357dd62dc28a30a5c98a0d82b93ed00d74c30e..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/cv2DControls/cv2DControls.H
+++ /dev/null
@@ -1,260 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::cv2DControls
-
-Description
- Controls for the 2D CV mesh generator.
-
-SourceFiles
- cv2DControls.C
- cv2DControlsI.H
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef cv2DControls_H
-#define cv2DControls_H
-
-#include "Switch.H"
-#include "dictionary.H"
-#include "boundBox.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class cv2DControls Declaration
-\*---------------------------------------------------------------------------*/
-
-class cv2DControls
-{
- // Private data
-
- //- Description of data_
- const dictionary& dict_;
-
- const dictionary& motionControl_;
-
- const dictionary& conformationControl_;
-
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- cv2DControls(const cv2DControls&);
-
- //- Disallow default bitwise assignment
- void operator=(const cv2DControls&);
-
-
-public:
-
- // Controls
-
- //- Minimum cell size below which protusions through the surface are
- // not split
- scalar minCellSize_;
-
- //- Square of minCellSize
- scalar minCellSize2_;
-
- //- Maximum quadrant angle allowed at a concave corner before
- // additional "mitering" lines are added
- scalar maxQuadAngle_;
-
- //- Near-wall region where cells are aligned with the wall
- scalar nearWallAlignedDist_;
-
- //- Square of nearWallAlignedDist
- scalar nearWallAlignedDist2_;
-
- //- Insert near-boundary point mirror or point-pairs
- Switch insertSurfaceNearestPointPairs_;
-
- //- Mirror near-boundary points rather than insert point-pairs
- Switch mirrorPoints_;
-
- //- Insert point-pairs vor dual-cell vertices very near the surface
- Switch insertSurfaceNearPointPairs_;
-
- Switch objOutput_;
-
- Switch meshedSurfaceOutput_;
-
- Switch randomiseInitialGrid_;
-
- scalar randomPerturbation_;
-
- label maxBoundaryConformingIter_;
-
-
- // Tolerances
-
- //- Maximum cartesian span of the geometry
- scalar span_;
-
- //- Square of span
- scalar span2_;
-
- //- Minumum edge-length of the cell size below which protusions
- // through the surface are not split
- scalar minEdgeLen_;
-
- //- Square of minEdgeLen
- scalar minEdgeLen2_;
-
- //- Maximum notch size below which protusions into the surface are
- // not filled
- scalar maxNotchLen_;
-
- //- Square of maxNotchLen
- scalar maxNotchLen2_;
-
- //- The minimum distance alowed between a dual-cell vertex
- // and the surface before a point-pair is introduced
- scalar minNearPointDist_;
-
- //- Square of minNearPoint
- scalar minNearPointDist2_;
-
- //- Distance between boundary conforming point-pairs
- scalar ppDist_;
-
- //- Square of ppDist
- scalar ppDist2_;
-
-
- // Constructors
-
- cv2DControls
- (
- const dictionary& controlDict,
- const boundBox& bb
- );
-
-
- //- Destructor
- ~cv2DControls();
-
-
- // Member Functions
-
- // Access
-
- //- Return the minimum cell size
- inline scalar minCellSize() const;
-
- //- Return the square of the minimum cell size
- inline scalar minCellSize2() const;
-
- //- Return the maximum quadrant angle
- inline scalar maxQuadAngle() const;
-
- //- Return number of layers to align with the nearest wall
- inline scalar nearWallAlignedDist() const;
-
- //- Return square of nearWallAlignedDist
- inline scalar nearWallAlignedDist2() const;
-
- //- Return insertSurfaceNearestPointPairs Switch
- inline Switch insertSurfaceNearestPointPairs() const;
-
- //- Return mirrorPoints Switch
- inline Switch mirrorPoints() const;
-
- //- Return insertSurfaceNearPointPairs Switch
- inline Switch insertSurfaceNearPointPairs() const;
-
- //- Return the objOutput Switch
- inline Switch objOutput() const;
-
- //- Return the meshedSurfaceOutput Switch
- inline Switch meshedSurfaceOutput() const;
-
- //- Return the randomise initial point layout Switch
- inline Switch randomiseInitialGrid() const;
-
- //- Return the random perturbation factor
- inline scalar randomPerturbation() const;
-
- //- Return the maximum number of boundary conformation iterations
- inline label maxBoundaryConformingIter() const;
-
- //- Return the span
- inline scalar span() const;
-
- //- Return the span squared
- inline scalar span2() const;
-
- //- Return the minEdgeLen
- inline scalar minEdgeLen() const;
-
- //- Return the minEdgeLen squared
- inline scalar minEdgeLen2() const;
-
- //- Return the maxNotchLen
- inline scalar maxNotchLen() const;
-
- //- Return the maxNotchLen squared
- inline scalar maxNotchLen2() const;
-
- //- Return the minNearPointDist
- inline scalar minNearPointDist() const;
-
- //- Return the minNearPointDist squared
- inline scalar minNearPointDist2() const;
-
- //- Return the ppDist
- inline scalar ppDist() const;
-
-
- // Write
-
- //- Write controls to output stream.
- void write(Ostream& os) const;
-
- //- Ostream Operator
- friend Ostream& operator<<
- (
- Ostream& os,
- const cv2DControls& s
- );
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "cv2DControlsI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/cv2DControls/cv2DControlsI.H b/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/cv2DControls/cv2DControlsI.H
deleted file mode 100644
index dd745a7875f14903ccfb4a685517eb565b979191..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/conformalVoronoi2DMesh/cv2DControls/cv2DControlsI.H
+++ /dev/null
@@ -1,158 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-inline Foam::scalar Foam::cv2DControls::minCellSize() const
-{
- return minCellSize_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::minCellSize2() const
-{
- return minCellSize2_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::maxQuadAngle() const
-{
- return maxQuadAngle_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::nearWallAlignedDist() const
-{
- return nearWallAlignedDist_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::nearWallAlignedDist2() const
-{
- return nearWallAlignedDist2_;
-}
-
-
-inline Foam::Switch Foam::cv2DControls::insertSurfaceNearestPointPairs() const
-{
- return insertSurfaceNearestPointPairs_;
-}
-
-
-inline Foam::Switch Foam::cv2DControls::mirrorPoints() const
-{
- return mirrorPoints_;
-}
-
-
-inline Foam::Switch Foam::cv2DControls::insertSurfaceNearPointPairs() const
-{
- return insertSurfaceNearPointPairs_;
-}
-
-
-inline Foam::Switch Foam::cv2DControls::objOutput() const
-{
- return objOutput_;
-}
-
-
-inline Foam::Switch Foam::cv2DControls::meshedSurfaceOutput() const
-{
- return meshedSurfaceOutput_;
-}
-
-
-inline Foam::Switch Foam::cv2DControls::randomiseInitialGrid() const
-{
- return randomiseInitialGrid_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::randomPerturbation() const
-{
- return randomPerturbation_;
-}
-
-
-inline Foam::label Foam::cv2DControls::maxBoundaryConformingIter() const
-{
- return maxBoundaryConformingIter_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::span() const
-{
- return span_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::span2() const
-{
- return span2_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::minEdgeLen() const
-{
- return minEdgeLen_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::minEdgeLen2() const
-{
- return minEdgeLen2_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::maxNotchLen() const
-{
- return maxNotchLen_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::maxNotchLen2() const
-{
- return maxNotchLen2_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::minNearPointDist() const
-{
- return minNearPointDist_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::minNearPointDist2() const
-{
- return minNearPointDist2_;
-}
-
-
-inline Foam::scalar Foam::cv2DControls::ppDist() const
-{
- return ppDist_;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/cv2DMesh.C b/applications/utilities/mesh/generation/cv2DMesh/cv2DMesh.C
deleted file mode 100644
index e44a249f2825043587f387d8410171c9720a065d..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/cv2DMesh.C
+++ /dev/null
@@ -1,230 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Application
- cv2DMesh
-
-Description
- Conformal-Voronoi 2D extruding automatic mesher with grid or read
- initial points and point position relaxation with optional
- "squarification".
-
-\*---------------------------------------------------------------------------*/
-
-#include "CV2D.H"
-#include "argList.H"
-
-#include "MeshedSurfaces.H"
-#include "shortEdgeFilter2D.H"
-#include "extrude2DMesh.H"
-#include "polyMesh.H"
-#include "patchToPoly2DMesh.H"
-#include "extrudeModel.H"
-#include "polyTopoChange.H"
-#include "edgeCollapser.H"
-#include "globalIndex.H"
-
-using namespace Foam;
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-int main(int argc, char *argv[])
-{
- argList::noParallel();
- argList::validArgs.clear();
- argList::validOptions.insert
- (
- "pointsFile",
- "filename"
- );
-
- #include "addOverwriteOption.H"
-
- #include "setRootCase.H"
- #include "createTime.H"
-
- // Read control dictionary
- // ~~~~~~~~~~~~~~~~~~~~~~~
- IOdictionary controlDict
- (
- IOobject
- (
- args.executable() + "Dict",
- runTime.system(),
- runTime,
- IOobject::MUST_READ_IF_MODIFIED,
- IOobject::NO_WRITE
- )
- );
-
- const dictionary& shortEdgeFilterDict
- (
- controlDict.subDict("shortEdgeFilter")
- );
- const dictionary& extrusionDict(controlDict.subDict("extrusion"));
-
- Switch extrude(extrusionDict.lookup("extrude"));
- const bool overwrite = args.optionFound("overwrite");
-
- // Read and triangulation
- // ~~~~~~~~~~~~~~~~~~~~~~
- CV2D mesh(runTime, controlDict);
-
- if (args.options().found("pointsFile"))
- {
- fileName pointFileName(IStringStream(args.options()["pointsFile"])());
- mesh.insertPoints(pointFileName);
- }
- else
- {
- mesh.insertGrid();
- }
-
- mesh.insertSurfacePointPairs();
- mesh.boundaryConform();
-
- while (runTime.loop())
- {
- Info<< nl << "Time = " << runTime.timeName() << endl;
-
- mesh.newPoints();
- }
-
- mesh.write();
-
- Info<< "Finished Delaunay in = " << runTime.cpuTimeIncrement() << " s."
- << endl;
-
- Info<< "Begin filtering short edges:" << endl;
- shortEdgeFilter2D sef(mesh, shortEdgeFilterDict);
-
- sef.filter();
-
- Info<< "Meshed surface after edge filtering :" << endl;
- sef.fMesh().writeStats(Info);
-
- if (mesh.meshControls().meshedSurfaceOutput())
- {
- Info<< "Write .obj file of the 2D mesh: MeshedSurface.obj" << endl;
- sef.fMesh().write("MeshedSurface.obj");
- }
-
- Info<< "Finished filtering in = " << runTime.cpuTimeIncrement() << " s."
- << endl;
-
- Info<< "Begin constructing a polyMesh:" << endl;
-
- patchToPoly2DMesh poly2DMesh
- (
- sef.fMesh(),
- sef.patchNames(),
- sef.patchSizes(),
- sef.mapEdgesRegion()
- );
-
- poly2DMesh.createMesh();
-
- polyMesh pMesh
- (
- IOobject
- (
- polyMesh::defaultRegion,
- runTime.constant(),
- runTime,
- IOobject::NO_READ,
- IOobject::NO_WRITE,
- false
- ),
- xferMove(poly2DMesh.points()),
- xferMove(poly2DMesh.faces()),
- xferMove(poly2DMesh.owner()),
- xferMove(poly2DMesh.neighbour())
- );
-
- Info<< "Constructing patches." << endl;
- List<polyPatch*> patches(poly2DMesh.patchNames().size());
- label countPatches = 0;
-
- forAll(patches, patchI)
- {
- if (poly2DMesh.patchSizes()[patchI] != 0)
- {
- patches[countPatches] = new polyPatch
- (
- poly2DMesh.patchNames()[patchI],
- poly2DMesh.patchSizes()[patchI],
- poly2DMesh.patchStarts()[patchI],
- countPatches,
- pMesh.boundaryMesh(),
- word::null
- );
-
- countPatches++;
- }
- }
- patches.setSize(countPatches);
- pMesh.addPatches(patches);
-
- if (extrude)
- {
- Info<< "Begin extruding the polyMesh:" << endl;
-
- {
- // Point generator
- autoPtr<extrudeModel> model(extrudeModel::New(extrusionDict));
-
- extrude2DMesh extruder(pMesh, extrusionDict, model());
-
- extruder.addFrontBackPatches();
-
- polyTopoChange meshMod(pMesh.boundaryMesh().size());
-
- extruder.setRefinement(meshMod);
-
- autoPtr<mapPolyMesh> morphMap = meshMod.changeMesh(pMesh, false);
-
- pMesh.updateMesh(morphMap);
- }
- }
-
- if (!overwrite)
- {
- runTime++;
- }
- else
- {
- pMesh.setInstance("constant");
- }
-
- pMesh.write();
-
- Info<< "Finished extruding in = "
- << runTime.cpuTimeIncrement() << " s." << endl;
-
- Info<< nl << "End\n" << endl;
-
- return 0;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/cv2DMeshDict b/applications/utilities/mesh/generation/cv2DMesh/cv2DMeshDict
deleted file mode 100644
index 0ef6d2a0c4794677e257056a9a23d3b1e59975d2..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/cv2DMeshDict
+++ /dev/null
@@ -1,208 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object cv2DMeshDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-
-geometry
-{
- laurence_clean_preciser.stl
- {
- name laurence_clean_preciser;
- type closedTriSurfaceMesh;
- //type triSurfaceMesh;
- }
-// refinementBox
-// {
-// type searchableBox;
-// min (-0.5 0.35 -1000);
-// max (-0.5 0.35 1000);
-// }
-// refinementSphere
-// {
-// type searchableSphere;
-// centre (0.85 0.4 0.0);
-// radius 0.01;
-// }
-}
-
-surfaceConformation
-{
- locationInMesh (-2.8 0.7 0.5);
-
- pointPairDistanceCoeff 0.005;
-
- minEdgeLenCoeff 0.005;
-
- maxNotchLenCoeff 0.003;
-
- minNearPointDistCoeff 0.0025;
-
- maxQuadAngle 125;
-
- // Insert near-boundary point mirror or point-pairs
- insertSurfaceNearestPointPairs yes;
-
- // Mirror near-boundary points rather than insert point-pairs
- mirrorPoints no;
-
- // Insert point-pairs vor dual-cell vertices very near the surface
- insertSurfaceNearPointPairs yes;
-
- // Maximum number of iterations used in boundaryConform.
- maxBoundaryConformingIter 5;
-
- geometryToConformTo
- {
- laurence_clean_preciser
- {
- featureMethod extendedFeatureEdgeMesh;
- extendedFeatureEdgeMesh "laurence_clean_preciser.extendedFeatureEdgeMesh";
- }
- }
-
- additionalFeatures
- {
- }
-
- // Choose if to randomise the initial grid created by insertGrid.
- randomiseInitialGrid yes;
-
- // Perturbation fraction, 1 = cell-size.
- randomPerturbation 0.1;
-
-}
-
-
-motionControl
-{
- defaultCellSize 0.05;
-
- // Assign a priority to all requests for cell sizes, the highest overrules.
- defaultPriority 0;
-
- cellSizeControlGeometry
- {
- laurence_clean_preciser
- {
- priority 1;
- mode bothSides;
- cellSizeFunction linearDistance;
- linearDistanceCoeffs
- {
- distanceCellSize 0.05;
- surfaceCellSize 0.01;
- distance 0.5;
- }
- uniformCoeffs
- {
- cellSize 0.01;
- }
- }
-// refinementBox
-// {
-// priority 1;
-// mode outside;
-// cellSizeFunction linearDistance;
-// linearDistanceCoeffs
-// {
-// distanceCellSize 0.04;
-// surfaceCellSize 0.005;
-// distance 0.2;
-// }
-// }
-// refinementSphere
-// {
-// priority 1;
-// mode outside;
-// cellSizeFunction linearDistance;
-// linearDistanceCoeffs
-// {
-// distanceCellSize 0.04;
-// surfaceCellSize 0.005;
-// distance 0.2;
-// }
-// }
- }
-
- relaxationModel adaptiveLinear;
-
- adaptiveLinearCoeffs
- {
- relaxationStart 0.5;
- relaxationEnd 0.0;
- }
-
- objOutput no;
-
- // Near-wall region where cells are aligned with the wall specified as a number
- // of cell layers
- nearWallAlignedDist 3;
-
-}
-
-shortEdgeFilter
-{
- // Factor to multiply the average of a face's edge lengths by.
- // If an edge of that face is smaller than that value then delete it.
- shortEdgeFilterFactor 0.2;
-
- // Weighting for the lengths of edges that are attached to the boundaries.
- // Used when calculating the length of an edge. Default 2.0.
- edgeAttachedToBoundaryFactor 2.0;
-}
-
-extrusion
-{
- extrude on;
-
- extrudeModel linearDirection;
- //extrudeModel wedge;
-
- patchInfo
- {
- //type empty;
- //startFace
- }
-
- patchType empty;
- //patchType wedge;
-
- nLayers 1;
-
- expansionRatio 1.0; //0.9;
-
- linearDirectionCoeffs
- {
- direction (0 0 1);
- thickness 0.1;
- }
-
- wedgeCoeffs
- {
- axisPt (0 0 0);
- axis (1 0 0);
- angle 10;
- }
-
- thickness 0.1;
-}
diff --git a/applications/utilities/mesh/generation/cv2DMesh/indexedFace.H b/applications/utilities/mesh/generation/cv2DMesh/indexedFace.H
deleted file mode 100644
index 0c30fcc952cc84f0894e7eb1476f0be0cf113ed3..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/indexedFace.H
+++ /dev/null
@@ -1,135 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- indexedFace
-
-Description
- An indexed form of CGAL::Triangulation_face_base_2<K> used to keep
- track of the vertices in the triangulation.
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef indexedFace_H
-#define indexedFace_H
-
-#include <CGAL/Triangulation_2.h>
-#include "indexedVertex.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace CGAL
-{
-
-/*---------------------------------------------------------------------------*\
- Class indexedFace Declaration
-\*---------------------------------------------------------------------------*/
-
-template<class Gt, class Fb=CGAL::Triangulation_face_base_2<Gt> >
-class indexedFace
-:
- public Fb
-{
- // Private data
-
- //- The index for this triangle face
- // -1: triangle and changed and associated data needs updating
- // >=0: index of triangles, set by external update algorithm
- int index_;
-
-
-public:
-
- enum faceTypes
- {
- UNCHANGED = 0,
- CHANGED = -1,
- SAVE_CHANGED = -2
- };
-
- typedef typename Fb::Vertex_handle Vertex_handle;
- typedef typename Fb::Face_handle Face_handle;
-
- template < typename TDS2 >
- struct Rebind_TDS
- {
- typedef typename Fb::template Rebind_TDS<TDS2>::Other Fb2;
- typedef indexedFace<Gt, Fb2> Other;
- };
-
-
- // Constructors
-
- inline indexedFace();
-
- inline indexedFace
- (
- Vertex_handle v0,
- Vertex_handle v1,
- Vertex_handle v2
- );
-
- inline indexedFace
- (
- Vertex_handle v0,
- Vertex_handle v1,
- Vertex_handle v2,
- Face_handle n0,
- Face_handle n1,
- Face_handle n2
- );
-
-
- // Member Functions
-
- inline void set_vertex(int i, Vertex_handle v);
-
- inline void set_vertices();
-
- inline void set_vertices
- (
- Vertex_handle v0,
- Vertex_handle v1,
- Vertex_handle v2
- );
-
- inline int& faceIndex();
-
- inline int faceIndex() const;
-
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace CGAL
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "indexedFaceI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/indexedFaceI.H b/applications/utilities/mesh/generation/cv2DMesh/indexedFaceI.H
deleted file mode 100644
index 367cf944333a301593995a00dceb77ac61cac60a..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/indexedFaceI.H
+++ /dev/null
@@ -1,110 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-template<class Gt, class Fb>
-inline CGAL::indexedFace<Gt, Fb>::indexedFace()
-:
- Fb(),
- index_(CHANGED)
-{}
-
-
-template<class Gt, class Fb>
-inline CGAL::indexedFace<Gt, Fb>::indexedFace
-(
- Vertex_handle v0,
- Vertex_handle v1,
- Vertex_handle v2
-)
-:
- Fb(v0, v1, v2),
- index_(CHANGED)
-{}
-
-
-template<class Gt, class Fb>
-inline CGAL::indexedFace<Gt, Fb>::indexedFace
-(
- Vertex_handle v0,
- Vertex_handle v1,
- Vertex_handle v2,
- Face_handle n0,
- Face_handle n1,
- Face_handle n2
-)
-:
- Fb(v0, v1, v2, n0, n1, n2),
- index_(CHANGED)
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-template<class Gt, class Fb>
-inline void CGAL::indexedFace<Gt, Fb>::set_vertex(int i, Vertex_handle v)
-{
- index_ = CHANGED;
- Fb::set_vertex(i, v);
-}
-
-
-template<class Gt, class Fb>
-inline void CGAL::indexedFace<Gt, Fb>::set_vertices()
-{
- index_ = CHANGED;
- Fb::set_vertices();
-}
-
-
-template<class Gt, class Fb>
-inline void CGAL::indexedFace<Gt, Fb>::set_vertices
-(
- Vertex_handle v0,
- Vertex_handle v1,
- Vertex_handle v2
-)
-{
- index_ = CHANGED;
- Fb::set_vertices(v0, v1, v2);
-}
-
-
-template<class Gt, class Fb>
-inline int& CGAL::indexedFace<Gt, Fb>::faceIndex()
-{
- return index_;
-}
-
-
-template<class Gt, class Fb>
-inline int CGAL::indexedFace<Gt, Fb>::faceIndex() const
-{
- return index_;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/indexedVertex.H b/applications/utilities/mesh/generation/cv2DMesh/indexedVertex.H
deleted file mode 100644
index ae58a0bfe5c2610f4a2651442df081e09a53fcab..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/indexedVertex.H
+++ /dev/null
@@ -1,210 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- indexedVertex
-
-Description
- An indexed form of CGAL::Triangulation_vertex_base_2<K> used to keep
- track of the vertices in the triangulation.
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef indexedVertex_H
-#define indexedVertex_H
-
-#include <CGAL/Triangulation_2.h>
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace CGAL
-{
-
-// Forward declaration of friend functions and operators
-
-template<class Gt, class Vb>
-class indexedVertex;
-
-template<class Gt, class Vb>
-bool pointPair
-(
- const indexedVertex<Gt, Vb>& v0,
- const indexedVertex<Gt, Vb>& v1
-);
-
-template<class Gt, class Vb>
-bool boundaryTriangle
-(
- const indexedVertex<Gt, Vb>& v0,
- const indexedVertex<Gt, Vb>& v1,
- const indexedVertex<Gt, Vb>& v2
-);
-
-template<class Gt, class Vb>
-bool outsideTriangle
-(
- const indexedVertex<Gt, Vb>& v0,
- const indexedVertex<Gt, Vb>& v1,
- const indexedVertex<Gt, Vb>& v2
-);
-
-/*---------------------------------------------------------------------------*\
- Class indexedVertex Declaration
-\*---------------------------------------------------------------------------*/
-
-template<class Gt, class Vb=CGAL::Triangulation_vertex_base_2<Gt> >
-class indexedVertex
-:
- public Vb
-{
- // Private data
-
- //- The index for this triangle vertex
- int index_;
-
- //- Index of pair-point :
- // NEAR_BOUNDARY_POINT : internal near boundary point.
- // INTERNAL_POINT : internal point.
- // FAR_POINT : far-point.
- // >= 0 : part of point-pair. Index of other point.
- // Lowest numbered is inside one (master).
- int type_;
-
-
-public:
-
- enum pointTypes
- {
- NEAR_BOUNDARY_POINT = -4,
- INTERNAL_POINT = -3,
- MIRROR_POINT = -2,
- FAR_POINT = -1
- };
-
- typedef typename Vb::Vertex_handle Vertex_handle;
- typedef typename Vb::Face_handle Face_handle;
- typedef typename Vb::Point Point;
-
- template<typename TDS2>
- struct Rebind_TDS
- {
- typedef typename Vb::template Rebind_TDS<TDS2>::Other Vb2;
- typedef indexedVertex<Gt,Vb2> Other;
- };
-
-
- // Constructors
-
- inline indexedVertex();
-
- inline indexedVertex(const Point& p);
-
- inline indexedVertex(const Point& p, const int index, const int& type);
-
- inline indexedVertex(const Point& p, Face_handle f);
-
- inline indexedVertex(Face_handle f);
-
-
- // Member Functions
-
- inline int& index();
-
- inline int index() const;
-
- inline int& type();
-
- inline int type() const;
-
- //- Is point a far-point
- inline bool farPoint() const;
-
- //- Is point internal, i.e. not on boundary
- inline bool internalPoint() const;
-
- //- Is point internal and near the boundary
- inline bool nearBoundary() const;
-
- //- Set the point to be near the boundary
- inline void setNearBoundary();
-
- //- Is point a mirror point
- inline bool mirrorPoint() const;
-
- //- Either master or slave of pointPair.
- inline bool pairPoint() const;
-
- //- Master of a pointPair is the lowest numbered one.
- inline bool ppMaster() const;
-
- //- Slave of a pointPair is the highest numbered one.
- inline bool ppSlave() const;
-
- //- Either original internal point or master of pointPair.
- inline bool internalOrBoundaryPoint() const;
-
- //- Is point near the boundary or part of the boundary definition
- inline bool nearOrOnBoundary() const;
-
-
- // Friend Functions
-
- //- Do the two given vertices consitute a boundary point-pair
- friend bool pointPair <Gt, Vb>
- (
- const indexedVertex<Gt, Vb>& v0,
- const indexedVertex<Gt, Vb>& v1
- );
-
- //- Do the three given vertices consitute a boundary triangle
- friend bool boundaryTriangle <Gt, Vb>
- (
- const indexedVertex<Gt, Vb>& v0,
- const indexedVertex<Gt, Vb>& v1,
- const indexedVertex<Gt, Vb>& v2
- );
-
- //- Do the three given vertices consitute an outside triangle
- friend bool outsideTriangle <Gt, Vb>
- (
- const indexedVertex<Gt, Vb>& v0,
- const indexedVertex<Gt, Vb>& v1,
- const indexedVertex<Gt, Vb>& v2
- );
-
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace CGAL
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "indexedVertexI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/indexedVertexI.H b/applications/utilities/mesh/generation/cv2DMesh/indexedVertexI.H
deleted file mode 100644
index 2d6280274f573b519ee51e034f3b7f7e767321c1..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/indexedVertexI.H
+++ /dev/null
@@ -1,233 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex()
-:
- Vb(),
- index_(INTERNAL_POINT),
- type_(INTERNAL_POINT)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex(const Point& p)
-:
- Vb(p),
- index_(INTERNAL_POINT),
- type_(INTERNAL_POINT)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex
-(
- const Point& p,
- const int index,
- const int& type
-)
-:
- Vb(p),
- index_(index),
- type_(type)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex(const Point& p, Face_handle f)
-:
- Vb(f, p),
- index_(INTERNAL_POINT),
- type_(INTERNAL_POINT)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex(Face_handle f)
-:
- Vb(f),
- index_(INTERNAL_POINT),
- type_(INTERNAL_POINT)
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-template<class Gt, class Vb>
-inline int& CGAL::indexedVertex<Gt, Vb>::index()
-{
- return index_;
-}
-
-
-template<class Gt, class Vb>
-inline int CGAL::indexedVertex<Gt, Vb>::index() const
-{
- return index_;
-}
-
-
-template<class Gt, class Vb>
-inline int& CGAL::indexedVertex<Gt, Vb>::type()
-{
- return type_;
-}
-
-
-template<class Gt, class Vb>
-inline int CGAL::indexedVertex<Gt, Vb>::type() const
-{
- return type_;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::farPoint() const
-{
- return type_ == FAR_POINT;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::internalPoint() const
-{
- return type_ <= INTERNAL_POINT;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::nearBoundary() const
-{
- return type_ == NEAR_BOUNDARY_POINT;
-}
-
-
-template<class Gt, class Vb>
-inline void CGAL::indexedVertex<Gt, Vb>::setNearBoundary()
-{
- type_ = NEAR_BOUNDARY_POINT;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::mirrorPoint() const
-{
- return type_ == MIRROR_POINT;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::pairPoint() const
-{
- return type_ >= 0;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::ppMaster() const
-{
- if (type_ > index_)
- {
- return true;
- }
- else
- {
- return false;
- }
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::ppSlave() const
-{
- if (type_ >= 0 && type_ < index_)
- {
- return true;
- }
- else
- {
- return false;
- }
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::internalOrBoundaryPoint() const
-{
- return internalPoint() || ppMaster();
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::nearOrOnBoundary() const
-{
- return pairPoint() || mirrorPoint() || nearBoundary();
-}
-
-
-// * * * * * * * * * * * * * * * Friend Functions * * * * * * * * * * * * * //
-
-template<class Gt, class Vb>
-bool CGAL::pointPair
-(
- const indexedVertex<Gt, Vb>& v0,
- const indexedVertex<Gt, Vb>& v1
-)
-{
- return v0.index_ == v1.type_ || v1.index_ == v0.type_;
-}
-
-
-template<class Gt, class Vb>
-bool CGAL::boundaryTriangle
-(
- const indexedVertex<Gt, Vb>& v0,
- const indexedVertex<Gt, Vb>& v1,
- const indexedVertex<Gt, Vb>& v2
-)
-{
- return (v0.pairPoint() && pointPair(v1, v2))
- || (v1.pairPoint() && pointPair(v2, v0))
- || (v2.pairPoint() && pointPair(v0, v1));
-}
-
-
-template<class Gt, class Vb>
-bool CGAL::outsideTriangle
-(
- const indexedVertex<Gt, Vb>& v0,
- const indexedVertex<Gt, Vb>& v1,
- const indexedVertex<Gt, Vb>& v2
-)
-{
- return (v0.farPoint() || v0.ppSlave())
- || (v1.farPoint() || v1.ppSlave())
- || (v2.farPoint() || v2.ppSlave());
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/insertBoundaryConformPointPairs.C b/applications/utilities/mesh/generation/cv2DMesh/insertBoundaryConformPointPairs.C
deleted file mode 100644
index 7db9f2dae4661c09895c0960613c56d92d6560f1..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/insertBoundaryConformPointPairs.C
+++ /dev/null
@@ -1,323 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*----------------------------------------------------------------------------*/
-
-#include "CV2D.H"
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-void Foam::CV2D::insertPointPair
-(
- Triangulation::Finite_vertices_iterator& vit,
- const point2D& p,
- const label trii,
- const label hitSurface
-)
-{
- if
- (
- !meshControls().mirrorPoints()
- || !insertMirrorPoint(toPoint2D(vit->point()), p)
- )
- {
- pointIndexHit pHit
- (
- true,
- toPoint3D(p),
- trii
- );
-
- vectorField norm(1);
- qSurf_.geometry()[hitSurface].getNormal
- (
- List<pointIndexHit>(1, pHit),
- norm
- );
-
- insertPointPair
- (
- meshControls().ppDist(),
- p,
- toPoint2D(norm[0])
- );
- }
-
- vit = Triangulation::Finite_vertices_iterator
- (
- CGAL::Filter_iterator
- <
- Triangulation::All_vertices_iterator,
- Triangulation::Infinite_tester
- >(finite_vertices_end(), vit.predicate(), vit.base())
- );
-}
-
-
-bool Foam::CV2D::insertPointPairAtIntersection
-(
- Triangulation::Finite_vertices_iterator& vit,
- const point2D& defVert,
- const point2D vertices[],
- const scalar maxProtSize2
-)
-{
- bool found = false;
- point2D interPoint;
- label interTri = -1;
- label interHitSurface = -1;
- scalar interDist2 = 0;
-
- Face_circulator fcStart = incident_faces(vit);
- Face_circulator fc = fcStart;
- label vi = 0;
-
- do
- {
- if (!is_infinite(fc))
- {
- pointIndexHit pHit;
- label hitSurface = -1;
-
- qSurf_.findSurfaceNearestIntersection
- (
- toPoint3D(defVert),
- toPoint3D(vertices[vi]),
- pHit,
- hitSurface
- );
-
- if (pHit.hit())
- {
- scalar dist2 =
- magSqr(toPoint2D(pHit.hitPoint()) - vertices[vi]);
-
- // Check the point is further away than the furthest so far
- if (dist2 > interDist2)
- {
- scalar mps2 = maxProtSize2;
-
- // If this is a boundary triangle reset the tolerance
- // to avoid finding a hit point very close to a boundary
- // vertex
- if (boundaryTriangle(fc))
- {
- mps2 = meshControls().maxNotchLen2();
- }
-
- if (dist2 > mps2)
- {
- found = true;
- interPoint = toPoint2D(pHit.hitPoint());
- interTri = pHit.index();
- interDist2 = dist2;
- interHitSurface = hitSurface;
- }
- }
- }
-
- vi++;
- }
- } while (++fc != fcStart);
-
- if (found)
- {
- insertPointPair(vit, interPoint, interTri, interHitSurface);
- return true;
- }
- else
- {
- return false;
- }
-}
-
-
-Foam::label Foam::CV2D::insertBoundaryConformPointPairs
-(
- const fileName& fName
-)
-{
- label nIntersections = 0;
-
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- vit++
- )
- {
- // Consider only those points part of point-pairs or near boundary
- if (!vit->nearOrOnBoundary())
- {
- continue;
- }
-
- // Counter-clockwise circulator
- Face_circulator fcStart = incident_faces(vit);
- Face_circulator fc = fcStart;
-
- bool infinite = false;
- bool changed = false;
-
- do
- {
- if (is_infinite(fc))
- {
- infinite = true;
- break;
- }
- else if (fc->faceIndex() < Fb::UNCHANGED)
- {
- changed = true;
- break;
- }
- } while (++fc != fcStart);
-
- // If the dual-cell is connected to the infinite point or none of the
- // faces whose circumcentres it uses have changed ignore
- if (infinite || !changed) continue;
-
- fc = fcStart;
- label nVerts = 0;
-
- do
- {
- vertices[nVerts++] = toPoint2D(circumcenter(fc));
-
- if (nVerts == maxNvert)
- {
- break;
- }
- } while (++fc != fcStart);
-
- // Check if dual-cell has a large number of faces in which case
- // assumed to be in the far-field and reject
- if (nVerts == maxNvert) continue;
-
- // Set n+1 vertex to the first vertex for easy circulating
- vertices[nVerts] = vertices[0];
-
- // Convert triangle vertex to OpenFOAM point
- point2DFromPoint defVert = toPoint2D(vit->point());
-
- scalar maxProtSize2 = meshControls().maxNotchLen2();
-
- if (vit->internalOrBoundaryPoint())
- {
- // Calculate metrics of the dual-cell
- // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- // The perimeter of the dual-cell
- scalar perimeter = 0;
-
- // Twice the area of the dual-cell
- scalar areaT2 = 0;
-
- for (int vi=0; vi<nVerts; vi++)
- {
- vector2D edge(vertices[vi+1] - vertices[vi]);
- perimeter += mag(edge);
- vector2D otherEdge = defVert - vertices[vi];
- areaT2 += mag(edge.x()*otherEdge.y() - edge.y()*otherEdge.x());
- }
-
- // If the dual-cell is very small reject refinement
- if (areaT2 < meshControls().minEdgeLen2()) continue;
-
- // Estimate the cell width
- scalar cellWidth = areaT2/perimeter;
-
-
- // Check dimensions of dual-cell
- /*
- // Quick rejection of dual-cell refinement based on it's perimeter
- if (perimeter < 2*meshControls().minCellSize()) continue;
-
- // Also check the area of the cell and reject refinement
- // if it is less than that allowed
- if (areaT2 < meshControls().minCellSize2()) continue;
-
- // Estimate the cell width and reject refinement if it is less than
- // that allowed
- if (cellWidth < 0.5*meshControls().minEdgeLen()) continue;
- */
-
- if
- (
- perimeter > 2*meshControls().minCellSize()
- && areaT2 > meshControls().minCellSize2()
- && cellWidth > 0.5*meshControls().minEdgeLen()
- )
- {
- maxProtSize2 = 0.25*meshControls().maxNotchLen2();
- }
- }
-
- if (insertPointPairAtIntersection(vit, defVert, vertices, maxProtSize2))
- {
- nIntersections++;
- }
- }
-
- return nIntersections;
-}
-
-
-void Foam::CV2D::markNearBoundaryPoints()
-{
- label count = 0;
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- vit++
- )
- {
- if (vit->internalPoint())
- {
- point vert(toPoint3D(vit->point()));
-
- pointIndexHit pHit;
- label hitSurface = -1;
-
- qSurf_.findSurfaceNearest
- (
- vert,
- 4*meshControls().minCellSize2(),
- pHit,
- hitSurface
- );
-
- if (pHit.hit())
- {
- vit->setNearBoundary();
- ++count;
- }
- }
- }
-
- Info<< count << " points marked as being near a boundary" << endl;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/insertFeaturePoints.C b/applications/utilities/mesh/generation/cv2DMesh/insertFeaturePoints.C
deleted file mode 100644
index 464557078fe09981e912b7ad3b029e41920d7a36..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/insertFeaturePoints.C
+++ /dev/null
@@ -1,394 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*----------------------------------------------------------------------------*/
-
-#include "CV2D.H"
-#include "plane.H"
-#include "unitConversion.H"
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-bool Foam::CV2D::on2DLine(const point2D& p, const linePointRef& line)
-{
- const point2D& a = toPoint2D(line.start());
- const point2D& b = toPoint2D(line.end());
-
- if
- (
- p.x() < min(a.x(), b.x())
- || p.x() > max(a.x(), b.x())
- || p.y() < min(a.y(), b.y())
- || p.y() > max(a.y(), b.y())
- )
- {
- return false;
- }
-
- return true;
-}
-
-
-void Foam::CV2D::insertFeaturePoints()
-{
- featurePoints_.clear();
- label nVert = number_of_vertices();
-
- const PtrList<extendedFeatureEdgeMesh>& feMeshes
- (
- qSurf_.features()
- );
-
- if (feMeshes.empty())
- {
- WarningIn("CV2D::insertFeaturePoints")
- << "Extended Feature Edge Mesh is empty so no feature points will "
- << "be found." << nl
- << " Use: featureMethod extendedFeatureEdgeMesh;" << nl
- << endl;
- }
-
- forAll(feMeshes, i)
- {
- const extendedFeatureEdgeMesh& feMesh(feMeshes[i]);
- const edgeList& edges = feMesh.edges();
- const pointField& points = feMesh.points();
-
- if (debug)
- {
- label nConvex = feMesh.concaveStart() - feMesh.convexStart();
- label nConcave = feMesh.mixedStart() - feMesh.concaveStart();
- label nMixed = feMesh.nonFeatureStart() - feMesh.mixedStart();
- label nExternal = feMesh.internalStart() - feMesh.externalStart();
- label nInternal = feMesh.flatStart() - feMesh.internalStart();
- label nFlat = feMesh.openStart() - feMesh.flatStart();
- label nOpen = feMesh.multipleStart() - feMesh.openStart();
- label nMultiple = edges.size() - feMesh.multipleStart();
-
- Info<< "Inserting Feature Points:" << nl
- << " Convex points: " << nConvex << nl
- << " Concave points: " << nConcave << nl
- << " Mixed points: " << nMixed << nl
- << " External edges: " << nExternal << nl
- << " Internal edges: " << nInternal << nl
- << " Flat edges: " << nFlat << nl
- << " Open edges: " << nOpen << nl
- << " Multiple edges: " << nMultiple << endl;
- }
-
- // Args: (base point, normal)
- // @todo allow user to input this
- plane zPlane(vector(0, 0, z_), vector(0, 0, 1));
-
- if (debug)
- {
- Info<< " plane: " << zPlane << " " << z_ << endl;
- }
-
- forAll(edges, edgeI)
- {
- const edge& e = feMesh.edges()[edgeI];
-
- const point& ep0 = points[e.start()];
- const point& ep1 = points[e.end()];
-
- const linePointRef line(ep0, ep1);
-
- scalar intersect = zPlane.lineIntersect(line);
-
- point2D featPoint = toPoint2D(intersect * (ep1 - ep0) + ep0);
-
- if (on2DLine(featPoint, line))
- {
- vector2DField fpn = toPoint2D(feMesh.edgeNormals(edgeI));
-
- vector2D cornerNormal = sum(fpn);
- cornerNormal /= mag(cornerNormal);
-
- if (debug)
- {
- Info<< nl << " line: " << line << nl
- << " vec: " << line.vec() << nl
- << " featurePoint: " << featPoint << nl
- << " line length: " << line.mag() << nl
- << " intersect: " << intersect << endl;
- }
-
- if
- (
- feMesh.getEdgeStatus(edgeI)
- == extendedFeatureEdgeMesh::EXTERNAL
- )
- {
- // Convex Point
- Foam::point2D internalPt =
- featPoint - meshControls().ppDist()*cornerNormal;
-
- if (debug)
- {
- Info<< "PREC: " << internalPt << nl
- << " : " << featPoint << nl
- << " : " << meshControls().ppDist() << nl
- << " : " << cornerNormal << endl;
- }
-
- featurePoints_.push_back
- (
- Vb
- (
- toPoint(internalPt),
- nVert,
- nVert + 1
- )
- );
- label masterPtIndex = nVert++;
-
- forAll(fpn, nI)
- {
- const vector n3D(fpn[nI][0], fpn[nI][1], 0.0);
-
- plane planeN = plane(toPoint3D(featPoint), n3D);
-
- Foam::point2D externalPt =
- internalPt
- + (
- 2.0
- * planeN.distance(toPoint3D(internalPt))
- * fpn[nI]
- );
-
- featurePoints_.push_back
- (
- Vb
- (
- toPoint(externalPt),
- nVert++,
- masterPtIndex
- )
- );
-
- if (debug)
- {
- Info<< " side point: " << externalPt << endl;
- }
- }
-
- if (debug)
- {
- Info<< "Convex Point: " << featPoint << nl
- << " corner norm: " << cornerNormal << nl
- << " reference: " << internalPt << endl;
- }
- }
- else if
- (
- feMesh.getEdgeStatus(edgeI)
- == extendedFeatureEdgeMesh::INTERNAL
- )
- {
- // Concave Point
- Foam::point2D externalPt =
- featPoint + meshControls().ppDist()*cornerNormal;
-
- Foam::point2D refPt =
- featPoint - meshControls().ppDist()*cornerNormal;
-
- label slavePointIndex = 0;
-
- scalar totalAngle =
- radToDeg
- (
- constant::mathematical::pi
- + acos(mag(fpn[0] & fpn[1]))
- );
-
- // Number of quadrants the angle should be split into
- int nQuads =
- int(totalAngle/meshControls().maxQuadAngle()) + 1;
-
- // The number of additional master points needed to
- //obtain the required number of quadrants.
- int nAddPoints = min(max(nQuads - 2, 0), 2);
-
- // index of reflMaster
- label reflectedMaster = nVert + 2 + nAddPoints;
-
- if (debug)
- {
- Info<< "Concave Point: " << featPoint << nl
- << " corner norm: " << cornerNormal << nl
- << " external: " << externalPt << nl
- << " reference: " << refPt << nl
- << " angle: " << totalAngle << nl
- << " nQuads: " << nQuads << nl
- << " nAddPoints: " << nAddPoints << endl;
- }
-
- forAll(fpn, nI)
- {
- const vector n3D(fpn[nI][0], fpn[nI][1], 0.0);
-
- plane planeN = plane(toPoint3D(featPoint), n3D);
-
- Foam::point2D internalPt =
- externalPt
- - (
- 2.0
- * planeN.distance(toPoint3D(externalPt))
- * fpn[nI]
- );
-
- featurePoints_.push_back
- (
- Vb
- (
- toPoint(internalPt),
- nVert,
- reflectedMaster
- )
- );
- slavePointIndex = nVert++;
-
- if (debug)
- {
- Info<< "Internal Point: " << internalPt << endl;
- }
- }
-
- if (nAddPoints == 1)
- {
- // One additional point is the reflection of the slave
- // point, i.e., the original reference point
- featurePoints_.push_back
- (
- Vb
- (
- toPoint(refPt),
- nVert++,
- reflectedMaster
- )
- );
-
- if (debug)
- {
- Info<< "ref Point: " << refPt << endl;
- }
- }
- else if (nAddPoints == 2)
- {
- point2D reflectedAa =
- refPt - ((featPoint - externalPt) & fpn[1])*fpn[1];
-
- featurePoints_.push_back
- (
- Vb
- (
- toPoint(reflectedAa),
- nVert++,
- reflectedMaster
- )
- );
-
- point2D reflectedBb =
- refPt - ((featPoint - externalPt) & fpn[0])*fpn[0];
-
- featurePoints_.push_back
- (
- Vb
- (
- toPoint(reflectedBb),
- nVert++,
- reflectedMaster
- )
- );
-
- if (debug)
- {
- Info<< "refA Point: " << reflectedAa << nl
- << "refb Point: " << reflectedBb << endl;
- }
- }
-
- featurePoints_.push_back
- (
- Vb
- (
- toPoint(externalPt),
- nVert++,
- slavePointIndex
- )
- );
- }
- else
- {
- WarningIn("void Foam::CV2D::insertFeaturePoints()")
- << "Feature Edge " << edges[edgeI] << nl
- << " points(" << points[edges[edgeI].start()]
- << ", " << points[edges[edgeI].end()] << ")" << nl
- << " is not labelled as either concave or convex, it"
- << " is labelled as (#2 = flat): "
- << feMesh.getEdgeStatus(edgeI) << endl;
- }
- }
- else
- {
- WarningIn("void Foam::CV2D::insertFeaturePoints()")
- << "Point " << featPoint << " is not on the line "
- << line << endl;
- }
- }
- }
-
- // Insert the feature points.
- reinsertFeaturePoints();
-
- if (meshControls().objOutput())
- {
- writePoints("feat_allPoints.obj", false);
- writeFaces("feat_allFaces.obj", false);
- writeFaces("feat_faces.obj", true);
- writeTriangles("feat_triangles.obj", true);
- }
-}
-
-
-void Foam::CV2D::reinsertFeaturePoints()
-{
- for
- (
- std::list<Vb>::iterator vit=featurePoints_.begin();
- vit != featurePoints_.end();
- ++vit
- )
- {
- insertPoint
- (
- toPoint2D(vit->point()),
- vit->index(),
- vit->type()
- );
- }
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/insertSurfaceNearPointPairs.C b/applications/utilities/mesh/generation/cv2DMesh/insertSurfaceNearPointPairs.C
deleted file mode 100644
index 700041f814189bae85c38bc9496b9139bdb4a71c..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/insertSurfaceNearPointPairs.C
+++ /dev/null
@@ -1,114 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*----------------------------------------------------------------------------*/
-
-#include "CV2D.H"
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-void Foam::CV2D::insertSurfaceNearPointPairs()
-{
- Info<< "insertSurfaceNearPointPairs: ";
-
- label nNearPoints = 0;
-
- for
- (
- Triangulation::Finite_edges_iterator eit = finite_edges_begin();
- eit != finite_edges_end();
- eit++
- )
- {
- Vertex_handle v0h = eit->first->vertex(cw(eit->second));
- Vertex_handle v1h = eit->first->vertex(ccw(eit->second));
-
- if (v0h->ppMaster() && v1h->ppMaster())
- {
- point2DFromPoint v0(toPoint2D(v0h->point()));
- point2DFromPoint v1(toPoint2D(v1h->point()));
-
- // Check that the two triangle vertices are further apart than the
- // minimum cell size
- if (magSqr(v1 - v0) > meshControls().minCellSize2())
- {
- point2D e0(toPoint2D(circumcenter(eit->first)));
-
- point2D e1
- (
- toPoint2D(circumcenter(eit->first->neighbor(eit->second)))
- );
-
- // Calculate the length^2 of the edge normal to the surface
- scalar edgeLen2 = magSqr(e0 - e1);
-
- if (edgeLen2 < meshControls().minNearPointDist2())
- {
- pointIndexHit pHit;
- label hitSurface = -1;
-
- qSurf_.findSurfaceNearest
- (
- toPoint3D(e0),
- meshControls().minEdgeLen2(),
- pHit,
- hitSurface
- );
-
- if (pHit.hit())
- {
- vectorField norm(1);
- qSurf_.geometry()[hitSurface].getNormal
- (
- List<pointIndexHit>(1, pHit),
- norm
- );
-
- insertPointPair
- (
- meshControls().ppDist(),
- toPoint2D(pHit.hitPoint()),
- toPoint2D(norm[0])
- );
-
- nNearPoints++;
-
- // Correct the edge iterator for the change in the
- // number of edges following the point-pair insertion
- eit = Finite_edges_iterator
- (
- finite_edges_end().base(),
- eit.predicate(),
- eit.base()
- );
- }
- }
- }
- }
- }
-
- Info<< nNearPoints << " point-pairs inserted" << endl;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/insertSurfaceNearestPointPairs.C b/applications/utilities/mesh/generation/cv2DMesh/insertSurfaceNearestPointPairs.C
deleted file mode 100644
index 49249241e77adac8ccce8b8853f1a40b8f92719c..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/insertSurfaceNearestPointPairs.C
+++ /dev/null
@@ -1,244 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*----------------------------------------------------------------------------*/
-
-#include "CV2D.H"
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-bool Foam::CV2D::dualCellSurfaceIntersection
-(
- const Triangulation::Finite_vertices_iterator& vit
-) const
-{
- Triangulation::Edge_circulator ecStart = incident_edges(vit);
- Triangulation::Edge_circulator ec = ecStart;
-
- do
- {
- if (!is_infinite(ec))
- {
- point e0 = toPoint3D(circumcenter(ec->first));
-
- // If edge end is outside bounding box then edge cuts boundary
- if (!qSurf_.globalBounds().contains(e0))
- {
- return true;
- }
-
- point e1 = toPoint3D(circumcenter(ec->first->neighbor(ec->second)));
-
- // If other edge end is ouside bounding box then edge cuts boundary
- if (!qSurf_.globalBounds().contains(e1))
- {
- return true;
- }
-
- if (magSqr(e1 - e0) > meshControls().minEdgeLen2())
- {
- if (qSurf_.findSurfaceAnyIntersection(e0, e1))
- {
- return true;
- }
- }
- }
-
- } while (++ec != ecStart);
-
- return false;
-}
-
-
-void Foam::CV2D::insertPointPairs
-(
- const DynamicList<point2D>& nearSurfacePoints,
- const DynamicList<point2D>& surfacePoints,
- const DynamicList<label>& surfaceTris,
- const DynamicList<label>& surfaceHits,
- const fileName fName
-)
-{
- if (meshControls().mirrorPoints())
- {
- forAll(surfacePoints, ppi)
- {
- insertMirrorPoint
- (
- nearSurfacePoints[ppi],
- surfacePoints[ppi]
- );
- }
- }
- else
- {
- forAll(surfacePoints, ppi)
- {
- pointIndexHit pHit
- (
- true,
- toPoint3D(surfacePoints[ppi]),
- surfaceTris[ppi]
- );
-
- vectorField norm(1);
- qSurf_.geometry()[surfaceHits[ppi]].getNormal
- (
- List<pointIndexHit>(1, pHit),
- norm
- );
-
- insertPointPair
- (
- meshControls().ppDist(),
- surfacePoints[ppi],
- toPoint2D(norm[0])
- );
- }
- }
-
- Info<< surfacePoints.size() << " point-pairs inserted" << endl;
-
- if (meshControls().objOutput())
- {
- OFstream str(fName);
- label vertI = 0;
-
- forAll(surfacePoints, ppi)
- {
- meshTools::writeOBJ(str, toPoint3D(surfacePoints[ppi]));
- vertI++;
- }
-
- Info<< "insertPointPairs: Written " << surfacePoints.size()
- << " inserted point-pair locations to file "
- << str.name() << endl;
- }
-}
-
-
-void Foam::CV2D::insertSurfaceNearestPointPairs()
-{
- Info<< "insertSurfaceNearestPointPairs: ";
-
- label nSurfacePointsEst =
- min
- (
- number_of_vertices(),
- size_t(10*sqrt(scalar(number_of_vertices())))
- );
-
- DynamicList<point2D> nearSurfacePoints(nSurfacePointsEst);
- DynamicList<point2D> surfacePoints(nSurfacePointsEst);
- DynamicList<label> surfaceTris(nSurfacePointsEst);
- DynamicList<label> surfaceHits(nSurfacePointsEst);
-
- // Local references to surface mesh addressing
-// const pointField& localPoints = qSurf_.localPoints();
-// const labelListList& edgeFaces = qSurf_.edgeFaces();
-// const vectorField& faceNormals = qSurf_.faceNormals();
-// const labelListList& faceEdges = qSurf_.faceEdges();
-
- for
- (
- Triangulation::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- vit++
- )
- {
- if (vit->internalPoint())
- {
- point2DFromPoint vert(toPoint2D(vit->point()));
-
- pointIndexHit pHit;
- label hitSurface = -1;
-
- qSurf_.findSurfaceNearest
- (
- toPoint3D(vert),
- 4*meshControls().minCellSize2(),
- pHit,
- hitSurface
- );
-
- if (pHit.hit())
- {
- vit->setNearBoundary();
-
- // Reference to the nearest triangle
-// const labelledTri& f = qSurf_[hitSurface];
-
-// // Find where point is on triangle.
-// // Note tolerance needed is relative one
-// // (used in comparing normalized [0..1] triangle coordinates).
-// label nearType, nearLabel;
-// triPointRef
-// (
-// localPoints[f[0]],
-// localPoints[f[1]],
-// localPoints[f[2]]
-// ).classify(pHit.hitPoint(), nearType, nearLabel);
-
-// // If point is on a edge check if it is an internal feature
-
-// bool internalFeatureEdge = false;
-
-// if (nearType == triPointRef::EDGE)
-// {
-// label edgeI = faceEdges[hitSurface][nearLabel];
-// const labelList& eFaces = edgeFaces[edgeI];
-
-// if
-// (
-// eFaces.size() == 2
-// && (faceNormals[eFaces[0]] & faceNormals[eFaces[1]])
-// < -0.2
-// )
-// {
-// internalFeatureEdge = true;
-// }
-// }
-
- if (dualCellSurfaceIntersection(vit)) //&& !internalFeatureEdge)
- {
- nearSurfacePoints.append(vert);
- surfacePoints.append(toPoint2D(pHit.hitPoint()));
- surfaceTris.append(pHit.index());
- surfaceHits.append(hitSurface);
- }
- }
- }
- }
-
- insertPointPairs
- (
- nearSurfacePoints,
- surfacePoints,
- surfaceTris,
- surfaceHits,
- "surfaceNearestIntersections.obj"
- );
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/shortEdgeFilter2D.C b/applications/utilities/mesh/generation/cv2DMesh/shortEdgeFilter2D.C
deleted file mode 100644
index b125351314b205acd0ee6e1406954230af58d917..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/shortEdgeFilter2D.C
+++ /dev/null
@@ -1,533 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms_ of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "shortEdgeFilter2D.H"
-
-namespace Foam
-{
- defineTypeNameAndDebug(shortEdgeFilter2D, 0);
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::shortEdgeFilter2D::shortEdgeFilter2D
-(
- const Foam::CV2D& cv2Dmesh,
- const dictionary& dict
-)
-:
- cv2Dmesh_(cv2Dmesh),
- shortEdgeFilterFactor_(readScalar(dict.lookup("shortEdgeFilterFactor"))),
- edgeAttachedToBoundaryFactor_
- (
- dict.lookupOrDefault<scalar>("edgeAttachedToBoundaryFactor", 2.0)
- ),
- patchNames_(wordList()),
- patchSizes_(labelList()),
- mapEdgesRegion_(),
- indirectPatchEdge_()
-{
- point2DField points2D;
- faceList faces;
-
- cv2Dmesh.calcDual
- (
- points2D,
- faces,
- patchNames_,
- patchSizes_,
- mapEdgesRegion_,
- indirectPatchEdge_
- );
-
- pointField points(points2D.size());
- forAll(points, ip)
- {
- points[ip] = cv2Dmesh.toPoint3D(points2D[ip]);
- }
-
- if (debug)
- {
- OFstream str("indirectPatchEdges.obj");
- label count = 0;
-
- Info<< "Writing indirectPatchEdges to " << str.name() << endl;
-
- forAllConstIter(EdgeMap<label>, indirectPatchEdge_, iter)
- {
- const edge& e = iter.key();
-
- meshTools::writeOBJ
- (
- str,
- points[e.start()],
- points[e.end()],
- count
- );
- }
- }
-
- points2D.clear();
-
- ms_ = MeshedSurface<face>(xferMove(points), xferMove(faces));
-
- Info<< "Meshed surface stats before edge filtering :" << endl;
- ms_.writeStats(Info);
-
- if (debug)
- {
- writeInfo(Info);
-
- ms_.write("MeshedSurface_preFilter.obj");
- }
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::shortEdgeFilter2D::~shortEdgeFilter2D()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-void
-Foam::shortEdgeFilter2D::filter()
-{
- // These are global indices.
- const pointField& points = ms_.points();
- const edgeList& edges = ms_.edges();
- const faceList& faces = ms_.faces();
- const labelList& meshPoints = ms_.meshPoints();
- const labelList& boundaryPoints = ms_.boundaryPoints();
-
- label maxChain = 0;
- label nPointsToRemove = 0;
-
- labelList pointsToRemove(ms_.points().size(), -1);
-
- // List of number of vertices in a face.
- labelList newFaceVertexCount(faces.size(), -1);
- forAll(faces, faceI)
- {
- newFaceVertexCount[faceI] = faces[faceI].size();
- }
-
- // Check if the point is a boundary point. Flag if it is so that
- // it will not be deleted.
- boolList boundaryPointFlags(points.size(), false);
- // This has been removed, otherwise small edges on the boundary are not
- // removed.
- /* forAll(boundaryPointFlags, pointI)
- {
- forAll(boundaryPoints, bPoint)
- {
- if (meshPoints[boundaryPoints[bPoint]] == pointI)
- {
- boundaryPointFlags[pointI] = true;
- }
- }
- }*/
-
- // Check if an edge has a boundary point. It it does the edge length
- // will be doubled when working out its length.
- Info<< " Marking edges attached to boundaries." << endl;
- boolList edgeAttachedToBoundary(edges.size(), false);
- forAll(edges, edgeI)
- {
- const edge& e = edges[edgeI];
- const label startVertex = e.start();
- const label endVertex = e.end();
-
- forAll(boundaryPoints, bPoint)
- {
- if
- (
- boundaryPoints[bPoint] == startVertex
- || boundaryPoints[bPoint] == endVertex
- )
- {
- edgeAttachedToBoundary[edgeI] = true;
- }
- }
- }
-
- forAll(edges, edgeI)
- {
- const edge& e = edges[edgeI];
-
- // get the vertices of that edge.
- const label startVertex = e.start();
- const label endVertex = e.end();
-
- scalar edgeLength =
- mag
- (
- points[meshPoints[startVertex]]
- - points[meshPoints[endVertex]]
- );
-
- if (edgeAttachedToBoundary[edgeI])
- {
- edgeLength *= edgeAttachedToBoundaryFactor_;
- }
-
- scalar shortEdgeFilterValue = 0.0;
-
- const labelList& psEdges = ms_.pointEdges()[startVertex];
- const labelList& peEdges = ms_.pointEdges()[endVertex];
-
- forAll(psEdges, psEdgeI)
- {
- const edge& psE = edges[psEdges[psEdgeI]];
- if (edgeI != psEdges[psEdgeI])
- {
- shortEdgeFilterValue +=
- mag
- (
- points[meshPoints[psE.start()]]
- - points[meshPoints[psE.end()]]
- );
- }
- }
-
- forAll(peEdges, peEdgeI)
- {
- const edge& peE = edges[peEdges[peEdgeI]];
- if (edgeI != peEdges[peEdgeI])
- {
- shortEdgeFilterValue +=
- mag
- (
- points[meshPoints[peE.start()]]
- - points[meshPoints[peE.end()]]
- );
- }
- }
-
- shortEdgeFilterValue *=
- shortEdgeFilterFactor_
- /(psEdges.size() + peEdges.size() - 2);
-
-
- edge lookupInPatchEdge
- (
- meshPoints[startVertex],
- meshPoints[endVertex]
- );
-
- if
- (
- edgeLength < shortEdgeFilterValue
- || indirectPatchEdge_.found(lookupInPatchEdge)
- )
- {
- bool flagDegenerateFace = false;
- const labelList& pFaces = ms_.pointFaces()[startVertex];
-
- forAll(pFaces, pFaceI)
- {
- const face& f = ms_.localFaces()[pFaces[pFaceI]];
- forAll(f, fp)
- {
- // If the edge is part of this face...
- if (f[fp] == endVertex)
- {
- // If deleting vertex would create a triangle, don't!
- if (newFaceVertexCount[pFaces[pFaceI]] < 4)
- {
- flagDegenerateFace = true;
- }
- else
- {
- newFaceVertexCount[pFaces[pFaceI]]--;
- }
- }
- // If the edge is not part of this face...
- else
- {
- // Deleting vertex of a triangle...
- if (newFaceVertexCount[pFaces[pFaceI]] < 3)
- {
- flagDegenerateFace = true;
- }
- }
- }
- }
-
- // This if statement determines whether a point should be deleted.
- if
- (
- pointsToRemove[meshPoints[startVertex]] == -1
- && pointsToRemove[meshPoints[endVertex]] == -1
- && !boundaryPointFlags[meshPoints[startVertex]]
- && !flagDegenerateFace
- )
- {
- pointsToRemove[meshPoints[startVertex]] = meshPoints[endVertex];
- ++nPointsToRemove;
- }
- }
- }
-
- label totalNewPoints = points.size() - nPointsToRemove;
-
- pointField newPoints(totalNewPoints, vector::zero);
- labelList newPointNumbers(points.size(), -1);
- label numberRemoved = 0;
-
- forAll(points, pointI)
- {
- // If the point is NOT going to be removed.
- if (pointsToRemove[pointI] == -1)
- {
- newPoints[pointI - numberRemoved] = points[pointI];
- newPointNumbers[pointI] = pointI - numberRemoved;
- }
- else
- {
- numberRemoved++;
- }
- }
-
- // Need a new faceList
- faceList newFaces(faces.size());
- label newFaceI = 0;
-
- labelList newFace;
- label newFaceSize = 0;
-
- // Now need to iterate over the faces and remove points. Global index.
- forAll(faces, faceI)
- {
- const face& f = faces[faceI];
-
- newFace.clear();
- newFace.setSize(f.size());
- newFaceSize = 0;
-
- forAll(f, fp)
- {
- label pointI = f[fp];
- // If not removing the point, then add it to the new face.
- if (pointsToRemove[pointI] == -1)
- {
- newFace[newFaceSize++] = newPointNumbers[pointI];
- }
- else
- {
- label newPointI = pointsToRemove[pointI];
- // Replace deleted point with point that it is being
- // collapsed to.
- if
- (
- f.nextLabel(fp) != newPointI
- && f.prevLabel(fp) != newPointI
- )
- {
- label pChain = newPointI;
- label totalChain = 0;
- for (label nChain = 0; nChain <= totalChain; ++nChain)
- {
- if (newPointNumbers[pChain] != -1)
- {
- newFace[newFaceSize++] = newPointNumbers[pChain];
- newPointNumbers[pointI] = newPointNumbers[pChain];
- maxChain = max(totalChain, maxChain);
- }
- else
- {
- WarningIn("shortEdgeFilter")
- << "Point " << pChain
- << " marked for deletion as well as point "
- << pointI << nl
- << " Incrementing maxChain by 1 from "
- << totalChain << " to " << totalChain + 1
- << endl;
- totalChain++;
- }
- pChain = pointsToRemove[pChain];
- }
- }
- else
- {
- if (newPointNumbers[newPointI] != -1)
- {
- newPointNumbers[pointI] = newPointNumbers[newPointI];
- }
- }
- }
- }
-
- newFace.setSize(newFaceSize);
-
- if (newFace.size() > 2)
- {
- newFaces[newFaceI++] = face(newFace);
- }
- else
- {
- FatalErrorIn("shortEdgeFilter")
- << "Only " << newFace.size() << " in face " << faceI
- << exit(FatalError);
- }
- }
-
- newFaces.setSize(newFaceI);
-
- MeshedSurface<face> fMesh
- (
- xferMove(newPoints),
- xferMove(newFaces),
- xferCopy(List<surfZone>())
- );
-
- const Map<int>& fMeshPointMap = fMesh.meshPointMap();
-
- // Reset patchSizes_
- patchSizes_.clear();
- patchSizes_.setSize(patchNames_.size(), 0);
-
- label equalEdges = 0;
- label notFound = 0;
- label matches = 0;
- label negativeLabels = 0;
-
- forAll(newPointNumbers, pointI)
- {
- if (newPointNumbers[pointI] == -1)
- {
- WarningIn("shortEdgeFilter")
- << pointI << " will be deleted and " << newPointNumbers[pointI]
- << ", so it will not be replaced. "
- << "This will cause edges to be deleted." << endl;
- }
- }
-
- // Create new EdgeMap.
- Info<< "Creating new EdgeMap." << endl;
- EdgeMap<label> newMapEdgesRegion(mapEdgesRegion_.size());
-
- for
- (
- label bEdgeI = ms_.nInternalEdges();
- bEdgeI < edges.size();
- ++bEdgeI
- )
- {
- label p1 = meshPoints[edges[bEdgeI][0]];
- label p2 = meshPoints[edges[bEdgeI][1]];
-
- edge e(p1, p2);
-
- if (mapEdgesRegion_.found(e))
- {
- if
- (
- newPointNumbers[p1] != -1
- && newPointNumbers[p2] != -1
- )
- {
- if (newPointNumbers[p1] != newPointNumbers[p2])
- {
- label region = mapEdgesRegion_.find(e)();
- newMapEdgesRegion.insert
- (
- edge
- (
- fMeshPointMap[newPointNumbers[p1]],
- fMeshPointMap[newPointNumbers[p2]]
- ),
- region
- );
- patchSizes_[region]++;
- matches++;
- }
- else
- {
- equalEdges++;
- }
- }
- else
- {
- negativeLabels++;
- }
- }
- else
- {
- notFound++;
- }
- }
-
- if (debug)
- {
- Info<< "EdgeMapping :" << nl
- << " Matches : " << matches << nl
- << " Equal : " << equalEdges << nl
- << " Negative : " << negativeLabels << nl
- << " Not Found: " << notFound << endl;
- }
-
- mapEdgesRegion_.transfer(newMapEdgesRegion);
-
- ms_.transfer(fMesh);
-
- Info<< " Maximum number of chained collapses = " << maxChain << endl;
-
- if (debug)
- {
- writeInfo(Info);
- }
-}
-
-
-void Foam::shortEdgeFilter2D::writeInfo(Ostream& os)
-{
- os << "Short Edge Filtering Information:" << nl
- << " shortEdgeFilterFactor: " << shortEdgeFilterFactor_ << nl
- << " edgeAttachedToBoundaryFactor: " << edgeAttachedToBoundaryFactor_
- << endl;
-
- forAll(patchNames_, patchI)
- {
- os << " Patch " << patchNames_[patchI]
- << ", size " << patchSizes_[patchI] << endl;
- }
-
- os << " There are " << mapEdgesRegion_.size()
- << " boundary edges." << endl;
-
- os << " Mesh Info:" << nl
- << " Points: " << ms_.nPoints() << nl
- << " Faces: " << ms_.size() << nl
- << " Edges: " << ms_.nEdges() << nl
- << " Internal: " << ms_.nInternalEdges() << nl
- << " External: " << ms_.nEdges() - ms_.nInternalEdges()
- << endl;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cv2DMesh/shortEdgeFilter2D.H b/applications/utilities/mesh/generation/cv2DMesh/shortEdgeFilter2D.H
deleted file mode 100644
index 53b248fc3d4bf542676f3a1f64d9cc5db9f3664a..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cv2DMesh/shortEdgeFilter2D.H
+++ /dev/null
@@ -1,133 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::shortEdgeFilter2D
-
-Description
- This class filters short edges generated by the CV2D mesher.
-
-SourceFiles
- shortEdgeFilter2D.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef shortEdgeFilter2D_H
-#define shortEdgeFilter2D_H
-
-#include "MeshedSurfaces.H"
-#include "CV2D.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class shortEdgeFilter2D Declaration
-\*---------------------------------------------------------------------------*/
-
-class shortEdgeFilter2D
-{
- // Private data
-
- const CV2D& cv2Dmesh_;
-
- MeshedSurface<face> ms_;
-
- const scalar shortEdgeFilterFactor_;
-
- const scalar edgeAttachedToBoundaryFactor_;
-
- wordList patchNames_;
-
- labelList patchSizes_;
-
- EdgeMap<label> mapEdgesRegion_;
-
- EdgeMap<label> indirectPatchEdge_;
-
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- shortEdgeFilter2D(const shortEdgeFilter2D&);
-
- //- Disallow default bitwise assignment
- void operator=(const shortEdgeFilter2D&);
-
-
-public:
-
- //- Runtime type information
- ClassName("shortEdgeFilter2D");
-
- // Constructors
-
- shortEdgeFilter2D(const CV2D& cv2Dmesh, const dictionary& dict);
-
-
- //- Destructor
- ~shortEdgeFilter2D();
-
-
- // Access Functions
-
- const wordList& patchNames() const
- {
- return patchNames_;
- }
-
- const labelList& patchSizes() const
- {
- return patchSizes_;
- }
-
- const EdgeMap<label>& mapEdgesRegion() const
- {
- return mapEdgesRegion_;
- }
-
- const MeshedSurface<face>& fMesh() const
- {
- return ms_;
- }
-
-
- // Member Functions
-
- void filter();
-
- void writeInfo(Ostream& os);
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/Allwclean b/applications/utilities/mesh/generation/cvMesh/Allwclean
deleted file mode 100755
index 3eff84006aa70bbe0d2c8b60b9408274c47bad7d..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/Allwclean
+++ /dev/null
@@ -1,10 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-set -x
-
-wclean libso conformalVoronoiMesh
-wclean
-wclean cvMeshSurfaceSimplify
-wclean cvMeshBackgroundMesh
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/applications/utilities/mesh/generation/cvMesh/Allwmake b/applications/utilities/mesh/generation/cvMesh/Allwmake
deleted file mode 100755
index d88e8cee4afe888e82031a710e39bd9db82a578d..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/Allwmake
+++ /dev/null
@@ -1,11 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-set -x
-
-wmake libso conformalVoronoiMesh
-wmake
-#wmake cvMeshBackgroundMesh
-(cd cvMeshSurfaceSimplify && ./Allwmake)
-wmake cellSizeAndAlignmentGrid
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/applications/utilities/mesh/generation/cvMesh/Make/files b/applications/utilities/mesh/generation/cvMesh/Make/files
deleted file mode 100644
index 425e0f5b83e2d83a58cef72bfc78a1503f18ad69..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/Make/files
+++ /dev/null
@@ -1,3 +0,0 @@
-cvMesh.C
-
-EXE = $(FOAM_APPBIN)/cvMesh
diff --git a/applications/utilities/mesh/generation/cvMesh/Make/options b/applications/utilities/mesh/generation/cvMesh/Make/options
deleted file mode 100644
index 9461fa3725d8b76cc7cdce5cc102b5aa1933bdbf..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/Make/options
+++ /dev/null
@@ -1,38 +0,0 @@
-EXE_DEBUG = -DFULLDEBUG -g -O0
-EXE_FROUNDING_MATH = -frounding-math
-EXE_NDEBUG = -DNDEBUG
-
-CGAL_EXACT = /*-DCGAL_DONT_USE_LAZY_KERNEL*/
-CGAL_INEXACT = -DCGAL_INEXACT
-
-include $(GENERAL_RULES)/CGAL
-
-EXE_INC = \
- ${EXE_FROUNDING_MATH} \
- ${EXE_NDEBUG} \
- ${CGAL_INEXACT} \
- ${CGAL_INC} \
- -IconformalVoronoiMesh/lnInclude \
- -I$(LIB_SRC)/finiteVolume/lnInclude \
- -I$(LIB_SRC)/meshTools/lnInclude \
- -I$(LIB_SRC)/parallel/decompose/decompositionMethods/lnInclude \
- -I$(LIB_SRC)/edgeMesh/lnInclude \
- -I$(LIB_SRC)/fileFormats/lnInclude \
- -I$(LIB_SRC)/dynamicMesh/lnInclude \
- -I$(LIB_SRC)/triSurface/lnInclude \
- -I$(LIB_SRC)/sampling/lnInclude \
- -IvectorTools
-
-EXE_LIBS = \
- $(CGAL_LIBS) \
- -lboost_thread \
- -lmpfr \
- -lconformalVoronoiMesh \
- -lmeshTools \
- -ldecompositionMethods \
- -L$(FOAM_LIBBIN)/dummy -lptscotchDecomp \
- -ledgeMesh \
- -lfileFormats \
- -ltriSurface \
- -ldynamicMesh \
- -lsampling
diff --git a/applications/utilities/mesh/generation/cvMesh/cellSizeAndAlignmentGrid/Make/files b/applications/utilities/mesh/generation/cvMesh/cellSizeAndAlignmentGrid/Make/files
deleted file mode 100644
index 83b77fdc77ee07fc46cfc37752b42d613bce8154..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cellSizeAndAlignmentGrid/Make/files
+++ /dev/null
@@ -1,2 +0,0 @@
-cellSizeAndAlignmentGrid.C
-EXE = $(FOAM_USER_APPBIN)/cellSizeAndAlignmentGrid
diff --git a/applications/utilities/mesh/generation/cvMesh/cellSizeAndAlignmentGrid/Make/options b/applications/utilities/mesh/generation/cvMesh/cellSizeAndAlignmentGrid/Make/options
deleted file mode 100644
index 31d0d80858fad570a1809d938b72a86a074ab71b..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cellSizeAndAlignmentGrid/Make/options
+++ /dev/null
@@ -1,40 +0,0 @@
-EXE_DEBUG = -DFULLDEBUG -g -O0
-EXE_FROUNDING_MATH = -frounding-math
-EXE_NDEBUG = -DNDEBUG
-
-CGAL_EXACT = /*-DCGAL_DONT_USE_LAZY_KERNEL*/
-CGAL_INEXACT = -DCGAL_INEXACT
-
-include $(GENERAL_RULES)/CGAL
-
-
-EXE_INC = \
- ${EXE_FROUNDING_MATH} \
- ${EXE_NDEBUG} \
- ${CGAL_INEXACT} \
- ${CGAL_INC} \
- -I$(LIB_SRC)/finiteVolume/lnInclude \
- -I$(LIB_SRC)/dynamicMesh/lnInclude \
- -I$(LIB_SRC)/triSurface/lnInclude \
- -I$(LIB_SRC)/fileFormats/lnInclude \
- -I$(LIB_SRC)/sampling/lnInclude \
- -I$(LIB_SRC)/meshTools/lnInclude \
- -I$(LIB_SRC)/parallel/decompose/decompositionMethods/lnInclude \
- -I$(LIB_SRC)/edgeMesh/lnInclude \
- -I$(HOME)/OpenFOAM/OpenFOAM-dev/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/lnInclude \
- -I$(HOME)/OpenFOAM/OpenFOAM-dev/applications/utilities/mesh/generation/cvMesh/vectorTools
-
-EXE_LIBS = \
- $(CGAL_LIBS) \
- -lmpfr \
- -lboost_thread \
- -lconformalVoronoiMesh \
- -lfiniteVolume \
- -lmeshTools \
- -ldecompositionMethods \
- -L$(FOAM_LIBBIN)/dummy -lptscotchDecomp \
- -ledgeMesh \
- -ltriSurface \
- -ldynamicMesh \
- -lsampling \
- -lfileFormats
diff --git a/applications/utilities/mesh/generation/cvMesh/cellSizeAndAlignmentGrid/cellSizeAndAlignmentGrid.C b/applications/utilities/mesh/generation/cvMesh/cellSizeAndAlignmentGrid/cellSizeAndAlignmentGrid.C
deleted file mode 100644
index 454416299d2d2539171dbd73023db41d4cf00cc2..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cellSizeAndAlignmentGrid/cellSizeAndAlignmentGrid.C
+++ /dev/null
@@ -1,716 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Application
- Test-distributedDelaunayMesh
-
-Description
-
-\*---------------------------------------------------------------------------*/
-
-#include "CGALTriangulation3DKernel.H"
-
-#include "indexedVertex.H"
-#include "indexedCell.H"
-
-#include "argList.H"
-#include "Time.H"
-#include "DistributedDelaunayMesh.H"
-#include "backgroundMeshDecomposition.H"
-#include "searchableSurfaces.H"
-#include "conformationSurfaces.H"
-#include "PrintTable.H"
-#include "Random.H"
-#include "boundBox.H"
-#include "point.H"
-#include "cellShapeControlMesh.H"
-#include "triadField.H"
-#include "scalarIOField.H"
-#include "pointIOField.H"
-#include "triadIOField.H"
-
-using namespace Foam;
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-// Main program:
-
-template <class Triangulation, class Type>
-Foam::tmp<Foam::Field<Type> > filterFarPoints
-(
- const Triangulation& mesh,
- const Field<Type>& field
-)
-{
- tmp<Field<Type> > tNewField(new Field<Type>(field.size()));
- Field<Type>& newField = tNewField();
-
- label added = 0;
- label count = 0;
-
- for
- (
- typename Triangulation::Finite_vertices_iterator vit =
- mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (vit->real())
- {
- newField[added++] = field[count];
- }
-
- count++;
- }
-
- newField.resize(added);
-
- return tNewField;
-}
-
-
-template <class T>
-autoPtr<mapDistribute> buildMap
-(
- const T& mesh,
- labelListList& pointPoints
-)
-{
- pointPoints.setSize(mesh.vertexCount());
-
- globalIndex globalIndexing(mesh.vertexCount());
-
- for
- (
- typename T::Finite_vertices_iterator vit = mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (!vit->real())
- {
- continue;
- }
-
- std::list<typename T::Vertex_handle> adjVerts;
- mesh.finite_adjacent_vertices(vit, std::back_inserter(adjVerts));
-
- DynamicList<label> indices(adjVerts.size());
-
- for
- (
- typename std::list<typename T::Vertex_handle>::const_iterator
- adjVertI = adjVerts.begin();
- adjVertI != adjVerts.end();
- ++adjVertI
- )
- {
- typename T::Vertex_handle vh = *adjVertI;
-
- if (!vh->farPoint())
- {
- indices.append
- (
- globalIndexing.toGlobal(vh->procIndex(), vh->index())
- );
- }
- }
-
- pointPoints[vit->index()].transfer(indices);
- }
-
- List<Map<label> > compactMap;
-
- return autoPtr<mapDistribute>
- (
- new mapDistribute
- (
- globalIndexing,
- pointPoints,
- compactMap
- )
- );
-}
-
-
-template <class T>
-Foam::tmp<Foam::triadField> buildAlignmentField(const T& mesh)
-{
- tmp<triadField> tAlignments
- (
- new triadField(mesh.vertexCount(), triad::unset)
- );
- triadField& alignments = tAlignments();
-
- for
- (
- typename T::Finite_vertices_iterator vit = mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (!vit->real())
- {
- continue;
- }
-
- alignments[vit->index()] = vit->alignment();
- }
-
- return tAlignments;
-}
-
-
-template <class T>
-Foam::tmp<Foam::pointField> buildPointField(const T& mesh)
-{
- tmp<pointField> tPoints
- (
- new pointField(mesh.vertexCount(), point(GREAT, GREAT, GREAT))
- );
- pointField& points = tPoints();
-
- for
- (
- typename T::Finite_vertices_iterator vit = mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (!vit->real())
- {
- continue;
- }
-
- points[vit->index()] = topoint(vit->point());
- }
-
- return tPoints;
-}
-
-
-void refine
-(
- cellShapeControlMesh& mesh,
- const conformationSurfaces& geometryToConformTo,
- const label maxRefinementIterations,
- const scalar defaultCellSize
-)
-{
- for (label iter = 0; iter < maxRefinementIterations; ++iter)
- {
- DynamicList<point> ptsToInsert;
-
- for
- (
- CellSizeDelaunay::Finite_cells_iterator cit =
- mesh.finite_cells_begin();
- cit != mesh.finite_cells_end();
- ++cit
- )
- {
- const point newPoint =
- topoint
- (
- CGAL::centroid
- (
- cit->vertex(0)->point(),
- cit->vertex(1)->point(),
- cit->vertex(2)->point(),
- cit->vertex(3)->point()
- )
- );
-
- if (geometryToConformTo.inside(newPoint))
- {
- ptsToInsert.append(newPoint);
- }
- }
-
- Info<< " Adding " << returnReduce(ptsToInsert.size(), sumOp<label>())
- << endl;
-
- forAll(ptsToInsert, ptI)
- {
- mesh.insert
- (
- ptsToInsert[ptI],
- defaultCellSize,
- triad::unset,
- Vb::vtInternal
- );
- }
- }
-}
-
-
-int main(int argc, char *argv[])
-{
- #include "setRootCase.H"
- #include "createTime.H"
-
- // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
- label maxRefinementIterations = 2;
- label maxSmoothingIterations = 200;
- scalar minResidual = 0;
- scalar defaultCellSize = 0.001;
- scalar nearFeatDistSqrCoeff = 1e-8;
-
-
- // Need to decouple vertex and cell type from this class?
- // Vertex must have:
- // + index
- // + procIndex
- // - type should be optional
- cellShapeControlMesh mesh(runTime);
-
- IOdictionary cvMeshDict
- (
- IOobject
- (
- "cvMeshDict",
- runTime.system(),
- runTime,
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- )
- );
-
- Random rndGen(64293*Pstream::myProcNo());
-
- searchableSurfaces allGeometry
- (
- IOobject
- (
- "cvSearchableSurfaces",
- runTime.constant(),
- "triSurface",
- runTime,
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- cvMeshDict.subDict("geometry")
- );
-
- conformationSurfaces geometryToConformTo
- (
- runTime,
- rndGen,
- allGeometry,
- cvMeshDict.subDict("surfaceConformation")
- );
-
- autoPtr<backgroundMeshDecomposition> bMesh;
- if (Pstream::parRun())
- {
- bMesh.set
- (
- new backgroundMeshDecomposition
- (
- runTime,
- rndGen,
- geometryToConformTo,
- cvMeshDict.subDict("backgroundMeshDecomposition")
- )
- );
- }
-
- // Nice to have IO for the delaunay mesh
- // IO depend on vertex type.
- //
- // Define a delaunay mesh as:
- // + list of points of the triangulation
- // + optionally a list of cells
-
- Info<< nl << "Loop over surfaces" << endl;
-
- forAll(geometryToConformTo.surfaces(), sI)
- {
- const label surfI = geometryToConformTo.surfaces()[sI];
-
- const searchableSurface& surface =
- geometryToConformTo.geometry()[surfI];
-
- Info<< nl << "Inserting points from surface " << surface.name()
- << " (" << surface.type() << ")" << endl;
-
- const tmp<pointField> tpoints(surface.points());
- const pointField& points = tpoints();
-
- Info<< " Number of points = " << points.size() << endl;
-
- forAll(points, pI)
- {
- // Is the point in the extendedFeatureEdgeMesh? If so get the
- // point normal, otherwise get the surface normal from
- // searchableSurface
-
- pointIndexHit info;
- label infoFeature;
- geometryToConformTo.findFeaturePointNearest
- (
- points[pI],
- nearFeatDistSqrCoeff,
- info,
- infoFeature
- );
-
-
- autoPtr<triad> pointAlignment;
-
- if (info.hit())
- {
- const extendedFeatureEdgeMesh& features =
- geometryToConformTo.features()[infoFeature];
-
- vectorField norms = features.featurePointNormals(info.index());
-
- // Create a triad from these norms.
- pointAlignment.set(new triad());
- forAll(norms, nI)
- {
- pointAlignment() += norms[nI];
- }
-
- pointAlignment().normalize();
- pointAlignment().orthogonalize();
- }
- else
- {
- geometryToConformTo.findEdgeNearest
- (
- points[pI],
- nearFeatDistSqrCoeff,
- info,
- infoFeature
- );
-
- if (info.hit())
- {
- const extendedFeatureEdgeMesh& features =
- geometryToConformTo.features()[infoFeature];
-
- vectorField norms = features.edgeNormals(info.index());
-
- // Create a triad from these norms.
- pointAlignment.set(new triad());
- forAll(norms, nI)
- {
- pointAlignment() += norms[nI];
- }
-
- pointAlignment().normalize();
- pointAlignment().orthogonalize();
- }
- else
- {
- pointField ptField(1, points[pI]);
- scalarField distField(1, nearFeatDistSqrCoeff);
- List<pointIndexHit> infoList(1, pointIndexHit());
-
- surface.findNearest(ptField, distField, infoList);
-
- vectorField normals(1);
- surface.getNormal(infoList, normals);
-
- pointAlignment.set(new triad(normals[0]));
- }
- }
-
- if (Pstream::parRun())
- {
- if (bMesh().positionOnThisProcessor(points[pI]))
- {
- CellSizeDelaunay::Vertex_handle vh = mesh.insert
- (
- points[pI],
- defaultCellSize,
- pointAlignment(),
- Vb::vtInternalNearBoundary
- );
- }
- }
- else
- {
- CellSizeDelaunay::Vertex_handle vh = mesh.insert
- (
- points[pI],
- defaultCellSize,
- pointAlignment(),
- Vb::vtInternalNearBoundary
- );
- }
- }
- }
-
-
- // Refine the mesh
- refine
- (
- mesh,
- geometryToConformTo,
- maxRefinementIterations,
- defaultCellSize
- );
-
-
- if (Pstream::parRun())
- {
- mesh.distribute(bMesh);
- }
-
-
- labelListList pointPoints;
- autoPtr<mapDistribute> meshDistributor = buildMap(mesh, pointPoints);
-
-
- triadField alignments(buildAlignmentField(mesh));
- pointField points(buildPointField(mesh));
-
- mesh.printInfo(Info);
-
-
- // Setup the sizes and alignments on each point
- triadField fixedAlignments(mesh.vertexCount(), triad::unset);
-
- for
- (
- CellSizeDelaunay::Finite_vertices_iterator vit =
- mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (vit->nearBoundary())
- {
- fixedAlignments[vit->index()] = vit->alignment();
- }
- }
-
- Info<< nl << "Smoothing alignments" << endl;
-
- for (label iter = 0; iter < maxSmoothingIterations; iter++)
- {
- Info<< "Iteration " << iter;
-
- meshDistributor().distribute(points);
- meshDistributor().distribute(alignments);
-
- scalar residual = 0;
-
- triadField triadAv(alignments.size(), triad::unset);
-
- forAll(pointPoints, pI)
- {
- const labelList& pPoints = pointPoints[pI];
-
- if (pPoints.empty())
- {
- continue;
- }
-
- const triad& oldTriad = alignments[pI];
- triad& newTriad = triadAv[pI];
-
- // Enforce the boundary conditions
- const triad& fixedAlignment = fixedAlignments[pI];
-
- forAll(pPoints, adjPointI)
- {
- const label adjPointIndex = pPoints[adjPointI];
-
- scalar dist = mag(points[pI] - points[adjPointIndex]);
-
-// dist = max(dist, SMALL);
-
- triad tmpTriad = alignments[adjPointIndex];
-
- for (direction dir = 0; dir < 3; dir++)
- {
- if (tmpTriad.set(dir))
- {
- tmpTriad[dir] *= (1.0/dist);
- }
- }
-
- newTriad += tmpTriad;
- }
-
- newTriad.normalize();
- newTriad.orthogonalize();
-// newTriad = newTriad.sortxyz();
-
- label nFixed = 0;
-
- forAll(fixedAlignment, dirI)
- {
- if (fixedAlignment.set(dirI))
- {
- nFixed++;
- }
- }
-
- if (nFixed == 1)
- {
- forAll(fixedAlignment, dirI)
- {
- if (fixedAlignment.set(dirI))
- {
- newTriad.align(fixedAlignment[dirI]);
- }
- }
- }
- else if (nFixed == 2)
- {
- forAll(fixedAlignment, dirI)
- {
- if (fixedAlignment.set(dirI))
- {
- newTriad[dirI] = fixedAlignment[dirI];
- }
- else
- {
- newTriad[dirI] = triad::unset[dirI];
- }
- }
-
- newTriad.orthogonalize();
- }
- else if (nFixed == 3)
- {
- forAll(fixedAlignment, dirI)
- {
- if (fixedAlignment.set(dirI))
- {
- newTriad[dirI] = fixedAlignment[dirI];
- }
- }
- }
-
- for (direction dir = 0; dir < 3; ++dir)
- {
- if
- (
- newTriad.set(dir)
- && oldTriad.set(dir)
- //&& !fixedAlignment.set(dir)
- )
- {
- scalar dotProd = (oldTriad[dir] & newTriad[dir]);
- scalar diff = mag(dotProd) - 1.0;
-
- residual += mag(diff);
- }
- }
- }
-
- forAll(alignments, pI)
- {
- alignments[pI] = triadAv[pI].sortxyz();
- }
-
- reduce(residual, sumOp<scalar>());
-
- Info<< ", Residual = " << residual << endl;
-
- if (residual <= minResidual)
- {
- break;
- }
- }
-
-
- // Write alignments to a .obj file
- OFstream str(runTime.path()/"alignments.obj");
-
- forAll(alignments, pI)
- {
- const triad& tri = alignments[pI];
-
- if (tri.set())
- {
- forAll(tri, dirI)
- {
- meshTools::writeOBJ(str, points[pI], tri[dirI] + points[pI]);
- }
- }
- }
-
-
- // Remove the far points
- pointIOField pointsIO
- (
- IOobject
- (
- "points",
- runTime.constant(),
- runTime,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- filterFarPoints(mesh, points)
- );
-
- scalarField sizes(points.size(), defaultCellSize);
- scalarIOField sizesIO
- (
- IOobject
- (
- "sizes",
- runTime.constant(),
- runTime,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- filterFarPoints(mesh, sizes)
- );
-
- triadIOField alignmentsIO
- (
- IOobject
- (
- "alignments",
- runTime.constant(),
- runTime,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- filterFarPoints(mesh, alignments)
- );
-
- pointsIO.write();
- sizesIO.write();
- alignmentsIO.write();
-
- Info<< nl << "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
- << " ClockTime = " << runTime.elapsedClockTime() << " s"
- << nl << endl;
-
- Info<< "\nEnd\n" << endl;
-
- return 0;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/checkCvMesh/meshQualityDict b/applications/utilities/mesh/generation/cvMesh/checkCvMesh/meshQualityDict
deleted file mode 100644
index fa5319e087c5e36fe7c3cd93d3a69d5ebc75463e..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/checkCvMesh/meshQualityDict
+++ /dev/null
@@ -1,73 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object meshQualityDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-//- Maximum non-orthogonality allowed. Set to 180 to disable.
-maxNonOrtho 65;
-
-//- Max skewness allowed. Set to <0 to disable.
-maxBoundarySkewness 50;
-maxInternalSkewness 10;
-
-//- Max concaveness allowed. Is angle (in degrees) below which concavity
-// is allowed. 0 is straight face, <0 would be convex face.
-// Set to 180 to disable.
-maxConcave 80;
-
-//- Minimum quality of the tet formed by the face-centre
-// and variable base point minimum decomposition triangles and
-// the cell centre. This has to be a positive number for tracking
-// to work. Set to very negative number (e.g. -1E30) to
-// disable.
-// <0 = inside out tet,
-// 0 = flat tet
-// 1 = regular tet
-minTetQuality 1e-30;
-
-//- Minimum pyramid volume. Is absolute volume of cell pyramid.
-// Set to a sensible fraction of the smallest cell volume expected.
-// Set to very negative number (e.g. -1E30) to disable.
-minVol 1e-20;
-
-//- Minimum face area. Set to <0 to disable.
-minArea -1;
-
-//- Minimum face twist. Set to <-1 to disable. dot product of face normal
-//- and face centre triangles normal
-minTwist 0.001;
-
-//- minimum normalised cell determinant
-//- 1 = hex, <= 0 = folded or flattened illegal cell
-minDeterminant 0.001;
-
-//- minFaceWeight (0 -> 0.5)
-minFaceWeight 0.02;
-
-//- minVolRatio (0 -> 1)
-minVolRatio 0.01;
-
-//must be >0 for Fluent compatibility
-minTriangleTwist -1;
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.C
deleted file mode 100644
index a0327ce04f9b5e7b7cc622a0190115b6d21f7be7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.C
+++ /dev/null
@@ -1,233 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "DelaunayMesh.H"
-#include "labelPair.H"
-#include "PrintTable.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * Static Member Functions * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-template<class Triangulation>
-Foam::DelaunayMesh<Triangulation>::DelaunayMesh()
-:
- Triangulation(),
- vertexCount_(0),
- cellCount_(0)
-{}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-template<class Triangulation>
-Foam::DelaunayMesh<Triangulation>::~DelaunayMesh()
-{}
-
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * Protected Member Functions * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-template<class Triangulation>
-void Foam::DelaunayMesh<Triangulation>::reset()
-{
- Info<< "Clearing triangulation" << endl;
-
- this->clear();
-
- resetVertexCount();
- resetCellCount();
-}
-
-
-template<class Triangulation>
-void Foam::DelaunayMesh<Triangulation>::insertPoints(const List<Vb>& vertices)
-{
- rangeInsertWithInfo
- (
- vertices.begin(),
- vertices.end(),
- true
- );
-}
-
-
-template<class Triangulation>
-bool Foam::DelaunayMesh<Triangulation>::Traits_for_spatial_sort::Less_x_3::
-operator()
-(
- const Point_3& p,
- const Point_3& q
-) const
-{
- return typename Gt::Less_x_3()(*(p.first), *(q.first));
-}
-
-template<class Triangulation>
-bool Foam::DelaunayMesh<Triangulation>::Traits_for_spatial_sort::Less_y_3::
-operator()
-(
- const Point_3& p,
- const Point_3& q
-) const
-{
- return typename Gt::Less_y_3()(*(p.first), *(q.first));
-}
-
-template<class Triangulation>
-bool Foam::DelaunayMesh<Triangulation>::Traits_for_spatial_sort::Less_z_3::
-operator()
-(
- const Point_3& p,
- const Point_3& q
-) const
-{
- return typename Gt::Less_z_3()(*(p.first), *(q.first));
-}
-
-template<class Triangulation>
-typename Foam::DelaunayMesh<Triangulation>::Traits_for_spatial_sort::Less_x_3
-Foam::DelaunayMesh<Triangulation>::Traits_for_spatial_sort::less_x_3_object()
-const
-{
- return Less_x_3();
-}
-
-template<class Triangulation>
-typename Foam::DelaunayMesh<Triangulation>::Traits_for_spatial_sort::Less_y_3
-Foam::DelaunayMesh<Triangulation>::Traits_for_spatial_sort::less_y_3_object()
-const
-{
- return Less_y_3();
-}
-
-template<class Triangulation>
-typename Foam::DelaunayMesh<Triangulation>::Traits_for_spatial_sort::Less_z_3
-Foam::DelaunayMesh<Triangulation>::Traits_for_spatial_sort::less_z_3_object()
-const
-{
- return Less_z_3();
-}
-
-
-template<class Triangulation>
-template<class PointIterator>
-void Foam::DelaunayMesh<Triangulation>::rangeInsertWithInfo
-(
- PointIterator begin,
- PointIterator end,
- bool printErrors
-)
-{
- typedef DynamicList
- <
- std::pair
- <
- const typename Triangulation::Point*,
- label
- >
- > vectorPairPointIndex;
-
- vectorPairPointIndex points;
-
- label count = 0;
- for (PointIterator it = begin; it != end; ++it)
- {
- points.append
- (
- std::make_pair(&(it->point()), count++)
- );
- }
-
- std::random_shuffle(points.begin(), points.end());
-
- spatial_sort
- (
- points.begin(),
- points.end(),
- Traits_for_spatial_sort()
- );
-
- Vertex_handle hint;
-
- for
- (
- typename vectorPairPointIndex::const_iterator p = points.begin();
- p != points.end();
- ++p
- )
- {
- const size_t checkInsertion = Triangulation::number_of_vertices();
-
- hint = this->insert(*(p->first), hint);
-
- const Vb& vert = *(begin + p->second);
-
- if (checkInsertion != Triangulation::number_of_vertices() - 1)
- {
- if (printErrors)
- {
- Vertex_handle nearV =
- Triangulation::nearest_vertex(*(p->first));
-
- Pout<< "Failed insertion : " << vert.info()
- << " nearest : " << nearV->info();
- }
- }
- else
- {
- hint->index() = getNewVertexIndex();
- hint->type() = vert.type();
- hint->procIndex() = vert.procIndex();
- hint->targetCellSize() = vert.targetCellSize();
- hint->alignment() = vert.alignment();
- }
- }
-}
-
-
-// * * * * * * * * * * * * * * Member Operators * * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * Friend Functions * * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * Friend Operators * * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "DelaunayMeshIO.C"
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.H
deleted file mode 100644
index bdeee880e78e1b5bfc9fdf6b0ae7050c915453eb..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMesh.H
+++ /dev/null
@@ -1,238 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::DelaunayMesh
-
-Description
- The vertex and cell classes must have an index defined
-
-SourceFiles
- DelaunayMeshI.H
- DelaunayMesh.C
- DelaunayMeshIO.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef DelaunayMesh_H
-#define DelaunayMesh_H
-
-#include "Pair.H"
-#include "HashSet.H"
-#include "FixedList.H"
-#include "boundBox.H"
-#include "indexedVertex.H"
-#include "CGALTriangulation3Ddefs.H"
-#include "autoPtr.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-class fvMesh;
-
-/*---------------------------------------------------------------------------*\
- Class DelaunayMesh Declaration
-\*---------------------------------------------------------------------------*/
-
-template<class Triangulation>
-class DelaunayMesh
-:
- public Triangulation
-{
-public:
-
- typedef typename Triangulation::Cell_handle Cell_handle;
- typedef typename Triangulation::Vertex_handle Vertex_handle;
- typedef typename Triangulation::Point Point;
- typedef typename Triangulation::Facet Facet;
-
- typedef typename Triangulation::Finite_vertices_iterator
- Finite_vertices_iterator;
- typedef typename Triangulation::Finite_cells_iterator
- Finite_cells_iterator;
- typedef typename Triangulation::Finite_facets_iterator
- Finite_facets_iterator;
-
- typedef HashSet
- <
- Pair<label>,
- FixedList<label, 2>::Hash<>
- > labelPairHashSet;
-
-
-private:
-
- // Private data
-
- //- Keep track of the number of vertices that have been added.
- // This allows a unique index to be assigned to each vertex.
- mutable label vertexCount_;
-
- //- Keep track of the number of cells that have been added.
- // This allows a unique index to be assigned to each cell.
- mutable label cellCount_;
-
- //- Spatial sort traits to use with a pair of point pointers and an int.
- // Taken from a post on the CGAL lists: 2010-01/msg00004.html by
- // Sebastien Loriot (Geometry Factory).
- struct Traits_for_spatial_sort
- :
- public Triangulation::Geom_traits
- {
- typedef typename Triangulation::Geom_traits Gt;
-
- typedef std::pair<const typename Triangulation::Point*, int>
- Point_3;
-
- struct Less_x_3
- {
- bool operator()(const Point_3& p, const Point_3& q) const;
- };
-
- struct Less_y_3
- {
- bool operator()(const Point_3& p, const Point_3& q) const;
- };
-
- struct Less_z_3
- {
- bool operator()(const Point_3& p, const Point_3& q) const;
- };
-
- Less_x_3 less_x_3_object() const;
- Less_y_3 less_y_3_object() const;
- Less_z_3 less_z_3_object() const;
- };
-
-
- // Private Member Functions
-
- void sortFaces
- (
- faceList& faces,
- labelList& owner,
- labelList& neighbour
- ) const;
-
- void addPatches
- (
- const label nInternalFaces,
- faceList& faces,
- labelList& owner,
- labelList& patchSizes,
- labelList& patchStarts,
- const List<DynamicList<face> >& patchFaces,
- const List<DynamicList<label> >& patchOwners
- ) const;
-
- //- Disallow default bitwise copy construct
- DelaunayMesh(const DelaunayMesh<Triangulation>&);
-
- //- Disallow default bitwise assignment
- void operator=(const DelaunayMesh<Triangulation>&);
-
-
-public:
-
- // Constructors
-
- //- Construct from components
- DelaunayMesh();
-
-
- //- Destructor
- ~DelaunayMesh();
-
-
- // Member Functions
-
- inline label getNewVertexIndex() const;
-
- inline label getNewCellIndex() const;
-
- inline label cellCount() const;
-
- inline void resetCellCount();
-
- inline label vertexCount() const;
-
- inline void resetVertexCount();
-
-
- //- Remove the entire triangulation
- void reset();
-
- void insertPoints(const List<Vb>& vertices);
-
- //- Function inserting points into a triangulation and setting the
- // index and type data of the point in the correct order. This is
- // faster than inserting points individually.
- //
- // Adapted from a post on the CGAL lists: 2010-01/msg00004.html by
- // Sebastien Loriot (Geometry Factory).
- template<class PointIterator>
- void rangeInsertWithInfo
- (
- PointIterator begin,
- PointIterator end,
- bool printErrors = true
- );
-
-
- // Queries
-
- void printInfo(Ostream& os) const;
-
- //- Create an fvMesh from the triangulation.
- // The mesh is not parallel consistent - only used for viewing
- autoPtr<fvMesh> createMesh
- (
- const fileName& name,
- const Time& runTime,
- labelList& vertexMap,
- labelList& cellMap
- ) const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "DelaunayMeshI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#ifdef NoRepository
-# include "DelaunayMesh.C"
-#endif
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMeshI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMeshI.H
deleted file mode 100644
index 841e5c9024b5954e80a897148c00e4c3bfea3e4e..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMeshI.H
+++ /dev/null
@@ -1,119 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * * Destructors * * * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-template<class Triangulation>
-inline Foam::label Foam::DelaunayMesh<Triangulation>::getNewVertexIndex() const
-{
- label id = vertexCount_++;
-
- if (id == labelMax)
- {
- WarningIn
- (
- "Foam::DelaunayMesh<Triangulation>::getNewVertexIndex() const"
- ) << "Vertex counter has overflowed." << endl;
- }
-
- return id;
-}
-
-
-template<class Triangulation>
-inline Foam::label Foam::DelaunayMesh<Triangulation>::getNewCellIndex() const
-{
- label id = cellCount_++;
-
- if (id == labelMax)
- {
- WarningIn
- (
- "Foam::DelaunayMesh<Triangulation>::getNewCellIndex() const"
- ) << "Cell counter has overflowed." << endl;
- }
-
- return id;
-}
-
-
-template<class Triangulation>
-Foam::label Foam::DelaunayMesh<Triangulation>::cellCount() const
-{
- return cellCount_;
-}
-
-
-template<class Triangulation>
-void Foam::DelaunayMesh<Triangulation>::resetCellCount()
-{
- cellCount_ = 0;
-}
-
-
-template<class Triangulation>
-Foam::label Foam::DelaunayMesh<Triangulation>::vertexCount() const
-{
- return vertexCount_;
-}
-
-
-template<class Triangulation>
-void Foam::DelaunayMesh<Triangulation>::resetVertexCount()
-{
- vertexCount_ = 0;
-}
-
-
-// * * * * * * * * * * * * * * * Member Operators * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * Friend Functions * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * Friend Operators * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * IOstream Operators * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * Ostream Operator * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMeshIO.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMeshIO.C
deleted file mode 100644
index 63a9889308ee3273e0b372f886edd6efd3e10d51..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DelaunayMeshIO.C
+++ /dev/null
@@ -1,391 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "DelaunayMesh.H"
-#include "fvMesh.H"
-#include "pointConversion.H"
-#include "wallPolyPatch.H"
-#include "processorPolyPatch.H"
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-template<class Triangulation>
-void Foam::DelaunayMesh<Triangulation>::sortFaces
-(
- faceList& faces,
- labelList& owner,
- labelList& neighbour
-) const
-{
- // Upper triangular order:
- // + owner is sorted in ascending cell order
- // + within each block of equal value for owner, neighbour is sorted in
- // ascending cell order.
- // + faces sorted to correspond
- // e.g.
- // owner | neighbour
- // 0 | 2
- // 0 | 23
- // 0 | 71
- // 1 | 23
- // 1 | 24
- // 1 | 91
-
- List<labelPair> ownerNeighbourPair(owner.size());
-
- forAll(ownerNeighbourPair, oNI)
- {
- ownerNeighbourPair[oNI] = labelPair(owner[oNI], neighbour[oNI]);
- }
-
- Info<< nl
- << "Sorting faces, owner and neighbour into upper triangular order"
- << endl;
-
- labelList oldToNew;
-
- sortedOrder(ownerNeighbourPair, oldToNew);
-
- oldToNew = invert(oldToNew.size(), oldToNew);
-
- inplaceReorder(oldToNew, faces);
- inplaceReorder(oldToNew, owner);
- inplaceReorder(oldToNew, neighbour);
-}
-
-
-template<class Triangulation>
-void Foam::DelaunayMesh<Triangulation>::addPatches
-(
- const label nInternalFaces,
- faceList& faces,
- labelList& owner,
- labelList& patchSizes,
- labelList& patchStarts,
- const List<DynamicList<face> >& patchFaces,
- const List<DynamicList<label> >& patchOwners
-) const
-{
- label nPatches = patchFaces.size();
-
- patchSizes.setSize(nPatches, -1);
- patchStarts.setSize(nPatches, -1);
-
- label nBoundaryFaces = 0;
-
- forAll(patchFaces, p)
- {
- patchSizes[p] = patchFaces[p].size();
- patchStarts[p] = nInternalFaces + nBoundaryFaces;
-
- nBoundaryFaces += patchSizes[p];
- }
-
- faces.setSize(nInternalFaces + nBoundaryFaces);
- owner.setSize(nInternalFaces + nBoundaryFaces);
-
- label faceI = nInternalFaces;
-
- forAll(patchFaces, p)
- {
- forAll(patchFaces[p], f)
- {
- faces[faceI] = patchFaces[p][f];
- owner[faceI] = patchOwners[p][f];
-
- faceI++;
- }
- }
-}
-
-
-// * * * * * * * * * * * * * * Member Operators * * * * * * * * * * * * * * //
-
-template<class Triangulation>
-void Foam::DelaunayMesh<Triangulation>::printInfo(Ostream& os) const
-{
- PrintTable<word, label> triInfoTable("Mesh Statistics");
-
- triInfoTable.add("Points", Triangulation::number_of_vertices());
- triInfoTable.add("Edges", Triangulation::number_of_finite_edges());
- triInfoTable.add("Faces", Triangulation::number_of_finite_facets());
- triInfoTable.add("Cells", Triangulation::number_of_finite_cells());
-
- scalar minSize = GREAT;
- scalar maxSize = 0;
-
- for
- (
- Finite_vertices_iterator vit = Triangulation::finite_vertices_begin();
- vit != Triangulation::finite_vertices_end();
- ++vit
- )
- {
- if (!vit->farPoint())
- {
- minSize = min(vit->targetCellSize(), minSize);
- maxSize = max(vit->targetCellSize(), maxSize);
- }
- }
-
- Info<< incrIndent;
- triInfoTable.print(Info, true, true);
-
- Info<< "Size (Min/Max) = "
- << returnReduce(minSize, minOp<scalar>()) << " "
- << returnReduce(maxSize, maxOp<scalar>()) << endl;
-
- Info<< decrIndent;
-}
-
-
-template<class Triangulation>
-Foam::autoPtr<Foam::fvMesh>
-Foam::DelaunayMesh<Triangulation>::createMesh
-(
- const fileName& name,
- const Time& runTime,
- labelList& vertexMap,
- labelList& cellMap
-) const
-{
- pointField points(Triangulation::number_of_vertices());
- faceList faces(Triangulation::number_of_finite_facets());
- labelList owner(Triangulation::number_of_finite_facets());
- labelList neighbour(Triangulation::number_of_finite_facets());
-
- wordList patchNames(1, "cvMesh_defaultPatch");
- wordList patchTypes(1, wallPolyPatch::typeName);
-
- labelList patchSizes(1, 0);
- labelList patchStarts(1, 0);
-
- List<DynamicList<face> > patchFaces(1, DynamicList<face>());
- List<DynamicList<label> > patchOwners(1, DynamicList<label>());
-
- vertexMap.setSize(Triangulation::number_of_vertices());
- cellMap.setSize(Triangulation::number_of_finite_cells());
-
- // Calculate pts and a map of point index to location in pts.
- label vertI = 0;
-
- for
- (
- Finite_vertices_iterator vit = Triangulation::finite_vertices_begin();
- vit != Triangulation::finite_vertices_end();
- ++vit
- )
- {
- if (!vit->farPoint())
- {
- vertexMap[vit->index()] = vertI;
- points[vertI] = topoint(vit->point());
- vertI++;
- }
- }
-
- points.setSize(vertI);
-
- // Index the cells
- label cellI = 0;
-
- for
- (
- Finite_cells_iterator cit = Triangulation::finite_cells_begin();
- cit != Triangulation::finite_cells_end();
- ++cit
- )
- {
- if
- (
- !cit->hasFarPoint()
- && !Triangulation::is_infinite(cit)
- )
- {
- cellMap[cit->cellIndex()] = cellI++;
- }
- }
-
- label faceI = 0;
- labelList verticesOnTriFace(3, -1);
- face newFace(verticesOnTriFace);
-
- for
- (
- Finite_facets_iterator fit = Triangulation::finite_facets_begin();
- fit != Triangulation::finite_facets_end();
- ++fit
- )
- {
- const Cell_handle c1(fit->first);
- const int oppositeVertex = fit->second;
- const Cell_handle c2(c1->neighbor(oppositeVertex));
-
- label c1I = Cb::ctFar;
- bool c1Real = false;
- if (!c1->hasFarPoint() && !Triangulation::is_infinite(c1))
- {
- c1I = cellMap[c1->cellIndex()];
- c1Real = true;
- }
-
- label c2I = Cb::ctFar;
- bool c2Real = false;
- if (!c2->hasFarPoint() && !Triangulation::is_infinite(c2))
- {
- c2I = cellMap[c2->cellIndex()];
- c2Real = true;
- }
-
- if (!c1Real && !c2Real)
- {
- // Both tets are outside, skip
- continue;
- }
-
- label ownerCell = -1;
- label neighbourCell = -1;
-
- for (label i = 0; i < 3; i++)
- {
- verticesOnTriFace[i] = vertexMap
- [
- c1->vertex
- (
- Triangulation::vertex_triple_index(oppositeVertex, i)
- )->index()
- ];
- }
-
- newFace = face(verticesOnTriFace);
-
- if (!c1Real || !c2Real)
- {
- // Boundary face...
- if (!c1Real)
- {
- //... with c1 outside
- ownerCell = c2I;
- }
- else
- {
- // ... with c2 outside
- ownerCell = c1I;
-
- reverse(newFace);
- }
-
- patchFaces[0].append(newFace);
- patchOwners[0].append(ownerCell);
- }
- else
- {
- // Internal face...
- if (c1I < c2I)
- {
- // ...with c1 as the ownerCell
- ownerCell = c1I;
- neighbourCell = c2I;
-
- reverse(newFace);
- }
- else
- {
- // ...with c2 as the ownerCell
- ownerCell = c2I;
- neighbourCell = c1I;
- }
-
- faces[faceI] = newFace;
- owner[faceI] = ownerCell;
- neighbour[faceI] = neighbourCell;
- faceI++;
- }
- }
-
- faces.setSize(faceI);
- owner.setSize(faceI);
- neighbour.setSize(faceI);
-
- sortFaces(faces, owner, neighbour);
-
- addPatches
- (
- faceI,
- faces,
- owner,
- patchSizes,
- patchStarts,
- patchFaces,
- patchOwners
- );
-
- autoPtr<fvMesh> meshPtr
- (
- new fvMesh
- (
- IOobject
- (
- name,
- runTime.timeName(),
- runTime,
- IOobject::NO_READ,
- IOobject::NO_WRITE
- ),
- xferMove(points),
- xferMove(faces),
- xferMove(owner),
- xferMove(neighbour)
- )
- );
-
- List<polyPatch*> patches(patchStarts.size());
-
- label nValidPatches = 0;
-
- forAll(patches, p)
- {
- patches[nValidPatches] = polyPatch::New
- (
- patchTypes[p],
- patchNames[p],
- patchSizes[p],
- patchStarts[p],
- nValidPatches,
- meshPtr().boundaryMesh()
- ).ptr();
-
- nValidPatches++;
- }
-
- patches.setSize(nValidPatches);
-
- meshPtr().addFvPatches(patches);
-
- return meshPtr;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.C
deleted file mode 100644
index b2ed781b8b389e32c165a9fc6cddfcb3d930dc1b..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.C
+++ /dev/null
@@ -1,938 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "DistributedDelaunayMesh.H"
-#include "meshSearch.H"
-#include "mapDistribute.H"
-#include "zeroGradientFvPatchFields.H"
-#include "pointConversion.H"
-#include "indexedVertexEnum.H"
-#include "IOmanip.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * Static Member Functions * * * * * * * * * * * * * //
-
-template<class Triangulation>
-Foam::autoPtr<Foam::mapDistribute>
-Foam::DistributedDelaunayMesh<Triangulation>::buildMap
-(
- const List<label>& toProc
-)
-{
- // Determine send map
- // ~~~~~~~~~~~~~~~~~~
-
- // 1. Count
- labelList nSend(Pstream::nProcs(), 0);
-
- forAll(toProc, i)
- {
- label procI = toProc[i];
-
- nSend[procI]++;
- }
-
- // Send over how many I need to receive
- // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- labelListList sendSizes(Pstream::nProcs());
-
- sendSizes[Pstream::myProcNo()] = nSend;
-
- combineReduce(sendSizes, UPstream::listEq());
-
- // 2. Size sendMap
- labelListList sendMap(Pstream::nProcs());
-
- forAll(nSend, procI)
- {
- sendMap[procI].setSize(nSend[procI]);
-
- nSend[procI] = 0;
- }
-
- // 3. Fill sendMap
- forAll(toProc, i)
- {
- label procI = toProc[i];
-
- sendMap[procI][nSend[procI]++] = i;
- }
-
- // Determine receive map
- // ~~~~~~~~~~~~~~~~~~~~~
-
- labelListList constructMap(Pstream::nProcs());
-
- // Local transfers first
- constructMap[Pstream::myProcNo()] = identity
- (
- sendMap[Pstream::myProcNo()].size()
- );
-
- label constructSize = constructMap[Pstream::myProcNo()].size();
-
- forAll(constructMap, procI)
- {
- if (procI != Pstream::myProcNo())
- {
- label nRecv = sendSizes[procI][Pstream::myProcNo()];
-
- constructMap[procI].setSize(nRecv);
-
- for (label i = 0; i < nRecv; i++)
- {
- constructMap[procI][i] = constructSize++;
- }
- }
- }
-
- return autoPtr<mapDistribute>
- (
- new mapDistribute
- (
- constructSize,
- sendMap.xfer(),
- constructMap.xfer()
- )
- );
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-template<class Triangulation>
-Foam::DistributedDelaunayMesh<Triangulation>::DistributedDelaunayMesh()
-:
- DelaunayMesh<Triangulation>(),
- allBackgroundMeshBounds_()
-{}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-template<class Triangulation>
-Foam::DistributedDelaunayMesh<Triangulation>::~DistributedDelaunayMesh()
-{}
-
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-template<class Triangulation>
-bool Foam::DistributedDelaunayMesh<Triangulation>::distributeBoundBoxes
-(
- const boundBox& bb
-)
-{
- allBackgroundMeshBounds_.reset(new List<boundBox>(Pstream::nProcs()));
-
- // Give the bounds of every processor to every other processor
- allBackgroundMeshBounds_()[Pstream::myProcNo()] = bb;
-
- Pstream::gatherList(allBackgroundMeshBounds_());
- Pstream::scatterList(allBackgroundMeshBounds_());
-
- return true;
-}
-
-
-template<class Triangulation>
-bool Foam::DistributedDelaunayMesh<Triangulation>::isLocal
-(
- const Vertex_handle& v
-) const
-{
- return isLocal(v->procIndex());
-}
-
-
-template<class Triangulation>
-bool Foam::DistributedDelaunayMesh<Triangulation>::isLocal
-(
- const label localProcIndex
-) const
-{
- return localProcIndex == Pstream::myProcNo();
-}
-
-
-template<class Triangulation>
-Foam::labelList Foam::DistributedDelaunayMesh<Triangulation>::overlapProcessors
-(
- const point& centre,
- const scalar radiusSqr
-) const
-{
- DynamicList<label> toProc(Pstream::nProcs());
-
- forAll(allBackgroundMeshBounds_(), procI)
- {
- // Test against the bounding box of the processor
- if
- (
- !isLocal(procI)
- && allBackgroundMeshBounds_()[procI].overlaps(centre, radiusSqr)
- )
- {
- toProc.append(procI);
- }
- }
-
- return toProc;
-}
-
-
-template<class Triangulation>
-bool Foam::DistributedDelaunayMesh<Triangulation>::checkProcBoundaryCell
-(
- const Cell_handle& cit,
- Map<labelList>& circumsphereOverlaps
-) const
-{
- const Foam::point& cc = cit->dual();
-
- const scalar crSqr = magSqr
- (
- cc - topoint(cit->vertex(0)->point())
- );
-
- labelList circumsphereOverlap = overlapProcessors
- (
- cc,
- sqr(1.01)*crSqr
- );
-
- cit->cellIndex() = this->getNewCellIndex();
-
- if (!circumsphereOverlap.empty())
- {
- circumsphereOverlaps.insert(cit->cellIndex(), circumsphereOverlap);
-
- return true;
- }
-
- return false;
-}
-
-
-template<class Triangulation>
-void Foam::DistributedDelaunayMesh<Triangulation>::findProcessorBoundaryCells
-(
- Map<labelList>& circumsphereOverlaps
-) const
-{
- // Start by assuming that all the cells have no index
- // If they do, they have already been visited so ignore them
-
- labelHashSet cellToCheck
- (
- Triangulation::number_of_finite_cells()
- /Pstream::nProcs()
- );
-
- for
- (
- All_cells_iterator cit = Triangulation::all_cells_begin();
- cit != Triangulation::all_cells_end();
- ++cit
- )
- {
- if (Triangulation::is_infinite(cit))
- {
- // Index of infinite vertex in this cell.
- int i = cit->index(Triangulation::infinite_vertex());
-
- Cell_handle c = cit->neighbor(i);
-
- if (c->unassigned())
- {
- c->cellIndex() = this->getNewCellIndex();
-
- if (checkProcBoundaryCell(c, circumsphereOverlaps))
- {
- cellToCheck.insert(c->cellIndex());
- }
- }
- }
- else if (cit->parallelDualVertex())
- {
- if (cit->unassigned())
- {
- if (checkProcBoundaryCell(cit, circumsphereOverlaps))
- {
- cellToCheck.insert(cit->cellIndex());
- }
- }
- }
- }
-
- for
- (
- Finite_cells_iterator cit = Triangulation::finite_cells_begin();
- cit != Triangulation::finite_cells_end();
- ++cit
- )
- {
- if (cellToCheck.found(cit->cellIndex()))
- {
- // Get the neighbours and check them
- for (label adjCellI = 0; adjCellI < 4; ++adjCellI)
- {
- Cell_handle citNeighbor = cit->neighbor(adjCellI);
-
- // Ignore if has far point or previously visited
- if
- (
- !citNeighbor->unassigned()
- || !citNeighbor->internalOrBoundaryDualVertex()
- || Triangulation::is_infinite(citNeighbor)
- )
- {
- continue;
- }
-
- checkProcBoundaryCell
- (
- citNeighbor,
- circumsphereOverlaps
- );
- }
- }
- }
-}
-
-
-template<class Triangulation>
-void Foam::DistributedDelaunayMesh<Triangulation>::markVerticesToRefer
-(
- const Map<labelList>& circumsphereOverlaps,
- PtrList<labelPairHashSet>& referralVertices,
- DynamicList<label>& targetProcessor,
- DynamicList<Vb>& parallelInfluenceVertices
-)
-{
- // Relying on the order of iteration of cells being the same as before
- for
- (
- Finite_cells_iterator cit = Triangulation::finite_cells_begin();
- cit != Triangulation::finite_cells_end();
- ++cit
- )
- {
- if (Triangulation::is_infinite(cit))
- {
- continue;
- }
-
- Map<labelList>::const_iterator iter =
- circumsphereOverlaps.find(cit->cellIndex());
-
- // Pre-tested circumsphere potential influence
- if (iter != circumsphereOverlaps.cend())
- {
- const labelList& citOverlaps = iter();
-
- forAll(citOverlaps, cOI)
- {
- label procI = citOverlaps[cOI];
-
- for (int i = 0; i < 4; i++)
- {
- Vertex_handle v = cit->vertex(i);
-
- if (v->farPoint())
- {
- continue;
- }
-
- label vProcIndex = v->procIndex();
- label vIndex = v->index();
-
- const labelPair procIndexPair(vProcIndex, vIndex);
-
- // Using the hashSet to ensure that each vertex is only
- // referred once to each processor.
- // Do not refer a vertex to its own processor.
- if (vProcIndex != procI)
- {
- if (referralVertices[procI].insert(procIndexPair))
- {
- targetProcessor.append(procI);
-
- parallelInfluenceVertices.append
- (
- Vb
- (
- v->point(),
- v->index(),
- v->type(),
- v->procIndex()
- )
- );
-
- parallelInfluenceVertices.last().targetCellSize() =
- v->targetCellSize();
- parallelInfluenceVertices.last().alignment() =
- v->alignment();
- }
- }
- }
- }
- }
- }
-}
-
-
-template<class Triangulation>
-Foam::label Foam::DistributedDelaunayMesh<Triangulation>::referVertices
-(
- const DynamicList<label>& targetProcessor,
- DynamicList<Vb>& parallelVertices,
- PtrList<labelPairHashSet>& referralVertices,
- labelPairHashSet& receivedVertices
-)
-{
- DynamicList<Vb> referredVertices(targetProcessor.size());
-
- const label preDistributionSize = parallelVertices.size();
-
- mapDistribute pointMap = buildMap(targetProcessor);
-
- // Make a copy of the original list.
- DynamicList<Vb> originalParallelVertices(parallelVertices);
-
- pointMap.distribute(parallelVertices);
-
- for (label procI = 0; procI < Pstream::nProcs(); procI++)
- {
- const labelList& constructMap = pointMap.constructMap()[procI];
-
- if (constructMap.size())
- {
- forAll(constructMap, i)
- {
- const Vb& v = parallelVertices[constructMap[i]];
-
- if
- (
- v.procIndex() != Pstream::myProcNo()
- && !receivedVertices.found(labelPair(v.procIndex(), v.index()))
- )
- {
- referredVertices.append(v);
-
- receivedVertices.insert
- (
- labelPair(v.procIndex(), v.index())
- );
- }
- }
- }
- }
-
- label preInsertionSize = Triangulation::number_of_vertices();
-
- labelPairHashSet pointsNotInserted = rangeInsertReferredWithInfo
- (
- referredVertices.begin(),
- referredVertices.end()
- );
-
- if (!pointsNotInserted.empty())
- {
- for
- (
- typename labelPairHashSet::const_iterator iter
- = pointsNotInserted.begin();
- iter != pointsNotInserted.end();
- ++iter
- )
- {
- if (receivedVertices.found(iter.key()))
- {
- receivedVertices.erase(iter.key());
- }
- }
- }
-
- boolList pointInserted(parallelVertices.size(), true);
-
- forAll(parallelVertices, vI)
- {
- const labelPair procIndexI
- (
- parallelVertices[vI].procIndex(),
- parallelVertices[vI].index()
- );
-
- if (pointsNotInserted.found(procIndexI))
- {
- pointInserted[vI] = false;
- }
- }
-
- pointMap.reverseDistribute(preDistributionSize, pointInserted);
-
- forAll(originalParallelVertices, vI)
- {
- const label procIndex = targetProcessor[vI];
-
- if (!pointInserted[vI])
- {
- if (referralVertices[procIndex].size())
- {
- if
- (
- !referralVertices[procIndex].unset
- (
- labelPair
- (
- originalParallelVertices[vI].procIndex(),
- originalParallelVertices[vI].index()
- )
- )
- )
- {
- Pout<< "*** not found "
- << originalParallelVertices[vI].procIndex()
- << " " << originalParallelVertices[vI].index() << endl;
- }
-
- }
- }
- }
-
- label postInsertionSize = Triangulation::number_of_vertices();
-
- reduce(preInsertionSize, sumOp<label>());
- reduce(postInsertionSize, sumOp<label>());
-
- label nTotalToInsert = referredVertices.size();
-
- reduce(nTotalToInsert, sumOp<label>());
-
- if (preInsertionSize + nTotalToInsert != postInsertionSize)
- {
- label nNotInserted =
- returnReduce(pointsNotInserted.size(), sumOp<label>());
-
- Info<< " Inserted = "
- << setw(name(label(Triangulation::number_of_finite_cells())).size())
- << nTotalToInsert - nNotInserted
- << " / " << nTotalToInsert << endl;
-
- nTotalToInsert -= nNotInserted;
- }
- else
- {
- Info<< " Inserted = " << nTotalToInsert << endl;
- }
-
- return nTotalToInsert;
-}
-
-
-template<class Triangulation>
-void Foam::DistributedDelaunayMesh<Triangulation>::sync
-(
- const boundBox& bb,
- PtrList<labelPairHashSet>& referralVertices,
- labelPairHashSet& receivedVertices,
- bool iterateReferral
-)
-{
- if (!Pstream::parRun())
- {
- return;
- }
-
- if (allBackgroundMeshBounds_.empty())
- {
- distributeBoundBoxes(bb);
- }
-
- label nVerts = Triangulation::number_of_vertices();
- label nCells = Triangulation::number_of_finite_cells();
-
- DynamicList<Vb> parallelInfluenceVertices(0.1*nVerts);
- DynamicList<label> targetProcessor(0.1*nVerts);
-
- // Some of these values will not be used, i.e. for non-real cells
- DynamicList<Foam::point> circumcentre(0.1*nVerts);
- DynamicList<scalar> circumradiusSqr(0.1*nVerts);
-
- Map<labelList> circumsphereOverlaps(nCells);
-
- findProcessorBoundaryCells(circumsphereOverlaps);
-
- Info<< " Influences = "
- << setw(name(nCells).size())
- << returnReduce(circumsphereOverlaps.size(), sumOp<label>()) << " / "
- << returnReduce(nCells, sumOp<label>());
-
- markVerticesToRefer
- (
- circumsphereOverlaps,
- referralVertices,
- targetProcessor,
- parallelInfluenceVertices
- );
-
- referVertices
- (
- targetProcessor,
- parallelInfluenceVertices,
- referralVertices,
- receivedVertices
- );
-
- if (iterateReferral)
- {
- label oldNReferred = 0;
- label nIterations = 1;
-
- Info<< incrIndent << indent
- << "Iteratively referring referred vertices..."
- << endl;
- do
- {
- Info<< indent << "Iteration " << nIterations++ << ":";
-
- circumsphereOverlaps.clear();
- targetProcessor.clear();
- parallelInfluenceVertices.clear();
-
- findProcessorBoundaryCells(circumsphereOverlaps);
-
- nCells = Triangulation::number_of_finite_cells();
-
- Info<< " Influences = "
- << setw(name(nCells).size())
- << returnReduce(circumsphereOverlaps.size(), sumOp<label>())
- << " / "
- << returnReduce(nCells, sumOp<label>());
-
- markVerticesToRefer
- (
- circumsphereOverlaps,
- referralVertices,
- targetProcessor,
- parallelInfluenceVertices
- );
-
- label nReferred = referVertices
- (
- targetProcessor,
- parallelInfluenceVertices,
- referralVertices,
- receivedVertices
- );
-
- if (nReferred == 0 || nReferred == oldNReferred)
- {
- break;
- }
-
- oldNReferred = nReferred;
-
- } while (true);
-
- Info<< decrIndent;
- }
-}
-
-
-// * * * * * * * * * * * * Protected Member Functions * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-template<class Triangulation>
-bool Foam::DistributedDelaunayMesh<Triangulation>::distribute
-(
- const boundBox& bb
-)
-{
- notImplemented
- (
- "Foam::DistributedDelaunayMesh<Triangulation>::distribute"
- "("
- " const boundBox& bb"
- ")"
- );
-
- if (!Pstream::parRun())
- {
- return false;
- }
-
- distributeBoundBoxes(bb);
-
- return true;
-}
-
-
-template<class Triangulation>
-Foam::autoPtr<Foam::mapDistribute>
-Foam::DistributedDelaunayMesh<Triangulation>::distribute
-(
- const backgroundMeshDecomposition& decomposition
-)
-{
- if (!Pstream::parRun())
- {
- return autoPtr<mapDistribute>();
- }
-
- distributeBoundBoxes(decomposition.procBounds());
-
- DynamicList<point> points(Triangulation::number_of_vertices());
-
- for
- (
- Finite_vertices_iterator vit = Triangulation::finite_vertices_begin();
- vit != Triangulation::finite_vertices_end();
- ++vit
- )
- {
- if (vit->real())
- {
- points.append(topoint(vit->point()));
- }
- }
-
- autoPtr<mapDistribute> mapDist = decomposition.distributePoints(points);
-
- return mapDist;
-}
-
-
-template<class Triangulation>
-void Foam::DistributedDelaunayMesh<Triangulation>::sync(const boundBox& bb)
-{
- if (!Pstream::parRun())
- {
- return;
- }
-
- if (allBackgroundMeshBounds_.empty())
- {
- distributeBoundBoxes(bb);
- }
-
- const label nApproxReferred =
- Triangulation::number_of_vertices()
- /Pstream::nProcs();
-
- PtrList<labelPairHashSet> referralVertices(Pstream::nProcs());
- forAll(referralVertices, procI)
- {
- if (!isLocal(procI))
- {
- referralVertices.set(procI, new labelPairHashSet(nApproxReferred));
- }
- }
-
- labelPairHashSet receivedVertices(nApproxReferred);
-
- sync
- (
- bb,
- referralVertices,
- receivedVertices,
- true
- );
-}
-
-
-template<class Triangulation>
-template<class PointIterator>
-typename Foam::DistributedDelaunayMesh<Triangulation>::labelPairHashSet
-Foam::DistributedDelaunayMesh<Triangulation>::rangeInsertReferredWithInfo
-(
- PointIterator begin,
- PointIterator end,
- bool printErrors
-)
-{
- const boundBox& bb = allBackgroundMeshBounds_()[Pstream::myProcNo()];
-
- typedef DynamicList
- <
- std::pair<scalar, label>
- > vectorPairPointIndex;
-
- vectorPairPointIndex pointsBbDistSqr;
-
- label count = 0;
- for (PointIterator it = begin; it != end; ++it)
- {
- const Foam::point samplePoint(topoint(it->point()));
-
- scalar distFromBbSqr = 0;
-
- if (!bb.contains(samplePoint))
- {
- const Foam::point nearestPoint = bb.nearest(samplePoint);
-
- distFromBbSqr = magSqr(nearestPoint - samplePoint);
- }
-
- pointsBbDistSqr.append
- (
- std::make_pair(distFromBbSqr, count++)
- );
- }
-
- std::random_shuffle(pointsBbDistSqr.begin(), pointsBbDistSqr.end());
-
- // Sort in ascending order by the distance of the point from the centre
- // of the processor bounding box
- sort(pointsBbDistSqr.begin(), pointsBbDistSqr.end());
-
- typename Triangulation::Vertex_handle hint;
-
- typename Triangulation::Locate_type lt;
- int li, lj;
-
- label nNotInserted = 0;
-
- labelPairHashSet uninserted
- (
- Triangulation::number_of_vertices()
- /Pstream::nProcs()
- );
-
- for
- (
- typename vectorPairPointIndex::const_iterator p =
- pointsBbDistSqr.begin();
- p != pointsBbDistSqr.end();
- ++p
- )
- {
- const size_t checkInsertion = Triangulation::number_of_vertices();
-
- const Vb& vert = *(begin + p->second);
- const Point& pointToInsert = vert.point();
-
- // Locate the point
- Cell_handle c = Triangulation::locate(pointToInsert, lt, li, lj, hint);
-
- if (lt == Triangulation::VERTEX)
- {
- if (printErrors)
- {
- Vertex_handle nearV =
- Triangulation::nearest_vertex(pointToInsert);
-
- Pout<< "Failed insertion, point already exists" << nl
- << "Failed insertion : " << vert.info()
- << " nearest : " << nearV->info();
- }
-
- uninserted.insert(labelPair(vert.procIndex(), vert.index()));
- nNotInserted++;
-
- continue;
- }
-
- // Get the cells that conflict with p in a vector V,
- // and a facet on the boundary of this hole in f.
- std::vector<Cell_handle> V;
- typename Triangulation::Facet f;
-
- Triangulation::find_conflicts
- (
- pointToInsert,
- c,
- CGAL::Oneset_iterator<typename Triangulation::Facet>(f),
- std::back_inserter(V)
- );
-
- bool insert = false;
- for (size_t i = 0; i < V.size(); ++i)
- {
- if (V[i]->real() || V[i]->hasFarPoint())
- {
- insert = true;
- break;
- }
- }
-
- if (insert)
- {
- hint = Triangulation::insert_in_hole
- (
- pointToInsert,
- V.begin(),
- V.end(),
- f.first,
- f.second
- );
-
- if (checkInsertion != Triangulation::number_of_vertices() - 1)
- {
- if (printErrors)
- {
- Vertex_handle nearV =
- Triangulation::nearest_vertex(pointToInsert);
-
- Pout<< "Failed insertion : " << vert.info()
- << " nearest : " << nearV->info();
- }
- }
- else
- {
- hint->index() = vert.index();
- hint->type() = vert.type();
- hint->procIndex() = vert.procIndex();
- hint->targetCellSize() = vert.targetCellSize();
- hint->alignment() = vert.alignment();
- }
- }
- else
- {
- uninserted.insert(labelPair(vert.procIndex(), vert.index()));
- nNotInserted++;
- }
- }
-
- return uninserted;
-}
-
-
-// * * * * * * * * * * * * * * Member Operators * * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * Friend Functions * * * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * Friend Operators * * * * * * * * * * * * * * //
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.H
deleted file mode 100644
index fcc5d8c2ba8926842f6d5a5d205334cab3e7f992..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/DelaunayMesh/DistributedDelaunayMesh.H
+++ /dev/null
@@ -1,208 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::DistributedDelaunayMesh
-
-Description
-
-SourceFiles
- DistributedDelaunayMeshI.H
- DistributedDelaunayMesh.C
- DistributedDelaunayMeshIO.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef DistributedDelaunayMesh_H
-#define DistributedDelaunayMesh_H
-
-#include "DelaunayMesh.H"
-#include "backgroundMeshDecomposition.H"
-#include "autoPtr.H"
-#include "boundBox.H"
-#include "indexedVertex.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-class mapDistribute;
-
-/*---------------------------------------------------------------------------*\
- Class DistributedDelaunayMesh Declaration
-\*---------------------------------------------------------------------------*/
-
-template<class Triangulation>
-class DistributedDelaunayMesh
-:
- public DelaunayMesh<Triangulation>
-{
-public:
-
- typedef typename Triangulation::Vertex_handle Vertex_handle;
- typedef typename Triangulation::Cell_handle Cell_handle;
- typedef typename Triangulation::Point Point;
-
- typedef typename Triangulation::Finite_vertices_iterator
- Finite_vertices_iterator;
- typedef typename Triangulation::Finite_cells_iterator
- Finite_cells_iterator;
- typedef typename Triangulation::All_cells_iterator
- All_cells_iterator;
-
- typedef typename DelaunayMesh<Triangulation>::labelPairHashSet
- labelPairHashSet;
-
-
-private:
-
- autoPtr<List<boundBox> > allBackgroundMeshBounds_;
-
-
- // Private Member Functions
-
- //-
- bool distributeBoundBoxes(const boundBox& bb);
-
- //-
- bool isLocal(const Vertex_handle& v) const;
-
- bool isLocal(const label localProcIndex) const;
-
- labelList overlapProcessors
- (
- const point& centre,
- const scalar radiusSqr
- ) const;
-
- bool checkProcBoundaryCell
- (
- const Cell_handle& cit,
- Map<labelList>& circumsphereOverlaps
- ) const;
-
- void findProcessorBoundaryCells
- (
- Map<labelList>& circumsphereOverlaps
- ) const;
-
- void markVerticesToRefer
- (
- const Map<labelList>& circumsphereOverlaps,
- PtrList<labelPairHashSet>& referralVertices,
- DynamicList<label>& targetProcessor,
- DynamicList<Vb>& parallelInfluenceVertices
- );
-
- label referVertices
- (
- const DynamicList<label>& targetProcessor,
- DynamicList<Vb>& parallelVertices,
- PtrList<labelPairHashSet>& referralVertices,
- labelPairHashSet& receivedVertices
- );
-
- //- Disallow default bitwise copy construct
- DistributedDelaunayMesh(const DistributedDelaunayMesh<Triangulation>&);
-
- //- Disallow default bitwise assignment
- void operator=(const DistributedDelaunayMesh<Triangulation>&);
-
-
-public:
-
- // Constructors
-
- //- Construct from components
- DistributedDelaunayMesh();
-
-
- //- Destructor
- ~DistributedDelaunayMesh();
-
-
- // Member Functions
-
- //- Build a mapDistribute for the supplied destination processor data
- static autoPtr<mapDistribute> buildMap(const List<label>& toProc);
-
- //-
- bool distribute(const boundBox& bb);
-
- autoPtr<mapDistribute> distribute
- (
- const backgroundMeshDecomposition& decomposition
- );
-
- //- Refer vertices so that the processor interfaces are consistent
- void sync(const boundBox& bb);
-
- //- Refer vertices so that the processor interfaces are consistent
- void sync
- (
- const boundBox& bb,
- PtrList<labelPairHashSet>& referralVertices,
- labelPairHashSet& receivedVertices,
- bool iterateReferral = true
- );
-
- //- Inserts points into the triangulation if the point is within
- // the circumsphere of another cell. Returns HashSet of failed
- // point insertions
- template<class PointIterator>
- labelPairHashSet rangeInsertReferredWithInfo
- (
- PointIterator begin,
- PointIterator end,
- bool printErrors = true
- );
-
-// distributeField();
-
-
- // Queries
-
-
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-//#include "DistributedDelaunayMeshI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#ifdef NoRepository
-# include "DistributedDelaunayMesh.C"
-#endif
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/Make/files b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/Make/files
deleted file mode 100644
index c6e553f64c32b3e7a61d3b26908ecfa3a9e35172..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/Make/files
+++ /dev/null
@@ -1,66 +0,0 @@
-#include CGAL_FILES
-
-conformalVoronoiMesh/indexedVertex/indexedVertexEnum.C
-conformalVoronoiMesh/indexedCell/indexedCellEnum.C
-
-conformalVoronoiMesh/conformalVoronoiMesh.C
-conformalVoronoiMesh/conformalVoronoiMeshCalcDualMesh.C
-conformalVoronoiMesh/conformalVoronoiMeshConformToSurface.C
-conformalVoronoiMesh/conformalVoronoiMeshIO.C
-conformalVoronoiMesh/conformalVoronoiMeshFeaturePoints.C
-conformalVoronoiMesh/conformalVoronoiMeshFeaturePointSpecialisations.C
-
-cvControls/cvControls.C
-
-conformationSurfaces/conformationSurfaces.C
-
-backgroundMeshDecomposition/backgroundMeshDecomposition.C
-
-cellShapeControl/cellShapeControl/cellShapeControl.C
-
-cellShapeControl/cellShapeControlMesh/cellShapeControlMesh.C
-
-cellSizeAndAlignmentControl = cellShapeControl/cellSizeAndAlignmentControl
-$(cellSizeAndAlignmentControl)/cellSizeAndAlignmentControls.C
-$(cellSizeAndAlignmentControl)/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl.C
-$(cellSizeAndAlignmentControl)/fileControl/fileControl.C
-$(cellSizeAndAlignmentControl)/searchableSurfaceControl/searchableSurfaceControl.C
-/*cellShapeControl/pQuadCoorControl/pQuadCoorControl.C*/
-
-cellShapeControl/cellAspectRatioControl/cellAspectRatioControl.C
-
-/*cellSizeControlSurfaces/cellSizeControlSurfaces.C*/
-
-cellSizeFunctions = cellSizeControlSurfaces/cellSizeFunction
-$(cellSizeFunctions)/cellSizeFunction/cellSizeFunction.C
-$(cellSizeFunctions)/uniform/uniform.C
-$(cellSizeFunctions)/uniformDistance/uniformDistance.C
-$(cellSizeFunctions)/linearDistance/linearDistance.C
-$(cellSizeFunctions)/surfaceOffsetLinearDistance/surfaceOffsetLinearDistance.C
-$(cellSizeFunctions)/linearSpatial/linearSpatial.C
-
-surfaceCellSizeFunctions = cellSizeControlSurfaces/surfaceCellSizeFunction
-$(surfaceCellSizeFunctions)/surfaceCellSizeFunction/surfaceCellSizeFunction.C
-$(surfaceCellSizeFunctions)/uniformValue/uniformValue.C
-$(surfaceCellSizeFunctions)/nonUniformField/nonUniformField.C
-
-cellSizeCalculationType = $(surfaceCellSizeFunctions)/cellSizeCalculationType
-$(cellSizeCalculationType)/cellSizeCalculationType/cellSizeCalculationType.C
-$(cellSizeCalculationType)/fieldFromFile/fieldFromFile.C
-$(cellSizeCalculationType)/automatic/automatic.C
-
-initialPointsMethod/initialPointsMethod/initialPointsMethod.C
-initialPointsMethod/uniformGrid/uniformGrid.C
-initialPointsMethod/bodyCentredCubic/bodyCentredCubic.C
-initialPointsMethod/faceCentredCubic/faceCentredCubic.C
-initialPointsMethod/pointFile/pointFile.C
-initialPointsMethod/autoDensity/autoDensity.C
-
-relaxationModel/relaxationModel/relaxationModel.C
-relaxationModel/adaptiveLinear/adaptiveLinear.C
-relaxationModel/rampHoldFall/rampHoldFall.C
-
-faceAreaWeightModel/faceAreaWeightModel/faceAreaWeightModel.C
-faceAreaWeightModel/piecewiseLinearRamp/piecewiseLinearRamp.C
-
-LIB = $(FOAM_LIBBIN)/libconformalVoronoiMesh
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/Make/options b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/Make/options
deleted file mode 100644
index 03ee51a4f6366bfdaee9196edb37451f69cfd8b4..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/Make/options
+++ /dev/null
@@ -1,33 +0,0 @@
-EXE_DEBUG = -DFULLDEBUG -g -O0
-EXE_FROUNDING_MATH = -frounding-math
-EXE_NDEBUG = -DNDEBUG
-
-CGAL_EXACT = /*-DCGAL_DONT_USE_LAZY_KERNEL*/
-CGAL_INEXACT = -DCGAL_INEXACT
-
-include $(GENERAL_RULES)/CGAL
-FFLAGS = -DCGAL_FILES='"${CGAL_ARCH_PATH}/share/files"'
-
-EXE_INC = \
- ${EXE_FROUNDING_MATH} \
- ${EXE_NDEBUG} \
- ${CGAL_INEXACT} \
- ${CGAL_INC} \
- -I$(LIB_SRC)/finiteVolume/lnInclude \
- -I$(LIB_SRC)/meshTools/lnInclude \
- -I$(LIB_SRC)/parallel/decompose/decompositionMethods/lnInclude \
- -I$(LIB_SRC)/edgeMesh/lnInclude \
- -I$(LIB_SRC)/fileFormats/lnInclude \
- -I$(LIB_SRC)/dynamicMesh/lnInclude \
- -I$(LIB_SRC)/triSurface/lnInclude \
- -I$(LIB_SRC)/sampling/lnInclude \
- -IPrintTable \
- -I../vectorTools
-
-LIB_LIBS = \
- -lmeshTools \
- -ledgeMesh \
- -lfileFormats \
- -ltriSurface \
- -ldynamicMesh \
- -lsampling
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/PrintTable/PrintTable.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/PrintTable/PrintTable.C
deleted file mode 100644
index 4b0c747f0fa66361f4d588a2e56dc1d7e22d0b90..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/PrintTable/PrintTable.C
+++ /dev/null
@@ -1,234 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "PrintTable.H"
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-template<class KeyType, class DataType>
-Foam::PrintTable<KeyType, DataType>::PrintTable()
-:
- table_(),
- title_(string::null)
-{}
-
-
-template<class KeyType, class DataType>
-Foam::PrintTable<KeyType, DataType>::PrintTable(const string& title)
-:
- table_(),
- title_(title)
-{}
-
-
-template<class KeyType, class DataType>
-Foam::PrintTable<KeyType, DataType>::PrintTable
-(
- const PrintTable<KeyType, DataType>& table
-)
-:
- table_(table.table_),
- title_(table.title_)
-{}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-template<class KeyType, class DataType>
-Foam::PrintTable<KeyType, DataType>::~PrintTable()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-template<class KeyType, class DataType>
-void Foam::PrintTable<KeyType, DataType>::print
-(
- Ostream& os,
- const bool printSum,
- const bool printAverage
-) const
-{
- HashTable<HashTable<DataType, label>, KeyType> combinedTable;
-
- List<HashTableData> procData(Pstream::nProcs(), HashTableData());
-
- procData[Pstream::myProcNo()] = table_;
-
- Pstream::gatherList(procData);
-
- if (Pstream::master())
- {
- label largestKeyLength = 6;
- label largestDataLength = 0;
-
- List<label> largestProcSize(Pstream::nProcs(), 0);
-
- forAll(procData, procI)
- {
- const HashTableData& procIData = procData[procI];
-
- for
- (
- typename HashTableData::const_iterator iter = procIData.begin();
- iter != procIData.end();
- ++iter
- )
- {
- if (!combinedTable.found(iter.key()))
- {
- combinedTable.insert
- (
- iter.key(),
- HashTable<DataType, label>()
- );
- }
-
- HashTable<DataType, label>& key = combinedTable[iter.key()];
-
- key.insert(procI, iter());
-
- for
- (
- typename HashTable<DataType, label>
- ::const_iterator dataIter = key.begin();
- dataIter != key.end();
- ++dataIter
- )
- {
- std::ostringstream buf;
- buf << dataIter();
-
- largestDataLength = max
- (
- largestDataLength,
- label(buf.str().length())
- );
- }
-
- std::ostringstream buf;
- buf << iter.key();
-
- largestKeyLength = max
- (
- largestKeyLength,
- label(buf.str().length())
- );
- }
- }
-
- os.width(largestKeyLength);
- os << nl << indent << tab << title_.c_str() << endl;
-
- os.width(largestKeyLength);
- os << indent << "Proc #";
- forAll(procData, procI)
- {
- os << tab;
- os.width(largestDataLength);
- os << procI;
- }
-
- if (printSum)
- {
- os << tab;
- os.width(largestDataLength);
- os << "Sum";
- }
-
- if (printAverage)
- {
- os << tab;
- os.width(largestDataLength);
- os << "Average";
- }
-
- os << endl;
-
- const List<KeyType>& sortedTable = combinedTable.sortedToc();
-
- forAll(sortedTable, keyI)
- {
- const HashTable<DataType, label>& procDataList
- = combinedTable[sortedTable[keyI]];
-
- os.width(largestKeyLength);
- os << indent << sortedTable[keyI];
-
- forAll(procDataList, elemI)
- {
- os << tab;
- os.width(largestDataLength);
- os << procDataList[elemI];
- }
-
- if (printSum)
- {
- DataType sum = 0;
- forAll(procDataList, elemI)
- {
- sum += procDataList[elemI];
- }
-
- os << tab;
- os.width(largestDataLength);
- os << sum;
-
- if (printAverage)
- {
- os << tab;
- os.width(largestDataLength);
- os << sum/Pstream::nProcs();
- }
- }
-
- os << endl;
- }
- }
-}
-
-
-// * * * * * * * * * * * * * * Member Operators * * * * * * * * * * * * * * //
-
-template<class KeyType, class DataType>
-void Foam::PrintTable<KeyType, DataType>::operator=
-(
- const PrintTable<KeyType, DataType>& rhs
-)
-{
- // Check for assignment to self
- if (this == &rhs)
- {
- FatalErrorIn
- (
- "Foam::PrintTable<KeyType, DataType>::operator="
- "(const Foam::PrintTable<KeyType, DataType>&)"
- ) << "Attempted assignment to self"
- << abort(FatalError);
- }
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/PrintTable/PrintTable.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/PrintTable/PrintTable.H
deleted file mode 100644
index 9f9e8b9594bbfa702fb83ce2ccdd9b0671cfd79a..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/PrintTable/PrintTable.H
+++ /dev/null
@@ -1,140 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::PrintTable
-
-Description
- Print a table in parallel, e.g.;
-
- \verbatim
- Vertex Type Information
- Proc # 0 1 2 3
- Total 145680 145278 145751 145359
- Unassigned 0 0 0 0
- nExternalFeatureEdge 883 829 828 960
- nExternalFeaturePoint 8 10 10 12
- nExternalSurface 9533 9488 9502 9482
- nFar 0 0 0 0
- nInternal 125494 125198 125642 125174
- nInternalFeatureEdge 238 241 241 240
- nInternalFeaturePoint 2 2 2 2
- nInternalNearBoundary 0 0 0 0
- nInternalSurface 9522 9510 9526 9489
- nReferred 7545 7497 7500 7587
- \endverbatim
-
-SourceFiles
- PrintTableI.H
- PrintTable.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef PrintTable_H
-#define PrintTable_H
-
-#include "HashTable.H"
-#include "Ostream.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class PrintTable Declaration
-\*---------------------------------------------------------------------------*/
-
-template<class KeyType, class DataType>
-class PrintTable
-{
- typedef HashTable<DataType, KeyType> HashTableData;
-
-
- // Private data
-
- //- Hash table holding the data
- HashTableData table_;
-
- //- Title of the table
- string title_;
-
-
- // Private Member Functions
-
- //- Disallow default bitwise assignment
- void operator=(const PrintTable<KeyType, DataType>&);
-
-
-public:
-
- // Constructors
-
- //- Null constructor
- PrintTable();
-
- //- Construct with a title
- explicit PrintTable(const string& title);
-
- //- Copy constructor
- PrintTable(const PrintTable<KeyType, DataType>& table);
-
-
- //- Destructor
- ~PrintTable();
-
-
- // Member Functions
-
- //- Add an entry (D) to the given key(K)
- void add(const KeyType& K, const DataType& D);
-
- //- Print the table
- void print
- (
- Ostream& os,
- const bool printSum = false,
- const bool printAverage = false
- ) const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "PrintTableI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#ifdef NoRepository
-# include "PrintTable.C"
-#endif
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/PrintTable/PrintTableI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/PrintTable/PrintTableI.H
deleted file mode 100644
index 6c093bc13a2d8ea6e05fa53cc452403950a65743..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/PrintTable/PrintTableI.H
+++ /dev/null
@@ -1,42 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-template<class KeyType, class DataType>
-void Foam::PrintTable<KeyType, DataType>::add
-(
- const KeyType& K,
- const DataType& D
-)
-{
- table_.set(K, D);
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecomposition.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecomposition.C
deleted file mode 100644
index 7f60b96200013c5a9e228c3f5672ead92ebb9ca0..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecomposition.C
+++ /dev/null
@@ -1,1804 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2011-2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "backgroundMeshDecomposition.H"
-#include "meshSearch.H"
-#include "conformationSurfaces.H"
-#include "zeroGradientFvPatchFields.H"
-#include "Time.H"
-#include "Random.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-defineTypeNameAndDebug(backgroundMeshDecomposition, 0);
-
-}
-
-
-// * * * * * * * * * * * * * Static Member Functions * * * * * * * * * * * * //
-
-Foam::autoPtr<Foam::mapDistribute> Foam::backgroundMeshDecomposition::buildMap
-(
- const List<label>& toProc
-)
-{
- // Determine send map
- // ~~~~~~~~~~~~~~~~~~
-
- // 1. Count
- labelList nSend(Pstream::nProcs(), 0);
-
- forAll(toProc, i)
- {
- label procI = toProc[i];
-
- nSend[procI]++;
- }
-
- // Send over how many I need to receive
- // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- labelListList sendSizes(Pstream::nProcs());
-
- sendSizes[Pstream::myProcNo()] = nSend;
-
- combineReduce(sendSizes, UPstream::listEq());
-
- // 2. Size sendMap
- labelListList sendMap(Pstream::nProcs());
-
- forAll(nSend, procI)
- {
- sendMap[procI].setSize(nSend[procI]);
-
- nSend[procI] = 0;
- }
-
- // 3. Fill sendMap
- forAll(toProc, i)
- {
- label procI = toProc[i];
-
- sendMap[procI][nSend[procI]++] = i;
- }
-
- // Determine receive map
- // ~~~~~~~~~~~~~~~~~~~~~
-
- labelListList constructMap(Pstream::nProcs());
-
- // Local transfers first
- constructMap[Pstream::myProcNo()] = identity
- (
- sendMap[Pstream::myProcNo()].size()
- );
-
- label constructSize = constructMap[Pstream::myProcNo()].size();
-
- forAll(constructMap, procI)
- {
- if (procI != Pstream::myProcNo())
- {
- label nRecv = sendSizes[procI][Pstream::myProcNo()];
-
- constructMap[procI].setSize(nRecv);
-
- for (label i = 0; i < nRecv; i++)
- {
- constructMap[procI][i] = constructSize++;
- }
- }
- }
-
- return autoPtr<mapDistribute>
- (
- new mapDistribute
- (
- constructSize,
- sendMap.xfer(),
- constructMap.xfer()
- )
- );
-}
-
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-void Foam::backgroundMeshDecomposition::initialRefinement()
-{
- volScalarField cellWeights
- (
- IOobject
- (
- "cellWeights",
- mesh_.time().timeName(),
- mesh_,
- IOobject::NO_READ,
- IOobject::NO_WRITE
- ),
- mesh_,
- dimensionedScalar("one", dimless, 1.0),
- zeroGradientFvPatchScalarField::typeName
- );
-
- const conformationSurfaces& geometry = geometryToConformTo_;
-
- decompositionMethod& decomposer = decomposerPtr_();
-
- volScalarField::InternalField& icellWeights = cellWeights.internalField();
-
-
- // For each cell in the mesh has it been determined if it is fully
- // inside, outside, or overlaps the surface
- labelList volumeStatus
- (
- mesh_.nCells(),
- searchableSurface::UNKNOWN
- );
-
- // Surface refinement
- {
- while (true)
- {
- // Determine/update the status of each cell
- forAll(volumeStatus, cellI)
- {
- if (volumeStatus[cellI] == searchableSurface::UNKNOWN)
- {
- treeBoundBox cellBb
- (
- mesh_.cells()[cellI].points
- (
- mesh_.faces(),
- mesh_.points()
- )
- );
-
- if (geometry.overlaps(cellBb))
- {
- volumeStatus[cellI] = searchableSurface::MIXED;
- }
- else if (geometry.inside(cellBb.midpoint()))
- {
- volumeStatus[cellI] = searchableSurface::INSIDE;
- }
- else
- {
- volumeStatus[cellI] =
- searchableSurface::OUTSIDE;
- }
- }
- }
-
- {
- labelList refCells = selectRefinementCells
- (
- volumeStatus,
- cellWeights
- );
-
- // Maintain 2:1 ratio
- labelList newCellsToRefine
- (
- meshCutter_.consistentRefinement
- (
- refCells,
- true // extend set
- )
- );
-
- forAll(newCellsToRefine, nCTRI)
- {
- label cellI = newCellsToRefine[nCTRI];
-
- if (volumeStatus[cellI] == searchableSurface::MIXED)
- {
- volumeStatus[cellI] = searchableSurface::UNKNOWN;
- }
-
- icellWeights[cellI] = max
- (
- 1.0,
- icellWeights[cellI]/8.0
- );
- }
-
- if (returnReduce(newCellsToRefine.size(), sumOp<label>()) == 0)
- {
- break;
- }
-
- // Mesh changing engine.
- polyTopoChange meshMod(mesh_);
-
- // Play refinement commands into mesh changer.
- meshCutter_.setRefinement(newCellsToRefine, meshMod);
-
- // Create mesh, return map from old to new mesh.
- autoPtr<mapPolyMesh> map = meshMod.changeMesh
- (
- mesh_,
- false, // inflate
- true, // syncParallel
- true, // orderCells (to reduce cell transfers)
- false // orderPoints
- );
-
- // Update fields
- mesh_.updateMesh(map);
-
- // Update numbering of cells/vertices.
- meshCutter_.updateMesh(map);
-
- {
- // Map volumeStatus
-
- const labelList& cellMap = map().cellMap();
-
- labelList newVolumeStatus(cellMap.size());
-
- forAll(cellMap, newCellI)
- {
- label oldCellI = cellMap[newCellI];
-
- if (oldCellI == -1)
- {
- newVolumeStatus[newCellI] =
- searchableSurface::UNKNOWN;
- }
- else
- {
- newVolumeStatus[newCellI] = volumeStatus[oldCellI];
- }
- }
-
- volumeStatus.transfer(newVolumeStatus);
- }
-
- Info<< " Background mesh refined from "
- << returnReduce(map().nOldCells(), sumOp<label>())
- << " to " << mesh_.globalData().nTotalCells()
- << " cells." << endl;
- }
-
- // Determine/update the status of each cell
- forAll(volumeStatus, cellI)
- {
- if (volumeStatus[cellI] == searchableSurface::UNKNOWN)
- {
- treeBoundBox cellBb
- (
- mesh_.cells()[cellI].points
- (
- mesh_.faces(),
- mesh_.points()
- )
- );
-
- if (geometry.overlaps(cellBb))
- {
- volumeStatus[cellI] = searchableSurface::MIXED;
- }
- else if (geometry.inside(cellBb.midpoint()))
- {
- volumeStatus[cellI] = searchableSurface::INSIDE;
- }
- else
- {
- volumeStatus[cellI] =
- searchableSurface::OUTSIDE;
- }
- }
- }
-
- // Hard code switch for this stage for testing
- bool removeOutsideCells = false;
-
- if (removeOutsideCells)
- {
- DynamicList<label> cellsToRemove;
-
- forAll(volumeStatus, cellI)
- {
- if (volumeStatus[cellI] == searchableSurface::OUTSIDE)
- {
- cellsToRemove.append(cellI);
- }
- }
-
- removeCells cellRemover(mesh_);
-
- // Mesh changing engine.
- polyTopoChange meshMod(mesh_);
-
- labelList exposedFaces = cellRemover.getExposedFaces
- (
- cellsToRemove
- );
-
- // Play refinement commands into mesh changer.
- cellRemover.setRefinement
- (
- cellsToRemove,
- exposedFaces,
- labelList(exposedFaces.size(), 0), // patchID dummy
- meshMod
- );
-
- // Create mesh, return map from old to new mesh.
- autoPtr<mapPolyMesh> map = meshMod.changeMesh
- (
- mesh_,
- false, // inflate
- true, // syncParallel
- true, // orderCells (to reduce cell transfers)
- false // orderPoints
- );
-
- // Update fields
- mesh_.updateMesh(map);
-
- // Update numbering of cells/vertices.
- meshCutter_.updateMesh(map);
- cellRemover.updateMesh(map);
-
- {
- // Map volumeStatus
-
- const labelList& cellMap = map().cellMap();
-
- labelList newVolumeStatus(cellMap.size());
-
- forAll(cellMap, newCellI)
- {
- label oldCellI = cellMap[newCellI];
-
- if (oldCellI == -1)
- {
- newVolumeStatus[newCellI] =
- searchableSurface::UNKNOWN;
- }
- else
- {
- newVolumeStatus[newCellI] =
- volumeStatus[oldCellI];
- }
- }
-
- volumeStatus.transfer(newVolumeStatus);
- }
-
- Info<< "Removed "
- << returnReduce(map().nOldCells(), sumOp<label>())
- - mesh_.globalData().nTotalCells()
- << " cells." << endl;
- }
-
- if (debug)
- {
- // const_cast<Time&>(mesh_.time())++;
- // Info<< "Time " << mesh_.time().timeName() << endl;
- meshCutter_.write();
- mesh_.write();
- cellWeights.write();
- }
-
- labelList newDecomp = decomposer.decompose
- (
- mesh_,
- mesh_.cellCentres(),
- icellWeights
- );
-
- fvMeshDistribute distributor(mesh_, mergeDist_);
-
- autoPtr<mapDistributePolyMesh> mapDist = distributor.distribute
- (
- newDecomp
- );
-
- meshCutter_.distribute(mapDist);
-
- mapDist().distributeCellData(volumeStatus);
-
- if (debug)
- {
- printMeshData(mesh_);
-
- // const_cast<Time&>(mesh_.time())++;
- // Info<< "Time " << mesh_.time().timeName() << endl;
- meshCutter_.write();
- mesh_.write();
- cellWeights.write();
- }
- }
- }
-
- if (debug)
- {
- // const_cast<Time&>(mesh_.time())++;
- // Info<< "Time " << mesh_.time().timeName() << endl;
- cellWeights.write();
- mesh_.write();
- }
-
- buildPatchAndTree();
-}
-
-
-void Foam::backgroundMeshDecomposition::printMeshData
-(
- const polyMesh& mesh
-) const
-{
- // Collect all data on master
-
- globalIndex globalCells(mesh.nCells());
- // labelListList patchNeiProcNo(Pstream::nProcs());
- // labelListList patchSize(Pstream::nProcs());
- // const labelList& pPatches = mesh.globalData().processorPatches();
- // patchNeiProcNo[Pstream::myProcNo()].setSize(pPatches.size());
- // patchSize[Pstream::myProcNo()].setSize(pPatches.size());
- // forAll(pPatches, i)
- // {
- // const processorPolyPatch& ppp = refCast<const processorPolyPatch>
- // (
- // mesh.boundaryMesh()[pPatches[i]]
- // );
- // patchNeiProcNo[Pstream::myProcNo()][i] = ppp.neighbProcNo();
- // patchSize[Pstream::myProcNo()][i] = ppp.size();
- // }
- // Pstream::gatherList(patchNeiProcNo);
- // Pstream::gatherList(patchSize);
-
-
- // // Print stats
-
- // globalIndex globalBoundaryFaces(mesh.nFaces()-mesh.nInternalFaces());
-
- for (label procI = 0; procI < Pstream::nProcs(); procI++)
- {
- Info<< "Processor " << procI << " "
- << "Number of cells = " << globalCells.localSize(procI)
- << endl;
-
- // label nProcFaces = 0;
-
- // const labelList& nei = patchNeiProcNo[procI];
-
- // forAll(patchNeiProcNo[procI], i)
- // {
- // Info<< " Number of faces shared with processor "
- // << patchNeiProcNo[procI][i] << " = " << patchSize[procI][i]
- // << endl;
-
- // nProcFaces += patchSize[procI][i];
- // }
-
- // Info<< " Number of processor patches = " << nei.size() << nl
- // << " Number of processor faces = " << nProcFaces << nl
- // << " Number of boundary faces = "
- // << globalBoundaryFaces.localSize(procI) << endl;
- }
-}
-
-
-bool Foam::backgroundMeshDecomposition::refineCell
-(
- label cellI,
- label volType,
- scalar& weightEstimate
-) const
-{
- // Sample the box to find an estimate of the min size, and a volume
- // estimate when overlapping == true.
-
- const conformationSurfaces& geometry = geometryToConformTo_;
-
- treeBoundBox cellBb
- (
- mesh_.cells()[cellI].points
- (
- mesh_.faces(),
- mesh_.points()
- )
- );
-
- weightEstimate = 1.0;
-
- if (volType == searchableSurface::MIXED)
- {
-// // Assess the cell size at the nearest point on the surface for the
-// // MIXED cells, if the cell is large with respect to the cell size,
-// // then refine it.
-//
-// pointField samplePoints
-// (
-// volRes_*volRes_*volRes_,
-// vector::zero
-// );
-//
-// // scalar sampleVol = cellBb.volume()/samplePoints.size();
-//
-// vector delta = cellBb.span()/volRes_;
-//
-// label pI = 0;
-//
-// for (label i = 0; i < volRes_; i++)
-// {
-// for (label j = 0; j < volRes_; j++)
-// {
-// for (label k = 0; k < volRes_; k++)
-// {
-// samplePoints[pI++] =
-// cellBb.min()
-// + vector
-// (
-// delta.x()*(i + 0.5),
-// delta.y()*(j + 0.5),
-// delta.z()*(k + 0.5)
-// );
-// }
-// }
-// }
-//
-// List<pointIndexHit> hitInfo;
-// labelList hitSurfaces;
-//
-// geometry.findSurfaceNearest
-// (
-// samplePoints,
-// scalarField(samplePoints.size(), sqr(GREAT)),
-// hitInfo,
-// hitSurfaces
-// );
-//
-// // weightEstimate = 0.0;
-//
-// scalar minCellSize = GREAT;
-//
-// forAll(samplePoints, i)
-// {
-// scalar s = cellShapeControl_.cellSize
-// (
-// hitInfo[i].hitPoint()
-// );
-//
-// // Info<< "cellBb.midpoint() " << cellBb.midpoint() << nl
-// // << samplePoints[i] << nl
-// // << hitInfo[i] << nl
-// // << "cellBb.span() " << cellBb.span() << nl
-// // << "cellBb.mag() " << cellBb.mag() << nl
-// // << s << endl;
-//
-// if (s < minCellSize)
-// {
-// minCellSize = max(s, minCellSizeLimit_);
-// }
-//
-// // Estimate the number of points in the cell by the surface size,
-// // this is likely to be too small, so reduce.
-// // weightEstimate += sampleVol/pow3(s);
-// }
-//
-// if (sqr(spanScale_)*sqr(minCellSize) < magSqr(cellBb.span()))
-// {
-// return true;
-// }
- }
- else if (volType == searchableSurface::INSIDE)
- {
- // scalar s = cvMesh_.cellShapeControl_.cellSize(cellBb.midpoint());
-
- // Estimate the number of points in the cell by the size at the cell
- // midpoint
- // weightEstimate = cellBb.volume()/pow3(s);
-
- return false;
- }
- // else
- // {
- // weightEstimate = 1.0;
-
- // return false;
- // }
-
- return false;
-}
-
-
-Foam::labelList Foam::backgroundMeshDecomposition::selectRefinementCells
-(
- labelList& volumeStatus,
- volScalarField& cellWeights
-) const
-{
- volScalarField::InternalField& icellWeights = cellWeights.internalField();
-
- labelHashSet cellsToRefine;
-
- // Determine/update the status of each cell
- forAll(volumeStatus, cellI)
- {
- if (volumeStatus[cellI] == searchableSurface::MIXED)
- {
- if (meshCutter_.cellLevel()[cellI] < minLevels_)
- {
- cellsToRefine.insert(cellI);
- }
- }
-
- if (volumeStatus[cellI] != searchableSurface::OUTSIDE)
- {
- if
- (
- refineCell
- (
- cellI,
- volumeStatus[cellI],
- icellWeights[cellI]
- )
- )
- {
- cellsToRefine.insert(cellI);
- }
- }
- }
-
- return cellsToRefine.toc();
-}
-
-
-void Foam::backgroundMeshDecomposition::buildPatchAndTree()
-{
- primitivePatch tmpBoundaryFaces
- (
- SubList<face>
- (
- mesh_.faces(),
- mesh_.nFaces() - mesh_.nInternalFaces(),
- mesh_.nInternalFaces()
- ),
- mesh_.points()
- );
-
- boundaryFacesPtr_.reset
- (
- new bPatch
- (
- tmpBoundaryFaces.localFaces(),
- tmpBoundaryFaces.localPoints()
- )
- );
-
- // Overall bb
- treeBoundBox overallBb(boundaryFacesPtr_().localPoints());
-
- Random& rnd = rndGen_;
-
- bFTreePtr_.reset
- (
- new indexedOctree<treeDataBPatch>
- (
- treeDataBPatch(false, boundaryFacesPtr_()),
- overallBb.extend(rnd, 1e-4),
- 10, // maxLevel
- 10, // leafSize
- 3.0 // duplicity
- )
- );
-
- // Give the bounds of every processor to every other processor
- allBackgroundMeshBounds_[Pstream::myProcNo()] = overallBb;
-
- Pstream::gatherList(allBackgroundMeshBounds_);
- Pstream::scatterList(allBackgroundMeshBounds_);
-
- point bbMin(GREAT, GREAT, GREAT);
- point bbMax(-GREAT, -GREAT, -GREAT);
-
- forAll(allBackgroundMeshBounds_, procI)
- {
- bbMin = min(bbMin, allBackgroundMeshBounds_[procI].min());
- bbMax = max(bbMax, allBackgroundMeshBounds_[procI].max());
- }
-
- globalBackgroundBounds_ = treeBoundBox(bbMin, bbMax);
-
- if (false)
- {
- OFstream fStr
- (
- mesh_.time().path()
- /"backgroundMeshDecomposition_proc_"
- + name(Pstream::myProcNo())
- + "_boundaryFaces.obj"
- );
-
- const faceList& faces = boundaryFacesPtr_().localFaces();
- const List<point>& points = boundaryFacesPtr_().localPoints();
-
- Map<label> foamToObj(points.size());
-
- label vertI = 0;
-
- forAll(faces, i)
- {
- const face& f = faces[i];
-
- forAll(f, fPI)
- {
- if (foamToObj.insert(f[fPI], vertI))
- {
- meshTools::writeOBJ(fStr, points[f[fPI]]);
- vertI++;
- }
- }
-
- fStr<< 'f';
-
- forAll(f, fPI)
- {
- fStr<< ' ' << foamToObj[f[fPI]] + 1;
- }
-
- fStr<< nl;
- }
- }
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::backgroundMeshDecomposition::backgroundMeshDecomposition
-(
- const Time& runTime,
- Random& rndGen,
- const conformationSurfaces& geometryToConformTo,
- const dictionary& coeffsDict
-)
-:
- runTime_(runTime),
- geometryToConformTo_(geometryToConformTo),
- rndGen_(rndGen),
- mesh_
- (
- IOobject
- (
- fvMesh::defaultRegion,
- runTime_.timeName(),
- runTime_,
- IOobject::MUST_READ
- )
- ),
- meshCutter_
- (
- mesh_,
- labelList(mesh_.nCells(), 0),
- labelList(mesh_.nPoints(), 0)
- ),
- boundaryFacesPtr_(),
- bFTreePtr_(),
- allBackgroundMeshBounds_(Pstream::nProcs()),
- globalBackgroundBounds_(),
- decomposeDict_
- (
- IOobject
- (
- "decomposeParDict",
- runTime_.system(),
- runTime_,
- IOobject::MUST_READ_IF_MODIFIED,
- IOobject::NO_WRITE
- )
- ),
- decomposerPtr_(decompositionMethod::New(decomposeDict_)),
- mergeDist_(1e-6*mesh_.bounds().mag()),
- spanScale_(readScalar(coeffsDict.lookup("spanScale"))),
- minCellSizeLimit_
- (
- coeffsDict.lookupOrDefault<scalar>("minCellSizeLimit", 0.0)
- ),
- minLevels_(readLabel(coeffsDict.lookup("minLevels"))),
- volRes_(readLabel(coeffsDict.lookup("sampleResolution"))),
- maxCellWeightCoeff_(readScalar(coeffsDict.lookup("maxCellWeightCoeff")))
-{
- if (!Pstream::parRun())
- {
- FatalErrorIn
- (
- "Foam::backgroundMeshDecomposition::backgroundMeshDecomposition"
- "("
- "const dictionary& coeffsDict, "
- "const conformalVoronoiMesh& cvMesh"
- ")"
- )
- << "This cannot be used when not running in parallel."
- << exit(FatalError);
- }
-
- if (!decomposerPtr_().parallelAware())
- {
- FatalErrorIn
- (
- "void Foam::backgroundMeshDecomposition::initialRefinement() const"
- )
- << "You have selected decomposition method "
- << decomposerPtr_().typeName
- << " which is not parallel aware." << endl
- << exit(FatalError);
- }
-
- Info<< nl << "Building initial background mesh decomposition" << endl;
-
- initialRefinement();
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::backgroundMeshDecomposition::~backgroundMeshDecomposition()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-Foam::autoPtr<Foam::mapDistributePolyMesh>
-Foam::backgroundMeshDecomposition::distribute
-(
- volScalarField& cellWeights
-)
-{
- if (debug)
- {
- // const_cast<Time&>(mesh_.time())++;
- // Info<< "Time " << mesh_.time().timeName() << endl;
- cellWeights.write();
- mesh_.write();
- }
-
- volScalarField::InternalField& icellWeights = cellWeights.internalField();
-
- while (true)
- {
- // Refine large cells if necessary
-
- label nOccupiedCells = 0;
-
- forAll(icellWeights, cI)
- {
- if (icellWeights[cI] > 1 - SMALL)
- {
- nOccupiedCells++;
- }
- }
-
- // Only look at occupied cells, as there is a possibility of runaway
- // refinement if the number of cells grows too fast. Also, clip the
- // minimum cellWeightLimit at maxCellWeightCoeff_
-
- scalar cellWeightLimit = max
- (
- maxCellWeightCoeff_
- *sum(cellWeights).value()
- /returnReduce(nOccupiedCells, sumOp<label>()),
- maxCellWeightCoeff_
- );
-
- if (debug)
- {
- Info<< " cellWeightLimit " << cellWeightLimit << endl;
-
- Pout<< " sum(cellWeights) " << sum(cellWeights.internalField())
- << " max(cellWeights) " << max(cellWeights.internalField())
- << endl;
- }
-
- labelHashSet cellsToRefine;
-
- forAll(icellWeights, cWI)
- {
- if (icellWeights[cWI] > cellWeightLimit)
- {
- cellsToRefine.insert(cWI);
- }
- }
-
- if (returnReduce(cellsToRefine.size(), sumOp<label>()) == 0)
- {
- break;
- }
-
- // Maintain 2:1 ratio
- labelList newCellsToRefine
- (
- meshCutter_.consistentRefinement
- (
- cellsToRefine.toc(),
- true // extend set
- )
- );
-
- if (debug && !cellsToRefine.empty())
- {
- Pout<< " cellWeights too large in " << cellsToRefine.size()
- << " cells" << endl;
- }
-
- forAll(newCellsToRefine, nCTRI)
- {
- label cellI = newCellsToRefine[nCTRI];
-
- icellWeights[cellI] /= 8.0;
- }
-
- // Mesh changing engine.
- polyTopoChange meshMod(mesh_);
-
- // Play refinement commands into mesh changer.
- meshCutter_.setRefinement(newCellsToRefine, meshMod);
-
- // Create mesh, return map from old to new mesh.
- autoPtr<mapPolyMesh> map = meshMod.changeMesh
- (
- mesh_,
- false, // inflate
- true, // syncParallel
- true, // orderCells (to reduce cell motion)
- false // orderPoints
- );
-
- // Update fields
- mesh_.updateMesh(map);
-
- // Update numbering of cells/vertices.
- meshCutter_.updateMesh(map);
-
- Info<< " Background mesh refined from "
- << returnReduce(map().nOldCells(), sumOp<label>())
- << " to " << mesh_.globalData().nTotalCells()
- << " cells." << endl;
-
- if (debug)
- {
- // const_cast<Time&>(mesh_.time())++;
- // Info<< "Time " << mesh_.time().timeName() << endl;
- cellWeights.write();
- mesh_.write();
- }
- }
-
- if (debug)
- {
- printMeshData(mesh_);
-
- Pout<< " Pre distribute sum(cellWeights) "
- << sum(icellWeights)
- << " max(cellWeights) "
- << max(icellWeights)
- << endl;
- }
-
- labelList newDecomp = decomposerPtr_().decompose
- (
- mesh_,
- mesh_.cellCentres(),
- icellWeights
- );
-
- Info<< " Redistributing background mesh cells" << endl;
-
- fvMeshDistribute distributor(mesh_, mergeDist_);
-
- autoPtr<mapDistributePolyMesh> mapDist = distributor.distribute(newDecomp);
-
- meshCutter_.distribute(mapDist);
-
- if (debug)
- {
- printMeshData(mesh_);
-
- Pout<< " Post distribute sum(cellWeights) "
- << sum(icellWeights)
- << " max(cellWeights) "
- << max(icellWeights)
- << endl;
-
- // const_cast<Time&>(mesh_.time())++;
- // Info<< "Time " << mesh_.time().timeName() << endl;
- mesh_.write();
- cellWeights.write();
- }
-
- buildPatchAndTree();
-
- return mapDist;
-}
-
-
-Foam::autoPtr<Foam::mapDistribute>
-Foam::backgroundMeshDecomposition::distributePoints
-(
- List<point>& points
-) const
-{
- labelList toProc(processorPosition(points));
-
- autoPtr<mapDistribute> map(buildMap(toProc));
-
- map().distribute(points);
-
- return map;
-}
-
-
-bool Foam::backgroundMeshDecomposition::positionOnThisProcessor
-(
- const point& pt
-) const
-{
-// return bFTreePtr_().findAnyOverlap(pt, 0.0);
-
- return
- (
- bFTreePtr_().getVolumeType(pt)
- == indexedOctree<treeDataBPatch>::INSIDE
- );
-}
-
-
-Foam::boolList Foam::backgroundMeshDecomposition::positionOnThisProcessor
-(
- const List<point>& pts
-) const
-{
- boolList posProc(pts.size(), true);
-
- forAll(pts, pI)
- {
- posProc[pI] = positionOnThisProcessor(pts[pI]);
- }
-
- return posProc;
-}
-
-
-bool Foam::backgroundMeshDecomposition::overlapsThisProcessor
-(
- const treeBoundBox& box
-) const
-{
-// return !procBounds().contains(box);
- return !bFTreePtr_().findBox(box).empty();
-}
-
-
-bool Foam::backgroundMeshDecomposition::overlapsThisProcessor
-(
- const point& centre,
- const scalar radiusSqr
-) const
-{
- //return bFTreePtr_().findAnyOverlap(centre, radiusSqr);
-
- return bFTreePtr_().findNearest(centre, radiusSqr).hit();
-}
-
-
-Foam::pointIndexHit Foam::backgroundMeshDecomposition::findLine
-(
- const point& start,
- const point& end
-) const
-{
- return bFTreePtr_().findLine(start, end);
-}
-
-
-Foam::pointIndexHit Foam::backgroundMeshDecomposition::findLineAny
-(
- const point& start,
- const point& end
-) const
-{
- return bFTreePtr_().findLineAny(start, end);
-}
-
-
-Foam::labelList Foam::backgroundMeshDecomposition::processorPosition
-(
- const List<point>& pts
-) const
-{
- DynamicList<label> toCandidateProc;
- DynamicList<point> testPoints;
- labelList ptBlockStart(pts.size(), -1);
- labelList ptBlockSize(pts.size(), -1);
-
- label nTotalCandidates = 0;
-
- forAll(pts, pI)
- {
- const point& pt = pts[pI];
-
- label nCandidates = 0;
-
- forAll(allBackgroundMeshBounds_, procI)
- {
- if (allBackgroundMeshBounds_[procI].contains(pt))
- {
- toCandidateProc.append(procI);
- testPoints.append(pt);
-
- nCandidates++;
- }
- }
-
- ptBlockStart[pI] = nTotalCandidates;
- ptBlockSize[pI] = nCandidates;
-
- nTotalCandidates += nCandidates;
- }
-
- // Needed for reverseDistribute
- label preDistributionToCandidateProcSize = toCandidateProc.size();
-
- autoPtr<mapDistribute> map(buildMap(toCandidateProc));
-
- map().distribute(testPoints);
-
- List<bool> pointOnCandidate(testPoints.size(), false);
-
- // Test candidate points on candidate processors
- forAll(testPoints, tPI)
- {
- pointOnCandidate[tPI] = positionOnThisProcessor(testPoints[tPI]);
- }
-
- map().reverseDistribute
- (
- preDistributionToCandidateProcSize,
- pointOnCandidate
- );
-
- labelList ptProc(pts.size(), -1);
-
- DynamicList<label> failedPointIndices;
- DynamicList<point> failedPoints;
-
- forAll(pts, pI)
- {
- // Extract the sub list of results for this point
-
- SubList<bool> ptProcResults
- (
- pointOnCandidate,
- ptBlockSize[pI],
- ptBlockStart[pI]
- );
-
- forAll(ptProcResults, pPRI)
- {
- if (ptProcResults[pPRI])
- {
- ptProc[pI] = toCandidateProc[ptBlockStart[pI] + pPRI];
-
- break;
- }
- }
-
- if (ptProc[pI] < 0)
- {
- if (!globalBackgroundBounds_.contains(pts[pI]))
- {
- FatalErrorIn
- (
- "Foam::labelList"
- "Foam::backgroundMeshDecomposition::processorPosition"
- "("
- "const List<point>&"
- ") const"
- )
- << "The position " << pts[pI]
- << " is not in any part of the background mesh "
- << globalBackgroundBounds_ << endl
- << "A background mesh with a wider margin around "
- << "the geometry may help."
- << exit(FatalError);
- }
-
- if (debug)
- {
- WarningIn
- (
- "Foam::labelList"
- "Foam::backgroundMeshDecomposition::processorPosition"
- "("
- "const List<point>&"
- ") const"
- ) << "The position " << pts[pI]
- << " was not found in the background mesh "
- << globalBackgroundBounds_ << ", finding nearest."
- << endl;
- }
-
- failedPointIndices.append(pI);
- failedPoints.append(pts[pI]);
- }
- }
-
- labelList ptNearestProc(processorNearestPosition(failedPoints));
-
- forAll(failedPoints, fPI)
- {
- label pI = failedPointIndices[fPI];
-
- ptProc[pI] = ptNearestProc[fPI];
- }
-
- return ptProc;
-}
-
-
-Foam::labelList Foam::backgroundMeshDecomposition::processorNearestPosition
-(
- const List<point>& pts
-) const
-{
- DynamicList<label> toCandidateProc;
- DynamicList<point> testPoints;
- labelList ptBlockStart(pts.size(), -1);
- labelList ptBlockSize(pts.size(), -1);
-
- label nTotalCandidates = 0;
-
- forAll(pts, pI)
- {
- const point& pt = pts[pI];
-
- label nCandidates = 0;
-
- forAll(allBackgroundMeshBounds_, procI)
- {
- // Candidate points may lie just outside a processor box, increase
- // test range by using overlaps rather than contains
- if (allBackgroundMeshBounds_[procI].overlaps(pt, sqr(SMALL*100)))
- {
- toCandidateProc.append(procI);
- testPoints.append(pt);
-
- nCandidates++;
- }
- }
-
- ptBlockStart[pI] = nTotalCandidates;
- ptBlockSize[pI] = nCandidates;
-
- nTotalCandidates += nCandidates;
- }
-
- // Needed for reverseDistribute
- label preDistributionToCandidateProcSize = toCandidateProc.size();
-
- autoPtr<mapDistribute> map(buildMap(toCandidateProc));
-
- map().distribute(testPoints);
-
- List<scalar> distanceSqrToCandidate(testPoints.size(), sqr(GREAT));
-
- // Test candidate points on candidate processors
- forAll(testPoints, tPI)
- {
- pointIndexHit info = bFTreePtr_().findNearest
- (
- testPoints[tPI],
- sqr(GREAT)
- );
-
- if (info.hit())
- {
- distanceSqrToCandidate[tPI] = magSqr
- (
- testPoints[tPI] - info.hitPoint()
- );
- }
- }
-
- map().reverseDistribute
- (
- preDistributionToCandidateProcSize,
- distanceSqrToCandidate
- );
-
- labelList ptNearestProc(pts.size(), -1);
-
- forAll(pts, pI)
- {
- // Extract the sub list of results for this point
-
- SubList<scalar> ptNearestProcResults
- (
- distanceSqrToCandidate,
- ptBlockSize[pI],
- ptBlockStart[pI]
- );
-
- scalar nearestProcDistSqr = GREAT;
-
- forAll(ptNearestProcResults, pPRI)
- {
- if (ptNearestProcResults[pPRI] < nearestProcDistSqr)
- {
- nearestProcDistSqr = ptNearestProcResults[pPRI];
-
- ptNearestProc[pI] = toCandidateProc[ptBlockStart[pI] + pPRI];
- }
- }
-
- if (debug)
- {
- Pout<< pts[pI] << " nearestProcDistSqr " << nearestProcDistSqr
- << " ptNearestProc[pI] " << ptNearestProc[pI] << endl;
- }
-
- if (ptNearestProc[pI] < 0)
- {
- FatalErrorIn
- (
- "Foam::labelList"
- "Foam::backgroundMeshDecomposition::processorNearestPosition"
- "("
- "const List<point>& pts"
- ") const"
- )
- << "The position " << pts[pI]
- << " did not find a nearest point on the background mesh."
- << exit(FatalError);
- }
- }
-
- return ptNearestProc;
-}
-
-
-
-Foam::List<Foam::List<Foam::pointIndexHit> >
-Foam::backgroundMeshDecomposition::intersectsProcessors
-(
- const List<point>& starts,
- const List<point>& ends,
- bool includeOwnProcessor
-) const
-{
- DynamicList<label> toCandidateProc;
- DynamicList<point> testStarts;
- DynamicList<point> testEnds;
- labelList segmentBlockStart(starts.size(), -1);
- labelList segmentBlockSize(starts.size(), -1);
-
- label nTotalCandidates = 0;
-
- forAll(starts, sI)
- {
- const point& s = starts[sI];
- const point& e = ends[sI];
-
- // Dummy point for treeBoundBox::intersects
- point p(vector::zero);
-
- label nCandidates = 0;
-
- forAll(allBackgroundMeshBounds_, procI)
- {
- // It is assumed that the sphere in question overlaps the source
- // processor, so don't test it, unless includeOwnProcessor is true
- if
- (
- (includeOwnProcessor || procI != Pstream::myProcNo())
- && allBackgroundMeshBounds_[procI].intersects(s, e, p)
- )
- {
- toCandidateProc.append(procI);
- testStarts.append(s);
- testEnds.append(e);
-
- nCandidates++;
- }
- }
-
- segmentBlockStart[sI] = nTotalCandidates;
- segmentBlockSize[sI] = nCandidates;
-
- nTotalCandidates += nCandidates;
- }
-
- // Needed for reverseDistribute
- label preDistributionToCandidateProcSize = toCandidateProc.size();
-
- autoPtr<mapDistribute> map(buildMap(toCandidateProc));
-
- map().distribute(testStarts);
- map().distribute(testEnds);
-
- List<pointIndexHit> segmentIntersectsCandidate(testStarts.size());
-
- // Test candidate segments on candidate processors
- forAll(testStarts, sI)
- {
- const point& s = testStarts[sI];
- const point& e = testEnds[sI];
-
- // If the sphere finds some elements of the patch, then it overlaps
- segmentIntersectsCandidate[sI] = bFTreePtr_().findLine(s, e);
- }
-
- map().reverseDistribute
- (
- preDistributionToCandidateProcSize,
- segmentIntersectsCandidate
- );
-
- List<List<pointIndexHit> > segmentHitProcs(starts.size());
-
- // Working storage for assessing processors
- DynamicList<pointIndexHit> tmpProcHits;
-
- forAll(starts, sI)
- {
- tmpProcHits.clear();
-
- // Extract the sub list of results for this point
-
- SubList<pointIndexHit> segmentProcResults
- (
- segmentIntersectsCandidate,
- segmentBlockSize[sI],
- segmentBlockStart[sI]
- );
-
- forAll(segmentProcResults, sPRI)
- {
- if (segmentProcResults[sPRI].hit())
- {
- tmpProcHits.append(segmentProcResults[sPRI]);
-
- tmpProcHits.last().setIndex
- (
- toCandidateProc[segmentBlockStart[sI] + sPRI]
- );
- }
- }
-
- segmentHitProcs[sI] = tmpProcHits;
- }
-
- return segmentHitProcs;
-}
-
-
-bool Foam::backgroundMeshDecomposition::overlapsOtherProcessors
-(
- const point& centre,
- const scalar& radiusSqr
-) const
-{
- forAll(allBackgroundMeshBounds_, procI)
- {
- if (bFTreePtr_().findNearest(centre, radiusSqr).hit())
- {
- return true;
- }
- }
-
- return false;
-}
-
-
-Foam::labelList Foam::backgroundMeshDecomposition::overlapProcessors
-(
- const point& centre,
- const scalar radiusSqr
-) const
-{
- DynamicList<label> toProc(Pstream::nProcs());
-
- forAll(allBackgroundMeshBounds_, procI)
- {
- // Test against the bounding box of the processor
- if
- (
- procI != Pstream::myProcNo()
- && allBackgroundMeshBounds_[procI].overlaps(centre, radiusSqr)
- )
- {
- // Expensive test
-// if (bFTreePtr_().findNearest(centre, radiusSqr).hit())
- {
- toProc.append(procI);
- }
- }
- }
-
- return toProc;
-}
-
-
-//Foam::labelListList Foam::backgroundMeshDecomposition::overlapsProcessors
-//(
-// const List<point>& centres,
-// const List<scalar>& radiusSqrs,
-// const Delaunay& T,
-// bool includeOwnProcessor
-//) const
-//{
-// DynamicList<label> toCandidateProc;
-// DynamicList<point> testCentres;
-// DynamicList<scalar> testRadiusSqrs;
-// labelList sphereBlockStart(centres.size(), -1);
-// labelList sphereBlockSize(centres.size(), -1);
-//
-// label nTotalCandidates = 0;
-//
-// forAll(centres, sI)
-// {
-// const point& c = centres[sI];
-// scalar rSqr = radiusSqrs[sI];
-//
-// label nCandidates = 0;
-//
-// forAll(allBackgroundMeshBounds_, procI)
-// {
-// // It is assumed that the sphere in question overlaps the source
-// // processor, so don't test it, unless includeOwnProcessor is true
-// if
-// (
-// (includeOwnProcessor || procI != Pstream::myProcNo())
-// && allBackgroundMeshBounds_[procI].overlaps(c, rSqr)
-// )
-// {
-// if (bFTreePtr_().findNearest(c, rSqr).hit())
-// {
-// toCandidateProc.append(procI);
-// testCentres.append(c);
-// testRadiusSqrs.append(rSqr);
-//
-// nCandidates++;
-// }
-// }
-// }
-//
-// sphereBlockStart[sI] = nTotalCandidates;
-// sphereBlockSize[sI] = nCandidates;
-//
-// nTotalCandidates += nCandidates;
-// }
-//
-// // Needed for reverseDistribute
-//// label preDistributionToCandidateProcSize = toCandidateProc.size();
-////
-//// autoPtr<mapDistribute> map(buildMap(toCandidateProc));
-////
-//// map().distribute(testCentres);
-//// map().distribute(testRadiusSqrs);
-//
-// // @todo This is faster, but results in more vertices being referred
-// boolList sphereOverlapsCandidate(testCentres.size(), true);
-//// boolList sphereOverlapsCandidate(testCentres.size(), false);
-////
-//// // Test candidate spheres on candidate processors
-//// forAll(testCentres, sI)
-//// {
-//// const point& c = testCentres[sI];
-//// const scalar rSqr = testRadiusSqrs[sI];
-////
-//// const bool flagOverlap = bFTreePtr_().findNearest(c, rSqr).hit();
-////
-//// if (flagOverlap)
-//// {
-//// //if (vertexOctree.findAnyOverlap(c, rSqr))
-////// if (vertexOctree.findNearest(c, rSqr*1.001).hit())
-////// {
-////// sphereOverlapsCandidate[sI] = true;
-////// }
-////
-////// Vertex_handle nearestVertex = T.nearest_vertex
-////// (
-////// toPoint<Point>(c)
-////// );
-//////
-////// const scalar distSqr = magSqr
-////// (
-////// topoint(nearestVertex->point()) - c
-////// );
-//////
-////// if (distSqr <= rSqr)
-////// {
-////// // If the sphere finds a nearest element of the patch,
-////// // then it overlaps
-//// sphereOverlapsCandidate[sI] = true;
-////// }
-//// }
-//// }
-//
-//// map().reverseDistribute
-//// (
-//// preDistributionToCandidateProcSize,
-//// sphereOverlapsCandidate
-//// );
-//
-// labelListList sphereProcs(centres.size());
-//
-// // Working storage for assessing processors
-// DynamicList<label> tmpProcs;
-//
-// forAll(centres, sI)
-// {
-// tmpProcs.clear();
-//
-// // Extract the sub list of results for this point
-//
-// SubList<bool> sphereProcResults
-// (
-// sphereOverlapsCandidate,
-// sphereBlockSize[sI],
-// sphereBlockStart[sI]
-// );
-//
-// forAll(sphereProcResults, sPRI)
-// {
-// if (sphereProcResults[sPRI])
-// {
-// tmpProcs.append(toCandidateProc[sphereBlockStart[sI] + sPRI]);
-// }
-// }
-//
-// sphereProcs[sI] = tmpProcs;
-// }
-//
-// return sphereProcs;
-//}
-
-
-//Foam::labelListList Foam::backgroundMeshDecomposition::overlapProcessors
-//(
-// const point& cc,
-// const scalar rSqr
-//) const
-//{
-// DynamicList<label> toCandidateProc;
-// label sphereBlockStart(-1);
-// label sphereBlockSize(-1);
-//
-// label nCandidates = 0;
-//
-// forAll(allBackgroundMeshBounds_, procI)
-// {
-// // It is assumed that the sphere in question overlaps the source
-// // processor, so don't test it, unless includeOwnProcessor is true
-// if
-// (
-// (includeOwnProcessor || procI != Pstream::myProcNo())
-// && allBackgroundMeshBounds_[procI].overlaps(cc, rSqr)
-// )
-// {
-// toCandidateProc.append(procI);
-//
-// nCandidates++;
-// }
-// }
-//
-// sphereBlockSize = nCandidates;
-// nTotalCandidates += nCandidates;
-//
-// // Needed for reverseDistribute
-// label preDistributionToCandidateProcSize = toCandidateProc.size();
-//
-// autoPtr<mapDistribute> map(buildMap(toCandidateProc));
-//
-// map().distribute(testCentres);
-// map().distribute(testRadiusSqrs);
-//
-// // @todo This is faster, but results in more vertices being referred
-//// boolList sphereOverlapsCandidate(testCentres.size(), true);
-// boolList sphereOverlapsCandidate(testCentres.size(), false);
-//
-// // Test candidate spheres on candidate processors
-// forAll(testCentres, sI)
-// {
-// const point& c = testCentres[sI];
-// const scalar rSqr = testRadiusSqrs[sI];
-//
-// const bool flagOverlap = bFTreePtr_().findNearest(c, rSqr).hit();
-//
-// if (flagOverlap)
-// {
-// //if (vertexOctree.findAnyOverlap(c, rSqr))
-//// if (vertexOctree.findNearest(c, rSqr*1.001).hit())
-//// {
-//// sphereOverlapsCandidate[sI] = true;
-//// }
-//
-//// Vertex_handle nearestVertex = T.nearest_vertex
-//// (
-//// toPoint<Point>(c)
-//// );
-////
-//// const scalar distSqr = magSqr
-//// (
-//// topoint(nearestVertex->point()) - c
-//// );
-////
-//// if (distSqr <= rSqr)
-//// {
-//// // If the sphere finds a nearest element of the patch, then
-//// // it overlaps
-// sphereOverlapsCandidate[sI] = true;
-//// }
-// }
-// }
-//
-// map().reverseDistribute
-// (
-// preDistributionToCandidateProcSize,
-// sphereOverlapsCandidate
-// );
-//
-// labelListList sphereProcs(centres.size());
-//
-// // Working storage for assessing processors
-// DynamicList<label> tmpProcs;
-//
-// forAll(centres, sI)
-// {
-// tmpProcs.clear();
-//
-// // Extract the sub list of results for this point
-//
-// SubList<bool> sphereProcResults
-// (
-// sphereOverlapsCandidate,
-// sphereBlockSize[sI],
-// sphereBlockStart[sI]
-// );
-//
-// forAll(sphereProcResults, sPRI)
-// {
-// if (sphereProcResults[sPRI])
-// {
-// tmpProcs.append(toCandidateProc[sphereBlockStart[sI] + sPRI]);
-// }
-// }
-//
-// sphereProcs[sI] = tmpProcs;
-// }
-//
-// return sphereProcs;
-//}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecomposition.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecomposition.H
deleted file mode 100644
index 73aa2fee74a86d32fb81360eec0b602b2aa7ed58..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecomposition.H
+++ /dev/null
@@ -1,340 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2011-2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::backgroundMeshDecomposition
-
-Description
- Store a background polyMesh to use for the decomposition of space and
- queries for parallel conformalVoronoiMesh.
-
- The requirements are:
-
- + To have a decomposition of space which can quickly interrogate an
- arbitrary location from any processor to reliably and unambiguously
- determine which processor owns the space that the point is in, i.e. as
- the vertices move, or need inserted as part of the surface conformation,
- send them to the correct proc.
-
- + To be able to be dynamically built, refined and redistributed to other
- procs the partitioning as the meshing progresses to balance the load.
-
- + To be able to query whether a sphere (the circumsphere of a Delaunay tet)
- overlaps any part of the space defined by the structure, and whether a
- ray (Voronoi edge) penetrates any part of the space defined by the
- structure, this is what determines if points get referred to a processor.
-
-SourceFiles
- backgroundMeshDecompositionI.H
- backgroundMeshDecomposition.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef backgroundMeshDecomposition_H
-#define backgroundMeshDecomposition_H
-
-#include "fvMesh.H"
-#include "hexRef8.H"
-#include "cellSet.H"
-#include "meshTools.H"
-#include "polyTopoChange.H"
-#include "mapPolyMesh.H"
-#include "decompositionMethod.H"
-#include "fvMeshDistribute.H"
-#include "removeCells.H"
-#include "mapDistributePolyMesh.H"
-#include "globalIndex.H"
-#include "treeBoundBox.H"
-#include "primitivePatch.H"
-#include "face.H"
-#include "labelList.H"
-#include "pointField.H"
-#include "indexedOctree.H"
-#include "treeDataPrimitivePatch.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-typedef PrimitivePatch<face, List, const pointField, point> bPatch;
-typedef treeDataPrimitivePatch<bPatch> treeDataBPatch;
-
-class Time;
-class Random;
-class conformationSurfaces;
-
-/*---------------------------------------------------------------------------*\
- Class backgroundMeshDecomposition Declaration
-\*---------------------------------------------------------------------------*/
-
-class backgroundMeshDecomposition
-{
- // Private data
-
- //- Method details dictionary
- //dictionary coeffsDict_;
-
- //- Reference to runtime
- const Time& runTime_;
-
- //- Reference to surface
- const conformationSurfaces& geometryToConformTo_;
-
- //- Random number generator
- Random& rndGen_;
-
- //- Mesh stored on for this processor, specifiying the domain that it
- // is responsible for.
- fvMesh mesh_;
-
- //- Refinement object
- hexRef8 meshCutter_;
-
- //- Patch containing an independent representation of the surface of the
- // mesh of this processor
- autoPtr<bPatch> boundaryFacesPtr_;
-
- //- Search tree for the boundaryFaces_ patch
- autoPtr<indexedOctree<treeDataBPatch> > bFTreePtr_;
-
- //- The bounds of all background meshes on all processors
- treeBoundBoxList allBackgroundMeshBounds_;
-
- //- The overall bounds of all of the background meshes, used to test if
- // a point that is not found on any processor is in the domain at all
- treeBoundBox globalBackgroundBounds_;
-
- //- Decomposition dictionary
- IOdictionary decomposeDict_;
-
- //- Decomposition method
- autoPtr<decompositionMethod> decomposerPtr_;
-
- //- merge distance required by fvMeshDistribute
- scalar mergeDist_;
-
- //- Scale of a cell span vs cell size used to decide to refine a cell
- scalar spanScale_;
-
- //- Smallest minimum cell size allowed, i.e. to avoid high initial
- // refinement of areas of small size
- scalar minCellSizeLimit_;
-
- //- Minimum normal level of refinement
- label minLevels_;
-
- //- How fine should the initial sample of the volume a box be to
- // investigate the local cell size
- label volRes_;
-
- //- Allowed factor above the average cell weight before a background
- // cell needs to be split
- scalar maxCellWeightCoeff_;
-
-
- // Private Member Functions
-
- void initialRefinement();
-
- //- Print details of the decomposed mesh
- void printMeshData(const polyMesh& mesh) const;
-
- //- Estimate the number of vertices that will be in this cell, returns
- // true if the cell is to be split because of the density ratio inside
- // it
- bool refineCell
- (
- label cellI,
- label volType,
- scalar& weightEstimate
- ) const;
-
- //- Select cells for refinement at the surface of the geometry to be
- // meshed
- labelList selectRefinementCells
- (
- labelList& volumeStatus,
- volScalarField& cellWeights
- ) const;
-
- //- Build the surface patch and search tree
- void buildPatchAndTree();
-
- //- Disallow default bitwise copy construct
- backgroundMeshDecomposition(const backgroundMeshDecomposition&);
-
- //- Disallow default bitwise assignment
- void operator=(const backgroundMeshDecomposition&);
-
-
-public:
-
- //- Runtime type information
- ClassName("backgroundMeshDecomposition");
-
-
- // Constructors
-
- //- Construct from components in cvMesh operation
- backgroundMeshDecomposition
- (
- const Time& runTime,
- Random& rndGen,
- const conformationSurfaces& geometryToConformTo,
- const dictionary& coeffsDict
- );
-
-
- //- Destructor
- ~backgroundMeshDecomposition();
-
-
- // Member Functions
-
- //- Build a mapDistribute for the supplied destination processor data
- static autoPtr<mapDistribute> buildMap(const List<label>& toProc);
-
- //- Redistribute the background mesh based on a supplied weight field,
- // returning a map to use to redistribute vertices.
- autoPtr<mapDistributePolyMesh> distribute
- (
- volScalarField& cellWeights
- );
-
- //- Distribute supplied the points to the appropriate processor
- autoPtr<mapDistribute> distributePoints(List<point>& points) const;
-
- //- Is the given position inside the domain of this decomposition
- bool positionOnThisProcessor(const point& pt) const;
-
- //- Are the given positions inside the domain of this decomposition
- boolList positionOnThisProcessor(const List<point>& pts) const;
-
- //- Does the given box overlap the faces of the boundary of this
- // processor
- bool overlapsThisProcessor(const treeBoundBox& box) const;
-
- //- Does the given sphere overlap the faces of the boundary of this
- // processor
- bool overlapsThisProcessor
- (
- const point& centre,
- const scalar radiusSqr
- ) const;
-
- //- Find nearest intersection of line between start and end, (exposing
- // underlying indexedOctree)
- pointIndexHit findLine
- (
- const point& start,
- const point& end
- ) const;
-
- //- Find any intersection of line between start and end, (exposing
- // underlying indexedOctree)
- pointIndexHit findLineAny
- (
- const point& start,
- const point& end
- ) const;
-
- //- What processor is the given position on?
- labelList processorPosition(const List<point>& pts) const;
-
- //- What is the nearest processor to the given position?
- labelList processorNearestPosition(const List<point>& pts) const;
-
- //- Which processors are intersected by the line segment, returns all
- // processors whose boundary patch is intersected by the sphere. By
- // default this does not return the processor that the query is
- // launched from, it is assumed that the point is on that processor.
- // The index data member of the pointIndexHit is replaced with the
- // processor index.
- List<List<pointIndexHit> > intersectsProcessors
- (
- const List<point>& starts,
- const List<point>& ends,
- bool includeOwnProcessor = false
- ) const;
-
- bool overlapsOtherProcessors
- (
- const point& centre,
- const scalar& radiusSqr
- ) const;
-
- labelList overlapProcessors
- (
- const point& centre,
- const scalar radiusSqr
- ) const;
-
-// //- Which processors overlap the given sphere, returns all processors
-// // whose boundary patch is touched by the sphere or whom the sphere
-// // is inside. By default this does not return the processor that the
-// // query is launched from, it is assumed that the point is on that
-// // processor.
-// labelListList overlapsProcessors
-// (
-// const List<point>& centres,
-// const List<scalar>& radiusSqrs,
-// const Delaunay& T,
-// bool includeOwnProcessor
-// ) const;
-
- // Access
-
- //- Return access to the underlying mesh
- inline const fvMesh& mesh() const;
-
- //- Return access to the underlying tree
- inline const indexedOctree<treeDataBPatch>& tree() const;
-
- //- Return the boundBox of this processor
- inline const treeBoundBox& procBounds() const;
-
- //- Return the cell level of the underlying mesh
- inline const labelList& cellLevel() const;
-
- //- Return the point level of the underlying mesh
- inline const labelList& pointLevel() const;
-
- //- Return the current decomposition method
- inline const decompositionMethod& decomposer() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "backgroundMeshDecompositionI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecompositionI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecompositionI.H
deleted file mode 100644
index 1f8b7b0a327a1bd7d74fbf5c1ce49719cd4e9734..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/backgroundMeshDecomposition/backgroundMeshDecompositionI.H
+++ /dev/null
@@ -1,67 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2011-2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-const Foam::fvMesh& Foam::backgroundMeshDecomposition::mesh() const
-{
- return mesh_;
-}
-
-
-const Foam::indexedOctree<Foam::treeDataBPatch>&
-Foam::backgroundMeshDecomposition::tree() const
-{
- return bFTreePtr_();
-}
-
-
-const Foam::treeBoundBox&
-Foam::backgroundMeshDecomposition::procBounds() const
-{
- return allBackgroundMeshBounds_[Pstream::myProcNo()];
-}
-
-
-const Foam::labelList& Foam::backgroundMeshDecomposition::cellLevel() const
-{
- return meshCutter_.cellLevel();
-}
-
-
-const Foam::labelList& Foam::backgroundMeshDecomposition::pointLevel() const
-{
- return meshCutter_.pointLevel();
-}
-
-
-const Foam::decompositionMethod&
-Foam::backgroundMeshDecomposition::decomposer() const
-{
- return decomposerPtr_();
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellAspectRatioControl/cellAspectRatioControl.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellAspectRatioControl/cellAspectRatioControl.C
deleted file mode 100644
index dfba259e674b5dbd6b5cca8bb4e32ab0ff59a3b7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellAspectRatioControl/cellAspectRatioControl.C
+++ /dev/null
@@ -1,110 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "cellAspectRatioControl.H"
-#include "vectorTools.H"
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::cellAspectRatioControl::cellAspectRatioControl
-(
- const dictionary& motionDict
-)
-:
- aspectRatioDict_(motionDict.subOrEmptyDict("cellAspectRatioControl")),
- aspectRatio_(aspectRatioDict_.lookupOrDefault<scalar>("aspectRatio", 1.0)),
- aspectRatioDirection_
- (
- aspectRatioDict_.lookupOrDefault<vector>
- (
- "aspectRatioDirection",
- vector(0, 0, 0)
- )
- )
-{
- Info<< nl << " Cell Aspect Ratio Control" << nl
- << " Ratio : " << aspectRatio_ << nl
- << " Direction : " << aspectRatioDirection_ << nl << endl;
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::cellAspectRatioControl::~cellAspectRatioControl()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-void Foam::cellAspectRatioControl::updateCellSizeAndFaceArea
-(
- vector& alignmentDir,
- scalar& targetFaceArea,
- scalar& targetCellSize
-) const
-{
- const scalar cosAngle = mag
- (
- vectorTools::cosPhi(alignmentDir, aspectRatioDirection_)
- );
-
- // Change target face area based on aspect ratio
- targetFaceArea
- += targetFaceArea
- *(aspectRatio_ - 1.0)
- *(1.0 - cosAngle);
-
- // Change target cell size based on aspect ratio
- targetCellSize
- += targetCellSize
- *(aspectRatio_ - 1.0)
- *cosAngle;
-
- alignmentDir *= 0.5*targetCellSize;
-}
-
-
-void Foam::cellAspectRatioControl::updateDeltaVector
-(
- const vector& alignmentDir,
- const scalar targetCellSize,
- const scalar rABMag,
- vector& delta
-) const
-{
- const scalar cosAngle = mag
- (
- vectorTools::cosPhi(alignmentDir, aspectRatioDirection_)
- );
-
- delta += 0.5
- *delta
- *cosAngle
- *(targetCellSize/rABMag)
- *(aspectRatio_ - 1.0);
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellAspectRatioControl/cellAspectRatioControl.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellAspectRatioControl/cellAspectRatioControl.H
deleted file mode 100644
index ac47311940a7c3672b9c2e378946d1c5b8b658e1..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellAspectRatioControl/cellAspectRatioControl.H
+++ /dev/null
@@ -1,115 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::cellAspectRatioControl
-
-Description
-
-SourceFiles
- cellAspectRatioControl.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef cellAspectRatioControl_H
-#define cellAspectRatioControl_H
-
-#include "dictionary.H"
-#include "vector.H"
-#include "scalar.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-
-/*---------------------------------------------------------------------------*\
- Class cellAspectRatioControl Declaration
-\*---------------------------------------------------------------------------*/
-
-class cellAspectRatioControl
-{
- // Private data
-
- const dictionary aspectRatioDict_;
-
- const scalar aspectRatio_;
-
- const vector aspectRatioDirection_;
-
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- cellAspectRatioControl(const cellAspectRatioControl&);
-
- //- Disallow default bitwise assignment
- void operator=(const cellAspectRatioControl&);
-
-
-public:
-
- // Constructors
-
- //- Construct from dictionary
- cellAspectRatioControl
- (
- const dictionary& motionDict
- );
-
-
- //- Destructor
- virtual ~cellAspectRatioControl();
-
-
- // Member Functions
-
- // Query
-
- void updateCellSizeAndFaceArea
- (
- vector& alignmentDir,
- scalar& targetFaceArea,
- scalar& targetCellSize
- ) const;
-
- void updateDeltaVector
- (
- const vector& alignmentDir,
- const scalar targetCellSize,
- const scalar rABMag,
- vector& delta
- ) const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControl/cellShapeControl.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControl/cellShapeControl.C
deleted file mode 100644
index 932b264f94345aa6aef7b9afb3f705e6060e9994..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControl/cellShapeControl.C
+++ /dev/null
@@ -1,930 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "cellShapeControl.H"
-#include "pointField.H"
-#include "scalarField.H"
-#include "triadField.H"
-#include "cellSizeAndAlignmentControl.H"
-#include "searchableSurfaceControl.H"
-#include "cellSizeFunction.H"
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-template <class Triangulation, class Type>
-Foam::tmp<Foam::Field<Type> > Foam::cellShapeControl::filterFarPoints
-(
- const Triangulation& mesh,
- const Field<Type>& field
-)
-{
- tmp<Field<Type> > tNewField(new Field<Type>(field.size()));
- Field<Type>& newField = tNewField();
-
- label added = 0;
- label count = 0;
-
- for
- (
- typename Triangulation::Finite_vertices_iterator vit =
- mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (vit->real())
- {
- newField[added++] = field[count];
- }
-
- count++;
- }
-
- newField.resize(added);
-
- return tNewField;
-}
-
-
-template <class Triangulation>
-Foam::autoPtr<Foam::mapDistribute> Foam::cellShapeControl::buildReferredMap
-(
- const Triangulation& mesh,
- labelList& indices
-)
-{
- globalIndex globalIndexing(mesh.vertexCount());
-
- DynamicList<label> dynIndices(mesh.vertexCount()/10);
-
- for
- (
- typename Triangulation::Finite_vertices_iterator vit =
- mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (vit->referred())
- {
- dynIndices.append
- (
- globalIndexing.toGlobal(vit->procIndex(), vit->index())
- );
- }
- }
-
- indices.transfer(dynIndices);
-
- List<Map<label> > compactMap;
- return autoPtr<mapDistribute>
- (
- new mapDistribute
- (
- globalIndexing,
- indices,
- compactMap
- )
- );
-}
-
-
-template <class Triangulation>
-Foam::autoPtr<Foam::mapDistribute> Foam::cellShapeControl::buildMap
-(
- const Triangulation& mesh,
- labelListList& pointPoints
-)
-{
- pointPoints.setSize(mesh.vertexCount());
-
- globalIndex globalIndexing(mesh.vertexCount());
-
- for
- (
- typename Triangulation::Finite_vertices_iterator vit =
- mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (!vit->real())
- {
- continue;
- }
-
- std::list<typename Triangulation::Vertex_handle> adjVerts;
- mesh.finite_adjacent_vertices(vit, std::back_inserter(adjVerts));
-
- DynamicList<label> indices(adjVerts.size());
-
- for
- (
- typename std::list<typename Triangulation::Vertex_handle>::
- const_iterator adjVertI = adjVerts.begin();
- adjVertI != adjVerts.end();
- ++adjVertI
- )
- {
- typename Triangulation::Vertex_handle vh = *adjVertI;
-
- if (!vh->farPoint())
- {
- indices.append
- (
- globalIndexing.toGlobal(vh->procIndex(), vh->index())
- );
- }
- }
-
- pointPoints[vit->index()].transfer(indices);
- }
-
- List<Map<label> > compactMap;
- return autoPtr<mapDistribute>
- (
- new mapDistribute
- (
- globalIndexing,
- pointPoints,
- compactMap
- )
- );
-}
-
-
-template <class Triangulation>
-Foam::tmp<Foam::triadField> Foam::cellShapeControl::buildAlignmentField
-(
- const Triangulation& mesh
-)
-{
- tmp<triadField> tAlignments
- (
- new triadField(mesh.vertexCount(), triad::unset)
- );
- triadField& alignments = tAlignments();
-
- for
- (
- typename Triangulation::Finite_vertices_iterator vit =
- mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (!vit->real())
- {
- continue;
- }
-
- alignments[vit->index()] = vit->alignment();
- }
-
- return tAlignments;
-}
-
-
-template <class Triangulation>
-Foam::tmp<Foam::pointField> Foam::cellShapeControl::buildPointField
-(
- const Triangulation& mesh
-)
-{
- tmp<pointField> tPoints
- (
- new pointField(mesh.vertexCount(), point(GREAT, GREAT, GREAT))
- );
- pointField& points = tPoints();
-
- for
- (
- typename Triangulation::Finite_vertices_iterator vit =
- mesh.finite_vertices_begin();
- vit != mesh.finite_vertices_end();
- ++vit
- )
- {
- if (!vit->real())
- {
- continue;
- }
-
- points[vit->index()] = topoint(vit->point());
- }
-
- return tPoints;
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::cellShapeControl::cellShapeControl
-(
- const Time& runTime,
- const dictionary& motionDict,
- const searchableSurfaces& allGeometry,
- const conformationSurfaces& geometryToConformTo
-)
-:
- dictionary(motionDict),
- runTime_(runTime),
- allGeometry_(allGeometry),
- geometryToConformTo_(geometryToConformTo),
- defaultCellSize_(readScalar(lookup("defaultCellSize"))),
- minimumCellSize_(readScalar(lookup("minimumCellSize"))),
- shapeControlMesh_(runTime),
- aspectRatio_(motionDict),
- sizeAndAlignment_
- (
- runTime,
- motionDict.subDict("shapeControlFunctions"),
- geometryToConformTo,
- defaultCellSize_
- )
-{}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::cellShapeControl::~cellShapeControl()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-Foam::scalarField Foam::cellShapeControl::cellSize
-(
- const pointField& pts
-) const
-{
- scalarField cellSizes(pts.size());
-
- forAll(pts, i)
- {
- cellSizes[i] = cellSize(pts[i]);
- }
-
- return cellSizes;
-}
-
-
-Foam::scalar Foam::cellShapeControl::cellSize(const point& pt) const
-{
- scalarList bary;
- cellShapeControlMesh::Cell_handle ch;
-
- shapeControlMesh_.barycentricCoords(pt, bary, ch);
-
- scalar size = 0;
-
- label nFarPoints = 0;
- for (label pI = 0; pI < 4; ++pI)
- {
- if (ch->vertex(pI)->farPoint())
- {
- nFarPoints++;
- }
- }
-
- if (shapeControlMesh_.is_infinite(ch))
- {
-// if (nFarPoints != 0)
-// {
-// for (label pI = 0; pI < 4; ++pI)
-// {
-// if (!ch->vertex(pI)->farPoint())
-// {
-// size = ch->vertex(pI)->targetCellSize();
-// return size;
-// }
-// }
-// }
-
- // Look up nearest point
- cellShapeControlMesh::Vertex_handle nearV =
- shapeControlMesh_.nearest_vertex
- (
- toPoint<cellShapeControlMesh::Point>(pt)
- );
-
- size = nearV->targetCellSize();
- }
- else
- {
- if (nFarPoints != 0)
- {
- for (label pI = 0; pI < 4; ++pI)
- {
- if (!ch->vertex(pI)->farPoint())
- {
- size = ch->vertex(pI)->targetCellSize();
- return size;
- }
- }
- }
- else
- {
- forAll(bary, pI)
- {
- size += bary[pI]*ch->vertex(pI)->targetCellSize();
- }
- }
- }
-
- return size;
-}
-
-
-//- Return the cell alignment at the given location
-Foam::tensor Foam::cellShapeControl::cellAlignment(const point& pt) const
-{
- scalarList bary;
- cellShapeControlMesh::Cell_handle ch;
-
- shapeControlMesh_.barycentricCoords(pt, bary, ch);
-
- tensor alignment = tensor::zero;
-
- label nFarPoints = 0;
- for (label pI = 0; pI < 4; ++pI)
- {
- if (ch->vertex(pI)->farPoint())
- {
- nFarPoints++;
- }
- }
-
- if (shapeControlMesh_.is_infinite(ch) || nFarPoints == 4)
- {
- Pout<< "At Infinite vertex" << endl;
-
- if (nFarPoints != 0)
- {
- for (label pI = 0; pI < 4; ++pI)
- {
- if (!ch->vertex(pI)->farPoint())
- {
- alignment = ch->vertex(pI)->alignment();
- return alignment;
- }
- }
- }
-
-// cellShapeControlMesh::Vertex_handle nearV =
-// shapeControlMesh_.nearest_vertex
-// (
-// toPoint<cellShapeControlMesh::Point>(pt)
-// );
-//
-// alignment = nearV->alignment();
- }
- else
- {
-// forAll(bary, pI)
-// {
-// alignment += bary[pI]*ch->vertex(pI)->alignment();
-// }
-
- cellShapeControlMesh::Vertex_handle nearV =
- shapeControlMesh_.nearest_vertex_in_cell
- (
- toPoint<cellShapeControlMesh::Point>(pt),
- ch
- );
-
- alignment = nearV->alignment();
- }
-
- return alignment;
-}
-
-
-void Foam::cellShapeControl::cellSizeAndAlignment
-(
- const point& pt,
- scalar& size,
- tensor& alignment
-) const
-{
- scalarList bary;
- cellShapeControlMesh::Cell_handle ch;
-
- shapeControlMesh_.barycentricCoords(pt, bary, ch);
-
- alignment = tensor::zero;
- size = 0;
-
- label nFarPoints = 0;
- for (label pI = 0; pI < 4; ++pI)
- {
- if (ch->vertex(pI)->farPoint())
- {
- nFarPoints++;
- }
- }
-
- if (shapeControlMesh_.is_infinite(ch))
- {
- if (nFarPoints != 0)
- {
- for (label pI = 0; pI < 4; ++pI)
- {
- if (!ch->vertex(pI)->farPoint())
- {
- size = ch->vertex(pI)->targetCellSize();
- alignment = ch->vertex(pI)->alignment();
- return;
- }
- }
- }
-
-// cellShapeControlMesh::Vertex_handle nearV =
-// shapeControlMesh_.nearest_vertex
-// (
-// toPoint<cellShapeControlMesh::Point>(pt)
-// );
-//
-// size = nearV->targetCellSize();
-// alignment = nearV->alignment();
- }
- else
- {
- if (nFarPoints != 0)
- {
- for (label pI = 0; pI < 4; ++pI)
- {
- if (!ch->vertex(pI)->farPoint())
- {
- size = ch->vertex(pI)->targetCellSize();
- alignment = ch->vertex(pI)->alignment();
- return;
- }
- }
- }
- else
- {
-// triad tri;
-
- forAll(bary, pI)
- {
- size += bary[pI]*ch->vertex(pI)->targetCellSize();
-
-// triad triTmp2 = ch->vertex(pI)->alignment();
-// tri += triTmp2*bary[pI];
- }
-
-// tri.normalize();
-// tri.orthogonalize();
-// tri = tri.sortxyz();
-//
-// alignment = tri;
-
- cellShapeControlMesh::Vertex_handle nearV =
- shapeControlMesh_.nearest_vertex
- (
- toPoint<cellShapeControlMesh::Point>(pt)
- );
-
- alignment = nearV->alignment();
- }
- }
-}
-
-
-void Foam::cellShapeControl::initialMeshPopulation
-(
- const autoPtr<backgroundMeshDecomposition>& decomposition
-)
-{
- // Need to pass in the background mesh decomposition so that can test if
- // a point to insert is on the processor.
- if (Pstream::parRun())
- {
- shapeControlMesh_.insertBoundingPoints(decomposition().procBounds());
- }
- else
- {
- shapeControlMesh_.insertBoundingPoints(allGeometry_.bounds());
- }
-
- const PtrList<cellSizeAndAlignmentControl>& controlFunctions =
- sizeAndAlignment_.controlFunctions();
-
- forAll(controlFunctions, fI)
- {
- const cellSizeAndAlignmentControl& controlFunction =
- controlFunctions[fI];
-
- Info<< "Inserting points from " << controlFunction.name()
- << " (" << controlFunction.type() << ")" << endl;
-
- pointField pts;
- scalarField sizes;
- triadField alignments;
-
- controlFunction.initialVertices(pts, sizes, alignments);
-
- List<Vb> vertices(pts.size());
-
- // Clip the minimum size
- forAll(vertices, vI)
- {
- vertices[vI] = Vb(pts[vI], Vb::vtInternal);
- vertices[vI].targetCellSize() = max(sizes[vI], minimumCellSize_);
- vertices[vI].alignment() = alignments[vI];
- }
-
- pts.clear();
- sizes.clear();
- alignments.clear();
-
- label nRejected = 0;
-
- PackedBoolList keepVertex(vertices.size(), true);
-
- if (Pstream::parRun())
- {
- forAll(vertices, vI)
- {
- const bool onProc = decomposition().positionOnThisProcessor
- (
- topoint(vertices[vI].point())
- );
-
- if (!onProc)
- {
- keepVertex[vI] = false;
- }
- }
- }
-
- inplaceSubset(keepVertex, vertices);
-
- const label preInsertedSize = shapeControlMesh_.number_of_vertices();
-
- shapeControlMesh_.rangeInsertWithInfo(vertices.begin(), vertices.end());
-
- Info<< " Inserted "
- << returnReduce
- (
- shapeControlMesh_.number_of_vertices()
- - preInsertedSize, sumOp<label>()
- )
- << "/" << vertices.size()
- << endl;
- }
-}
-
-
-Foam::label Foam::cellShapeControl::refineMesh
-(
- const autoPtr<backgroundMeshDecomposition>& decomposition
-)
-{
- const pointField cellCentres(shapeControlMesh_.cellCentres());
-
- Info<< " Created cell centres" << endl;
-
- const PtrList<cellSizeAndAlignmentControl>& controlFunctions =
- sizeAndAlignment_.controlFunctions();
-
- DynamicList<Vb> verts(shapeControlMesh_.number_of_vertices());
-
- forAll(cellCentres, cellI)
- {
- const Foam::point& pt = cellCentres[cellI];
-
- if (!geometryToConformTo_.inside(pt))
- {
- continue;
- }
-
- scalarList bary;
- cellShapeControlMesh::Cell_handle ch;
-
- shapeControlMesh_.barycentricCoords(pt, bary, ch);
-
- if (shapeControlMesh_.is_infinite(ch))
- {
- continue;
- }
-
- scalar interpolatedSize = 0;
- forAll(bary, pI)
- {
- interpolatedSize += bary[pI]*ch->vertex(pI)->targetCellSize();
- }
-
- label lastPriority = labelMax;
- scalar lastCellSize = GREAT;
- forAll(controlFunctions, fI)
- {
- const cellSizeAndAlignmentControl& controlFunction =
- controlFunctions[fI];
-
- if (controlFunction.priority() > lastPriority)
- {
- continue;
- }
-
- if (isA<searchableSurfaceControl>(controlFunction))
- {
- const cellSizeFunction& sizeFunction =
- dynamicCast<const searchableSurfaceControl>
- (
- controlFunction
- ).sizeFunction();
-
- scalar cellSize = 0;
- if (sizeFunction.cellSize(pt, cellSize))
- {
- if (controlFunction.priority() == lastPriority)
- {
- if (cellSize < lastCellSize)
- {
- lastCellSize = cellSize;
- }
- }
- else
- {
- lastCellSize = cellSize;
- }
-
- lastPriority = controlFunction.priority();
- }
- }
- }
-
- if
- (
- lastCellSize < GREAT
- //&& mag(interpolatedSize - lastCellSize)/lastCellSize > 0.2
- )
- {
- if (Pstream::parRun())
- {
- if (!decomposition().positionOnThisProcessor(pt))
- {
- continue;
- }
- }
-
- verts.append
- (
- Vb
- (
- toPoint<cellShapeControlMesh::Point>(pt),
- Vb::vtInternal
- )
- );
- verts.last().targetCellSize() = lastCellSize;
- verts.last().alignment() = triad::unset;
- }
- }
-
- shapeControlMesh_.insertPoints(verts);
-
- return verts.size();
-}
-
-
-void Foam::cellShapeControl::smoothMesh()
-{
- label maxSmoothingIterations = readLabel(lookup("maxSmoothingIterations"));
- scalar minResidual = 0;
-
- labelListList pointPoints;
- autoPtr<mapDistribute> meshDistributor = buildMap
- (
- shapeControlMesh_,
- pointPoints
- );
-
- triadField alignments(buildAlignmentField(shapeControlMesh_));
- pointField points(buildPointField(shapeControlMesh_));
- // Setup the sizes and alignments on each point
- triadField fixedAlignments(shapeControlMesh_.vertexCount(), triad::unset);
-
- for
- (
- CellSizeDelaunay::Finite_vertices_iterator vit =
- shapeControlMesh_.finite_vertices_begin();
- vit != shapeControlMesh_.finite_vertices_end();
- ++vit
- )
- {
- if (vit->real())
- {
- fixedAlignments[vit->index()] = vit->alignment();
- }
- }
-
- Info<< nl << "Smoothing alignments" << endl;
-
- for (label iter = 0; iter < maxSmoothingIterations; iter++)
- {
- Info<< "Iteration " << iter;
-
- meshDistributor().distribute(points);
- meshDistributor().distribute(alignments);
-
- scalar residual = 0;
-
- triadField triadAv(alignments.size(), triad::unset);
-
- forAll(pointPoints, pI)
- {
- const labelList& pPoints = pointPoints[pI];
-
- if (pPoints.empty())
- {
- continue;
- }
-
- triad& newTriad = triadAv[pI];
-
- forAll(pPoints, adjPointI)
- {
- const label adjPointIndex = pPoints[adjPointI];
-
- scalar dist = mag(points[pI] - points[adjPointIndex]);
-
- triad tmpTriad = alignments[adjPointIndex];
-
- for (direction dir = 0; dir < 3; dir++)
- {
- if (tmpTriad.set(dir))
- {
- tmpTriad[dir] *= (1.0/dist);
- }
- }
-
- newTriad += tmpTriad;
- }
-
- newTriad.normalize();
- newTriad.orthogonalize();
- newTriad = newTriad.sortxyz();
-
- // Enforce the boundary conditions
- const triad& fixedAlignment = fixedAlignments[pI];
-
- label nFixed = 0;
-
- forAll(fixedAlignment, dirI)
- {
- if (fixedAlignment.set(dirI))
- {
- nFixed++;
- }
- }
-
- if (nFixed == 1)
- {
- forAll(fixedAlignment, dirI)
- {
- if (fixedAlignment.set(dirI))
- {
- newTriad.align(fixedAlignment[dirI]);
- }
- }
- }
- else if (nFixed == 2)
- {
- forAll(fixedAlignment, dirI)
- {
- if (fixedAlignment.set(dirI))
- {
- newTriad[dirI] = fixedAlignment[dirI];
- }
- else
- {
- newTriad[dirI] = triad::unset[dirI];
- }
- }
-
- newTriad.orthogonalize();
- }
- else if (nFixed == 3)
- {
- forAll(fixedAlignment, dirI)
- {
- if (fixedAlignment.set(dirI))
- {
- newTriad[dirI] = fixedAlignment[dirI];
- }
- }
- }
-
- const triad& oldTriad = alignments[pI];
-
- for (direction dir = 0; dir < 3; ++dir)
- {
- if
- (
- newTriad.set(dir)
- && oldTriad.set(dir)
- //&& !fixedAlignment.set(dir)
- )
- {
- scalar dotProd = (oldTriad[dir] & newTriad[dir]);
- scalar diff = mag(dotProd) - 1.0;
-
- residual += mag(diff);
- }
- }
-
-// if (iter == 198 || iter == 199)
-// {
-// Info<< "Triad" << nl
-// << " Fixed (" << nFixed << ") = " << fixedAlignment
-// << nl
-// << " Old = " << oldTriad << nl
-// << " Pre-Align= " << triadAv[pI] << nl
-// << " New = " << newTriad << nl
-// << " Residual = " << residual << endl;
-// }
- }
-
- forAll(alignments, pI)
- {
- alignments[pI] = triadAv[pI].sortxyz();
- }
-
- reduce(residual, sumOp<scalar>());
-
- Info<< ", Residual = " << residual << endl;
-
- if (iter > 0 && residual <= minResidual)
- {
- break;
- }
- }
-
- meshDistributor().distribute(alignments);
-
- for
- (
- CellSizeDelaunay::Finite_vertices_iterator vit =
- shapeControlMesh_.finite_vertices_begin();
- vit != shapeControlMesh_.finite_vertices_end();
- ++vit
- )
- {
- if (vit->real())
- {
- vit->alignment() = alignments[vit->index()];
- }
- }
-
- labelList referredPoints;
- autoPtr<mapDistribute> referredDistributor = buildReferredMap
- (
- shapeControlMesh_,
- referredPoints
- );
-
- alignments.setSize(shapeControlMesh_.vertexCount());
- referredDistributor().distribute(alignments);
-
- label referredI = 0;
- for
- (
- CellSizeDelaunay::Finite_vertices_iterator vit =
- shapeControlMesh_.finite_vertices_begin();
- vit != shapeControlMesh_.finite_vertices_end();
- ++vit
- )
- {
- if (vit->referred())
- {
- vit->alignment() = alignments[referredPoints[referredI++]];
- }
- }
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControl/cellShapeControl.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControl/cellShapeControl.H
deleted file mode 100644
index 040ff6f2e09ee51571a0f525ec6507816a9bf1d7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControl/cellShapeControl.H
+++ /dev/null
@@ -1,213 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::cellShapeControl
-
-Description
-
-SourceFiles
- cellShapeControlI.H
- cellShapeControl.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef cellShapeControl_H
-#define cellShapeControl_H
-
-#include "dictionary.H"
-#include "autoPtr.H"
-#include "tensor.H"
-#include "point.H"
-#include "primitiveFieldsFwd.H"
-#include "pointFieldFwd.H"
-#include "Time.H"
-#include "searchableSurfaces.H"
-#include "conformationSurfaces.H"
-#include "cellAspectRatioControl.H"
-#include "cellSizeAndAlignmentControls.H"
-#include "cellShapeControlMesh.H"
-#include "backgroundMeshDecomposition.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-
-/*---------------------------------------------------------------------------*\
- Class cellShapeControl Declaration
-\*---------------------------------------------------------------------------*/
-
-class cellShapeControl
-:
- public dictionary
-{
- // Private data
-
- const Time& runTime_;
-
- const searchableSurfaces& allGeometry_;
-
- const conformationSurfaces& geometryToConformTo_;
-
- const scalar defaultCellSize_;
-
- const scalar minimumCellSize_;
-
- cellShapeControlMesh shapeControlMesh_;
-
- cellAspectRatioControl aspectRatio_;
-
- cellSizeAndAlignmentControls sizeAndAlignment_;
-
-
- // Private Member Functions
-
- template <class Triangulation, class Type>
- tmp<Field<Type> > filterFarPoints
- (
- const Triangulation& mesh,
- const Field<Type>& field
- );
-
- template <class Triangulation>
- autoPtr<mapDistribute> buildMap
- (
- const Triangulation& mesh,
- labelListList& pointPoints
- );
-
- template <class Triangulation>
- autoPtr<mapDistribute> buildReferredMap
- (
- const Triangulation& mesh,
- labelList& indices
- );
-
- template <class Triangulation>
- tmp<triadField> buildAlignmentField(const Triangulation& mesh);
-
- template <class Triangulation>
- tmp<pointField> buildPointField(const Triangulation& mesh);
-
- //- Disallow default bitwise copy construct
- cellShapeControl(const cellShapeControl&);
-
- //- Disallow default bitwise assignment
- void operator=(const cellShapeControl&);
-
-
-public:
-
- //- Runtime type information
- ClassName("cellShapeControl");
-
-
- // Constructors
-
- //- Construct from dictionary and references to conformalVoronoiMesh and
- // searchableSurfaces
- cellShapeControl
- (
- const Time& runTime,
- const dictionary& cellShapeControlDict,
- const searchableSurfaces& allGeometry,
- const conformationSurfaces& geometryToConformTo
- );
-
-
- //- Destructor
- ~cellShapeControl();
-
-
- // Member Functions
-
- // Access
-
- inline const scalar& defaultCellSize() const;
-
- inline cellShapeControlMesh& shapeControlMesh();
-
- inline const cellShapeControlMesh& shapeControlMesh() const;
-
- inline const cellAspectRatioControl& aspectRatio() const;
-
- inline const cellSizeAndAlignmentControls& sizeAndAlignment() const;
-
-
- // Query
-
- //- Return the cell size at the given location
- scalar cellSize(const point& pt) const;
-
- scalarField cellSize(const pointField& pts) const;
-
- //- Return the cell alignment at the given location
- tensor cellAlignment(const point& pt) const;
-
- void cellSizeAndAlignment
- (
- const point& pt,
- scalar& size,
- tensor& alignment
- ) const;
-
-
- // Edit
-
- void initialMeshPopulation
- (
- const autoPtr<backgroundMeshDecomposition>& decomposition
- );
-
- label refineMesh
- (
- const autoPtr<backgroundMeshDecomposition>& decomposition
- );
-
- void smoothMesh();
-
- //- Add a control point with a specified size and alignment
-// virtual void addControlPoint
-// (
-// const point& pt,
-// const scalar& size,
-// const tensor& alignment
-// );
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "cellShapeControlI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControl/cellShapeControlI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControl/cellShapeControlI.H
deleted file mode 100644
index f7fdebc93192998027adbdfc2ba6527221a0b248..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControl/cellShapeControlI.H
+++ /dev/null
@@ -1,55 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-inline Foam::cellShapeControlMesh&
-Foam::cellShapeControl::shapeControlMesh()
-{
- return shapeControlMesh_;
-}
-
-
-inline const Foam::cellShapeControlMesh&
-Foam::cellShapeControl::shapeControlMesh() const
-{
- return shapeControlMesh_;
-}
-
-
-inline const Foam::scalar& Foam::cellShapeControl::defaultCellSize() const
-{
- return defaultCellSize_;
-}
-
-
-inline const Foam::cellAspectRatioControl&
-Foam::cellShapeControl::aspectRatio() const
-{
- return aspectRatio_;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMesh.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMesh.C
deleted file mode 100644
index ae57bbb087bb74a2f37f0efb6a4d52b6f4daaeec..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMesh.C
+++ /dev/null
@@ -1,760 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "cellShapeControlMesh.H"
-#include "pointIOField.H"
-#include "scalarIOField.H"
-#include "tensorIOField.H"
-#include "tetrahedron.H"
-#include "plane.H"
-#include "transform.H"
-#include "meshTools.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-defineTypeNameAndDebug(cellShapeControlMesh, 0);
-
-}
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-//Foam::tensor Foam::cellShapeControlMesh::requiredAlignment
-//(
-// const Foam::point& pt,
-// const searchableSurfaces& allGeometry,
-// const conformationSurfaces& geometryToConformTo
-//) const
-//{
-// pointIndexHit surfHit;
-// label hitSurface;
-//
-// geometryToConformTo.findSurfaceNearest
-// (
-// pt,
-// sqr(GREAT),
-// surfHit,
-// hitSurface
-// );
-//
-// if (!surfHit.hit())
-// {
-// FatalErrorIn
-// (
-// "Foam::tensor Foam::conformalVoronoiMesh::requiredAlignment"
-// ) << "findSurfaceNearest did not find a hit across the surfaces."
-// << exit(FatalError) << endl;
-// }
-//
-// // Primary alignment
-//
-// vectorField norm(1);
-//
-// allGeometry[hitSurface].getNormal
-// (
-// List<pointIndexHit>(1, surfHit),
-// norm
-// );
-//
-// const vector np = norm[0];
-//
-// // Generate equally spaced 'spokes' in a circle normal to the
-// // direction from the vertex to the closest point on the surface
-// // and look for a secondary intersection.
-//
-// const vector d = surfHit.hitPoint() - pt;
-//
-// const tensor Rp = rotationTensor(vector(0,0,1), np);
-//
-// const label s = 36;//cvMeshControls().alignmentSearchSpokes();
-//
-// scalar closestSpokeHitDistance = GREAT;
-//
-// pointIndexHit closestSpokeHit;
-//
-// label closestSpokeSurface = -1;
-//
-// const scalar spanMag = geometryToConformTo.globalBounds().mag();
-//
-// for (label i = 0; i < s; i++)
-// {
-// vector spoke
-// (
-// Foam::cos(i*constant::mathematical::twoPi/s),
-// Foam::sin(i*constant::mathematical::twoPi/s),
-// 0
-// );
-//
-// spoke *= spanMag;
-//
-// spoke = Rp & spoke;
-//
-// pointIndexHit spokeHit;
-//
-// label spokeSurface = -1;
-//
-// // internal spoke
-//
-// geometryToConformTo.findSurfaceNearestIntersection
-// (
-// pt,
-// pt + spoke,
-// spokeHit,
-// spokeSurface
-// );
-//
-// if (spokeHit.hit())
-// {
-// scalar spokeHitDistance = mag
-// (
-// spokeHit.hitPoint() - pt
-// );
-//
-// if (spokeHitDistance < closestSpokeHitDistance)
-// {
-// closestSpokeHit = spokeHit;
-// closestSpokeSurface = spokeSurface;
-// closestSpokeHitDistance = spokeHitDistance;
-// }
-// }
-//
-// //external spoke
-//
-// Foam::point mirrorPt = pt + 2*d;
-//
-// geometryToConformTo.findSurfaceNearestIntersection
-// (
-// mirrorPt,
-// mirrorPt + spoke,
-// spokeHit,
-// spokeSurface
-// );
-//
-// if (spokeHit.hit())
-// {
-// scalar spokeHitDistance = mag
-// (
-// spokeHit.hitPoint() - mirrorPt
-// );
-//
-// if (spokeHitDistance < closestSpokeHitDistance)
-// {
-// closestSpokeHit = spokeHit;
-// closestSpokeSurface = spokeSurface;
-// closestSpokeHitDistance = spokeHitDistance;
-// }
-// }
-// }
-//
-// if (closestSpokeSurface == -1)
-// {
-//// WarningIn
-//// (
-//// "conformalVoronoiMesh::requiredAlignment"
-//// "("
-//// "const Foam::point& pt"
-//// ") const"
-//// ) << "No secondary surface hit found in spoke search "
-//// << "using " << s
-//// << " spokes, try increasing alignmentSearchSpokes."
-//// << endl;
-//
-// return I;
-// }
-//
-// // Auxiliary alignment generated by spoke intersection normal.
-//
-// allGeometry[closestSpokeSurface].getNormal
-// (
-// List<pointIndexHit>(1, closestSpokeHit),
-// norm
-// );
-//
-// const vector& na = norm[0];
-//
-// // Secondary alignment
-// vector ns = np ^ na;
-//
-// if (mag(ns) < SMALL)
-// {
-// FatalErrorIn("conformalVoronoiMesh::requiredAlignment")
-// << "Parallel normals detected in spoke search." << nl
-// << "point: " << pt << nl
-// << "closest surface point: " << surfHit.hitPoint() << nl
-// << "closest spoke hit: " << closestSpokeHit.hitPoint() << nl
-// << "np: " << surfHit.hitPoint() + np << nl
-// << "ns: " << closestSpokeHit.hitPoint() + na << nl
-// << exit(FatalError);
-// }
-//
-// ns /= mag(ns);
-//
-// tensor Rs = rotationTensor((Rp & vector(0,1,0)), ns);
-//
-// return (Rs & Rp);
-//}
-
-
-Foam::label Foam::cellShapeControlMesh::removePoints()
-{
- label nRemoved = 0;
- for
- (
- CellSizeDelaunay::Finite_vertices_iterator vit =
- finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- std::list<Vertex_handle> verts;
- adjacent_vertices(vit, std::back_inserter(verts));
-
- bool removePt = true;
- for
- (
- std::list<Vertex_handle>::iterator aVit = verts.begin();
- aVit != verts.end();
- ++aVit
- )
- {
- Vertex_handle avh = *aVit;
-
- scalar diff =
- mag(avh->targetCellSize() - vit->targetCellSize())
- /max(vit->targetCellSize(), 1e-6);
-
- if (diff > 0.05)
- {
- removePt = false;
- }
- }
-
- if (removePt)
- {
- remove(vit);
- nRemoved++;
- }
- }
-
- return nRemoved;
-}
-
-
-Foam::tmp<Foam::pointField> Foam::cellShapeControlMesh::cellCentres() const
-{
- tmp<pointField> tcellCentres(new pointField(number_of_finite_cells()));
- pointField& cellCentres = tcellCentres();
-
- label count = 0;
- for
- (
- CellSizeDelaunay::Finite_cells_iterator c = finite_cells_begin();
- c != finite_cells_end();
- ++c
- )
- {
- if (c->hasFarPoint())
- {
- continue;
- }
-
- scalarList bary;
- cellShapeControlMesh::Cell_handle ch;
-
- const Foam::point centre = topoint
- (
- CGAL::centroid<baseK>
- (
- c->vertex(0)->point(),
- c->vertex(1)->point(),
- c->vertex(2)->point(),
- c->vertex(3)->point()
- )
- );
-
- cellCentres[count++] = centre;
- }
-
- cellCentres.resize(count);
-
- return tcellCentres;
-}
-
-
-void Foam::cellShapeControlMesh::writeTriangulation()
-{
- OFstream str
- (
- "refinementTriangulation_"
- + name(Pstream::myProcNo())
- + ".obj"
- );
-
- label count = 0;
-
- Info<< "Write refinementTriangulation" << endl;
-
- for
- (
- CellSizeDelaunay::Finite_edges_iterator e = finite_edges_begin();
- e != finite_edges_end();
- ++e
- )
- {
- Cell_handle c = e->first;
- Vertex_handle vA = c->vertex(e->second);
- Vertex_handle vB = c->vertex(e->third);
-
- // Don't write far edges
- if (vA->farPoint() || vB->farPoint())
- {
- continue;
- }
-
- // Don't write unowned edges
- if (vA->referred() && vB->referred())
- {
- continue;
- }
-
- pointFromPoint p1 = topoint(vA->point());
- pointFromPoint p2 = topoint(vB->point());
-
- meshTools::writeOBJ(str, p1, p2, count);
- }
-
- if (is_valid())
- {
- Info<< " Triangulation is valid" << endl;
- }
- else
- {
- FatalErrorIn
- (
- "Foam::triangulatedMesh::writeRefinementTriangulation()"
- ) << "Triangulation is not valid"
- << abort(FatalError);
- }
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::cellShapeControlMesh::cellShapeControlMesh(const Time& runTime)
-:
- runTime_(runTime),
- defaultCellSize_(0.0)
-{}
-
-
-//Foam::triangulatedMesh::triangulatedMesh
-//(
-// const Time& runTime,
-// const fileName& pointsFile,
-// const fileName& sizesFile,
-// const fileName& alignmentsFile,
-// const scalar& defaultCellSize
-//)
-//:
-// defaultCellSize_(defaultCellSize)
-//{
-// Info<< " Reading points from file : " << pointsFile << endl;
-//
-// pointIOField points
-// (
-// IOobject
-// (
-// pointsFile,
-// runTime.constant(),
-// runTime,
-// IOobject::MUST_READ,
-// IOobject::NO_WRITE
-// )
-// );
-//
-// Info<< " Reading sizes from file : " << sizesFile << endl;
-//
-// scalarIOField sizes
-// (
-// IOobject
-// (
-// sizesFile,
-// runTime.constant(),
-// runTime,
-// IOobject::MUST_READ,
-// IOobject::NO_WRITE
-// )
-// );
-//
-// Info<< " Reading alignments from file : " << alignmentsFile << endl;
-//
-// tensorIOField alignments
-// (
-// IOobject
-// (
-// alignmentsFile,
-// runTime.constant(),
-// runTime,
-// IOobject::MUST_READ,
-// IOobject::NO_WRITE
-// )
-// );
-//
-// Info<< " Number of points : " << points.size() << endl;
-// Info<< " Minimum size : " << min(sizes) << endl;
-// Info<< " Average size : " << average(sizes) << endl;
-// Info<< " Maximum size : " << max(sizes) << endl;
-//
-// forAll(points, pI)
-// {
-// size_t nVert = number_of_vertices();
-//
-// Vertex_handle v = insert
-// (
-// Point(points[pI].x(), points[pI].y(), points[pI].z())
-// );
-//
-// if (number_of_vertices() == nVert)
-// {
-// Info<< " Failed to insert point : " << points[pI] << endl;
-// }
-//
-// v->targetCellSize() = sizes[pI];
-//
-// const tensor& alignment = alignments[pI];
-//
-//
-//
-// v->alignment() = alignment;
-// }
-//
-//// scalar factor = 1.0;
-//// label maxIteration = 1;
-////
-//// for (label iteration = 0; iteration < maxIteration; ++iteration)
-//// {
-//// Info<< "Iteration : " << iteration << endl;
-////
-//// label nRefined = refineTriangulation(factor);
-////
-//// Info<< " Number of cells refined in refinement iteration : "
-//// << nRefined << nl << endl;
-////
-//// if (nRefined <= 0 && iteration != 0)
-//// {
-//// break;
-//// }
-////
-//// factor *= 1.5;
-//// }
-//
-// //writeRefinementTriangulation();
-//}
-
-
-//Foam::triangulatedMesh::triangulatedMesh
-//(
-// const Time& runTime,
-// const DynamicList<Foam::point>& points,
-// const DynamicList<scalar>& sizes,
-// const DynamicList<tensor>& alignments,
-// const scalar& defaultCellSize
-//)
-//:
-// defaultCellSize_(defaultCellSize)
-//{
-// forAll(points, pI)
-// {
-// size_t nVert = number_of_vertices();
-//
-// Vertex_handle v = insert
-// (
-// Point(points[pI].x(), points[pI].y(), points[pI].z())
-// );
-//
-// if (number_of_vertices() == nVert)
-// {
-// Info<< "Failed to insert point : " << points[pI] << endl;
-// }
-//
-// v->targetCellSize() = sizes[pI];
-//
-// v->alignment() = alignments[pI];
-// }
-//
-// //writeRefinementTriangulation();
-//
-// Info<< nl << "Refinement triangulation information: " << endl;
-// Info<< " Number of vertices: " << label(number_of_vertices()) << endl;
-// Info<< " Number of cells : "
-// << label(number_of_finite_cells()) << endl;
-// Info<< " Number of faces : "
-// << label(number_of_finite_facets()) << endl;
-// Info<< " Number of edges : "
-// << label(number_of_finite_edges()) << endl;
-// Info<< " Dimensionality : " << label(dimension()) << nl << endl;
-//}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::cellShapeControlMesh::~cellShapeControlMesh()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-void Foam::cellShapeControlMesh::barycentricCoords
-(
- const Foam::point& pt,
- scalarList& bary,
- Cell_handle& ch
-) const
-{
- // Use the previous cell handle as a hint on where to start searching
- ch = locate
- (
- Point(pt.x(), pt.y(), pt.z())
- );
-
- if (!is_infinite(ch))
- {
- oldCellHandle_ = ch;
-
- tetPointRef tet
- (
- topoint(ch->vertex(0)->point()),
- topoint(ch->vertex(1)->point()),
- topoint(ch->vertex(2)->point()),
- topoint(ch->vertex(3)->point())
- );
-
- tet.barycentric(pt, bary);
- }
-}
-
-
-Foam::boundBox Foam::cellShapeControlMesh::bounds() const
-{
- DynamicList<Foam::point> pts(number_of_vertices());
-
- for
- (
- Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->real())
- {
- pts.append(topoint(vit->point()));
- }
- }
-
- boundBox bb(pts);
-
- return bb;
-}
-
-
-void Foam::cellShapeControlMesh::distribute
-(
- const backgroundMeshDecomposition& decomposition
-)
-{
- if (!Pstream::parRun())
- {
- return;
- }
-
- autoPtr<mapDistribute> mapDist =
- DistributedDelaunayMesh<CellSizeDelaunay>::distribute(decomposition);
-
- DynamicList<Foam::point> points(number_of_vertices());
- DynamicList<scalar> sizes(number_of_vertices());
- DynamicList<tensor> alignments(number_of_vertices());
-
- for
- (
- Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->real())
- {
- points.append(topoint(vit->point()));
- sizes.append(vit->targetCellSize());
- alignments.append(vit->alignment());
- }
- }
-
- mapDist().distribute(points);
- mapDist().distribute(sizes);
- mapDist().distribute(alignments);
-
- // Reset the entire tessellation
- DelaunayMesh<CellSizeDelaunay>::reset();
-
- Info<< nl << " Inserting distributed tessellation" << endl;
-
- insertBoundingPoints(decomposition.procBounds());
-
- // Internal points have to be inserted first
-
- DynamicList<Vb> verticesToInsert(points.size());
-
- forAll(points, pI)
- {
- verticesToInsert.append
- (
- Vb
- (
- toPoint<Point>(points[pI]),
- -1,
- Vb::vtInternal,
- Pstream::myProcNo()
- )
- );
-
- verticesToInsert.last().targetCellSize() = sizes[pI];
- verticesToInsert.last().alignment() = alignments[pI];
- }
-
- this->rangeInsertWithInfo
- (
- verticesToInsert.begin(),
- verticesToInsert.end(),
- true
- );
-
- sync(decomposition.procBounds());
-
- Info<< " Total number of vertices after redistribution "
- << returnReduce(label(number_of_vertices()), sumOp<label>()) << endl;
-}
-
-
-Foam::tensorField Foam::cellShapeControlMesh::dumpAlignments() const
-{
- tensorField alignmentsTmp(number_of_vertices(), tensor::zero);
-
- label count = 0;
- for
- (
- Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- alignmentsTmp[count++] = vit->alignment();
- }
-
- return alignmentsTmp;
-}
-
-
-void Foam::cellShapeControlMesh::insertBoundingPoints(const boundBox& bb)
-{
- boundBox bbInflate = bb;
- bbInflate.inflate(10);
-
- pointField pts(bbInflate.points());
-
- forAll(pts, pI)
- {
- insertFar(pts[pI]);
- }
-}
-
-
-void Foam::cellShapeControlMesh::write() const
-{
- Info<< "Writing cell size and alignment mesh" << endl;
-
- const fileName name("cellSizeAndAlignmentMesh");
-
- // Reindex the cells
- label cellCount = 0;
- for
- (
- Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- if (!cit->hasFarPoint() && !is_infinite(cit))
- {
- cit->cellIndex() = cellCount++;
- }
- }
-
- labelList vertexMap;
- labelList cellMap;
-
- autoPtr<fvMesh> meshPtr = DelaunayMesh<CellSizeDelaunay>::createMesh
- (
- name,
- runTime_,
- vertexMap,
- cellMap
- );
- const fvMesh& mesh = meshPtr();
-
- pointScalarField sizes
- (
- IOobject
- (
- "sizes",
- mesh.time().timeName(),
- mesh,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- pointMesh::New(mesh),
- scalar(0)
- );
-
- for
- (
- Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (!vit->farPoint())
- {
- sizes[vertexMap[vit->index()]] = vit->targetCellSize();
- }
- }
-
- mesh.write();
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMesh.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMesh.H
deleted file mode 100644
index e6cb37a2c3b097b82af919982f1a512331a6bf03..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMesh.H
+++ /dev/null
@@ -1,168 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::cellShapeControlMesh
-
-Description
-
-SourceFiles
- cellShapeControlMeshI.H
- cellShapeControlMesh.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef cellShapeControlMesh_H
-#define cellShapeControlMesh_H
-
-#include "Time.H"
-#include "scalar.H"
-#include "point.H"
-#include "tensor.H"
-#include "triad.H"
-#include "fileName.H"
-#include "searchableSurfaces.H"
-#include "conformationSurfaces.H"
-#include "DistributedDelaunayMesh.H"
-#include "CGALTriangulation3Ddefs.H"
-#include "backgroundMeshDecomposition.H"
-#include "boundBox.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class cellShapeControlMesh Declaration
-\*---------------------------------------------------------------------------*/
-
-class cellShapeControlMesh
-:
- public DistributedDelaunayMesh<CellSizeDelaunay>
-{
-public:
-
- typedef CellSizeDelaunay::Cell_handle Cell_handle;
- typedef CellSizeDelaunay::Vertex_handle Vertex_handle;
- typedef CellSizeDelaunay::Point Point;
-
-
-private:
-
- // Private data
-
- const Time& runTime_;
-
- mutable Cell_handle oldCellHandle_;
-
- const scalar defaultCellSize_;
-
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- cellShapeControlMesh(const cellShapeControlMesh&);
-
- //- Disallow default bitwise assignment
- void operator=(const cellShapeControlMesh&);
-
-
-public:
-
- //- Runtime type information
- ClassName("cellShapeControlMesh");
-
-
- // Constructors
-
- explicit cellShapeControlMesh(const Time& runTime);
-
-
- //- Destructor
- ~cellShapeControlMesh();
-
-
- // Member Functions
-
- // Query
-
- //- Calculate and return the barycentric coordinates for
- // interpolating quantities on the background mesh
- void barycentricCoords
- (
- const Foam::point& pt,
- scalarList& bary,
- Cell_handle& ch
- ) const;
-
- boundBox bounds() const;
-
-
- // Edit
-
- label removePoints();
-
- //- Get the centres of all the tets
- tmp<pointField> cellCentres() const;
-
- inline Vertex_handle insert
- (
- const Foam::point& pt,
- const scalar& size,
- const triad& alignment,
- const Foam::indexedVertexEnum::vertexType type = Vb::vtInternal
- );
-
- inline Vertex_handle insertFar
- (
- const Foam::point& pt
- );
-
- void distribute
- (
- const backgroundMeshDecomposition& decomposition
- );
-
- tensorField dumpAlignments() const;
-
- void insertBoundingPoints(const boundBox& bb);
-
- void writeTriangulation();
-
- void write() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "cellShapeControlMeshI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMeshI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMeshI.H
deleted file mode 100644
index 305256d4ccaf924d7c5dc19c867b6812ffa724f0..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellShapeControlMesh/cellShapeControlMeshI.H
+++ /dev/null
@@ -1,68 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-Foam::cellShapeControlMesh::Vertex_handle Foam::cellShapeControlMesh::insert
-(
- const Foam::point& pt,
- const scalar& size,
- const triad& alignment,
- const Foam::indexedVertexEnum::vertexType type
-)
-{
- Vertex_handle v = CellSizeDelaunay::insert
- (
- Point(pt.x(), pt.y(), pt.z())
- );
- v->type() = type;
- v->index() = getNewVertexIndex();
- v->procIndex() = Pstream::myProcNo();
- v->targetCellSize() = size;
- v->alignment() = tensor(alignment.x(), alignment.y(), alignment.z());
-
- return v;
-}
-
-
-Foam::cellShapeControlMesh::Vertex_handle Foam::cellShapeControlMesh::insertFar
-(
- const Foam::point& pt
-)
-{
- Vertex_handle v = CellSizeDelaunay::insert
- (
- Point(pt.x(), pt.y(), pt.z())
- );
- v->type() = Vb::vtFar;
-// v->type() = Vb::vtExternalFeaturePoint;
- v->index() = getNewVertexIndex();
- v->procIndex() = Pstream::myProcNo();
-
- return v;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl.C
deleted file mode 100644
index 31d5d614062d17e601f92fbaff116cd05019ac98..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl.C
+++ /dev/null
@@ -1,120 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "cellSizeAndAlignmentControl.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-defineTypeNameAndDebug(cellSizeAndAlignmentControl, 0);
-defineRunTimeSelectionTable(cellSizeAndAlignmentControl, dictionary);
-
-}
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::cellSizeAndAlignmentControl::cellSizeAndAlignmentControl
-(
- const Time& runTime,
- const word& name,
- const dictionary& controlFunctionDict,
- const conformationSurfaces& allGeometry
-)
-:
- runTime_(runTime),
- name_(name)
-{}
-
-
-// * * * * * * * * * * * * * * * * * Selectors * * * * * * * * * * * * * * * //
-
-Foam::autoPtr<Foam::cellSizeAndAlignmentControl>
-Foam::cellSizeAndAlignmentControl::New
-(
- const Time& runTime,
- const word& name,
- const dictionary& controlFunctionDict,
- const conformationSurfaces& allGeometry
-)
-{
- word cellSizeAndAlignmentControlTypeName
- (
- controlFunctionDict.lookup("type")
- );
-
- Info<< nl << "Selecting cellSizeAndAlignmentControl "
- << cellSizeAndAlignmentControlTypeName << endl;
-
- dictionaryConstructorTable::iterator cstrIter =
- dictionaryConstructorTablePtr_->find
- (
- cellSizeAndAlignmentControlTypeName
- );
-
- if (cstrIter == dictionaryConstructorTablePtr_->end())
- {
- FatalErrorIn
- (
- "cellSizeAndAlignmentControl::New()"
- ) << "Unknown cellSizeAndAlignmentControl type "
- << cellSizeAndAlignmentControlTypeName
- << endl << endl
- << "Valid cellSizeAndAlignmentControl types are :" << endl
- << dictionaryConstructorTablePtr_->toc()
- << exit(FatalError);
- }
-
- return autoPtr<cellSizeAndAlignmentControl>
- (
- cstrIter()
- (
- runTime,
- name,
- controlFunctionDict,
- allGeometry
- )
- );
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::cellSizeAndAlignmentControl::~cellSizeAndAlignmentControl()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl.H
deleted file mode 100644
index 243211929edc2e19a22651d0f2b381184de84107..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControl.H
+++ /dev/null
@@ -1,160 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::cellSizeAndAlignmentControl
-
-Description
-
-SourceFiles
- cellSizeAndAlignmentControlI.H
- cellSizeAndAlignmentControl.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef cellSizeAndAlignmentControl_H
-#define cellSizeAndAlignmentControl_H
-
-#include "dictionary.H"
-#include "conformationSurfaces.H"
-#include "Time.H"
-#include "quaternion.H"
-#include "triadField.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-
-/*---------------------------------------------------------------------------*\
- Class cellSizeAndAlignmentControl Declaration
-\*---------------------------------------------------------------------------*/
-
-class cellSizeAndAlignmentControl
-{
-protected:
-
- const Time& runTime_;
-
-
-private:
-
- // Private data
-
- const word name_;
-
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- cellSizeAndAlignmentControl(const cellSizeAndAlignmentControl&);
-
- //- Disallow default bitwise assignment
- void operator=(const cellSizeAndAlignmentControl&);
-
-
-public:
-
- //- Runtime type information
- TypeName("cellSizeAndAlignmentControl");
-
-
- // Declare run-time constructor selection table
-
- declareRunTimeSelectionTable
- (
- autoPtr,
- cellSizeAndAlignmentControl,
- dictionary,
- (
- const Time& runTime,
- const word& name,
- const dictionary& controlFunctionDict,
- const conformationSurfaces& allGeometry
- ),
- (runTime, name, controlFunctionDict, allGeometry)
- );
-
-
- // Constructors
-
- //- Construct from dictionary and references to conformalVoronoiMesh and
- // searchableSurfaces
- cellSizeAndAlignmentControl
- (
- const Time& runTime,
- const word& name,
- const dictionary& controlFunctionDict,
- const conformationSurfaces& allGeometry
- );
-
-
- // Selectors
-
- //- Return a reference to the selected cellShapeControl
- static autoPtr<cellSizeAndAlignmentControl> New
- (
- const Time& runTime,
- const word& name,
- const dictionary& controlFunctionDict,
- const conformationSurfaces& allGeometry
- );
-
-
- //- Destructor
- virtual ~cellSizeAndAlignmentControl();
-
-
- // Member Functions
-
- // Access
-
- const word& name() const
- {
- return name_;
- }
-
- virtual label priority() const = 0;
-
-
- // Query
-
- virtual void initialVertices
- (
- pointField& pts,
- scalarField& sizes,
- triadField& alignments
- ) const = 0;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControls.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControls.C
deleted file mode 100644
index 515482689dcd9a1b5a5f89118b9222d74762f488..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControls.C
+++ /dev/null
@@ -1,177 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "cellSizeAndAlignmentControls.H"
-#include "searchableSurfaceControl.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-defineTypeNameAndDebug(cellSizeAndAlignmentControls, 0);
-
-}
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-bool Foam::cellSizeAndAlignmentControls::evalCellSizeFunctions
-(
- const point& pt,
- scalar& minSize
-) const
-{
- bool anyFunctionFound = false;
-
- // Regions requesting with the same priority take the smallest
-
- if (controlFunctions_.size())
- {
- // Maintain priority of current hit. Initialise so it always goes
- // through at least once.
- label previousPriority = -1;
-
- forAll(controlFunctions_, i)
- {
- const cellSizeAndAlignmentControl& cSF = controlFunctions_[i];
-
- if (isA<searchableSurfaceControl>(cSF))
- {
- const searchableSurfaceControl& sSC =
- refCast<const searchableSurfaceControl>(cSF);
-
- if (debug)
- {
- Info<< "size function "
- << sSC.name()
- << " priority " << sSC.priority()
- << endl;
- }
-
- if (sSC.priority() < previousPriority)
- {
- return minSize;
- }
-
- scalar sizeI;
-
- if (sSC.sizeFunction().cellSize(pt, sizeI))
- {
- anyFunctionFound = true;
-
- if (sSC.priority() == previousPriority)
- {
- if (sizeI < minSize)
- {
- minSize = sizeI;
- }
- }
- else
- {
- minSize = sizeI;
- }
-
- if (debug)
- {
- Info<< "sizeI " << sizeI
- <<" minSize " << minSize << endl;
- }
-
- previousPriority = sSC.priority();
- }
- }
- }
- }
-
- return anyFunctionFound;
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::cellSizeAndAlignmentControls::cellSizeAndAlignmentControls
-(
- const Time& runTime,
- const dictionary& shapeControlDict,
- const conformationSurfaces& allGeometry,
- const scalar defaultCellSize
-)
-:
- shapeControlDict_(shapeControlDict),
- allGeometry_(allGeometry),
- controlFunctions_(shapeControlDict_.size()),
- defaultCellSize_(defaultCellSize)
-{
- label functionI = 0;
-
- forAllConstIter(dictionary, shapeControlDict_, iter)
- {
- word shapeControlEntryName = iter().keyword();
-
- const dictionary& controlFunctionDict
- (
- shapeControlDict_.subDict(shapeControlEntryName)
- );
-
- controlFunctions_.set
- (
- functionI,
- cellSizeAndAlignmentControl::New
- (
- runTime,
- shapeControlEntryName,
- controlFunctionDict,
- allGeometry
- )
- );
-
- functionI++;
- }
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::cellSizeAndAlignmentControls::~cellSizeAndAlignmentControls()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-Foam::scalar Foam::cellSizeAndAlignmentControls::cellSize
-(
- const point& pt
-) const
-{
- scalar size = defaultCellSize_;
-
- evalCellSizeFunctions(pt, size);
-
- return size;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControls.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControls.H
deleted file mode 100644
index 76e6c801dd845c0b20375a1761282452bb3ec74b..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/cellSizeAndAlignmentControls.H
+++ /dev/null
@@ -1,119 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::cellSizeAndAlignmentControls
-
-Description
-
-SourceFiles
- cellSizeAndAlignmentControls.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef cellSizeAndAlignmentControls_H
-#define cellSizeAndAlignmentControls_H
-
-#include "dictionary.H"
-#include "cellSizeAndAlignmentControl.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class cellSizeAndAlignmentControls Declaration
-\*---------------------------------------------------------------------------*/
-
-class cellSizeAndAlignmentControls
-{
- // Private data
-
- const dictionary& shapeControlDict_;
-
- const conformationSurfaces& allGeometry_;
-
- PtrList<cellSizeAndAlignmentControl> controlFunctions_;
-
- const scalar defaultCellSize_;
-
-
- // Private Member Functions
-
- bool evalCellSizeFunctions(const point& pt, scalar& minSize) const;
-
- //- Disallow default bitwise copy construct
- cellSizeAndAlignmentControls(const cellSizeAndAlignmentControls&);
-
- //- Disallow default bitwise assignment
- void operator=(const cellSizeAndAlignmentControls&);
-
-
-public:
-
- //- Runtime type information
- ClassName("cellSizeAndAlignmentControls");
-
-
- // Constructors
-
- //- Construct from dictionary
- cellSizeAndAlignmentControls
- (
- const Time& runTime,
- const dictionary& shapeControlDict,
- const conformationSurfaces& allGeometry,
- const scalar defaultCellSize
- );
-
-
- //- Destructor
- virtual ~cellSizeAndAlignmentControls();
-
-
- // Member Functions
-
- // Access
-
- const PtrList<cellSizeAndAlignmentControl>& controlFunctions() const
- {
- return controlFunctions_;
- }
-
-
- // Query
-
- scalar cellSize(const point& pt) const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/fileControl/fileControl.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/fileControl/fileControl.C
deleted file mode 100644
index 9b86dbf2ba643fb6c563cd2774eaf6c39e42129b..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/fileControl/fileControl.C
+++ /dev/null
@@ -1,242 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "fileControl.H"
-#include "addToRunTimeSelectionTable.H"
-#include "tetrahedron.H"
-#include "scalarList.H"
-#include "vectorTools.H"
-#include "pointIOField.H"
-#include "scalarIOField.H"
-#include "triadIOField.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-defineTypeNameAndDebug(fileControl, 0);
-addToRunTimeSelectionTable
-(
- cellSizeAndAlignmentControl,
- fileControl,
- dictionary
-);
-
-}
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::fileControl::fileControl
-(
- const Time& runTime,
- const word& name,
- const dictionary& controlFunctionDict,
- const conformationSurfaces& allGeometry
-)
-:
- cellSizeAndAlignmentControl
- (
- runTime,
- name,
- controlFunctionDict,
- allGeometry
- ),
- pointsFile_(controlFunctionDict.lookup("pointsFile")),
- sizesFile_(controlFunctionDict.lookup("sizesFile")),
- alignmentsFile_(controlFunctionDict.lookup("alignmentsFile")),
- priority_(readLabel(controlFunctionDict.lookup("priority")))
-{
- Info<< indent << "Loading from file... " << nl
- << indent << " points : " << pointsFile_ << nl
- << indent << " sizes : " << sizesFile_ << nl
- << indent << " alignments : " << alignmentsFile_
- << endl;
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::fileControl::~fileControl()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-//
-//Foam::scalar Foam::fileControl::cellSize(const point& pt) const
-//{
-// scalarList bary;
-// Cell_handle ch;
-//
-// triangulatedMesh_.barycentricCoords(pt, bary, ch);
-//
-// scalar size = 0;
-// forAll(bary, pI)
-// {
-// size += bary[pI]*ch->vertex(pI)->size();
-// }
-//
-// return size;
-//}
-//
-//
-////- Return the cell alignment at the given location
-//Foam::tensor Foam::fileControl::cellAlignment(const point& pt) const
-//{
-// scalarList bary;
-// Cell_handle ch;
-//
-// triangulatedMesh_.barycentricCoords(pt, bary, ch);
-//
-// label nearest = 0;
-//
-// tensor alignment = Foam::tensor::zero;
-// forAll(bary, pI)
-// {
-// //alignment += bary[pI]*ch->vertex(pI)->alignment();
-//
-// // Find nearest point
-// if (bary[pI] > nearest)
-// {
-// alignment = ch->vertex(pI)->alignment();
-// nearest = bary[pI];
-// }
-// }
-//
-// return alignment;
-//}
-//
-//
-////- Return the cell alignment at the given location
-//void Foam::fileControl::cellSizeAndAlignment
-//(
-// const point& pt,
-// scalar& size,
-// tensor& alignment
-//) const
-//{
-// scalarList bary;
-// Cell_handle ch;
-//
-// triangulatedMesh_.barycentricCoords(pt, bary, ch);
-//
-// size = 0;
-// forAll(bary, pI)
-// {
-// size += bary[pI]*ch->vertex(pI)->size();
-// }
-//
-//// alignment = Foam::tensor::zero;
-//// forAll(bary, pI)
-//// {
-//// alignment += bary[pI]*ch->vertex(pI)->alignment();
-//// }
-//
-// alignment = cellAlignment(pt);
-//}
-
-void Foam::fileControl::initialVertices
-(
- pointField& pts,
- scalarField& sizes,
- triadField& alignments
-) const
-{
- Info<< " Reading points from file : " << pointsFile_ << endl;
-
- pointIOField pointsTmp
- (
- IOobject
- (
- pointsFile_,
- runTime_.constant(),
- runTime_,
- IOobject::MUST_READ,
- IOobject::NO_WRITE,
- false
- )
- );
-
- pts.transfer(pointsTmp);
-
- Info<< " Reading sizes from file : " << sizesFile_ << endl;
-
- scalarIOField sizesTmp
- (
- IOobject
- (
- sizesFile_,
- runTime_.constant(),
- runTime_,
- IOobject::MUST_READ,
- IOobject::NO_WRITE,
- false
- )
- );
-
- sizes.transfer(sizesTmp);
-
- Info<< " Reading alignments from file : " << alignmentsFile_ << endl;
-
- triadIOField alignmentsTmp
- (
- IOobject
- (
- alignmentsFile_,
- runTime_.constant(),
- runTime_,
- IOobject::MUST_READ,
- IOobject::NO_WRITE,
- false
- )
- );
-
- alignments.transfer(alignmentsTmp);
-
- if ((pts.size() != sizes.size()) || (pts.size() != alignments.size()))
- {
- FatalErrorIn
- (
- "Foam::fileControl::initialVertices"
- "("
- " pointField&,"
- " scalarField&,"
- " Field<triad>&"
- ")"
- ) << "Size of list of points, sizes and alignments do not match:"
- << nl
- << "Points size = " << pts.size() << nl
- << "Sizes size = " << sizes.size() << nl
- << "Alignments size = " << alignments.size()
- << abort(FatalError);
- }
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/fileControl/fileControl.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/fileControl/fileControl.H
deleted file mode 100644
index f06892680d69ef3c70ea77976854b2125b0b00c7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/fileControl/fileControl.H
+++ /dev/null
@@ -1,140 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::fileControl
-
-Description
-
-SourceFiles
- fileControl.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef fileControl_H
-#define fileControl_H
-
-#include "cellSizeAndAlignmentControl.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-
-/*---------------------------------------------------------------------------*\
- Class fileControl Declaration
-\*---------------------------------------------------------------------------*/
-
-class fileControl
-:
- public cellSizeAndAlignmentControl
-{
- // Private data
-
- const fileName pointsFile_;
-
- const fileName sizesFile_;
-
- const fileName alignmentsFile_;
-
- label priority_;
-
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- fileControl(const fileControl&);
-
- //- Disallow default bitwise assignment
- void operator=(const fileControl&);
-
-
-public:
-
- //- Runtime type information
- TypeName("fileControl");
-
-
- // Constructors
-
- //- Construct from dictionary and references to conformalVoronoiMesh and
- // searchableSurfaces
- fileControl
- (
- const Time& runTime,
- const word& name,
- const dictionary& controlFunctionDict,
- const conformationSurfaces& allGeometry
- );
-
- //- Destructor
- ~fileControl();
-
-
- // Member Functions
-
- // Access
-
-
- // Query
-
-// //- Return the cell size at the given location
-// virtual scalar cellSize(const point& pt) const;
-//
-// //- Return the cell alignment at the given location
-// virtual tensor cellAlignment(const point& pt) const;
-//
-// virtual void cellSizeAndAlignment
-// (
-// const point& pt,
-// scalar& size,
-// tensor& alignment
-// ) const;
-
-
- // Edit
-
- virtual void initialVertices
- (
- pointField& pts,
- scalarField& sizes,
- triadField& alignments
- ) const;
-
- virtual label priority() const
- {
- return priority_;
- }
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/searchableSurfaceControl/searchableSurfaceControl.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/searchableSurfaceControl/searchableSurfaceControl.C
deleted file mode 100644
index 0f2a4f6d8c76cf39d69e4890af63af4f9590e321..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/searchableSurfaceControl/searchableSurfaceControl.C
+++ /dev/null
@@ -1,666 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "searchableSurfaceControl.H"
-#include "addToRunTimeSelectionTable.H"
-#include "cellSizeFunction.H"
-#include "triSurfaceMesh.H"
-#include "searchableBox.H"
-#include "tetrahedron.H"
-#include "vectorTools.H"
-#include "quaternion.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-defineTypeNameAndDebug(searchableSurfaceControl, 0);
-addToRunTimeSelectionTable
-(
- cellSizeAndAlignmentControl,
- searchableSurfaceControl,
- dictionary
-);
-
-}
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-//Foam::tensor Foam::surfaceControl::requiredAlignment
-//(
-// const Foam::point& pt,
-// const vectorField& ptNormals
-//) const
-//{
-//// pointIndexHit surfHit;
-//// label hitSurface;
-////
-//// geometryToConformTo_.findSurfaceNearest
-//// (
-//// pt,
-//// sqr(GREAT),
-//// surfHit,
-//// hitSurface
-//// );
-////
-//// if (!surfHit.hit())
-//// {
-//// FatalErrorIn
-//// (
-//// "Foam::tensor Foam::conformalVoronoiMesh::requiredAlignment"
-//// )
-//// << "findSurfaceNearest did not find a hit across the surfaces."
-//// << exit(FatalError) << endl;
-//// }
-////
-////// Primary alignment
-////
-//// vectorField norm(1);
-////
-//// allGeometry_[hitSurface].getNormal
-//// (
-//// List<pointIndexHit>(1, surfHit),
-//// norm
-//// );
-////
-//// const vector np = norm[0];
-////
-//// const tensor Rp = rotationTensor(vector(0,0,1), np);
-////
-//// return (Rp);
-//
-//// Info<< "Point : " << pt << endl;
-//// forAll(ptNormals, pnI)
-//// {
-//// Info<< " normal " << pnI << " : " << ptNormals[pnI] << endl;
-//// }
-//
-// vector np = ptNormals[0];
-//
-// const tensor Rp = rotationTensor(vector(0,0,1), np);
-//
-// vector na = vector::zero;
-//
-// scalar smallestAngle = GREAT;
-//
-// for (label pnI = 1; pnI < ptNormals.size(); ++pnI)
-// {
-// const vector& nextNormal = ptNormals[pnI];
-//
-// const scalar cosPhi = vectorTools::cosPhi(np, nextNormal);
-//
-// if (mag(cosPhi) < smallestAngle)
-// {
-// na = nextNormal;
-// smallestAngle = cosPhi;
-// }
-// }
-//
-// // Secondary alignment
-// vector ns = np ^ na;
-//
-// if (mag(ns) < SMALL)
-// {
-// WarningIn("conformalVoronoiMesh::requiredAlignment")
-// << "Parallel normals detected in spoke search." << nl
-// << "point: " << pt << nl
-// << "np : " << np << nl
-// << "na : " << na << nl
-// << "ns : " << ns << nl
-// << endl;
-//
-// ns = np;
-// }
-//
-// ns /= mag(ns);
-//
-// tensor Rs = rotationTensor((Rp & vector(0,1,0)), ns);
-//
-//// Info<< "Point " << pt << nl
-//// << " np : " << np << nl
-//// << " ns : " << ns << nl
-//// << " Rp : " << Rp << nl
-//// << " Rs : " << Rs << nl
-//// << " Rs&Rp: " << (Rs & Rp) << endl;
-//
-// return (Rs & Rp);
-//}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::searchableSurfaceControl::searchableSurfaceControl
-(
- const Time& runTime,
- const word& name,
- const dictionary& controlFunctionDict,
- const conformationSurfaces& allGeometry
-)
-:
- cellSizeAndAlignmentControl
- (
- runTime,
- name,
- controlFunctionDict,
- allGeometry
- ),
- surfaceName_(controlFunctionDict.lookupOrDefault<word>("surface", name)),
- searchableSurface_(allGeometry.geometry()[surfaceName_]),
- allGeometry_(allGeometry),
- cellSizeFunction_
- (
- cellSizeFunction::New(controlFunctionDict, searchableSurface_)
- )
-// geometryToConformTo_(geometryToConformTo),
-// surfaces_(),
-// cellSizeFunctions_(),
-// triangulatedMesh_()
-{
-// const dictionary& surfacesDict = coeffDict();
-//
-// Info<< nl << "Reading cellSizeControlGeometry" << endl;
-//
-// surfaces_.setSize(surfacesDict.size());
-//
-// cellSizeFunctions_.setSize(surfacesDict.size());
-//
-// label surfI = 0;
-//
-// DynamicList<point> pointsToInsert;
-// DynamicList<scalar> sizesToInsert;
-// DynamicList<tensor> alignmentsToInsert;
-//
-// forAllConstIter(dictionary, surfacesDict, iter)
-// {
-// const dictionary& surfaceSubDict
-// (
-// surfacesDict.subDict(iter().keyword())
-// );
-//
-// // If the "surface" keyword is not found in the dictionary, assume
-// // the name of the dictionary is the surface. Distinction required to
-// // allow the same surface to be used multiple times to supply multiple
-// // cellSizeFunctions
-//
-// word surfaceName = surfaceSubDict.lookupOrDefault<word>
-// (
-// "surface",
-// iter().keyword()
-// );
-//
-// surfaces_[surfI] = allGeometry_.findSurfaceID(surfaceName);
-//
-// if (surfaces_[surfI] < 0)
-// {
-// FatalErrorIn
-// (
-// "Foam::surfaceControl::surfaceControl"
-// ) << "No surface " << surfaceName << " found. "
-// << "Valid geometry is " << nl << allGeometry_.names()
-// << exit(FatalError);
-// }
-//
-// const searchableSurface& surface = allGeometry_[surfaces_[surfI]];
-//
-// Info<< nl << " " << iter().keyword() << nl
-// << " surface: " << surfaceName << nl
-// << " size : " << surface.size() << endl;
-//
-// cellSizeFunctions_.set
-// (
-// surfI,
-// cellSizeFunction::New
-// (
-// surfaceSubDict,
-// surface
-// )
-// );
-//
-// surfI++;
-//
-// if (isA<triSurfaceMesh>(surface))
-// {
-// const triSurfaceMesh& tsm
-// = refCast<const triSurfaceMesh>(surface);
-//
-// const pointField& points = tsm.points();
-// const vectorField& faceNormals = tsm.faceNormals();
-// const labelListList& pointFaces = tsm.pointFaces();
-//
-// Info<< " Number of points: " << tsm.nPoints() << endl;
-//
-// forAll(points, pI)
-// {
-// const Foam::point& pt = points[pI];
-// const labelList& ptFaces = pointFaces[pI];
-//
-// vectorField pointNormals(ptFaces.size());
-//
-// forAll(pointNormals, pnI)
-// {
-// pointNormals[pnI] = faceNormals[ptFaces[pnI]];
-// }
-//
-// pointsToInsert.append(pt);
-//
-// // Get the value of the point from surfaceCellSizeFunction. If
-// // adding points internally then will need to interpolate.
-// scalar newSize = 0;
-//
-// cellSizeFunctions_[surfI - 1].cellSize(pt, newSize);
-// sizesToInsert.append(newSize);
-//
-// tensor newAlignment = requiredAlignment(pt, pointNormals);
-//
-// alignmentsToInsert.append(newAlignment);
-// }
-// }
-// }
-//
-// // Add the global bound box to ensure that all internal point queries
-// // will return sizes and alignments
-//// boundBox bb = allGeometry_.bounds();
-////
-//// pointField bbPoints = bb.points();
-////
-//// forAll(bbPoints, pI)
-//// {
-//// pointsToInsert.append(bbPoints[pI]);
-//// sizesToInsert.append(defaultCellSize());
-//// alignmentsToInsert.append(tensor(1,0,0,0,1,0,0,0,1));
-//// }
-//
-// triangulatedMesh_.set
-// (
-// new triangulatedMesh
-// (
-// runTime,
-// pointsToInsert,
-// sizesToInsert,
-// alignmentsToInsert,
-// defaultCellSize()
-// )
-// );
-//
-// scalar factor = 1.0;
-// label maxIteration = cellShapeControlDict.lookupOrDefault<label>
-// (
-// "maxRefinementIterations", 1
-// );
-//
-//
-// for (label iteration = 0; iteration < maxIteration; ++iteration)
-// {
-// Info<< "Iteration : " << iteration << endl;
-//
-// label nRefined = triangulatedMesh_().refineTriangulation
-// (
-// factor,
-// allGeometry_,
-// geometryToConformTo_
-// );
-//
-// Info<< " Number of cells refined in refinement iteration : "
-// << nRefined << nl << endl;
-//
-// if (nRefined <= 0 && iteration != 0)
-// {
-// break;
-// }
-//
-// factor *= 1.5;
-// }
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::searchableSurfaceControl::~searchableSurfaceControl()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-//Foam::scalar Foam::surfaceControl::cellSize(const point& pt) const
-//{
-// scalarList bary;
-// Cell_handle ch;
-//
-// triangulatedMesh_().barycentricCoords(pt, bary, ch);
-//
-// scalar size = 0;
-// forAll(bary, pI)
-// {
-// size += bary[pI]*ch->vertex(pI)->size();
-// }
-//
-// return size;
-//}
-//
-//
-////- Return the cell alignment at the given location
-//Foam::tensor Foam::surfaceControl::cellAlignment(const point& pt) const
-//{
-// scalarList bary;
-// Cell_handle ch;
-//
-// triangulatedMesh_().barycentricCoords(pt, bary, ch);
-//
-//// vectorField cartesianDirections(3);
-////
-//// cartesianDirections[0] = vector(0,0,1);
-//// cartesianDirections[1] = vector(0,1,0);
-//// cartesianDirections[2] = vector(1,0,0);
-////
-//// // Rearrange each alignment tensor so that the x/y/z components are
-//// // in order of whichever makes the smallest angle with the global
-//// // coordinate system
-//// FixedList<tensor, 4> alignments;
-////
-//// forAll(alignments, aI)
-//// {
-//// tensor a = ch->vertex(aI)->alignment();
-////
-//// tensor tmpA = a;
-////
-////// Info<< nl << indent<< a << endl;
-////
-//// scalar minAngle = 0;
-////
-//// scalar axx = vectorTools::cosPhi(a.x(), cartesianDirections[0]);
-//// scalar axy = vectorTools::cosPhi(a.y(), cartesianDirections[0]);
-//// scalar axz = vectorTools::cosPhi(a.z(), cartesianDirections[0]);
-////
-//// scalar ayx = vectorTools::cosPhi(a.x(), cartesianDirections[1]);
-//// scalar ayy = vectorTools::cosPhi(a.y(), cartesianDirections[1]);
-//// scalar ayz = vectorTools::cosPhi(a.z(), cartesianDirections[1]);
-////
-//// scalar azx = vectorTools::cosPhi(a.x(), cartesianDirections[2]);
-//// scalar azy = vectorTools::cosPhi(a.y(), cartesianDirections[2]);
-//// scalar azz = vectorTools::cosPhi(a.z(), cartesianDirections[2]);
-////
-////// Info<< indent << axx << " " << axy << " " << axz << nl
-////// << indent << ayx << " " << ayy << " " << ayz << nl
-////// << indent << azx << " " << azy << " " << azz << endl;
-////
-//// if (mag(axx) >= minAngle)
-//// {
-//// tmpA.xx() = mag(a.xx());
-//// tmpA.xy() = mag(a.xy());
-//// tmpA.xz() = mag(a.xz());
-//// minAngle = mag(axx);
-//// }
-//// if (mag(axy) >= minAngle)
-//// {
-//// tmpA.xx() = mag(a.yx());
-//// tmpA.xy() = mag(a.yy());
-//// tmpA.xz() = mag(a.yz());
-//// minAngle = mag(axy);
-//// }
-//// if (mag(axz) >= minAngle)
-//// {
-//// tmpA.xx() = mag(a.zx());
-//// tmpA.xy() = mag(a.zy());
-//// tmpA.xz() = mag(a.zz());
-//// }
-////
-//// minAngle = 0;
-////
-//// if (mag(ayx) >= minAngle)
-//// {
-//// tmpA.yx() = mag(a.xx());
-//// tmpA.yy() = mag(a.xy());
-//// tmpA.yz() = mag(a.xz());
-//// minAngle = mag(ayx);
-//// }
-//// if (mag(ayy) >= minAngle)
-//// {
-//// tmpA.yx() = mag(a.yx());
-//// tmpA.yy() = mag(a.yy());
-//// tmpA.yz() = mag(a.yz());
-//// minAngle = mag(ayy);
-//// }
-//// if (mag(ayz) >= minAngle)
-//// {
-//// tmpA.yx() = mag(a.zx());
-//// tmpA.yy() = mag(a.zy());
-//// tmpA.yz() = mag(a.zz());
-//// }
-////
-//// minAngle = 0;
-////
-//// if (mag(azx) >= minAngle)
-//// {
-//// tmpA.zx() = mag(a.xx());
-//// tmpA.zy() = mag(a.xy());
-//// tmpA.zz() = mag(a.xz());
-//// minAngle = mag(azx);
-//// }
-//// if (mag(azy) >= minAngle)
-//// {
-//// tmpA.zx() = mag(a.yx());
-//// tmpA.zy() = mag(a.yy());
-//// tmpA.zz() = mag(a.yz());
-//// minAngle = mag(azy);
-//// }
-//// if (mag(azz) >= minAngle)
-//// {
-//// tmpA.zx() = mag(a.zx());
-//// tmpA.zy() = mag(a.zy());
-//// tmpA.zz() = mag(a.zz());
-//// }
-////
-//// alignments[aI] = tmpA;
-//// }
-//
-// scalar nearest = 0;
-//
-//// Info<< nl << "Point " << pt << endl;
-////
-//// FixedList<quaternion, 4> qAlignments;
-//// forAll(qAlignments, aI)
-//// {
-////// Info<< " Direction " << aI << endl;
-////// Info<< " Rot tensor" << alignments[aI] << endl;
-//// qAlignments[aI] = quaternion(alignments[aI]);
-//// qAlignments[aI].normalize();
-////// Info<< " Quaternion: " << qAlignments[aI] << endl;
-////// Info<< " Rot tensor from quat: " << qAlignments[aI].R()
-////// << endl;
-//// }
-//
-// tensor alignment = Foam::tensor::zero;
-// forAll(bary, pI)
-// {
-//// alignment += bary[pI]*ch->vertex(pI)->alignment();
-//
-//// alignment += bary[pI]*alignments[pI];
-//
-// // Try slerp with quaternions
-//
-// // Find nearest point
-// if (bary[pI] > nearest)
-// {
-// alignment = ch->vertex(pI)->alignment();
-// nearest = bary[pI];
-// }
-// }
-//
-//// quaternion alignment;
-//
-//// alignment = qAlignments[0]*bary[0]
-//// + qAlignments[1]*bary[1]
-//// + qAlignments[2]*bary[2]
-//// + qAlignments[3]*bary[3];
-//
-//// alignment =
-//// slerp(qAlignments[0], qAlignments[1], bary[0]+bary[1]+bary[2]);
-//// alignment = slerp(alignment, qAlignments[2], bary[0]+bary[1]+bary[2]);
-//// alignment = slerp(alignment, qAlignments[3], bary[0]+bary[1]+bary[2]);
-//// alignment =
-//// slerp(alignment, qAlignments[0], bary[0]/(bary[0]+bary[1]+bary[2]));
-//
-//// Info<< " Interp alignment : " << alignment << endl;
-//// Info<< " Interp rot tensor: " << alignment.R() << endl;
-//
-// return alignment;
-//}
-//
-//
-//void Foam::surfaceControl::cellSizeAndAlignment
-//(
-// const point& pt,
-// scalar& size,
-// tensor& alignment
-//) const
-//{
-// scalarList bary;
-// Cell_handle ch;
-//
-// triangulatedMesh_().barycentricCoords(pt, bary, ch);
-//
-// size = 0;
-// forAll(bary, pI)
-// {
-// size += bary[pI]*ch->vertex(pI)->size();
-// }
-//
-//// alignment = Foam::tensor::zero;
-//// forAll(bary, pI)
-//// {
-//// alignment += bary[pI]*ch->vertex(pI)->alignment();
-//// }
-//
-// alignment = cellAlignment(pt);
-//}
-
-void Foam::searchableSurfaceControl::initialVertices
-(
- pointField& pts,
- scalarField& sizes,
- triadField& alignments
-) const
-{
- pts = searchableSurface_.points();
- sizes.setSize(pts.size());
- alignments.setSize(pts.size());
-
- const scalar nearFeatDistSqrCoeff = 1e-8;
-
- forAll(pts, pI)
- {
- // Is the point in the extendedFeatureEdgeMesh? If so get the
- // point normal, otherwise get the surface normal from
- // searchableSurface
-
- pointIndexHit info;
- label infoFeature;
- allGeometry_.findFeaturePointNearest
- (
- pts[pI],
- nearFeatDistSqrCoeff,
- info,
- infoFeature
- );
-
- autoPtr<triad> pointAlignment;
-
- if (info.hit())
- {
- const extendedFeatureEdgeMesh& features =
- allGeometry_.features()[infoFeature];
-
- vectorField norms = features.featurePointNormals(info.index());
-
- // Create a triad from these norms.
- pointAlignment.set(new triad());
- forAll(norms, nI)
- {
- pointAlignment() += norms[nI];
- }
-
- pointAlignment().normalize();
- pointAlignment().orthogonalize();
- }
- else
- {
- allGeometry_.findEdgeNearest
- (
- pts[pI],
- nearFeatDistSqrCoeff,
- info,
- infoFeature
- );
-
- if (info.hit())
- {
- const extendedFeatureEdgeMesh& features =
- allGeometry_.features()[infoFeature];
-
- vectorField norms = features.edgeNormals(info.index());
-
- // Create a triad from these norms.
- pointAlignment.set(new triad());
- forAll(norms, nI)
- {
- pointAlignment() += norms[nI];
- }
-
- pointAlignment().normalize();
- pointAlignment().orthogonalize();
- }
- else
- {
- pointField ptField(1, pts[pI]);
- scalarField distField(1, nearFeatDistSqrCoeff);
- List<pointIndexHit> infoList(1, pointIndexHit());
-
- searchableSurface_.findNearest(ptField, distField, infoList);
-
- vectorField normals(1);
- searchableSurface_.getNormal(infoList, normals);
-
- pointAlignment.set(new triad(normals[0]));
- }
- }
-
- if (!cellSizeFunction_().cellSize(pts[pI], sizes[pI]))
- {
- FatalErrorIn
- (
- "Foam::searchableSurfaceControl::initialVertices"
- "(pointField&, scalarField&, tensorField&)"
- ) << "Could not calculate cell size"
- << abort(FatalError);
- }
-
- alignments[pI] = pointAlignment();
- }
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/searchableSurfaceControl/searchableSurfaceControl.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/searchableSurfaceControl/searchableSurfaceControl.H
deleted file mode 100644
index 7edc26cdc4cbdff5187f0c528c1000e59c6562f7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellShapeControl/cellSizeAndAlignmentControl/searchableSurfaceControl/searchableSurfaceControl.H
+++ /dev/null
@@ -1,173 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::searchableSurfaceControl
-
-Description
-
-SourceFiles
- searchableSurfaceControl.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef searchableSurfaceControl_H
-#define searchableSurfaceControl_H
-
-#include "cellSizeFunction.H"
-#include "triad.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-
-/*---------------------------------------------------------------------------*\
- Class surfaceControl Declaration
-\*---------------------------------------------------------------------------*/
-
-class searchableSurfaceControl
-:
- public cellSizeAndAlignmentControl
-{
- // Private data
-
- //- Name of the surface
- const word surfaceName_;
-
- //- Reference to the searchableSurface object holding the geometry data
- const searchableSurface& searchableSurface_;
-
- const conformationSurfaces& allGeometry_;
-
- autoPtr<cellSizeFunction> cellSizeFunction_;
-
-
-// const conformationSurfaces& geometryToConformTo_;
-//
-// //- Indices of surfaces in allGeometry that are to be conformed to
-// labelList surfaces_;
-//
-// //- A list of all of the cellSizeFunction objects
-// PtrList<cellSizeFunction> cellSizeFunctions_;
-//
-// autoPtr<triangulatedMesh> triangulatedMesh_;
-//
-//
-// // Private Member Functions
-//
-// //-
-// tensor requiredAlignment
-// (
-// const point& pt,
-// const vectorField& ptNormals
-// ) const;
-
- //- Disallow default bitwise copy construct
- searchableSurfaceControl(const searchableSurfaceControl&);
-
- //- Disallow default bitwise assignment
- void operator=(const searchableSurfaceControl&);
-
-
-public:
-
- //- Runtime type information
- TypeName("searchableSurfaceControl");
-
-
- // Constructors
-
- //- Construct from dictionary and references to conformalVoronoiMesh and
- // searchableSurfaces
- searchableSurfaceControl
- (
- const Time& runTime,
- const word& name,
- const dictionary& controlFunctionDict,
- const conformationSurfaces& allGeometry
- );
-
- //- Destructor
- ~searchableSurfaceControl();
-
-
- // Member Functions
-
- // Access
-
-// //- Return reference to the searchableSurfaces object containing
-// // all of the geometry
-// inline const searchableSurfaces& geometry() const;
-//
-// //- Return the surface indices
-// inline const labelList& surfaces() const;
-//
-//
-// // Query
-//
-// //- Return the cell size at the given location
-// virtual scalar cellSize(const point& pt) const;
-//
-// //- Return the cell alignment at the given location
-// virtual tensor cellAlignment(const point& pt) const;
-//
-// virtual void cellSizeAndAlignment
-// (
-// const point& pt,
-// scalar& size,
-// tensor& alignment
-// ) const;
-
- virtual void initialVertices
- (
- pointField& pts,
- scalarField& sizes,
- triadField& alignments
- ) const;
-
- const cellSizeFunction& sizeFunction() const
- {
- return cellSizeFunction_();
- }
-
- virtual label priority() const
- {
- return cellSizeFunction_().priority();
- }
-
- // Edit
-
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/cellSizeFunction/cellSizeFunction.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/cellSizeFunction/cellSizeFunction.C
deleted file mode 100644
index 5b35e7b301bb4d659be1bb46a4b5ce1021750ad0..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/cellSizeFunction/cellSizeFunction.C
+++ /dev/null
@@ -1,146 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "cellSizeFunction.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
- defineTypeNameAndDebug(cellSizeFunction, 0);
- defineRunTimeSelectionTable(cellSizeFunction, dictionary);
-
- scalar cellSizeFunction::snapToSurfaceTol_ = 1e-10;
-}
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::cellSizeFunction::cellSizeFunction
-(
- const word& type,
- const dictionary& cellSizeFunctionDict,
- const searchableSurface& surface
-)
-:
- dictionary(cellSizeFunctionDict),
- surface_(surface),
- surfaceCellSizeFunction_
- (
- surfaceCellSizeFunction::New
- (
- cellSizeFunctionDict,
- surface
- )
- ),
- coeffsDict_(subDict(type + "Coeffs")),
- sideMode_(),
- priority_(readLabel(cellSizeFunctionDict.lookup("priority")))
-{
- word mode = cellSizeFunctionDict.lookup("mode");
-
- if (surface_.hasVolumeType())
- {
- if (mode == "inside")
- {
- sideMode_ = smInside;
- }
- else if (mode == "outside")
- {
- sideMode_ = smOutside;
- }
- else if (mode == "bothSides")
- {
- sideMode_ = rmBothsides;
- }
- else
- {
- FatalErrorIn("searchableSurfaceControl::searchableSurfaceControl")
- << "Unknown mode, expected: inside, outside or bothSides" << nl
- << exit(FatalError);
- }
- }
- else
- {
- if (mode != "bothSides")
- {
- WarningIn("searchableSurfaceControl::searchableSurfaceControl")
- << "surface does not support volumeType, defaulting mode to "
- << "bothSides."
- << endl;
- }
-
- sideMode_ = rmBothsides;
- }
-}
-
-
-// * * * * * * * * * * * * * * * * * Selectors * * * * * * * * * * * * * * * //
-
-Foam::autoPtr<Foam::cellSizeFunction> Foam::cellSizeFunction::New
-(
- const dictionary& cellSizeFunctionDict,
- const searchableSurface& surface
-)
-{
- word cellSizeFunctionTypeName
- (
- cellSizeFunctionDict.lookup("cellSizeFunction")
- );
-
- Info<< " Selecting cellSizeFunction " << cellSizeFunctionTypeName
- << endl;
-
- dictionaryConstructorTable::iterator cstrIter =
- dictionaryConstructorTablePtr_->find(cellSizeFunctionTypeName);
-
- if (cstrIter == dictionaryConstructorTablePtr_->end())
- {
- FatalErrorIn
- (
- "cellSizeFunction::New(dictionary&, "
- "const conformalVoronoiMesh&, const searchableSurface&)"
- ) << "Unknown cellSizeFunction type "
- << cellSizeFunctionTypeName
- << endl << endl
- << "Valid cellSizeFunction types are :" << endl
- << dictionaryConstructorTablePtr_->toc()
- << exit(FatalError);
- }
-
- return autoPtr<cellSizeFunction>
- (
- cstrIter()(cellSizeFunctionDict, surface)
- );
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::cellSizeFunction::~cellSizeFunction()
-{}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/cellSizeFunction/cellSizeFunction.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/cellSizeFunction/cellSizeFunction.H
deleted file mode 100644
index 6c93f8e260238d88ae6b8e8344a9d657d4c35f56..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/cellSizeFunction/cellSizeFunction.H
+++ /dev/null
@@ -1,201 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::cellSizeFunction
-
-Description
- Abstract base class for specifying target cell sizes
-
-SourceFiles
- cellSizeFunction.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef cellSizeFunction_H
-#define cellSizeFunction_H
-
-#include "point.H"
-#include "conformalVoronoiMesh.H"
-#include "searchableSurface.H"
-#include "dictionary.H"
-#include "autoPtr.H"
-#include "runTimeSelectionTables.H"
-#include "surfaceCellSizeFunction.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class cellSizeFunction Declaration
-\*---------------------------------------------------------------------------*/
-
-class cellSizeFunction
-:
- public dictionary
-{
-
-public:
-
- //- Surface side mode
- enum sideMode
- {
- smInside, // Control inside the surface
- smOutside, // Control outside the surface
- rmBothsides // Control on both sides of a surface
- };
-
- //- Runtime type information
- TypeName("cellSizeFunction");
-
-
-protected:
-
- // Static data
-
- //- Point closeness tolerance to a surface where the function "snaps" to
- // including the surface
- static scalar snapToSurfaceTol_;
-
-
- // Protected data
-
- //- Reference to the searchableSurface that cellSizeFunction
- // relates to
- const searchableSurface& surface_;
-
- //- Cell size at the surface
- scalarField surfaceCellSize_;
-
- autoPtr<surfaceCellSizeFunction> surfaceCellSizeFunction_;
-
- //- Method details dictionary
- dictionary coeffsDict_;
-
- //- Mode of size specification, i.e. inside, outside or bothSides
- sideMode sideMode_;
-
- label priority_;
-
-
-private:
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- cellSizeFunction(const cellSizeFunction&);
-
- //- Disallow default bitwise assignment
- void operator=(const cellSizeFunction&);
-
-
-public:
-
- // Declare run-time constructor selection table
-
- declareRunTimeSelectionTable
- (
- autoPtr,
- cellSizeFunction,
- dictionary,
- (
- const dictionary& cellSizeFunctionDict,
- const searchableSurface& surface
- ),
- (cellSizeFunctionDict, surface)
- );
-
-
- // Constructors
-
- //- Construct from components
- cellSizeFunction
- (
- const word& type,
- const dictionary& cellSizeFunctionDict,
- const searchableSurface& surface
- );
-
-
- // Selectors
-
- //- Return a reference to the selected cellSizeFunction
- static autoPtr<cellSizeFunction> New
- (
- const dictionary& cellSizeFunctionDict,
- const searchableSurface& surface
- );
-
-
- //- Destructor
- virtual ~cellSizeFunction();
-
-
- // Member Functions
-
- //- Const access to the details dictionary
- inline const dictionary& coeffsDict() const
- {
- return coeffsDict_;
- }
-
- //- Modify scalar argument to the cell size specified by function.
- // Return a boolean specifying if the function was used, i.e. false if
- // the point was not in range of the surface for a spatially varying
- // size.
- virtual bool cellSize
- (
- const point& pt,
- scalar& size
- ) const = 0;
-
-
- virtual bool setCellSize
- (
- const pointField& pts
- )
- {
- WarningIn("cellSizeFunction::setCellSize(const pointField&)")
- << "Not overloaded."
- << endl;
- return false;
- }
-
- label priority() const
- {
- return priority_;
- }
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearDistance/linearDistance.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearDistance/linearDistance.C
deleted file mode 100644
index fc4c4223ef754f7c4fdec46b1256b9e2ac25b294..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearDistance/linearDistance.C
+++ /dev/null
@@ -1,200 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "linearDistance.H"
-#include "addToRunTimeSelectionTable.H"
-#include "triSurfaceMesh.H"
-#include "triSurfaceFields.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(linearDistance, 0);
-addToRunTimeSelectionTable(cellSizeFunction, linearDistance, dictionary);
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-linearDistance::linearDistance
-(
- const dictionary& initialPointsDict,
- const searchableSurface& surface
-)
-:
- cellSizeFunction(typeName, initialPointsDict, surface),
- distanceCellSize_(readScalar(coeffsDict().lookup("distanceCellSize"))),
- distance_(readScalar(coeffsDict().lookup("distance"))),
- distanceSqr_(sqr(distance_))
-{}
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-scalar linearDistance::sizeFunction
-(
- const point& pt,
- scalar d,
- label index
-) const
-{
- const scalar interpolatedSize
- = surfaceCellSizeFunction_().interpolate(pt, index);
-
- scalar gradient
- = (distanceCellSize_ - interpolatedSize)
- /distance_;
-
- scalar size = gradient*d + interpolatedSize;
-
- return size;
-}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-bool linearDistance::cellSize(const point& pt, scalar& size) const
-{
- size = 0;
-
- List<pointIndexHit> hits;
-
- surface_.findNearest
- (
- pointField(1, pt),
- scalarField(1, distanceSqr_),
- hits
- );
-
- const pointIndexHit& hitInfo = hits[0];
-
- if (hitInfo.hit())
- {
- const point& hitPt = hitInfo.hitPoint();
- const label hitIndex = hitInfo.index();
-
- const scalar dist = mag(pt - hitPt);
-
- if (sideMode_ == rmBothsides)
- {
- size = sizeFunction(hitPt, dist, hitIndex);
-
- return true;
- }
-
- // If the nearest point is essentially on the surface, do not do a
- // getVolumeType calculation, as it will be prone to error.
- if (dist < snapToSurfaceTol_)
- {
- size = sizeFunction(hitPt, 0, hitIndex);
-
- return true;
- }
-
- pointField ptF(1, pt);
- List<searchableSurface::volumeType> vTL;
-
- surface_.getVolumeType(ptF, vTL);
-
- bool functionApplied = false;
-
- if
- (
- sideMode_ == smInside
- && vTL[0] == searchableSurface::INSIDE
- )
- {
- size = sizeFunction(hitPt, dist, hitIndex);
-
- functionApplied = true;
- }
- else if
- (
- sideMode_ == smOutside
- && vTL[0] == searchableSurface::OUTSIDE
- )
- {
- size = sizeFunction(hitPt, dist, hitIndex);
-
- functionApplied = true;
- }
-
- return functionApplied;
- }
-
- return false;
-}
-
-
-bool linearDistance::setCellSize(const pointField& pts)
-{
- labelHashSet surfaceAlreadyHit(surfaceCellSize_.size());
-
- forAll(pts, ptI)
- {
- const Foam::point& pt = pts[ptI];
-
- List<pointIndexHit> hits;
-
- surface_.findNearest
- (
- pointField(1, pt),
- scalarField(1, distanceSqr_),
- hits
- );
-
- const label surfHitI = hits[0].index();
-
- if
- (
- hits[0].hit()
- && !surfaceAlreadyHit.found(surfHitI)
- )
- {
- // Halving cell size is arbitrary
- surfaceCellSizeFunction_().refineSurfaceSize(surfHitI);
-
- surfaceAlreadyHit.insert(surfHitI);
- }
- }
-
- // Force recalculation of the interpolation
- if (!pts.empty())
- {
- surfaceCellSizeFunction_().recalculateInterpolation();
- }
-
- return true;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearDistance/linearDistance.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearDistance/linearDistance.H
deleted file mode 100644
index d30a6a8045991d02255f782b954e4f7af9ae1386..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearDistance/linearDistance.H
+++ /dev/null
@@ -1,121 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::linearDistance
-
-Description
-
-SourceFiles
- linearDistance.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef linearDistance_H
-#define linearDistance_H
-
-#include "cellSizeFunction.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class linearDistance Declaration
-\*---------------------------------------------------------------------------*/
-
-class linearDistance
-:
- public cellSizeFunction
-{
-
-private:
-
- // Private data
-
- //- cell size at distance_ from the surface
- scalar distanceCellSize_;
-
- //- distance from the surface to control over
- scalar distance_;
-
- //- distance squared
- scalar distanceSqr_;
-
-
- // Private Member Functions
-
- //- Calculate the cell size as a function of the given distance
- scalar sizeFunction(const point& pt, scalar d, label index) const;
-
-
-public:
-
- //- Runtime type information
- TypeName("linearDistance");
-
- // Constructors
-
- //- Construct from components
- linearDistance
- (
- const dictionary& initialPointsDict,
- const searchableSurface& surface
- );
-
-
- //- Destructor
- virtual ~linearDistance()
- {}
-
-
- // Member Functions
-
- //- Modify scalar argument to the cell size specified by function.
- // Return a boolean specifying if the function was used, i.e. false if
- // the point was not in range of the surface for a spatially varying
- // size.
- virtual bool cellSize
- (
- const point& pt,
- scalar& size
- ) const;
-
- //- Adapt local cell size. Return true if anything changed.
- virtual bool setCellSize
- (
- const pointField& pts
- );
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearSpatial/linearSpatial.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearSpatial/linearSpatial.C
deleted file mode 100644
index 5f41979bc764d14260e803b74f646219630a9529..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearSpatial/linearSpatial.C
+++ /dev/null
@@ -1,142 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "linearSpatial.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(linearSpatial, 0);
-addToRunTimeSelectionTable(cellSizeFunction, linearSpatial, dictionary);
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-linearSpatial::linearSpatial
-(
- const dictionary& initialPointsDict,
- const searchableSurface& surface
-)
-:
- cellSizeFunction(typeName, initialPointsDict, surface),
- referencePoint_(coeffsDict().lookup("referencePoint")),
- referenceCellSize_(readScalar(coeffsDict().lookup("referenceCellSize"))),
- direction_(coeffsDict().lookup("direction")),
- cellSizeGradient_(readScalar(coeffsDict().lookup("cellSizeGradient")))
-{
- direction_ /= mag(direction_);
-}
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-scalar linearSpatial::sizeFunction(const point& pt) const
-{
- return
- referenceCellSize_
- + ((pt - referencePoint_) & direction_)*cellSizeGradient_;
-}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-bool linearSpatial::cellSize
-(
- const point& pt,
- scalar& size
-) const
-{
- if (sideMode_ == rmBothsides)
- {
- size = sizeFunction(pt);
-
- return true;
- }
-
- size = 0;
-
- List<pointIndexHit> hits;
-
- surface_.findNearest
- (
- pointField(1, pt),
- scalarField(1, sqr(snapToSurfaceTol_)),
- hits
- );
-
- const pointIndexHit& hitInfo = hits[0];
-
- // If the nearest point is essentially on the surface, do not do a
- // getVolumeType calculation, as it will be prone to error.
- if (hitInfo.hit())
- {
- size = sizeFunction(pt);
-
- return true;
- }
-
- pointField ptF(1, pt);
- List<searchableSurface::volumeType> vTL;
-
- surface_.getVolumeType(ptF, vTL);
-
- bool functionApplied = false;
-
- if
- (
- sideMode_ == smInside
- && vTL[0] == searchableSurface::INSIDE
- )
- {
- size = sizeFunction(pt);
-
- functionApplied = true;
- }
- else if
- (
- sideMode_ == smOutside
- && vTL[0] == searchableSurface::OUTSIDE
- )
- {
- size = sizeFunction(pt);
-
- functionApplied = true;
- }
-
- return functionApplied;
-
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearSpatial/linearSpatial.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearSpatial/linearSpatial.H
deleted file mode 100644
index 0f413b289a950c40ba3bb2b068c9bea97b92c272..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/linearSpatial/linearSpatial.H
+++ /dev/null
@@ -1,119 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::linearSpatial
-
-Description
-
-SourceFiles
- linearSpatial.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef linearSpatial_H
-#define linearSpatial_H
-
-#include "cellSizeFunction.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class linearSpatial Declaration
-\*---------------------------------------------------------------------------*/
-
-class linearSpatial
-:
- public cellSizeFunction
-{
-
-private:
-
- // Private data
-
- //- Reference point for spatial size grading
- point referencePoint_;
-
- //- Cell size at reference point
- scalar referenceCellSize_;
-
- //- Direction of cell size grading, stored as unit vector, may be
- // supplied with any magnitude
- vector direction_;
-
- //- Gradient of cell size change in direction of direction_
- scalar cellSizeGradient_;
-
-
- // Private Member Functions
-
- //- Calculate the cell size as a function of the given position
- scalar sizeFunction(const point& pt) const;
-
-
-public:
-
- //- Runtime type information
- TypeName("linearSpatial");
-
- // Constructors
-
- //- Construct from components
- linearSpatial
- (
- const dictionary& initialPointsDict,
- const searchableSurface& surface
- );
-
-
- //- Destructor
- virtual ~linearSpatial()
- {}
-
-
- // Member Functions
-
- //- Modify scalar argument to the cell size specified by function.
- // Return a boolean specifying if the function was used, i.e. false if
- // the point was not in range of the surface for a spatially varying
- // size.
- virtual bool cellSize
- (
- const point& pt,
- scalar& size
- ) const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/surfaceOffsetLinearDistance/surfaceOffsetLinearDistance.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/surfaceOffsetLinearDistance/surfaceOffsetLinearDistance.C
deleted file mode 100644
index 2a711f3e0b6f66958c9cfae41b8e9b0cd343d659..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/surfaceOffsetLinearDistance/surfaceOffsetLinearDistance.C
+++ /dev/null
@@ -1,224 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "surfaceOffsetLinearDistance.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(surfaceOffsetLinearDistance, 0);
-addToRunTimeSelectionTable
-(
- cellSizeFunction,
- surfaceOffsetLinearDistance,
- dictionary
-);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-surfaceOffsetLinearDistance::surfaceOffsetLinearDistance
-(
- const dictionary& initialPointsDict,
- const searchableSurface& surface
-)
-:
- cellSizeFunction(typeName, initialPointsDict, surface),
- distanceCellSize_(readScalar(coeffsDict().lookup("distanceCellSize"))),
- surfaceOffset_(readScalar(coeffsDict().lookup("surfaceOffset"))),
- totalDistance_(),
- totalDistanceSqr_()
-{
- if
- (
- coeffsDict().found("totalDistance")
- || coeffsDict().found("linearDistance")
- )
- {
- if
- (
- coeffsDict().found("totalDistance")
- && coeffsDict().found("linearDistance")
- )
- {
- FatalErrorIn
- (
- "surfaceOffsetLinearDistance::surfaceOffsetLinearDistance"
- "("
- "const dictionary& initialPointsDict, "
- "const conformalVoronoiMesh& cvMesh, "
- "const searchableSurface& surface"
- ")"
- )
- << "totalDistance and linearDistance found, "
- << "specify one or other, not both."
- << nl << exit(FatalError) << endl;
- }
-
- if (coeffsDict().found("totalDistance"))
- {
- totalDistance_ = readScalar(coeffsDict().lookup("totalDistance"));
- }
- else
- {
- totalDistance_ =
- readScalar(coeffsDict().lookup("linearDistance"))
- + surfaceOffset_;
- }
- }
- else
- {
- FatalErrorIn
- (
- "surfaceOffsetLinearDistance::surfaceOffsetLinearDistance"
- "("
- "const dictionary& initialPointsDict, "
- "const conformalVoronoiMesh& cvMesh, "
- "const searchableSurface& surface"
- ")"
- )
- << "totalDistance or linearDistance not found."
- << nl << exit(FatalError) << endl;
- }
-
- totalDistanceSqr_ = sqr(totalDistance_);
-}
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-scalar surfaceOffsetLinearDistance::sizeFunction
-(
- const point& pt,
- scalar d,
- label index
-) const
-{
- const scalar interpolatedSize
- = surfaceCellSizeFunction_().interpolate(pt, index);
-
- if (d <= surfaceOffset_)
- {
- return interpolatedSize;
- }
-
- scalar gradient =
- (distanceCellSize_ - interpolatedSize)
- /(totalDistance_ - surfaceOffset_);
-
- scalar intercept = interpolatedSize - gradient*surfaceOffset_;
-
- return gradient*d + intercept;
-}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-bool surfaceOffsetLinearDistance::cellSize
-(
- const point& pt,
- scalar& size
-) const
-{
- size = 0;
-
- List<pointIndexHit> hits;
-
- surface_.findNearest
- (
- pointField(1, pt),
- scalarField(1, totalDistanceSqr_),
- hits
- );
-
- const pointIndexHit& hitInfo = hits[0];
-
- if (hitInfo.hit())
- {
- const point& hitPt = hitInfo.hitPoint();
- const label hitIndex = hitInfo.index();
-
- const scalar dist = mag(pt - hitPt);
-
- if (sideMode_ == rmBothsides)
- {
- size = sizeFunction(hitPt, dist, hitIndex);
-
- return true;
- }
-
- // If the nearest point is essentially on the surface, do not do a
- // getVolumeType calculation, as it will be prone to error.
- if (mag(pt - hitInfo.hitPoint()) < snapToSurfaceTol_)
- {
- size = sizeFunction(hitPt, 0, hitIndex);
-
- return true;
- }
-
- pointField ptF(1, pt);
- List<searchableSurface::volumeType> vTL;
-
- surface_.getVolumeType(ptF, vTL);
-
- bool functionApplied = false;
-
- if
- (
- sideMode_ == smInside
- && vTL[0] == searchableSurface::INSIDE
- )
- {
- size = sizeFunction(hitPt, dist, hitIndex);
-
- functionApplied = true;
- }
- else if
- (
- sideMode_ == smOutside
- && vTL[0] == searchableSurface::OUTSIDE
- )
- {
- size = sizeFunction(hitPt, dist, hitIndex);
-
- functionApplied = true;
- }
-
- return functionApplied;
- }
-
- return false;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/surfaceOffsetLinearDistance/surfaceOffsetLinearDistance.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/surfaceOffsetLinearDistance/surfaceOffsetLinearDistance.H
deleted file mode 100644
index 520435237fbbf9d0fc700c6d9f22c2bdee0168d0..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/surfaceOffsetLinearDistance/surfaceOffsetLinearDistance.H
+++ /dev/null
@@ -1,119 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::surfaceOffsetLinearDistance
-
-Description
-
-SourceFiles
- surfaceOffsetLinearDistance.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef surfaceOffsetLinearDistance_H
-#define surfaceOffsetLinearDistance_H
-
-#include "cellSizeFunction.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class surfaceOffsetLinearDistance Declaration
-\*---------------------------------------------------------------------------*/
-
-class surfaceOffsetLinearDistance
-:
- public cellSizeFunction
-{
-
-private:
-
- // Private data
-
- //- cell size at distance_ from the surface
- scalar distanceCellSize_;
-
- //- Offset distance from surface for constant size portion
- scalar surfaceOffset_;
-
- //- Total distance from the surface to control over (distance +
- // surfaceOffset)
- scalar totalDistance_;
-
- //- totalDistance squared
- scalar totalDistanceSqr_;
-
-
- // Private Member Functions
-
- //- Calculate the cell size as a function of the given distance
- scalar sizeFunction(const point& pt, scalar d, label index) const;
-
-
-public:
-
- //- Runtime type information
- TypeName("surfaceOffsetLinearDistance");
-
- // Constructors
-
- //- Construct from components
- surfaceOffsetLinearDistance
- (
- const dictionary& initialPointsDict,
- const searchableSurface& surface
- );
-
-
- //- Destructor
- virtual ~surfaceOffsetLinearDistance()
- {}
-
-
- // Member Functions
-
- //- Modify scalar argument to the cell size specified by function.
- // Return a boolean specifying if the function was used, i.e. false if
- // the point was not in range of the surface for a spatially varying
- // size.
- virtual bool cellSize
- (
- const point& pt,
- scalar& size
- ) const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniform/uniform.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniform/uniform.C
deleted file mode 100644
index e2744eeb2fe544aad3e715bf774d619402a5ee0d..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniform/uniform.C
+++ /dev/null
@@ -1,175 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "uniform.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(uniform, 0);
-addToRunTimeSelectionTable(cellSizeFunction, uniform, dictionary);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-uniform::uniform
-(
- const dictionary& initialPointsDict,
- const searchableSurface& surface
-)
-:
- cellSizeFunction(typeName, initialPointsDict, surface)
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-bool uniform::cellSize
-(
- const point& pt,
- scalar& size
-) const
-{
- List<pointIndexHit> hits;
-
- surface_.findNearest
- (
- pointField(1, pt),
- scalarField(1, sqr(GREAT)),
- hits
- );
-
- const pointIndexHit& hitInfo = hits[0];
-
- if (hitInfo.hit())
- {
- const point& hitPt = hitInfo.hitPoint();
- const label index = hitInfo.index();
-
- if (sideMode_ == rmBothsides)
- {
- size = surfaceCellSizeFunction_().interpolate(hitPt, index);
-
- return true;
- }
-
- size = 0;
-
- List<pointIndexHit> closeToSurfaceHits;
-
- surface_.findNearest
- (
- pointField(1, pt),
- scalarField(1, sqr(snapToSurfaceTol_)),
- closeToSurfaceHits
- );
-
- const pointIndexHit& closeToSurface = closeToSurfaceHits[0];
-
- // If the nearest point is essentially on the surface, do not do a
- // getVolumeType calculation, as it will be prone to error.
- if (closeToSurface.hit())
- {
- size = surfaceCellSizeFunction_().interpolate(hitPt, index);
-
- return true;
- }
-
- pointField ptF(1, pt);
- List<searchableSurface::volumeType> vTL(1);
-
- surface_.getVolumeType(ptF, vTL);
-
- bool functionApplied = false;
-
- if
- (
- sideMode_ == smInside
- && vTL[0] == searchableSurface::INSIDE
- )
- {
- size = surfaceCellSizeFunction_().interpolate(hitPt, index);
-
- functionApplied = true;
- }
- else if
- (
- sideMode_ == smOutside
- && vTL[0] == searchableSurface::OUTSIDE
- )
- {
- size = surfaceCellSizeFunction_().interpolate(hitPt, index);
-
- functionApplied = true;
- }
-
- return functionApplied;
- }
-
- return false;
-}
-
-
-bool uniform::setCellSize
-(
- const pointField& pts
-)
-{
-// labelHashSet surfaceAlreadyHit(cellSize_.size());
-//
-// forAll(pts, ptI)
-// {
-// const Foam::point& pt = pts[ptI];
-//
-// List<pointIndexHit> hits;
-//
-// surface_.findNearest
-// (
-// pointField(1, pt),
-// scalarField(1, sqr(GREAT)),
-// hits
-// );
-//
-// if (hits[0].hit() && !surfaceAlreadyHit.found(hits[0].index()))
-// {
-// surfaceCellSizeFunction_().refineCellSize(hits[0].index());
-//
-// surfaceAlreadyHit.insert(hits[0].index());
-// }
-// }
-
- return true;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniform/uniform.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniform/uniform.H
deleted file mode 100644
index 726d506992e3dfe3436da05c2bf730d7b73a19b5..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniform/uniform.H
+++ /dev/null
@@ -1,106 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::uniform
-
-Description
-
-SourceFiles
- uniform.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef uniform_H
-#define uniform_H
-
-#include "cellSizeFunction.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class uniform Declaration
-\*---------------------------------------------------------------------------*/
-
-class uniform
-:
- public cellSizeFunction
-{
-
-private:
-
- // Private data
-
-
-public:
-
- //- Runtime type information
- TypeName("uniform");
-
- // Constructors
-
- //- Construct from components
- uniform
- (
- const dictionary& initialPointsDict,
- const searchableSurface& surface
- );
-
-
- //- Destructor
- virtual ~uniform()
- {}
-
-
- // Member Functions
-
- //- Modify scalar argument to the cell size specified by function.
- // Return a boolean specifying if the function was used, i.e. false if
- // the point was not in range of the surface for a spatially varying
- // size.
- virtual bool cellSize
- (
- const point& pt,
- scalar& size
- ) const;
-
- //- Adapt local cell size. Return true if anything changed.
- virtual bool setCellSize
- (
- const pointField& pts
- );
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniformDistance/uniformDistance.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniformDistance/uniformDistance.C
deleted file mode 100644
index 47e8ecfe43db2a6fbf62c68431066c11e6538e03..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniformDistance/uniformDistance.C
+++ /dev/null
@@ -1,164 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "uniformDistance.H"
-#include "addToRunTimeSelectionTable.H"
-#include "dimensionSet.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(uniformDistance, 0);
-addToRunTimeSelectionTable(cellSizeFunction, uniformDistance, dictionary);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-uniformDistance::uniformDistance
-(
- const dictionary& initialPointsDict,
- const searchableSurface& surface
-)
-:
- cellSizeFunction(typeName, initialPointsDict, surface),
- distance_(readScalar(coeffsDict().lookup("distance"))),
- distanceSqr_(sqr(distance_))
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-bool uniformDistance::cellSize
-(
- const point& pt,
- scalar& size
-) const
-{
- size = 0;
-
- List<pointIndexHit> hits;
-
- surface_.findNearest
- (
- pointField(1, pt),
- scalarField(1, distanceSqr_),
- hits
- );
-
- const pointIndexHit& hitInfo = hits[0];
-
- if (hitInfo.hit())
- {
- if (sideMode_ == rmBothsides)
- {
- size = surfaceCellSizeFunction_().surfaceSize(hitInfo.index());
-
- return true;
- }
-
- // If the nearest point is essentially on the surface, do not do a
- // getVolumeType calculation, as it will be prone to error.
- if (mag(pt - hitInfo.hitPoint()) < snapToSurfaceTol_)
- {
- size = surfaceCellSizeFunction_().surfaceSize(hitInfo.index());
-
- return true;
- }
-
- pointField ptF(1, pt);
- List<searchableSurface::volumeType> vTL;
-
- surface_.getVolumeType(ptF, vTL);
-
- bool functionApplied = false;
-
- if
- (
- sideMode_ == smInside
- && vTL[0] == searchableSurface::INSIDE
- )
- {
- size = surfaceCellSizeFunction_().surfaceSize(hitInfo.index());
-
- functionApplied = true;
- }
- else if
- (
- sideMode_ == smOutside
- && vTL[0] == searchableSurface::OUTSIDE
- )
- {
- size = surfaceCellSizeFunction_().surfaceSize(hitInfo.index());
-
- functionApplied = true;
- }
-
- return functionApplied;
- }
-
- return false;
-}
-
-
-bool uniformDistance::setCellSize
-(
- const pointField& pts
-)
-{
- labelHashSet surfaceAlreadyHit(surface_.size());
-
- forAll(pts, ptI)
- {
- const Foam::point& pt = pts[ptI];
-
- List<pointIndexHit> hits;
-
- surface_.findNearest
- (
- pointField(1, pt),
- scalarField(1, distanceSqr_),
- hits
- );
-
- if (hits[0].hit() && !surfaceAlreadyHit.found(hits[0].index()))
- {
- surfaceCellSizeFunction_().refineSurfaceSize(hits[0].index());
-
- surfaceAlreadyHit.insert(hits[0].index());
- }
- }
-
- return true;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniformDistance/uniformDistance.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniformDistance/uniformDistance.H
deleted file mode 100644
index 0ffe679e1b310b55b03b39b3132482a2191b0442..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/cellSizeFunction/uniformDistance/uniformDistance.H
+++ /dev/null
@@ -1,112 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::uniformDistance
-
-Description
-
-SourceFiles
- uniformDistance.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef uniformDistance_H
-#define uniformDistance_H
-
-#include "cellSizeFunction.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class uniformDistance Declaration
-\*---------------------------------------------------------------------------*/
-
-class uniformDistance
-:
- public cellSizeFunction
-{
-
-private:
-
- // Private data
-
- //- Distance
- scalar distance_;
-
- //- Distance squared
- scalar distanceSqr_;
-
-
-public:
-
- //- Runtime type information
- TypeName("uniformDistance");
-
- // Constructors
-
- //- Construct from components
- uniformDistance
- (
- const dictionary& initialPointsDict,
- const searchableSurface& surface
- );
-
-
- //- Destructor
- virtual ~uniformDistance()
- {}
-
-
- // Member Functions
-
- //- Modify scalar argument to the cell size specified by function.
- // Return a boolean specifying if the function was used, i.e. false if
- // the point was not in range of the surface for a spatially varying
- // size.
- virtual bool cellSize
- (
- const point& pt,
- scalar& size
- ) const;
-
- //- Adapt local cell size. Return true if anything changed.
- virtual bool setCellSize
- (
- const pointField& pts
- );
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/automatic/automatic.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/automatic/automatic.C
deleted file mode 100644
index 4a73b4a7c51cc78e1607d3ffd42a2058f2710729..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/automatic/automatic.C
+++ /dev/null
@@ -1,292 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "automatic.H"
-#include "addToRunTimeSelectionTable.H"
-#include "triSurfaceMesh.H"
-#include "vtkSurfaceWriter.H"
-#include "Time.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
- defineTypeNameAndDebug(automatic, 0);
- addToRunTimeSelectionTable(cellSizeCalculationType, automatic, dictionary);
-}
-
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-void Foam::automatic::smoothField(triSurfaceScalarField& surf)
-{
- label nSmoothingIterations = 10;
-
- for (label iter = 0; iter < nSmoothingIterations; ++iter)
- {
- const pointField& faceCentres = surface_.faceCentres();
-
- forAll(surf, sI)
- {
- const labelList& faceFaces = surface_.faceFaces()[sI];
-
- const point& fC = faceCentres[sI];
- const scalar value = surf[sI];
-
- scalar newValue = 0;
- scalar totalDist = 0;
-
- label nFaces = 0;
-
- forAll(faceFaces, fI)
- {
- const label faceLabel = faceFaces[fI];
- const point& faceCentre = faceCentres[faceLabel];
-
- const scalar faceValue = surf[faceLabel];
- const scalar distance = mag(faceCentre - fC);
-
- newValue += faceValue/distance;
-
- totalDist += 1.0/distance;
-
- if (value < faceValue)
- {
- nFaces++;
- }
- }
-
- // Do not smooth out the peak values
- if (nFaces == faceFaces.size())
- {
- //continue;
- }
-
- surf[sI] = newValue/totalDist;
- }
- }
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::automatic::automatic
-(
- const dictionary& cellSizeCalcTypeDict,
- const triSurfaceMesh& surface
-)
-:
- cellSizeCalculationType(typeName, cellSizeCalcTypeDict, surface),
- coeffsDict_(cellSizeCalcTypeDict.subDict(typeName + "Coeffs")),
- surface_(surface),
- surfaceName_(surface.searchableSurface::name()),
- readCurvature_(Switch(coeffsDict_.lookup("curvature"))),
- curvatureFile_(coeffsDict_.lookup("curvatureFile")),
- readFeatureProximity_(Switch(coeffsDict_.lookup("featureProximity"))),
- featureProximityFile_(coeffsDict_.lookup("featureProximityFile")),
- readInternalCloseness_(Switch(coeffsDict_.lookup("internalCloseness"))),
- internalClosenessFile_(coeffsDict_.lookup("internalClosenessFile")),
- curvatureCellSizeFactor_
- (
- readScalar(coeffsDict_.lookup("curvatureCellSizeFactor"))
- ),
- maximumCellSize_
- (
- readScalar(coeffsDict_.lookup("maximumCellSize"))
- )
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-Foam::triSurfaceScalarField Foam::automatic::load()
-{
- Info<< indent << "Calculating cell size on surface: "
- << surfaceName_ << endl;
-
- triSurfaceScalarField surfaceCellSize
- (
- IOobject
- (
- surfaceName_ + ".cellSize",
- surface_.searchableSurface::time().constant(),
- "triSurface",
- surface_.searchableSurface::time(),
- IOobject::NO_READ,
- IOobject::NO_WRITE
- ),
- surface_,
- dimLength,
- scalarField(surface_.size(), maximumCellSize_)
- );
-
- if (readCurvature_)
- {
- Info<< indent << "Reading curvature : "
- << curvatureFile_ << endl;
-
- triSurfacePointScalarField curvature
- (
- IOobject
- (
- curvatureFile_,
- surface_.searchableSurface::time().constant(),
- "triSurface",
- surface_.searchableSurface::time(),
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- surface_,
- dimLength,
- true
- );
-
- const List<labelledTri>& localFaces = surface_.localFaces();
- const labelList& meshPoints = surface_.meshPoints();
-
- forAll(surfaceCellSize, fI)
- {
- const labelList& facePoints = localFaces[fI].triFaceFace();
-
- scalar interpolatedCurvatureToFace = 0.0;
-
- forAll(facePoints, fpI)
- {
- interpolatedCurvatureToFace
- += curvature[meshPoints[facePoints[fpI]]];
- }
-
- interpolatedCurvatureToFace /= facePoints.size();
-
- surfaceCellSize[fI] =
- min
- (
- 1.0
- /max
- (
- (1.0/curvatureCellSizeFactor_)
- *interpolatedCurvatureToFace,
- 1.0/maximumCellSize_
- ),
- surfaceCellSize[fI]
- );
- }
- }
-
- if (readInternalCloseness_)
- {
- Info<< indent << "Reading internal closeness: "
- << internalClosenessFile_ << endl;
-
- triSurfaceScalarField internalCloseness
- (
- IOobject
- (
- internalClosenessFile_,
- surface_.searchableSurface::time().constant(),
- "triSurface",
- surface_.searchableSurface::time(),
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- surface_,
- dimLength,
- true
- );
-
- forAll(surfaceCellSize, fI)
- {
- surfaceCellSize[fI] =
- min
- (
- internalCloseness[fI],
- surfaceCellSize[fI]
- );
- }
- }
-
- if (readFeatureProximity_)
- {
- Info<< indent << "Reading feature proximity : "
- << featureProximityFile_ << endl;
-
- triSurfaceScalarField featureProximity
- (
- IOobject
- (
- featureProximityFile_,
- surface_.searchableSurface::time().constant(),
- "triSurface",
- surface_.searchableSurface::time(),
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- surface_,
- dimLength,
- true
- );
-
- forAll(surfaceCellSize, fI)
- {
- surfaceCellSize[fI] =
- min
- (
- featureProximity[fI],
- surfaceCellSize[fI]
- );
- }
- }
-
- smoothField(surfaceCellSize);
-
- surfaceCellSize.write();
-
- if (debug)
- {
- faceList faces(surface_.size());
-
- forAll(surface_, fI)
- {
- faces[fI] = surface_.triSurface::operator[](fI).triFaceFace();
- }
-
- vtkSurfaceWriter().write
- (
- surface_.searchableSurface::time().constant()/"triSurface",
- surfaceName_,
- surface_.points(),
- faces,
- "cellSize",
- surfaceCellSize,
- false,
- true
- );
- }
-
- return surfaceCellSize;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/automatic/automatic.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/automatic/automatic.H
deleted file mode 100644
index 4288176e8f3ddccd42dcf074cb5bd2f21d260756..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/automatic/automatic.H
+++ /dev/null
@@ -1,129 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::automatic
-
-Description
-
-SourceFiles
- automatic.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef automatic_H
-#define automatic_H
-
-#include "cellSizeCalculationType.H"
-#include "triSurfaceFields.H"
-#include "PrimitivePatchInterpolation.H"
-#include "Switch.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-class triSurfaceMesh;
-
-/*---------------------------------------------------------------------------*\
- Class automatic Declaration
-\*---------------------------------------------------------------------------*/
-
-class automatic
-:
- public cellSizeCalculationType
-{
-
-private:
-
- // Private data
-
- //- Dictionary of coefficients for automatic cell sizing
- const dictionary& coeffsDict_;
-
- //- Reference to the triSurfaceMesh
- const triSurfaceMesh& surface_;
-
- //- Name of the surface. Used to write the cell size field
- const word surfaceName_;
-
- const Switch readCurvature_;
- const word curvatureFile_;
-
- const Switch readFeatureProximity_;
- const word featureProximityFile_;
-
- const Switch readInternalCloseness_;
- const word internalClosenessFile_;
-
- //- The curvature values are multiplied by the inverse of this value to
- // get the cell size
- const scalar curvatureCellSizeFactor_;
-
- //- The maximum allowable sell size
- const scalar maximumCellSize_;
-
-
- // Private Member Functions
-
- void smoothField(triSurfaceScalarField& surf);
-
-
-public:
-
- //- Runtime type information
- TypeName("automatic");
-
-
- // Constructors
-
- //- Construct from components
- automatic
- (
- const dictionary& cellSizeCalcTypeDict,
- const triSurfaceMesh& surface
- );
-
-
- //- Destructor
- virtual ~automatic()
- {}
-
-
- // Member Functions
-
- //- Load the cell size field
- virtual triSurfaceScalarField load();
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/cellSizeCalculationType/cellSizeCalculationType.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/cellSizeCalculationType/cellSizeCalculationType.C
deleted file mode 100644
index b449d46fc66b71d794d69ffa5aeae526f47ea9d8..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/cellSizeCalculationType/cellSizeCalculationType.C
+++ /dev/null
@@ -1,97 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "cellSizeCalculationType.H"
-#include "addToRunTimeSelectionTable.H"
-#include "triSurfaceMesh.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
- defineTypeNameAndDebug(cellSizeCalculationType, 0);
- defineRunTimeSelectionTable(cellSizeCalculationType, dictionary);
-}
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::cellSizeCalculationType::cellSizeCalculationType
-(
- const word& type,
- const dictionary& cellSizeCalculationTypeDict,
- const triSurfaceMesh& surface
-)
-:
- cellSizeCalculationTypeDict_(cellSizeCalculationTypeDict)
-{}
-
-
-// * * * * * * * * * * * * * * * * * Selectors * * * * * * * * * * * * * * * //
-
-Foam::autoPtr<Foam::cellSizeCalculationType> Foam::cellSizeCalculationType::New
-(
- const dictionary& cellSizeCalculationTypeDict,
- const triSurfaceMesh& surface
-)
-{
- word cellSizeCalculationTypeTypeName
- (
- cellSizeCalculationTypeDict.lookup("cellSizeCalculationType")
- );
-
- Info<< " Selecting cellSizeCalculationType "
- << cellSizeCalculationTypeTypeName << endl;
-
- dictionaryConstructorTable::iterator cstrIter =
- dictionaryConstructorTablePtr_->find(cellSizeCalculationTypeTypeName);
-
- if (cstrIter == dictionaryConstructorTablePtr_->end())
- {
- FatalErrorIn
- (
- "cellSizeCalculationType::New(dictionary&, "
- "const conformalVoronoiMesh&, const searchableSurface&)"
- ) << "Unknown cellSizeCalculationType type "
- << cellSizeCalculationTypeTypeName
- << endl << endl
- << "Valid cellSizeCalculationType types are :" << endl
- << dictionaryConstructorTablePtr_->toc()
- << exit(FatalError);
- }
-
- return autoPtr<cellSizeCalculationType>
- (
- cstrIter()(cellSizeCalculationTypeDict, surface)
- );
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::cellSizeCalculationType::~cellSizeCalculationType()
-{}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/cellSizeCalculationType/cellSizeCalculationType.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/cellSizeCalculationType/cellSizeCalculationType.H
deleted file mode 100644
index 4d59f5c7189906a57d1a3d0fd429b86645647917..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/cellSizeCalculationType/cellSizeCalculationType.H
+++ /dev/null
@@ -1,134 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::cellSizeCalculationType
-
-Description
- Abstract base class for specifying target cell sizes
-
-SourceFiles
- cellSizeCalculationType.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef cellSizeCalculationType_H
-#define cellSizeCalculationType_H
-
-#include "searchableSurface.H"
-#include "autoPtr.H"
-#include "runTimeSelectionTables.H"
-#include "triSurfaceFields.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-class triSurfaceMesh;
-
-/*---------------------------------------------------------------------------*\
- Class cellSizeCalculationType Declaration
-\*---------------------------------------------------------------------------*/
-
-class cellSizeCalculationType
-{
-
-protected:
-
- const dictionary& cellSizeCalculationTypeDict_;
-
-
-private:
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- cellSizeCalculationType(const cellSizeCalculationType&);
-
- //- Disallow default bitwise assignment
- void operator=(const cellSizeCalculationType&);
-
-
-public:
-
- //- Runtime type information
- TypeName("cellSizeCalculationType");
-
-
- // Declare run-time constructor selection table
-
- declareRunTimeSelectionTable
- (
- autoPtr,
- cellSizeCalculationType,
- dictionary,
- (
- const dictionary& cellSizeCalculationTypeDict,
- const triSurfaceMesh& surface
- ),
- (cellSizeCalculationTypeDict, surface)
- );
-
-
- // Constructors
-
- //- Construct from components
- cellSizeCalculationType
- (
- const word& type,
- const dictionary& cellSizeCalculationTypeDict,
- const triSurfaceMesh& surface
- );
-
-
- // Selectors
-
- //- Return a reference to the selected cellSizeCalculationType
- static autoPtr<cellSizeCalculationType> New
- (
- const dictionary& cellSizeCalculationTypeDict,
- const triSurfaceMesh& surface
- );
-
-
- //- Destructor
- virtual ~cellSizeCalculationType();
-
-
- // Member Functions
-
- //- Load the cell size
- virtual triSurfaceScalarField load() = 0;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/fieldFromFile/fieldFromFile.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/fieldFromFile/fieldFromFile.C
deleted file mode 100644
index 788c1d69c6852f1c51e71143c59f5cb1b07f7303..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/fieldFromFile/fieldFromFile.C
+++ /dev/null
@@ -1,88 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "fieldFromFile.H"
-#include "addToRunTimeSelectionTable.H"
-#include "triSurfaceMesh.H"
-#include "triSurfaceFields.H"
-#include "Time.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
- defineTypeNameAndDebug(fieldFromFile, 0);
- addToRunTimeSelectionTable
- (
- cellSizeCalculationType,
- fieldFromFile,
- dictionary
- );
-}
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::fieldFromFile::fieldFromFile
-(
- const dictionary& cellSizeCalcTypeDict,
- const triSurfaceMesh& surface
-)
-:
- cellSizeCalculationType(typeName, cellSizeCalcTypeDict, surface),
- surface_(surface),
- fileName_
- (
- cellSizeCalcTypeDict.subDict(typeName + "Coeffs").lookup("fieldFile")
- )
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-Foam::triSurfaceScalarField Foam::fieldFromFile::load()
-{
- Info<< indent << "Loading: " << fileName_ << endl;
-
- triSurfaceScalarField surfaceCellSize
- (
- IOobject
- (
- fileName_,
- surface_.searchableSurface::time().constant(),
- "triSurface",
- surface_.searchableSurface::time(),
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- surface_,
- dimLength,
- true
- );
-
- return surfaceCellSize;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/fieldFromFile/fieldFromFile.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/fieldFromFile/fieldFromFile.H
deleted file mode 100644
index ed99b5edd0f583d4aaa872b582ad1c1fc7ce5967..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/cellSizeCalculationType/fieldFromFile/fieldFromFile.H
+++ /dev/null
@@ -1,105 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::fieldFromFile
-
-Description
-
-SourceFiles
- fieldFromFile.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef fieldFromFile_H
-#define fieldFromFile_H
-
-#include "cellSizeCalculationType.H"
-#include "triSurfaceFields.H"
-#include "PrimitivePatchInterpolation.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-class triSurfaceMesh;
-
-/*---------------------------------------------------------------------------*\
- Class fieldFromFile Declaration
-\*---------------------------------------------------------------------------*/
-
-class fieldFromFile
-:
- public cellSizeCalculationType
-{
-
-private:
-
- // Private data
-
- //- Reference to the triSurfaceMesh
- const triSurfaceMesh& surface_;
-
- //- Name of the triSurfaceScalarField file to load in. Must be in
- // constant/triSurface
- const word fileName_;
-
-
-public:
-
- //- Runtime type information
- TypeName("fieldFromFile");
-
-
- // Constructors
-
- //- Construct from components
- fieldFromFile
- (
- const dictionary& cellSizeCalcTypeDict,
- const triSurfaceMesh& surface
- );
-
-
- //- Destructor
- virtual ~fieldFromFile()
- {}
-
-
- // Member Functions
-
- //- Load the cell size field
- virtual triSurfaceScalarField load();
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/nonUniformField/nonUniformField.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/nonUniformField/nonUniformField.C
deleted file mode 100644
index fc91ed279b04a7979eface6cf063fec1ab5b36c4..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/nonUniformField/nonUniformField.C
+++ /dev/null
@@ -1,167 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "nonUniformField.H"
-#include "triSurfaceMesh.H"
-#include "searchableSurface.H"
-#include "addToRunTimeSelectionTable.H"
-#include "Time.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
- defineTypeNameAndDebug(nonUniformField, 0);
- addToRunTimeSelectionTable
- (
- surfaceCellSizeFunction,
- nonUniformField,
- dictionary
- );
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::nonUniformField::nonUniformField
-(
- const dictionary& cellSizeFunctionDict,
- const searchableSurface& surface
-)
-:
- surfaceCellSizeFunction(typeName, cellSizeFunctionDict, surface),
- surfaceTriMesh_(refCast<const triSurfaceMesh>(surface)),
- surfaceCellSize_
- (
- IOobject
- (
- "surfaceCellSize.cellSize",
- surface.time().constant(),
- "triSurface",
- surface.time(),
- IOobject::NO_READ,
- IOobject::NO_WRITE
- ),
- surfaceTriMesh_,
- dimLength,
- false
- ),
- cellSizeCalculationType_
- (
- cellSizeCalculationType::New(coeffsDict(), surfaceTriMesh_)
- ),
- pointCellSize_(),
- patch_()
-{
- Info<< incrIndent << incrIndent;
-
- surfaceCellSize_ = cellSizeCalculationType_().load();
-
- Info<< decrIndent;
-
- Info<< indent << "Cell size field statistics:" << nl
- << indent << " Minimum: " << min(surfaceCellSize_).value() << nl
- << indent << " Average: " << average(surfaceCellSize_).value() << nl
- << indent << " Maximum: " << max(surfaceCellSize_).value() << endl;
-
- Info<< decrIndent;
-}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-const Foam::scalar& Foam::nonUniformField::surfaceSize(const label index) const
-{
- return surfaceCellSize_[index];
-}
-
-
-const Foam::scalar& Foam::nonUniformField::refineSurfaceSize(const label index)
-{
- surfaceCellSize_[index] *= refinementFactor_;
-
- return surfaceCellSize_[index];
-}
-
-
-Foam::scalar Foam::nonUniformField::interpolate
-(
- const point& pt,
- const label index
-) const
-{
- if (patch_.empty())
- {
- recalculateInterpolation();
- }
-
- const face& faceHitByPt = surfaceTriMesh_.triSurface::operator[](index);
-
- const pointField& pts = surfaceTriMesh_.points();
- const Map<label>& pMap = surfaceTriMesh_.meshPointMap();
-
- triPointRef tri
- (
- pts[faceHitByPt[0]],
- pts[faceHitByPt[1]],
- pts[faceHitByPt[2]]
- );
-
- scalarList bary(3, 0.0);
-
- tri.barycentric(pt, bary);
-
- return pointCellSize_()[pMap[faceHitByPt[0]]]*bary[0]
- + pointCellSize_()[pMap[faceHitByPt[1]]]*bary[1]
- + pointCellSize_()[pMap[faceHitByPt[2]]]*bary[2];
-}
-
-
-void Foam::nonUniformField::recalculateInterpolation() const
-{
- patch_.reset(new primitivePatchInterpolation(surfaceTriMesh_));
-
- pointCellSize_.reset
- (
- new triSurfacePointScalarField
- (
- IOobject
- (
- "pointCellSize.cellSize",
- surfaceTriMesh_.searchableSurface::time().constant(),
- "triSurface",
- surfaceTriMesh_.searchableSurface::time(),
- IOobject::NO_READ,
- IOobject::NO_WRITE
- ),
- surfaceTriMesh_,
- dimLength,
- patch_().faceToPointInterpolate(surfaceCellSize_)
- )
- );
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/nonUniformField/nonUniformField.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/nonUniformField/nonUniformField.H
deleted file mode 100644
index 039fd0fedbd8130d5ccbf6d1526419eebc3fed73..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/nonUniformField/nonUniformField.H
+++ /dev/null
@@ -1,123 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::nonUniformField
-
-Description
-
-SourceFiles
- nonUniformField.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef nonUniformField_H
-#define nonUniformField_H
-
-#include "triSurfaceFields.H"
-#include "PrimitivePatchInterpolation.H"
-#include "surfaceCellSizeFunction.H"
-#include "cellSizeCalculationType.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-class triSurfaceMesh;
-class searchableSurface;
-
-/*---------------------------------------------------------------------------*\
- Class nonUniformField Declaration
-\*---------------------------------------------------------------------------*/
-
-class nonUniformField
-:
- public surfaceCellSizeFunction
-{
-
-protected:
-
- // Private typedef
-
- typedef PrimitivePatchInterpolation
- <
- PrimitivePatch<labelledTri, List, pointField, point>
- > primitivePatchInterpolation;
-
-
- // Private data
-
- const triSurfaceMesh& surfaceTriMesh_;
-
- triSurfaceScalarField surfaceCellSize_;
-
- autoPtr<cellSizeCalculationType> cellSizeCalculationType_;
-
- mutable autoPtr<triSurfacePointScalarField> pointCellSize_;
-
- mutable autoPtr<primitivePatchInterpolation> patch_;
-
-
-public:
-
- //- Runtime type information
- TypeName("nonUniformField");
-
-
- // Constructors
-
- //- Construct from components
- nonUniformField
- (
- const dictionary& cellSizeFunctionDict,
- const searchableSurface& surface
- );
-
-
- //- Destructor
- virtual ~nonUniformField()
- {}
-
-
- // Member Functions
-
- virtual const scalar& surfaceSize(const label index) const;
-
- virtual const scalar& refineSurfaceSize(const label index);
-
- virtual scalar interpolate(const point& pt, const label index) const;
-
- virtual void recalculateInterpolation() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/surfaceCellSizeFunction/surfaceCellSizeFunction.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/surfaceCellSizeFunction/surfaceCellSizeFunction.C
deleted file mode 100644
index 04d9af824f0980840a2e1846f9144efb404b891f..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/surfaceCellSizeFunction/surfaceCellSizeFunction.C
+++ /dev/null
@@ -1,102 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "surfaceCellSizeFunction.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
- defineTypeNameAndDebug(surfaceCellSizeFunction, 0);
- defineRunTimeSelectionTable(surfaceCellSizeFunction, dictionary);
-}
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::surfaceCellSizeFunction::surfaceCellSizeFunction
-(
- const word& type,
- const dictionary& surfaceCellSizeFunctionDict,
- const searchableSurface& surface
-)
-:
- dictionary(surfaceCellSizeFunctionDict),
- surface_(surface),
- coeffsDict_(subDict(type + "Coeffs")),
- refinementFactor_
- (
- lookupOrDefault<scalar>("refinementFactor", 1.0)
- )
-{}
-
-
-// * * * * * * * * * * * * * * * * * Selectors * * * * * * * * * * * * * * * //
-
-Foam::autoPtr<Foam::surfaceCellSizeFunction> Foam::surfaceCellSizeFunction::New
-(
- const dictionary& surfaceCellSizeFunctionDict,
- const searchableSurface& surface
-)
-{
- word surfaceCellSizeFunctionTypeName
- (
- surfaceCellSizeFunctionDict.lookup("surfaceCellSizeFunction")
- );
-
- Info<< " Selecting surfaceCellSizeFunction "
- << surfaceCellSizeFunctionTypeName << endl;
-
- dictionaryConstructorTable::iterator cstrIter =
- dictionaryConstructorTablePtr_->find(surfaceCellSizeFunctionTypeName);
-
- if (cstrIter == dictionaryConstructorTablePtr_->end())
- {
- FatalErrorIn
- (
- "surfaceCellSizeFunction::New(dictionary&, "
- "const conformalVoronoiMesh&, const searchableSurface&)"
- ) << "Unknown surfaceCellSizeFunction type "
- << surfaceCellSizeFunctionTypeName
- << endl << endl
- << "Valid surfaceCellSizeFunction types are :" << endl
- << dictionaryConstructorTablePtr_->toc()
- << exit(FatalError);
- }
-
- return autoPtr<surfaceCellSizeFunction>
- (
- cstrIter()(surfaceCellSizeFunctionDict, surface)
- );
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::surfaceCellSizeFunction::~surfaceCellSizeFunction()
-{}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/surfaceCellSizeFunction/surfaceCellSizeFunction.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/surfaceCellSizeFunction/surfaceCellSizeFunction.H
deleted file mode 100644
index 5c798c3be1176c6d2044d85b4299975eed0f0ecb..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/surfaceCellSizeFunction/surfaceCellSizeFunction.H
+++ /dev/null
@@ -1,159 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::surfaceCellSizeFunction
-
-Description
- Abstract base class for specifying target cell sizes
-
-SourceFiles
- surfaceCellSizeFunction.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef surfaceCellSizeFunction_H
-#define surfaceCellSizeFunction_H
-
-#include "searchableSurface.H"
-#include "dictionary.H"
-#include "autoPtr.H"
-#include "runTimeSelectionTables.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class surfaceCellSizeFunction Declaration
-\*---------------------------------------------------------------------------*/
-
-class surfaceCellSizeFunction
-:
- public dictionary
-{
-
-protected:
-
- // Protected data
-
- //- Reference to the searchableSurface that surfaceCellSizeFunction
- // relates to
- const searchableSurface& surface_;
-
- const dictionary coeffsDict_;
-
- //- If cell resizing is allowed, this is the factor of the old cell size
- // to get the new cell size
- scalar refinementFactor_;
-
-
-private:
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- surfaceCellSizeFunction(const surfaceCellSizeFunction&);
-
- //- Disallow default bitwise assignment
- void operator=(const surfaceCellSizeFunction&);
-
-
-public:
-
- //- Runtime type information
- TypeName("surfaceCellSizeFunction");
-
-
- // Declare run-time constructor selection table
-
- declareRunTimeSelectionTable
- (
- autoPtr,
- surfaceCellSizeFunction,
- dictionary,
- (
- const dictionary& surfaceCellSizeFunctionDict,
- const searchableSurface& surface
- ),
- (surfaceCellSizeFunctionDict, surface)
- );
-
-
- // Constructors
-
- //- Construct from components
- surfaceCellSizeFunction
- (
- const word& type,
- const dictionary& surfaceCellSizeFunctionDict,
- const searchableSurface& surface
- );
-
-
- // Selectors
-
- //- Return a reference to the selected surfaceCellSizeFunction
- static autoPtr<surfaceCellSizeFunction> New
- (
- const dictionary& surfaceCellSizeFunctionDict,
- const searchableSurface& surface
- );
-
-
- //- Destructor
- virtual ~surfaceCellSizeFunction();
-
-
- // Member Functions
-
- //- Const access to the details dictionary
- inline const dictionary& coeffsDict() const
- {
- return coeffsDict_;
- }
-
- virtual const scalar& surfaceSize(const label index) const = 0;
-
- virtual const scalar& refineSurfaceSize(const label index) = 0;
-
- virtual scalar interpolate
- (
- const point& pt,
- const label index
- ) const = 0;
-
- virtual void recalculateInterpolation() const = 0;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/uniformValue/uniformValue.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/uniformValue/uniformValue.C
deleted file mode 100644
index e68a5ab3cac8a03f5d4b64663437d6c0875d035a..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/uniformValue/uniformValue.C
+++ /dev/null
@@ -1,86 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "uniformValue.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
- defineTypeNameAndDebug(uniformValue, 0);
- addToRunTimeSelectionTable
- (
- surfaceCellSizeFunction,
- uniformValue,
- dictionary
- );
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::uniformValue::uniformValue
-(
- const dictionary& cellSizeFunctionDict,
- const searchableSurface& surface
-)
-:
- surfaceCellSizeFunction(typeName, cellSizeFunctionDict, surface),
- surfaceCellSize_(readScalar(coeffsDict().lookup("surfaceCellSize")))
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-const Foam::scalar& Foam::uniformValue::surfaceSize(const label index) const
-{
- return surfaceCellSize_;
-}
-
-
-const Foam::scalar& Foam::uniformValue::refineSurfaceSize(const label index)
-{
- surfaceCellSize_ *= refinementFactor_;
-
- return surfaceCellSize_;
-}
-
-
-Foam::scalar Foam::uniformValue::interpolate
-(
- const point& pt,
- const label index
-) const
-{
- return surfaceCellSize_;
-}
-
-
-void Foam::uniformValue::recalculateInterpolation() const
-{}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/uniformValue/uniformValue.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/uniformValue/uniformValue.H
deleted file mode 100644
index 36778379332e25a5efa8d78adaee94409824442f..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cellSizeControlSurfaces/surfaceCellSizeFunction/uniformValue/uniformValue.H
+++ /dev/null
@@ -1,105 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::uniformValue
-
-Description
-
-SourceFiles
- uniformValue.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef uniformValue_H
-#define uniformValue_H
-
-#include "surfaceCellSizeFunction.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class uniformValue Declaration
-\*---------------------------------------------------------------------------*/
-
-class uniformValue
-:
- public surfaceCellSizeFunction
-{
-
-private:
-
- // Private data
-
- scalar surfaceCellSize_;
-
-
-public:
-
- //- Runtime type information
- TypeName("uniformValue");
-
-
- // Constructors
-
- //- Construct from components
- uniformValue
- (
- const dictionary& cellSizeFunctionDict,
- const searchableSurface& surface
- );
-
-
- //- Destructor
- virtual ~uniformValue()
- {}
-
-
- // Member Functions
-
- virtual const scalar& surfaceSize(const label index) const;
-
- virtual const scalar& refineSurfaceSize(const label index);
-
- virtual scalar interpolate
- (
- const point& pt,
- const label index
- ) const;
-
- virtual void recalculateInterpolation() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3DKernel.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3DKernel.H
deleted file mode 100644
index e80b3fb8f4b428ee42d4f739c582e4d429aafe35..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3DKernel.H
+++ /dev/null
@@ -1,62 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Typedefs
- CGALTriangulation3DKernel
-
-Description
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef CGALTriangulation3DKernel_H
-#define CGALTriangulation3DKernel_H
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "CGAL/Delaunay_triangulation_3.h"
-
-#ifdef CGAL_INEXACT
-
- // Fast kernel using a double as the storage type but the triangulation may
- // fail. Adding robust circumcentre traits
- #include "CGAL/Exact_predicates_inexact_constructions_kernel.h"
- typedef CGAL::Exact_predicates_inexact_constructions_kernel baseK;
-// #include <CGAL/Robust_circumcenter_traits_3.h>
- #include <CGAL/Robust_circumcenter_filtered_traits_3.h>
-// typedef CGAL::Robust_circumcenter_traits_3<baseK> K;
- typedef CGAL::Robust_circumcenter_filtered_traits_3<baseK> K;
-
-#else
-
- // Very robust but expensive kernel
- #include "CGAL/Exact_predicates_exact_constructions_kernel.h"
- typedef CGAL::Exact_predicates_exact_constructions_kernel baseK;
- typedef CGAL::Exact_predicates_exact_constructions_kernel K;
-
-#endif
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3Ddefs.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3Ddefs.H
deleted file mode 100644
index 4e7dd48c38c76ffe152bf7d194881540ca0c2381..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/CGALTriangulation3Ddefs.H
+++ /dev/null
@@ -1,60 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Typedefs
- CGALTriangulation3Ddefs
-
-Description
- CGAL data structures used for 3D Delaunay meshing.
-
- Define CGAL_INEXACT to use Exact_predicates_inexact_constructions kernel
- otherwise the more robust but much less efficient
- Exact_predicates_exact_constructions will be used.
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef CGALTriangulation3Ddefs_H
-#define CGALTriangulation3Ddefs_H
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "CGALTriangulation3DKernel.H"
-
-#include "indexedVertex.H"
-#include "indexedCell.H"
-
-typedef CGAL::indexedVertex<K> Vb;
-typedef CGAL::indexedCell<K> Cb;
-
-typedef CGAL::Compact_location CompactLocator;
-typedef CGAL::Fast_location FastLocator;
-
-typedef CGAL::Triangulation_data_structure_3<Vb, Cb> Tds;
-typedef CGAL::Delaunay_triangulation_3<K, Tds, CompactLocator> Delaunay;
-typedef CGAL::Delaunay_triangulation_3<K, Tds, FastLocator> CellSizeDelaunay;
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMesh.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMesh.C
deleted file mode 100644
index ec6ca47901b5f55ced91f7a976b2e94360c2bd32..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMesh.C
+++ /dev/null
@@ -1,2224 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "conformalVoronoiMesh.H"
-#include "initialPointsMethod.H"
-#include "relaxationModel.H"
-#include "faceAreaWeightModel.H"
-#include "meshSearch.H"
-#include "vectorTools.H"
-#include "IOmanip.H"
-#include "indexedCellChecks.H"
-
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-defineTypeNameAndDebug(conformalVoronoiMesh, 0);
-
-}
-
-const Foam::scalar Foam::conformalVoronoiMesh::tolParallel = 1e-3;
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-void Foam::conformalVoronoiMesh::cellSizeMeshOverlapsBackground() const
-{
- const cellShapeControlMesh& cellSizeMesh =
- cellShapeControl_.shapeControlMesh();
-
- DynamicList<Foam::point> pts(number_of_vertices());
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalOrBoundaryPoint())
- {
- pts.append(topoint(vit->point()));
- }
- }
-
- boundBox bb(pts);
-
- boundBox cellSizeMeshBb = cellSizeMesh.bounds();
-
- bool fullyContained = true;
-
- if (!cellSizeMeshBb.contains(bb))
- {
- Pout<< "Triangulation not fully contained in cell size mesh."
- << endl;
-
- Pout<< "Cell Size Mesh Bounds = " << cellSizeMesh.bounds() << endl;
- Pout<< "cvMesh Bounds = " << bb << endl;
-
- fullyContained = false;
- }
-
- reduce(fullyContained, andOp<unsigned int>());
-
- Info<< "Triangulation is "
- << (fullyContained ? "fully" : "not fully")
- << " contained in the cell size mesh"
- << endl;
-}
-
-
-Foam::scalar Foam::conformalVoronoiMesh::requiredSize
-(
- const Foam::point& pt
-) const
-{
- pointIndexHit surfHit;
- label hitSurface;
-
- DynamicList<scalar> cellSizeHits;
-
- geometryToConformTo_.findSurfaceNearest
- (
- pt,
- sqr(GREAT),
- surfHit,
- hitSurface
- );
-
- if (!surfHit.hit())
- {
- FatalErrorIn
- (
- "Foam::tensor Foam::conformalVoronoiMesh::requiredAlignment"
- )
- << "findSurfaceNearest did not find a hit across the surfaces."
- << exit(FatalError) << endl;
- }
-
- cellSizeHits.append(cellShapeControls().cellSize(pt));
-
- // Primary alignment
-
- vectorField norm(1);
-
- allGeometry_[hitSurface].getNormal
- (
- List<pointIndexHit>(1, surfHit),
- norm
- );
-
- const vector np = norm[0];
-
- // Generate equally spaced 'spokes' in a circle normal to the
- // direction from the vertex to the closest point on the surface
- // and look for a secondary intersection.
-
- const vector d = surfHit.hitPoint() - pt;
-
- const tensor Rp = rotationTensor(vector(0,0,1), np);
-
- const label s = cvMeshControls().alignmentSearchSpokes();
-
- const scalar spanMag = geometryToConformTo_.globalBounds().mag();
-
- scalar totalDist = 0;
-
- for (label i = 0; i < s; i++)
- {
- vector spoke
- (
- Foam::cos(i*constant::mathematical::twoPi/s),
- Foam::sin(i*constant::mathematical::twoPi/s),
- 0
- );
-
- spoke *= spanMag;
-
- spoke = Rp & spoke;
-
- pointIndexHit spokeHit;
-
- label spokeSurface = -1;
-
- // internal spoke
-
- geometryToConformTo_.findSurfaceNearestIntersection
- (
- pt,
- pt + spoke,
- spokeHit,
- spokeSurface
- );
-
- if (spokeHit.hit())
- {
- const Foam::point& hitPt = spokeHit.hitPoint();
-
- scalar spokeHitDistance = mag(hitPt - pt);
-
- cellSizeHits.append
- (
- cellShapeControls().cellSize(hitPt)
- );
-
- totalDist += spokeHitDistance;
- }
-
- //external spoke
-
- Foam::point mirrorPt = pt + 2*d;
-
- geometryToConformTo_.findSurfaceNearestIntersection
- (
- mirrorPt,
- mirrorPt + spoke,
- spokeHit,
- spokeSurface
- );
-
- if (spokeHit.hit())
- {
- const Foam::point& hitPt = spokeHit.hitPoint();
-
- scalar spokeHitDistance = mag(hitPt - mirrorPt);
-
- cellSizeHits.append
- (
- cellShapeControls().cellSize(hitPt)
- );
-
- totalDist += spokeHitDistance;
- }
- }
-
- scalar cellSize = 0;
-
- forAll(cellSizeHits, hitI)
- {
- cellSize += cellSizeHits[hitI];
- }
-
- return cellSize/cellSizeHits.size();
- //return cellShapeControls().cellSize(pt);
-}
-
-
-Foam::tensor Foam::conformalVoronoiMesh::requiredAlignment
-(
- const Foam::point& pt
-) const
-{
- pointIndexHit surfHit;
- label hitSurface;
-
- geometryToConformTo_.findSurfaceNearest
- (
- pt,
- sqr(GREAT),
- surfHit,
- hitSurface
- );
-
- if (!surfHit.hit())
- {
- FatalErrorIn
- (
- "Foam::tensor Foam::conformalVoronoiMesh::requiredAlignment"
- )
- << "findSurfaceNearest did not find a hit across the surfaces."
- << exit(FatalError) << endl;
- }
-
- // Primary alignment
-
- vectorField norm(1);
-
- allGeometry_[hitSurface].getNormal
- (
- List<pointIndexHit>(1, surfHit),
- norm
- );
-
- const vector np = norm[0];
-
- // Generate equally spaced 'spokes' in a circle normal to the
- // direction from the vertex to the closest point on the surface
- // and look for a secondary intersection.
-
- const vector d = surfHit.hitPoint() - pt;
-
- const tensor Rp = rotationTensor(vector(0,0,1), np);
-
- const label s = cvMeshControls().alignmentSearchSpokes();
-
- scalar closestSpokeHitDistance = GREAT;
-
- pointIndexHit closestSpokeHit;
-
- label closestSpokeSurface = -1;
-
- const scalar spanMag = geometryToConformTo_.globalBounds().mag();
-
- for (label i = 0; i < s; i++)
- {
- vector spoke
- (
- Foam::cos(i*constant::mathematical::twoPi/s),
- Foam::sin(i*constant::mathematical::twoPi/s),
- 0
- );
-
- spoke *= spanMag;
-
- spoke = Rp & spoke;
-
- pointIndexHit spokeHit;
-
- label spokeSurface = -1;
-
- // internal spoke
-
- geometryToConformTo_.findSurfaceNearestIntersection
- (
- pt,
- pt + spoke,
- spokeHit,
- spokeSurface
- );
-
- if (spokeHit.hit())
- {
- scalar spokeHitDistance = mag
- (
- spokeHit.hitPoint() - pt
- );
-
- if (spokeHitDistance < closestSpokeHitDistance)
- {
- closestSpokeHit = spokeHit;
- closestSpokeSurface = spokeSurface;
- closestSpokeHitDistance = spokeHitDistance;
- }
- }
-
- //external spoke
-
- Foam::point mirrorPt = pt + 2*d;
-
- geometryToConformTo_.findSurfaceNearestIntersection
- (
- mirrorPt,
- mirrorPt + spoke,
- spokeHit,
- spokeSurface
- );
-
- if (spokeHit.hit())
- {
- scalar spokeHitDistance = mag
- (
- spokeHit.hitPoint() - mirrorPt
- );
-
- if (spokeHitDistance < closestSpokeHitDistance)
- {
- closestSpokeHit = spokeHit;
- closestSpokeSurface = spokeSurface;
- closestSpokeHitDistance = spokeHitDistance;
- }
- }
- }
-
- if (closestSpokeSurface == -1)
- {
- WarningIn
- (
- "conformalVoronoiMesh::requiredAlignment"
- "("
- "const Foam::point& pt"
- ") const"
- ) << "No secondary surface hit found in spoke search "
- << "using " << s
- << " spokes, try increasing alignmentSearchSpokes."
- << endl;
-
- return I;
- }
-
- // Auxiliary alignment generated by spoke intersection normal.
-
- allGeometry_[closestSpokeSurface].getNormal
- (
- List<pointIndexHit>(1, closestSpokeHit),
- norm
- );
-
- const vector& na = norm[0];
-
- // Secondary alignment
- vector ns = np ^ na;
-
- if (mag(ns) < SMALL)
- {
- FatalErrorIn("conformalVoronoiMesh::requiredAlignment")
- << "Parallel normals detected in spoke search." << nl
- << "point: " << pt << nl
- << "closest surface point: " << surfHit.hitPoint() << nl
- << "closest spoke hit: " << closestSpokeHit.hitPoint() << nl
- << "np: " << surfHit.hitPoint() + np << nl
- << "ns: " << closestSpokeHit.hitPoint() + na << nl
- << exit(FatalError);
- }
-
- ns /= mag(ns);
-
- tensor Rs = rotationTensor((Rp & vector(0,1,0)), ns);
-
- return (Rs & Rp);
-}
-
-
-void Foam::conformalVoronoiMesh::insertInternalPoints
-(
- List<Point>& points,
- bool distribute
-)
-{
- label nPoints = points.size();
-
- if (Pstream::parRun())
- {
- reduce(nPoints, sumOp<label>());
- }
-
- Info<< " " << nPoints << " points to insert..." << endl;
-
- if (Pstream::parRun() && distribute)
- {
- List<Foam::point> transferPoints(points.size());
-
- forAll(points, pI)
- {
- transferPoints[pI] = topoint(points[pI]);
- }
-
- // Send the points that are not on this processor to the appropriate
- // place
- Foam::autoPtr<Foam::mapDistribute> map
- (
- decomposition_().distributePoints(transferPoints)
- );
-
- map().distribute(points);
- }
-
- label nVert = number_of_vertices();
-
- // using the range insert (faster than inserting points one by one)
- insert(points.begin(), points.end());
-
- label nInserted(number_of_vertices() - nVert);
-
- if (Pstream::parRun())
- {
- reduce(nInserted, sumOp<label>());
- }
-
- Info<< " " << nInserted << " points inserted"
- << ", failed to insert " << nPoints - nInserted
- << " ("
- << 100.0*(nPoints - nInserted)/nInserted
- << " %)"<< endl;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->uninitialised())
- {
- vit->index() = getNewVertexIndex();
- vit->type() = Vb::vtInternal;
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::insertPoints
-(
- List<Vb>& vertices,
- bool distribute
-)
-{
- if (Pstream::parRun() && distribute)
- {
- const label preDistributionSize = vertices.size();
-
- List<Foam::point> pts(preDistributionSize);
-
- forAll(vertices, vI)
- {
- const Foam::point& pt = topoint(vertices[vI].point());
-
- pts[vI] = pt;
- }
-
- // Distribute points to their appropriate processor
- autoPtr<mapDistribute> map
- (
- decomposition_().distributePoints(pts)
- );
-
- map().distribute(vertices);
-
- forAll(vertices, vI)
- {
- vertices[vI].procIndex() = Pstream::myProcNo();
- }
- }
-
- rangeInsertWithInfo
- (
- vertices.begin(),
- vertices.end(),
- true
- );
-}
-
-
-void Foam::conformalVoronoiMesh::insertSurfacePointPairs
-(
- const pointIndexHitAndFeatureList& surfaceHits,
- const fileName fName
-)
-{
- DynamicList<Vb> pts(2.0*surfaceHits.size());
-
- forAll(surfaceHits, i)
- {
- vectorField norm(1);
-
- const pointIndexHit surfaceHit = surfaceHits[i].first();
- const label featureIndex = surfaceHits[i].second();
-
- allGeometry_[featureIndex].getNormal
- (
- List<pointIndexHit>(1, surfaceHit),
- norm
- );
-
- const vector& normal = norm[0];
-
- const Foam::point& surfacePt(surfaceHit.hitPoint());
-
- if (geometryToConformTo_.isBaffle(featureIndex))
- {
- createBafflePointPair
- (
- pointPairDistance(surfacePt),
- surfacePt,
- normal,
- pts
- );
- }
- else
- {
- createPointPair
- (
- pointPairDistance(surfacePt),
- surfacePt,
- normal,
- pts
- );
- }
- }
-
- insertPoints(pts, true);
-
- if (cvMeshControls().objOutput() && fName != fileName::null)
- {
- writePoints(fName, pts);
- }
-}
-
-
-void Foam::conformalVoronoiMesh::insertEdgePointGroups
-(
- const pointIndexHitAndFeatureList& edgeHits,
- const fileName fName
-)
-{
- DynamicList<Vb> pts(3.0*edgeHits.size());
-
- forAll(edgeHits, i)
- {
- const extendedFeatureEdgeMesh& feMesh
- (
- geometryToConformTo_.features()[edgeHits[i].second()]
- );
-
- createEdgePointGroup(feMesh, edgeHits[i].first(), pts);
- }
-
- pts.shrink();
-
- insertPoints(pts, true);
-
- if (cvMeshControls().objOutput() && fName != fileName::null)
- {
- writePoints(fName, pts);
- }
-}
-
-
-bool Foam::conformalVoronoiMesh::nearFeaturePt(const Foam::point& pt) const
-{
- scalar exclusionRangeSqr = featurePointExclusionDistanceSqr(pt);
-
- pointIndexHit info;
- label featureHit;
-
- geometryToConformTo_.findFeaturePointNearest
- (
- pt,
- exclusionRangeSqr,
- info,
- featureHit
- );
-
- return info.hit();
-}
-
-
-void Foam::conformalVoronoiMesh::insertInitialPoints()
-{
- Info<< nl << "Inserting initial points" << endl;
-
- timeCheck("Before initial points call");
-
- List<Point> initPts = initialPointsMethod_->initialPoints();
-
- timeCheck("After initial points call");
-
- // Assume that the initial points method made the correct decision for
- // which processor each point should be on, so give distribute = false
- insertInternalPoints(initPts);
-}
-
-
-Foam::scalar Foam::conformalVoronoiMesh::calculateLoadUnbalance() const
-{
- label nRealVertices = 0;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- // Only store real vertices that are not feature vertices
- if (vit->real() && !vit->featurePoint())
- {
- nRealVertices++;
- }
- }
-
- scalar globalNRealVertices = returnReduce
- (
- nRealVertices,
- sumOp<label>()
- );
-
- scalar unbalance = returnReduce
- (
- mag(1.0 - nRealVertices/(globalNRealVertices/Pstream::nProcs())),
- maxOp<scalar>()
- );
-
- Info<< " Processor unbalance " << unbalance << endl;
-
- return unbalance;
-}
-
-
-bool Foam::conformalVoronoiMesh::distributeBackground()
-{
- if (!Pstream::parRun())
- {
- return false;
- }
-
- Info<< nl << "Redistributing points" << endl;
-
- timeCheck("Before distribute");
-
- label iteration = 0;
-
- scalar previousLoadUnbalance = 0;
-
- while (true)
- {
- scalar maxLoadUnbalance = calculateLoadUnbalance();
-
- if
- (
- maxLoadUnbalance <= cvMeshControls().maxLoadUnbalance()
- || maxLoadUnbalance <= previousLoadUnbalance
- )
- {
- // If this is the first iteration, return false, if it was a
- // subsequent one, return true;
- return iteration != 0;
- }
-
- previousLoadUnbalance = maxLoadUnbalance;
-
- Info<< " Total number of vertices before redistribution "
- << returnReduce(label(number_of_vertices()), sumOp<label>())
- << endl;
-
- const fvMesh& bMesh = decomposition_().mesh();
-
- volScalarField cellWeights
- (
- IOobject
- (
- "cellWeights",
- bMesh.time().timeName(),
- bMesh,
- IOobject::NO_READ,
- IOobject::NO_WRITE
- ),
- bMesh,
- dimensionedScalar("weight", dimless, 1e-2),
- zeroGradientFvPatchScalarField::typeName
- );
-
- meshSearch cellSearch(bMesh, polyMesh::FACEPLANES);
-
- labelList cellVertices(bMesh.nCells(), 0);
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- // Only store real vertices that are not feature vertices
- if (vit->real() && !vit->featurePoint())
- {
- pointFromPoint v = topoint(vit->point());
-
- label cellI = cellSearch.findCell(v);
-
- if (cellI == -1)
- {
-// Pout<< "findCell conformalVoronoiMesh::distribute "
-// << "findCell "
-// << vit->type() << " "
-// << vit->index() << " "
-// << v << " "
-// << cellI
-// << " find nearest cellI ";
-
- cellI = cellSearch.findNearestCell(v);
- }
-
- cellVertices[cellI]++;
- }
- }
-
- forAll(cellVertices, cI)
- {
- // Give a small but finite weight for empty cells. Some
- // decomposition methods have difficulty with integer overflows in
- // the sum of the normalised weight field.
- cellWeights.internalField()[cI] = max
- (
- cellVertices[cI],
- 1e-2
- );
- }
-
- autoPtr<mapDistributePolyMesh> mapDist = decomposition_().distribute
- (
- cellWeights
- );
-
- cellShapeControl_.shapeControlMesh().distribute(decomposition_);
-
- distribute();
-
- timeCheck("After distribute");
-
- iteration++;
- }
-
- return true;
-}
-
-
-void Foam::conformalVoronoiMesh::distribute()
-{
- if (!Pstream::parRun())
- {
- return ;
- }
-
- autoPtr<mapDistribute> mapDist =
- DistributedDelaunayMesh<Delaunay>::distribute(decomposition_());
-
- DynamicList<Foam::point> points(number_of_vertices());
- DynamicList<Foam::indexedVertexEnum::vertexType> types
- (
- number_of_vertices()
- );
- DynamicList<scalar> sizes(number_of_vertices());
- DynamicList<tensor> alignments(number_of_vertices());
-
- for
- (
- Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->real())
- {
- points.append(topoint(vit->point()));
- types.append(vit->type());
- sizes.append(vit->targetCellSize());
- alignments.append(vit->alignment());
- }
- }
-
- mapDist().distribute(points);
- mapDist().distribute(types);
- mapDist().distribute(sizes);
- mapDist().distribute(alignments);
-
- // Reset the entire tessellation
- DelaunayMesh<Delaunay>::reset();
-
- Info<< nl << " Inserting distributed tessellation" << endl;
-
- // Internal points have to be inserted first
-
- DynamicList<Vb> verticesToInsert(points.size());
-
- forAll(points, pI)
- {
- verticesToInsert.append
- (
- Vb
- (
- toPoint<Point>(points[pI]),
- -1,
- types[pI],
- Pstream::myProcNo()
- )
- );
-
- verticesToInsert.last().targetCellSize() = sizes[pI];
- verticesToInsert.last().alignment() = alignments[pI];
- }
-
- this->rangeInsertWithInfo
- (
- verticesToInsert.begin(),
- verticesToInsert.end(),
- true
- );
-
- Info<< " Total number of vertices after redistribution "
- << returnReduce
- (
- label(number_of_vertices()), sumOp<label>()
- )
- << endl;
-}
-
-
-void Foam::conformalVoronoiMesh::buildCellSizeAndAlignmentMesh()
-{
- cellShapeControl_.initialMeshPopulation(decomposition_);
-
- cellShapeControlMesh& cellSizeMesh = cellShapeControl_.shapeControlMesh();
-
- if (Pstream::parRun())
- {
- cellSizeMesh.distribute(decomposition_);
- }
-
- label nMaxIter = readLabel
- (
- cvMeshControls().cvMeshDict().subDict("motionControl").lookup
- (
- "maxRefinementIterations"
- )
- );
-
- Info<< "Maximum number of refinement iterations : " << nMaxIter << endl;
-
- for (label i = 0; i < nMaxIter; ++i)
- {
-// label nRemoved = cellSizeMesh.removePoints();
- label nRemoved = 0;
- reduce(nRemoved, sumOp<label>());
-
- label nAdded = cellShapeControl_.refineMesh(decomposition_);
-// label nAdded = 0;
- reduce(nAdded, sumOp<label>());
-
- if (Pstream::parRun())
- {
- cellSizeMesh.distribute(decomposition_);
- }
-
- if (nRemoved + nAdded == 0)
- {
- break;
- }
-
- Info<< " Iteration " << i
- << " Added = " << nAdded << " points"
- << ", Removed = " << nRemoved << " points"
- << endl;
- }
-
- cellShapeControl_.smoothMesh();
-
- Info<< "Background cell size and alignment mesh:" << endl;
- cellSizeMesh.printInfo(Info);
-
- if (cvMeshControls().objOutput())
- {
- cellSizeMesh.writeTriangulation();
- cellSizeMesh.write();
- }
-}
-
-
-void Foam::conformalVoronoiMesh::storeSizesAndAlignments()
-{
- DynamicList<Point> storePts(number_of_vertices());
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- vit++
- )
- {
- if (vit->internalPoint())
- {
- storePts.append(vit->point());
- }
- }
-
- storePts.shrink();
-
- storeSizesAndAlignments(storePts);
-}
-
-
-void Foam::conformalVoronoiMesh::storeSizesAndAlignments
-(
- const List<Point>& storePts
-)
-{
-// timeCheck("Start of storeSizesAndAlignments");
-//
-// Info << nl << "Store size and alignment" << endl;
-//
-// sizeAndAlignmentLocations_.setSize(storePts.size());
-//
-// storedSizes_.setSize(sizeAndAlignmentLocations_.size());
-//
-// storedAlignments_.setSize(sizeAndAlignmentLocations_.size());
-//
-// label i = 0;
-//
-// //checkCellSizing();
-//
-// for
-// (
-// List<Point>::const_iterator pit = storePts.begin();
-// pit != storePts.end();
-// ++pit
-// )
-// {
-// pointFromPoint pt = topoint(*pit);
-//
-//// storedAlignments_[i] = requiredAlignment(pt);
-////
-//// storedSizes_[i] = cellShapeControls().cellSize(pt);
-//
-// cellShapeControls().cellSizeAndAlignment
-// (
-// pt,
-// storedSizes_[i],
-// storedAlignments_[i]
-// );
-//
-// i++;
-// }
-//
-// timeCheck("Sizes and alignments calculated, build tree");
-//
-// buildSizeAndAlignmentTree();
-//
-// timeCheck("Size and alignment tree built");
-}
-
-
-void Foam::conformalVoronoiMesh::updateSizesAndAlignments
-(
- const List<Point>& storePts
-)
-{
- // This function is only used in serial, the background redistribution
- // triggers this when unbalance is detected in parallel.
-
- if
- (
- !Pstream::parRun()
- && runTime_.run()
- && runTime_.timeIndex()
- % cvMeshControls().sizeAndAlignmentRebuildFrequency() == 0
- )
- {
- storeSizesAndAlignments(storePts);
-
- timeCheck("Updated sizes and alignments");
- }
-}
-
-
-const Foam::indexedOctree<Foam::treeDataPoint>&
-Foam::conformalVoronoiMesh::sizeAndAlignmentTree() const
-{
- if (sizeAndAlignmentTreePtr_.empty())
- {
- buildSizeAndAlignmentTree();
- }
-
- return sizeAndAlignmentTreePtr_();
-}
-
-
-void Foam::conformalVoronoiMesh::setVertexSizeAndAlignment()
-{
-// Info<< nl << "Looking up target cell alignment and size" << endl;
-//
-// const indexedOctree<treeDataPoint>& tree = sizeAndAlignmentTree();
-//
-// for
-// (
-// Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
-// vit != finite_vertices_end();
-// vit++
-// )
-// {
-// if
-// (
-// vit->internalOrBoundaryPoint()
-// || vit->referredInternalOrBoundaryPoint()
-// )
-// {
-// pointFromPoint pt = topoint(vit->point());
-//
-// pointIndexHit info = tree.findNearest(pt, sqr(GREAT));
-//
-// if (info.hit())
-// {
-// vit->alignment() = storedAlignments_[info.index()];
-//
-// vit->targetCellSize() = storedSizes_[info.index()];
-// }
-// else
-// {
-// WarningIn
-// (
-// "void "
-// "Foam::conformalVoronoiMesh::setVertexSizeAndAlignment()"
-// )
-// << "Point " << pt << " did not find a nearest point "
-// << " for alignment and size lookup." << endl;
-//
-// vit->alignment() = cellShapeControls().cellAlignment(pt);
-//
-// vit->targetCellSize() = cellShapeControls().cellSize(pt);
-// }
-// }
-// }
-
- Info<< nl << "Calculating target cell alignment and size" << endl;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- vit++
- )
- {
- if (vit->internalOrBoundaryPoint())
- {
- pointFromPoint pt = topoint(vit->point());
-
- cellShapeControls().cellSizeAndAlignment
- (
- pt,
- vit->targetCellSize(),
- vit->alignment()
- );
-
- //vit->alignment() = tensor(1,0,0,0,1,0,0,0,1);
- //vit->alignment() = requiredAlignment(pt);
-
- //vit->targetCellSize() = cellShapeControls().cellSize(pt);
- }
- }
-}
-
-
-Foam::face Foam::conformalVoronoiMesh::buildDualFace
-(
- const Delaunay::Finite_edges_iterator& eit
-) const
-{
- Cell_circulator ccStart = incident_cells(*eit);
- Cell_circulator cc1 = ccStart;
- Cell_circulator cc2 = cc1;
-
- // Advance the second circulator so that it always stays on the next
- // cell around the edge;
- cc2++;
-
- DynamicList<label> verticesOnFace;
-
- label nUniqueVertices = 0;
-
- do
- {
- if
- (
- cc1->hasFarPoint() || cc2->hasFarPoint()
- || is_infinite(cc1) || is_infinite(cc2)
- )
- {
- Cell_handle c = eit->first;
- Vertex_handle vA = c->vertex(eit->second);
- Vertex_handle vB = c->vertex(eit->third);
-
- drawDelaunayCell(Pout, cc1);
- drawDelaunayCell(Pout, cc2);
-
- FatalErrorIn("Foam::conformalVoronoiMesh::buildDualFace")
- << "Dual face uses circumcenter defined by a "
- << "Delaunay tetrahedron with no internal "
- << "or boundary points. Defining Delaunay edge ends: "
- << topoint(vA->point()) << " "
- << topoint(vB->point()) << nl
- << exit(FatalError);
- }
-
- label cc1I = cc1->cellIndex();
-
- label cc2I = cc2->cellIndex();
-
- if (cc1I != cc2I)
- {
- if (findIndex(verticesOnFace, cc1I) == -1)
- {
- nUniqueVertices++;
- }
-
- verticesOnFace.append(cc1I);
- }
-
- cc1++;
-
- cc2++;
-
- } while (cc1 != ccStart);
-
- verticesOnFace.shrink();
-
- if (verticesOnFace.size() >= 3 && nUniqueVertices < 3)
- {
- // There are not enough unique vertices on this face to
- // justify its size, it may have a form like:
-
- // Vertices:
- // A B
- // A B
-
- // Face:
- // ABAB
-
- // Setting the size to be below 3, so that it will not be
- // created
-
- verticesOnFace.setSize(nUniqueVertices);
- }
-
- return face(verticesOnFace);
-}
-
-
-Foam::label Foam::conformalVoronoiMesh::maxFilterCount
-(
- const Delaunay::Finite_edges_iterator& eit
-) const
-{
- Cell_circulator ccStart = incident_cells(*eit);
- Cell_circulator cc = ccStart;
-
- label maxFC = 0;
-
- do
- {
- if (cc->hasFarPoint())
- {
- Cell_handle c = eit->first;
- Vertex_handle vA = c->vertex(eit->second);
- Vertex_handle vB = c->vertex(eit->third);
-
- FatalErrorIn("Foam::conformalVoronoiMesh::buildDualFace")
- << "Dual face uses circumcenter defined by a "
- << "Delaunay tetrahedron with no internal "
- << "or boundary points. Defining Delaunay edge ends: "
- << topoint(vA->point()) << " "
- << topoint(vB->point()) << nl
- << exit(FatalError);
- }
-
- if (cc->filterCount() > maxFC)
- {
- maxFC = cc->filterCount();
- }
-
- cc++;
-
- } while (cc != ccStart);
-
- return maxFC;
-}
-
-
-bool Foam::conformalVoronoiMesh::ownerAndNeighbour
-(
- Vertex_handle vA,
- Vertex_handle vB,
- label& owner,
- label& neighbour
-) const
-{
- bool reverse = false;
-
- owner = -1;
- neighbour = -1;
-
- label dualCellIndexA = vA->index();
-
- if (!vA->internalOrBoundaryPoint() || vA->referred())
- {
- dualCellIndexA = -1;
- }
-
- label dualCellIndexB = vB->index();
-
- if (!vB->internalOrBoundaryPoint() || vB->referred())
- {
- dualCellIndexB = -1;
- }
-
- if (dualCellIndexA == -1 && dualCellIndexB == -1)
- {
- FatalErrorIn
- (
- "bool Foam::conformalVoronoiMesh::ownerAndNeighbour"
- "("
- "Vertex_handle vA,"
- "Vertex_handle vB,"
- "label& owner,"
- "label& neighbour"
- ") const"
- )
- << "Attempting to create a face joining "
- << "two unindexed dual cells "
- << exit(FatalError);
- }
- else if (dualCellIndexA == -1 || dualCellIndexB == -1)
- {
- // boundary face, find which is the owner
-
- if (dualCellIndexA == -1)
- {
- owner = dualCellIndexB;
-
- reverse = true;
- }
- else
- {
- owner = dualCellIndexA;
- }
- }
- else
- {
- // internal face, find the lower cell to be the owner
-
- if (dualCellIndexB > dualCellIndexA)
- {
- owner = dualCellIndexA;
- neighbour = dualCellIndexB;
- }
- else
- {
- owner = dualCellIndexB;
- neighbour = dualCellIndexA;
-
- // reverse face order to correctly orientate normal
- reverse = true;
- }
- }
-
- return reverse;
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::conformalVoronoiMesh::conformalVoronoiMesh
-(
- const Time& runTime,
- const dictionary& cvMeshDict
-)
-:
- DistributedDelaunayMesh<Delaunay>(),
- runTime_(runTime),
- rndGen_(64293*Pstream::myProcNo()),
- cvMeshControls_(cvMeshDict),
- allGeometry_
- (
- IOobject
- (
- "cvSearchableSurfaces",
- runTime_.constant(),
- "triSurface",
- runTime_,
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- cvMeshDict.subDict("geometry")
- ),
- geometryToConformTo_
- (
- runTime_,
- rndGen_,
- allGeometry_,
- cvMeshDict.subDict("surfaceConformation")
- ),
- cellShapeControl_
- (
- runTime_,
- cvMeshDict.subDict("motionControl"),
- allGeometry_,
- geometryToConformTo_
- ),
- limitBounds_(),
- featureVertices_(),
- featurePointLocations_(),
- edgeLocationTreePtr_(),
- surfacePtLocationTreePtr_(),
- sizeAndAlignmentLocations_(),
- storedSizes_(),
- storedAlignments_(),
- sizeAndAlignmentTreePtr_(),
- surfaceConformationVertices_(),
- initialPointsMethod_
- (
- initialPointsMethod::New
- (
- cvMeshDict.subDict("initialPoints"),
- *this
- )
- ),
- relaxationModel_
- (
- relaxationModel::New
- (
- cvMeshDict.subDict("motionControl"),
- runTime_
- )
- ),
- faceAreaWeightModel_
- (
- faceAreaWeightModel::New
- (
- cvMeshDict.subDict("motionControl")
- )
- ),
- decomposition_()
-{
- if (cvMeshControls().objOutput())
- {
- geometryToConformTo_.writeFeatureObj("cvMesh");
- }
-
- if (Pstream::parRun())
- {
- decomposition_.reset
- (
- new backgroundMeshDecomposition
- (
- runTime_,
- rndGen_,
- geometryToConformTo_,
- cvMeshDict.subDict("backgroundMeshDecomposition")
- )
- );
- }
-
- buildCellSizeAndAlignmentMesh();
-
- insertInitialPoints();
-
- insertFeaturePoints();
-
- setVertexSizeAndAlignment();
-
- cellSizeMeshOverlapsBackground();
-
- // Improve the guess that the backgroundMeshDecomposition makes with the
- // initial positions. Use before building the surface conformation to
- // better balance the surface conformation load.
- distributeBackground();
-
- buildSurfaceConformation();
-
- // The introduction of the surface conformation may have distorted the
- // balance of vertices, distribute if necessary.
- distributeBackground();
-
- if (Pstream::parRun())
- {
- sync(decomposition_().procBounds());
- }
-
- // Do not store the surface conformation until after it has been
- // (potentially) redistributed.
- storeSurfaceConformation();
-
- // Use storeSizesAndAlignments with no feed points because all background
- // points may have been distributed.
- storeSizesAndAlignments();
-
- // Report any Delaunay vertices that do not think that they are in the
- // domain the processor they are on.
- // reportProcessorOccupancy();
-
- cellSizeMeshOverlapsBackground();
-
- printVertexInfo();
-
- if (cvMeshControls().objOutput())
- {
- writePoints
- (
- "internalPoints_" + runTime_.timeName() + ".obj",
- Foam::indexedVertexEnum::vtUnassigned,
- Foam::indexedVertexEnum::vtExternalFeaturePoint
- );
- }
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::conformalVoronoiMesh::~conformalVoronoiMesh()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-void Foam::conformalVoronoiMesh::move()
-{
- timeCheck("Start of move");
-
- scalar relaxation = relaxationModel_->relaxation();
-
- Info<< nl << "Relaxation = " << relaxation << endl;
-
- pointField dualVertices(number_of_finite_cells());
-
- this->resetCellCount();
-
- // Find the dual point of each tetrahedron and assign it an index.
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- cit->cellIndex() = Cb::ctUnassigned;
-
- if (cit->anyInternalOrBoundaryDualVertex())
- {
- cit->cellIndex() = getNewCellIndex();
-
- dualVertices[cit->cellIndex()] = cit->dual();
- }
-
- if (cit->hasFarPoint())
- {
- cit->cellIndex() = Cb::ctFar;
- }
- }
-
- dualVertices.setSize(cellCount());
-
- setVertexSizeAndAlignment();
-
- timeCheck("Determined sizes and alignments");
-
- Info<< nl << "Determining vertex displacements" << endl;
-
- vectorField cartesianDirections(3);
-
- cartesianDirections[0] = vector(1, 0, 0);
- cartesianDirections[1] = vector(0, 1, 0);
- cartesianDirections[2] = vector(0, 0, 1);
-
- vectorField displacementAccumulator
- (
- number_of_vertices(),
- vector::zero
- );
-
- PackedBoolList pointToBeRetained
- (
- number_of_vertices(),
- true
- );
-
- DynamicList<Point> pointsToInsert(number_of_vertices());
-
- for
- (
- Delaunay::Finite_edges_iterator eit = finite_edges_begin();
- eit != finite_edges_end();
- ++eit
- )
- {
- Cell_handle c = eit->first;
- Vertex_handle vA = c->vertex(eit->second);
- Vertex_handle vB = c->vertex(eit->third);
-
- if
- (
- (
- vA->internalPoint() && !vA->referred()
- && vB->internalOrBoundaryPoint()
- )
- || (
- vB->internalPoint() && !vB->referred()
- && vA->internalOrBoundaryPoint()
- )
- )
- {
- pointFromPoint dVA = topoint(vA->point());
- pointFromPoint dVB = topoint(vB->point());
-
- Field<vector> alignmentDirsA
- (
- vA->alignment().T() & cartesianDirections
- );
- Field<vector> alignmentDirsB
- (
- vB->alignment().T() & cartesianDirections
- );
-
- Field<vector> alignmentDirs(3);
-
- forAll(alignmentDirsA, aA)
- {
- const vector& a = alignmentDirsA[aA];
-
- scalar maxDotProduct = 0.0;
-
- forAll(alignmentDirsB, aB)
- {
- const vector& b = alignmentDirsB[aB];
-
- const scalar dotProduct = a & b;
-
- if (mag(dotProduct) > maxDotProduct)
- {
- maxDotProduct = mag(dotProduct);
-
- alignmentDirs[aA] = a + sign(dotProduct)*b;
-
- alignmentDirs[aA] /= mag(alignmentDirs[aA]);
- }
- }
- }
-
- vector rAB = dVA - dVB;
-
- scalar rABMag = mag(rAB);
-
- if (rABMag < SMALL)
- {
- // Removal of close points
-
- if
- (
- vA->internalPoint() && !vA->referred()
- && vB->internalPoint() && !vB->referred()
- )
- {
- // Only insert a point at the midpoint of
- // the short edge if neither attached
- // point has already been identified to be
- // removed.
-
- if
- (
- pointToBeRetained[vA->index()] == true
- && pointToBeRetained[vB->index()] == true
- )
- {
- pointsToInsert.append
- (
- toPoint<Point>(0.5*(dVA + dVB))
- );
- }
- }
-
- if (vA->internalPoint() && !vA->referred())
- {
- pointToBeRetained[vA->index()] = false;
- }
-
- if (vB->internalPoint() && !vB->referred())
- {
- pointToBeRetained[vB->index()] = false;
- }
-
- // Do not consider this Delaunay edge any further
-
- continue;
- }
-
- forAll(alignmentDirs, aD)
- {
- vector& alignmentDir = alignmentDirs[aD];
-
- scalar dotProd = rAB & alignmentDir;
-
- if (dotProd < 0)
- {
- // swap the direction of the alignment so that has the
- // same sense as rAB
- alignmentDir *= -1;
- dotProd *= -1;
- }
-
- const scalar alignmentDotProd = dotProd/rABMag;
-
- if
- (
- alignmentDotProd
- > cvMeshControls().cosAlignmentAcceptanceAngle()
- )
- {
- scalar targetCellSize = averageCellSize(vA, vB);
-
- scalar targetFaceArea = sqr(targetCellSize);
-
- const vector originalAlignmentDir = alignmentDir;
-
- // Update cell size and face area
- cellShapeControls().aspectRatio().updateCellSizeAndFaceArea
- (
- alignmentDir,
- targetFaceArea,
- targetCellSize
- );
-
- // Vector to move end points around middle of vector
- // to align edge (i.e. dual face normal) with alignment
- // directions.
- vector delta = alignmentDir - 0.5*rAB;
-
- face dualFace = buildDualFace(eit);
-
-// Pout<< dualFace << endl;
-// Pout<< " " << vA->info() << endl;
-// Pout<< " " << vB->info() << endl;
-
- const scalar faceArea = dualFace.mag(dualVertices);
-
- // Update delta vector
- cellShapeControls().aspectRatio().updateDeltaVector
- (
- originalAlignmentDir,
- targetCellSize,
- rABMag,
- delta
- );
-
- if (targetFaceArea == 0)
- {
- Pout<< vA->info() << vB->info();
-
- Cell_handle ch = locate(vA->point());
- if (is_infinite(ch))
- {
- Pout<< "vA " << vA->targetCellSize() << endl;
- }
-
- ch = locate(vB->point());
- if (is_infinite(ch))
- {
- Pout<< "vB " << vB->targetCellSize() << endl;
- }
- }
-
- delta *= faceAreaWeightModel_->faceAreaWeight
- (
- faceArea/targetFaceArea
- );
-
- if
- (
- (
- (vA->internalPoint() && vB->internalPoint())
- && (!vA->referred() || !vB->referred())
-// ||
-// (
-// vA->referredInternalPoint()
-// && vB->referredInternalPoint()
-// )
- )
- && rABMag
- > cvMeshControls().insertionDistCoeff()*targetCellSize
- && faceArea
- > cvMeshControls().faceAreaRatioCoeff()*targetFaceArea
- && alignmentDotProd
- > cvMeshControls().cosInsertionAcceptanceAngle()
- )
- {
- // Point insertion
- if
- (
- !geometryToConformTo_.findSurfaceAnyIntersection
- (
- dVA,
- dVB
- )
- )
- {
- const Foam::point& newPt = 0.5*(dVA + dVB);
-
- if (positionOnThisProc(newPt))
- {
- // Prevent insertions spanning surfaces
- pointsToInsert.append(toPoint<Point>(newPt));
- }
- }
- }
- else if
- (
- (
- (vA->internalPoint() && !vA->referred())
- || (vB->internalPoint() && !vB->referred())
- )
- && rABMag
- < cvMeshControls().removalDistCoeff()
- *targetCellSize
- )
- {
- // Point removal
- if
- (
- vA->internalPoint() && !vA->referred()
- && vB->internalPoint() && !vB->referred()
- )
- {
- // Only insert a point at the midpoint of
- // the short edge if neither attached
- // point has already been identified to be
- // removed.
- if
- (
- pointToBeRetained[vA->index()] == true
- && pointToBeRetained[vB->index()] == true
- )
- {
- pointsToInsert.append
- (
- toPoint<Point>(0.5*(dVA + dVB))
- );
- }
- }
-
- if (vA->internalPoint() && !vA->referred())
- {
- pointToBeRetained[vA->index()] = false;
- }
-
- if (vB->internalPoint() && !vB->referred())
- {
- pointToBeRetained[vB->index()] = false;
- }
- }
- else
- {
- if (vA->internalPoint() && !vA->referred())
- {
- displacementAccumulator[vA->index()] += delta;
- }
-
- if (vB->internalPoint() && !vB->referred())
- {
- displacementAccumulator[vB->index()] -= delta;
- }
- }
- }
- }
- }
- }
-
- Info<< "Limit displacements" << endl;
-
- // Limit displacements that pierce, or get too close to the surface
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalPoint() && !vit->referred())
- {
- if (pointToBeRetained[vit->index()] == true)
- {
- limitDisplacement
- (
- vit,
- displacementAccumulator[vit->index()]
- );
- }
- }
- }
-
- vector totalDisp = gSum(displacementAccumulator);
- scalar totalDist = gSum(mag(displacementAccumulator));
-
- displacementAccumulator *= relaxation;
-
- Info<< "Sum displacements" << endl;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalPoint() && !vit->referred())
- {
- if (pointToBeRetained[vit->index()] == true)
- {
- // Convert vit->point() to FOAM vector (double) to do addition,
- // avoids memory increase because a record of the constructions
- // would be kept otherwise.
- // See cgal-discuss@lists-sop.inria.fr:
- // "Memory issue with openSUSE 11.3, exact kernel, adding
- // points/vectors"
- // 14/1/2011.
- // Only necessary if using an exact constructions kernel
- // (extended precision)
-
- pointsToInsert.append
- (
- toPoint<Point>
- (
- topoint(vit->point())
- + displacementAccumulator[vit->index()]
- )
- );
- }
- }
- }
-
- pointsToInsert.shrink();
-
- // Save displacements to file.
- if (cvMeshControls().objOutput() && runTime_.outputTime())
- {
- Pout<< "Writing point displacement vectors to file." << endl;
- OFstream str("displacements_" + runTime_.timeName() + ".obj");
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalPoint() && !vit->referred())
- {
- if (pointToBeRetained[vit->index()] == true)
- {
- meshTools::writeOBJ(str, topoint(vit->point()));
-
- str << "vn "
- << displacementAccumulator[vit->index()][0] << " "
- << displacementAccumulator[vit->index()][1] << " "
- << displacementAccumulator[vit->index()][2] << " "
- << endl;
- }
- }
- }
- }
-
- // Remove the entire tessellation
- DelaunayMesh<Delaunay>::reset();
-
- timeCheck("Displacement calculated");
-
- Info<< nl << "Inserting displaced tessellation" << endl;
-
- insertInternalPoints(pointsToInsert, true);
-
- reinsertFeaturePoints(true);
-
- // Remove internal points that have been inserted outside the surface.
-// label internalPtIsOutside = 0;
-//
-// for
-// (
-// Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
-// vit != finite_vertices_end();
-// ++vit
-// )
-// {
-// if (vit->internalPoint() && !vit->referred())
-// {
-// bool inside = geometryToConformTo_.inside
-// (
-// topoint(vit->point())
-// );
-//
-// if (!inside)
-// {
-// remove(vit);
-// internalPtIsOutside++;
-// }
-// }
-// }
-//
-// Info<< " " << internalPtIsOutside
-// << " internal points were inserted outside the domain. "
-// << "They have been removed." << endl;
-
- // Fix points that have not been significantly displaced
-// for
-// (
-// Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
-// vit != finite_vertices_end();
-// ++vit
-// )
-// {
-// if (vit->internalPoint())
-// {
-// if
-// (
-// mag(displacementAccumulator[vit->index()])
-// < 0.1*targetCellSize(topoint(vit->point()))
-// )
-// {
-// vit->setVertexFixed();
-// }
-// }
-// }
-
- timeCheck("Internal points inserted");
-
- {
- // Check that no index is shared between any of the local points
- labelHashSet usedIndices;
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (!vit->referred() && !usedIndices.insert(vit->index()))
- {
- FatalErrorIn("Foam::conformalVoronoiMesh::move()")
- << "Index already used! Could not insert: " << nl
- << vit->info()
- << abort(FatalError);
- }
- }
- }
-
- conformToSurface();
-
- if (cvMeshControls().objOutput())
- {
- writePoints
- (
- "internalPoints_" + runTime_.timeName() + ".obj",
- Foam::indexedVertexEnum::vtInternal
- );
- }
-
- if (cvMeshControls().objOutput() && runTime_.outputTime())
- {
- writeBoundaryPoints("boundaryPoints_" + runTime_.timeName() + ".obj");
- }
-
- timeCheck("After conformToSurface");
-
- printVertexInfo();
-
- // Write the intermediate mesh, do not filter the dual faces.
- if (runTime_.outputTime())
- {
- writeMesh(runTime_.timeName());
- }
-
- updateSizesAndAlignments(pointsToInsert);
-
- Info<< nl
- << "Total displacement = " << totalDisp << nl
- << "Total distance = " << totalDist << nl
- << endl;
-}
-
-
-bool Foam::conformalVoronoiMesh::positionOnThisProc
-(
- const Foam::point& pt
-) const
-{
- if (Pstream::parRun())
- {
- return decomposition_().positionOnThisProcessor(pt);
- }
-
- return true;
-}
-
-
-Foam::boolList Foam::conformalVoronoiMesh::positionOnThisProc
-(
- const Foam::List<Foam::point>& pts
-) const
-{
- if (Pstream::parRun())
- {
- return decomposition_().positionOnThisProcessor(pts);
- }
-
- return boolList(pts.size(), true);
-}
-
-
-Foam::labelList Foam::conformalVoronoiMesh::positionProc
-(
- const Foam::List<Foam::point>& pts
-) const
-{
- if (!Pstream::parRun())
- {
- return labelList(pts.size(), -1);
- }
-
- return decomposition_().processorPosition(pts);
-}
-
-
-Foam::List<Foam::List<Foam::pointIndexHit> >
-Foam::conformalVoronoiMesh::intersectsProc
-(
- const List<Foam::point>& starts,
- const List<Foam::point>& ends
-) const
-{
- if (!Pstream::parRun())
- {
- return List<List<pointIndexHit> >(starts.size());
- }
-
- return decomposition_().intersectsProcessors(starts, ends, false);
-}
-
-
-//Foam::labelListList Foam::conformalVoronoiMesh::overlapsProc
-//(
-// const List<Foam::point>& centres,
-// const List<scalar>& radiusSqrs
-//) const
-//{
-// if (!Pstream::parRun())
-// {
-// return labelListList(centres.size(), labelList(0));
-// }
-//
-//// DynamicList<Foam::point> pts(number_of_vertices());
-//
-//// for
-//// (
-//// Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
-//// vit != finite_vertices_end();
-//// vit++
-//// )
-//// {
-//// pts.append(topoint(vit->point()));
-//// }
-////
-//// dynamicIndexedOctree<dynamicTreeDataPoint> vertexOctree
-//// (
-//// dynamicTreeDataPoint(pts),
-//// treeBoundBox(min(pts), max(pts)),
-//// 10, // maxLevel
-//// 10, // leafSize
-//// 3.0 // duplicity
-//// );
-//
-// return decomposition_().overlapsProcessors
-// (
-// centres,
-// radiusSqrs,
-// *this,
-// false//,
-//// vertexOctree
-// );
-//}
-
-
-void Foam::conformalVoronoiMesh::checkCoPlanarCells() const
-{
- typedef CGAL::Exact_predicates_exact_constructions_kernel Kexact;
- typedef CGAL::Point_3<Kexact> PointExact;
-
- if (!is_valid())
- {
- Pout<< "Triangulation is invalid!" << endl;
- }
-
- OFstream str("badCells.obj");
-
- label badCells = 0;
-
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- const scalar quality = cvMeshChecks::coplanarTet(cit, 1e-16);
-
- if (quality == 0)
- {
- Pout<< "COPLANAR: " << cit->info() << nl
- << " quality = " << quality << nl
- << " dual = " << topoint(cit->dual()) << endl;
-
- drawDelaunayCell(str, cit, badCells++);
-
- FixedList<PointExact, 4> cellVerticesExact(PointExact(0,0,0));
- forAll(cellVerticesExact, vI)
- {
- cellVerticesExact[vI] = PointExact
- (
- cit->vertex(vI)->point().x(),
- cit->vertex(vI)->point().y(),
- cit->vertex(vI)->point().z()
- );
- }
-
- PointExact synchronisedDual = CGAL::circumcenter<Kexact>
- (
- cellVerticesExact[0],
- cellVerticesExact[1],
- cellVerticesExact[2],
- cellVerticesExact[3]
- );
-
- Foam::point exactPt
- (
- CGAL::to_double(synchronisedDual.x()),
- CGAL::to_double(synchronisedDual.y()),
- CGAL::to_double(synchronisedDual.z())
- );
-
- Info<< "inexact = " << cit->dual() << nl
- << "exact = " << exactPt << endl;
- }
- }
-
- Pout<< "There are " << badCells << " bad cells out of "
- << number_of_finite_cells() << endl;
-
-
- label nNonGabriel = 0;
- for
- (
- Delaunay::Finite_facets_iterator fit = finite_facets_begin();
- fit != finite_facets_end();
- ++fit
- )
- {
- if (!is_Gabriel(*fit))
- {
- nNonGabriel++;//Pout<< "Non-gabriel face" << endl;
- }
- }
-
- Pout<< "There are " << nNonGabriel << " non-Gabriel faces out of "
- << number_of_finite_facets() << endl;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMesh.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMesh.H
deleted file mode 100644
index 912a426dd1e5a55b6f367062233e48709f31ee23..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMesh.H
+++ /dev/null
@@ -1,1197 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::conformalVoronoiMesh
-
-Description
-
-SourceFiles
- conformalVoronoiMeshI.H
- conformalVoronoiMesh.C
- conformalVoronoiMeshIO.C
- conformalVoronoiMeshConformToSurface.C
- conformalVoronoiMeshFeaturePoints.C
- conformalVoronoiMeshFeaturePointSpecialisations.C
- conformalVoronoiMeshCalcDualMesh.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef conformalVoronoiMesh_H
-#define conformalVoronoiMesh_H
-
-#include "CGALTriangulation3Ddefs.H"
-#include "uint.H"
-#include "ulong.H"
-#include "searchableSurfaces.H"
-#include "conformationSurfaces.H"
-#include "cellShapeControl.H"
-#include "cvControls.H"
-#include "DynamicList.H"
-#include "PackedBoolList.H"
-#include "Time.H"
-#include "polyMesh.H"
-#include "plane.H"
-#include "SortableList.H"
-#include "meshTools.H"
-#include "dynamicIndexedOctree.H"
-#include "dynamicTreeDataPoint.H"
-#include "indexedOctree.H"
-#include "treeDataPoint.H"
-#include "unitConversion.H"
-#include "transform.H"
-#include "volFields.H"
-#include "fvMesh.H"
-#include "labelPair.H"
-#include "HashSet.H"
-#include "memInfo.H"
-#include "point.H"
-#include "cellSet.H"
-#include "wallPolyPatch.H"
-#include "processorPolyPatch.H"
-#include "zeroGradientFvPatchFields.H"
-#include "globalIndex.H"
-#include "pointFeatureEdgesTypes.H"
-#include "pointConversion.H"
-#include "Tuple2.H"
-#include "DistributedDelaunayMesh.H"
-#include "tensorIOField.H"
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// Forward declaration of classes
-class initialPointsMethod;
-
-class relaxationModel;
-
-class faceAreaWeightModel;
-
-class backgroundMeshDecomposition;
-
-/*---------------------------------------------------------------------------*\
- Class conformalVoronoiMesh Declaration
-\*---------------------------------------------------------------------------*/
-
-class conformalVoronoiMesh
-:
- public DistributedDelaunayMesh<Delaunay>
-{
-public:
-
- enum reconformationMode
- {
- rmOff, // Do not rebuild the surface conformation
- rmOn
- };
-
- typedef Delaunay::Vertex_handle Vertex_handle;
- typedef Delaunay::Cell_handle Cell_handle;
- typedef Delaunay::Point Point;
-
- typedef List<DynamicList<Pair<labelPair> > > labelPairPairDynListList;
-
- typedef Tuple2<pointIndexHit, label> pointIndexHitAndFeature;
- typedef List<pointIndexHitAndFeature> pointIndexHitAndFeatureList;
- typedef DynamicList<pointIndexHitAndFeature> pointIndexHitAndFeatureDynList;
-
-
-private:
-
- // Static data
-
- static const scalar tolParallel;
-
- static const scalar searchConeAngle;
-
- static const scalar searchAngleOppositeSurface;
-
-
- // Private data
-
- //- The time registry of the application
- const Time& runTime_;
-
- //- Random number generator
- mutable Random rndGen_;
-
- //- Controls for the conformal Voronoi meshing process
- cvControls cvMeshControls_;
-
- //- All geometry of the meshing process, including surfaces to be
- // conformed to and those to be used for refinement
- searchableSurfaces allGeometry_;
-
- //- The surfaces to conform to
- conformationSurfaces geometryToConformTo_;
-
- //- The cell shape control object
- cellShapeControl cellShapeControl_;
-
- //- Limiting bound box before infinity begins
- treeBoundBox limitBounds_;
-
- //- Store the feature constraining points to be reinserted after a
- // triangulation clear. Maintained with relative types and indices.
- List<Vb> featureVertices_;
-
- //- Storing the locations of all of the features to be conformed to.
- // Single pointField required by the featurePointTree.
- pointField featurePointLocations_;
-
- //- Search tree for edge point locations
- mutable autoPtr<dynamicIndexedOctree<dynamicTreeDataPoint> >
- edgeLocationTreePtr_;
-
- mutable DynamicList<Foam::point> existingEdgeLocations_;
-
- //- Search tree for surface point locations
- mutable autoPtr<dynamicIndexedOctree<dynamicTreeDataPoint> >
- surfacePtLocationTreePtr_;
-
- mutable DynamicList<Foam::point> existingSurfacePtLocations_;
-
- //- Store locations where the cell size and alignments will be
- // pre-calculated and looked up
- pointField sizeAndAlignmentLocations_;
-
- //- Stored cell size at sizeAndAlignmentLocations_
- scalarField storedSizes_;
-
- //- Stored alignments at sizeAndAlignmentLocations_
- tensorField storedAlignments_;
-
- //- Search tree for size and alignment lookup points
- mutable autoPtr<indexedOctree<treeDataPoint> > sizeAndAlignmentTreePtr_;
-
- //- Store the surface and feature edge conformation locations to be
- // reinserted
- List<Vb> surfaceConformationVertices_;
-
- //- Method for inserting initial points. Runtime selectable.
- autoPtr<initialPointsMethod> initialPointsMethod_;
-
- //- Relaxation coefficient model. Runtime selectable.
- autoPtr<relaxationModel> relaxationModel_;
-
- //- Face area weight function. Runtime selectable.
- autoPtr<faceAreaWeightModel> faceAreaWeightModel_;
-
- //- Background mesh decomposition, only available in parallel.
- autoPtr<backgroundMeshDecomposition> decomposition_;
-
-
- // Private Member Functions
-
- inline scalar defaultCellSize() const;
-
- //- Return the local target cell size at the given location. Takes
- // boolean argument to allow speed-up of queries if the point is going
- // to be on a surface.
- inline scalar targetCellSize(const Foam::point& pt) const;
-
- //- Return the target cell size from that stored on a pair of
- // Delaunay vertices, using a mean function.
- inline scalar averageCellSize
- (
- const Vertex_handle& vA,
- const Vertex_handle& vB
- ) const;
-
- //- Return the target cell size from that stored on a pair of
- // Delaunay vertices, including the possibility that one of
- // them is not an internalOrBoundaryPoint, and so will not
- // have valid data.
- inline scalar averageAnyCellSize
- (
- const Vertex_handle& vA,
- const Vertex_handle& vB
- ) const;
-
- //- The average target cell size of a Delaunay facet, i.e., of
- // a dual edge
- inline scalar averageAnyCellSize
- (
- const Delaunay::Finite_facets_iterator& fit
- ) const;
-
- //- Return the local point pair separation at the given location
- inline scalar pointPairDistance(const Foam::point& pt) const;
-
- //- Return the local mixed feature point placement distance
- inline scalar mixedFeaturePointDistance(const Foam::point& pt) const;
-
- //- Return the square of the local feature point exclusion distance
- inline scalar featurePointExclusionDistanceSqr
- (
- const Foam::point& pt
- ) const;
-
- //- Return the square of the local feature edge exclusion distance
- inline scalar featureEdgeExclusionDistanceSqr
- (
- const Foam::point& pt
- ) const;
-
- //- Return the square of the local surface point exclusion distance
- inline scalar surfacePtExclusionDistanceSqr
- (
- const Foam::point& pt
- ) const;
-
- //- Return the square of the local surface search distance
- inline scalar surfaceSearchDistanceSqr(const Foam::point& pt) const;
-
- //- Return the local maximum surface protrusion distance
- inline scalar maxSurfaceProtrusion(const Foam::point& pt) const;
-
- //- Return the required cell size at the given location
- scalar requiredSize(const Foam::point& pt) const;
-
- //- Return the required alignment directions at the given location
- tensor requiredAlignment(const Foam::point& pt) const;
-
- //- Insert Point and return its auto-generated index
- inline bool insertPoint
- (
- const Point& P,
- const indexedVertexEnum::vertexType type
- );
-
- //- Insert Foam::point with specified index and type
- inline bool insertPoint
- (
- const Foam::point& p,
- const indexedVertexEnum::vertexType type
- );
-
- //- Insert Point with specified index, type and original processor
- inline bool insertReferredPoint
- (
- const Point& P,
- const label index,
- const indexedVertexEnum::vertexType type,
- const label processor
- );
-
- inline bool insertReferredPoint(const Vb& P);
-
- //- Insert Foam::point with specified index, type and original processor
- inline bool insertReferredPoint
- (
- const Foam::point& p,
- const label index,
- const indexedVertexEnum::vertexType type,
- const label processor
- );
-
- //- Insert Delaunay vertices using the CGAL range insertion method,
- // optionally check processor occupancy and distribute to other
- // processors
- void insertInternalPoints
- (
- List<Point>& points,
- const bool distribute = false
- );
-
- void insertPoints
- (
- List<Vb>& vertices,
- bool distribute = true
- );
-
- //- Create a point-pair at a ppDist distance either side of
- // surface point surfPt, in the direction n
- inline void createPointPair
- (
- const scalar ppDist,
- const Foam::point& surfPt,
- const vector& n,
- DynamicList<Vb>& pts
- );
-
- inline Foam::point perturbPoint(const Foam::point& pt) const;
-
- //- Create a point-pair at a ppDist distance either side of
- // surface point surfPt, in the direction n
- inline void createBafflePointPair
- (
- const scalar ppDist,
- const Foam::point& surfPt,
- const vector& n,
- DynamicList<Vb>& pts
- );
-
- inline bool isPointPair
- (
- const Vertex_handle& vA,
- const Vertex_handle& vB
- ) const;
-
- //- Insert pairs of points on the surface with the given normals, at the
- // specified spacing
- void insertSurfacePointPairs
- (
- const pointIndexHitAndFeatureList& surfaceHits,
- const fileName fName = fileName::null
- );
-
- //- Insert groups of points to conform to an edge given a list of
- // pointIndexHits specifying the location and edge index of the point
- // to be conformed to on the corresponding entry in featureHit
- void insertEdgePointGroups
- (
- const pointIndexHitAndFeatureList& edgeHits,
- const fileName fName = fileName::null
- );
-
- //- Call the appropriate function to conform to an edge
- void createEdgePointGroup
- (
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
- );
-
- //- Create points to conform to an external edge
- void createExternalEdgePointGroup
- (
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
- );
-
- //- Create points to conform to an internal edge
- void createInternalEdgePointGroup
- (
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
- );
-
- //- Create points to conform to a flat edge
- void createFlatEdgePointGroup
- (
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
- );
-
- //- Create points to conform to an open edge
- void createOpenEdgePointGroup
- (
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
- );
-
- //- Create points to conform to multiply connected edge
- void createMultipleEdgePointGroup
- (
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
- );
-
- //- Determine and insert point groups at the feature points
- void insertFeaturePoints();
-
- //- Create point groups at mixed feature points
- void createMixedFeaturePoints(DynamicList<Vb>& pts);
-
- void addMasterAndSlavePoints
- (
- const DynamicList<Foam::point>& masterPoints,
- const DynamicList<indexedVertexEnum::vertexType>&masterPointsTypes,
- const Map<DynamicList<autoPtr<plane> > >& masterPointReflections,
- DynamicList<Vb>& pts,
- const label ptI
- ) const;
-
- label getSign(const extendedFeatureEdgeMesh::edgeStatus eStatus) const;
-
- void createMasterAndSlavePoints
- (
- const extendedFeatureEdgeMesh& feMesh,
- const label ptI,
- DynamicList<Vb>& pts
- ) const;
-
- void createFeaturePoints(DynamicList<Vb>& pts);
-
- vector sharedFaceNormal
- (
- const extendedFeatureEdgeMesh& feMesh,
- const label edgeI,
- const label nextEdgeI
- ) const;
-
- List<Foam::point> reflectPointInPlanes
- (
- const Foam::point p,
- const DynamicList<autoPtr<plane> >& planes
- ) const;
-
- Foam::point reflectPointInPlane
- (
- const Foam::point p,
- const plane& planeN
- ) const;
-
-
- //- Fill the pointFeatureEdgesType struct with the types of feature
- // edges that are attached to the point.
- List<extendedFeatureEdgeMesh::edgeStatus> calcPointFeatureEdgesTypes
- (
- const extendedFeatureEdgeMesh& feMesh,
- const labelList& pEds,
- pointFeatureEdgesTypes& pFEdgeTypes
- );
-
- //- Create feature point groups if a specialisation exists for the
- // structure
- bool createSpecialisedFeaturePoint
- (
- const extendedFeatureEdgeMesh& feMesh,
- const labelList& pEds,
- const pointFeatureEdgesTypes& pFEdgeTypes,
- const List<extendedFeatureEdgeMesh::edgeStatus>& allEdStat,
- const label ptI,
- DynamicList<Vb>& pts
- );
-
- //- Store the locations of all of the features to be conformed to
- void constructFeaturePointLocations();
-
- List<pointIndexHit> findSurfacePtLocationsNearFeaturePoint
- (
- const Foam::point& featurePoint
- ) const;
-
- //- Reinsert stored feature point defining points
- void reinsertFeaturePoints(bool distribute = false);
-
- //- Check if a location is in exclusion range around a feature point
- bool nearFeaturePt(const Foam::point& pt) const;
-
- //- Insert the initial points into the triangulation, based on the
- // initialPointsMethod
- void insertInitialPoints();
-
- //- Calculate the worst load balance
- scalar calculateLoadUnbalance() const;
-
- //- In parallel redistribute the backgroundMeshDecomposition and
- // vertices to balance the number of vertices on each processor.
- // Returns true if the background mesh changes as this removes all
- // referred vertices, so the parallel interface may need rebuilt.
- bool distributeBackground();
-
- // Test for full containment
- void cellSizeMeshOverlapsBackground() const;
-
- //-
- void distribute();
-
- void buildCellSizeAndAlignmentMesh();
-
- //- Store data for sizeAndAlignmentLocations_, storedSizes_ and
- // storedAlignments_ and initialise the sizeAndAlignmentTreePtr_,
- // determining the appropriate sizeAndAlignmentLocations_
- // automatically
- void storeSizesAndAlignments();
-
- //- Store data for sizeAndAlignmentLocations_, storedSizes_ and
- // storedAlignments_ and initialise the sizeAndAlignmentTreePtr_
- void storeSizesAndAlignments(const List<Point>& storePts);
-
- //- Restore the sizes and alignments if required
- void updateSizesAndAlignments(const List<Point>& storePts);
-
- //- Demand driven construction of octree for and alignment points
- const indexedOctree<treeDataPoint>& sizeAndAlignmentTree() const;
-
- //- Set the size and alignment data for each vertex
- void setVertexSizeAndAlignment();
-
- //- Builds a dual face by circulating around the supplied edge.
- face buildDualFace
- (
- const Delaunay::Finite_edges_iterator& eit
- ) const;
-
- boolList dualFaceBoundaryPoints
- (
- const Delaunay::Finite_edges_iterator& eit
- ) const;
-
- //- Finds the maximum filterCount of the dual vertices
- // (Delaunay cells) that form the dual face produced by the
- // supplied edge
- label maxFilterCount
- (
- const Delaunay::Finite_edges_iterator& eit
- ) const;
-
- //- Determines the owner and neighbour labels for dual cells
- // corresponding to the dual face formed by the supplied
- // Delaunay vertices. If the dual face is a boundary face
- // then neighbour = -1. Returns true if the dual face
- // created by vA -> vB needs to be reversed to be correctly
- // orientated.
- bool ownerAndNeighbour
- (
- Vertex_handle vA,
- Vertex_handle vB,
- label& owner,
- label& neighbour
- ) const;
-
- //- Insert the necessary point pairs to conform to the surface, either
- // from stored results, or trigger a re-conformation
- void conformToSurface();
-
- //- Decision making function for when to rebuild the surface
- // conformation
- reconformationMode reconformationControl() const;
-
- //- Determines geometrically whether a vertex is close to a surface
- // This is an optimisation
- label findVerticesNearBoundaries();
-
- //- Create and insert the necessary point pairs to conform to the
- // surface, then store the result
- void buildSurfaceConformation();
-
- label synchroniseEdgeTrees
- (
- pointIndexHitAndFeatureList& featureEdgeHits
- );
-
- label synchroniseSurfaceTrees
- (
- pointIndexHitAndFeatureList& surfaceHits
- );
-
- bool locationConformsToInside
- (
- const pointIndexHitAndFeature& info
- ) const;
-
- //- Check to see if dual cell specified by given vertex iterator
- // intersects the boundary and hence reqires a point-pair
- bool dualCellSurfaceAnyIntersection
- (
- const Delaunay::Finite_vertices_iterator& vit
- ) const;
-
- //- Return all intersections
- bool dualCellSurfaceAllIntersections
- (
- const Delaunay::Finite_vertices_iterator& vit,
- pointIndexHitAndFeatureDynList& info
- ) const;
-
- //- Return false if the line is entirely outside the current processor
- // domain, true is either point is inside, or the processor domain
- // bounadry is intersected (i.e. the points are box outside but the
- // line cuts. The points will be moved onto the box where they
- // intersect.
- bool clipLineToProc
- (
- const Foam::point& pt,
- Foam::point& a,
- Foam::point& b
- ) const;
-
- //- Find the "worst" protrusion of a dual cell through the surface,
- // subject to the maxSurfaceProtrusion tolerance
- void dualCellLargestSurfaceProtrusion
- (
- const Delaunay::Finite_vertices_iterator& vit,
- pointIndexHit& surfHit,
- label& hitSurface
- ) const;
-
- //- Find the "worst" incursion of the dual cell of a non-internal or
- // boundary point through the surface, subject to the
- // maxSurfaceProtrusion tolerance
- void dualCellLargestSurfaceIncursion
- (
- const Delaunay::Finite_vertices_iterator& vit,
- pointIndexHit& surfHitLargest,
- label& hitSurfaceLargest
- ) const;
-
- //- Write out vertex-processor occupancy information for debugging
- void reportProcessorOccupancy();
-
- //- Write out debugging information about the surface conformation
- // quality
-// void reportSurfaceConformationQuality();
-
- //- Limit the displacement of a point so that it doesn't penetrate the
- // surface to be meshed or come too close to it
- void limitDisplacement
- (
- const Delaunay::Finite_vertices_iterator& vit,
- vector& displacement,
- label callCount = 0
- ) const;
-
- //- Find angle between the normals of two close surface points.
- scalar angleBetweenSurfacePoints(Foam::point pA, Foam::point pB) const;
-
- //- Check if a surface point is near another.
- bool nearSurfacePoint
- (
- pointIndexHitAndFeature& pHit
- ) const;
-
- //- Append a point to the surface point tree and the existing list
- bool appendToSurfacePtTree
- (
- const Foam::point& pt
- ) const;
-
- //- Append a point to the edge location tree and the existing list
- bool appendToEdgeLocationTree
- (
- const Foam::point& pt
- ) const;
-
- //- Return a list of the nearest feature edge locations
- List<pointIndexHit> nearestFeatureEdgeLocations
- (
- const Foam::point& pt
- ) const;
-
- //- Check if a point is near any feature edge points.
- bool pointIsNearFeatureEdgeLocation(const Foam::point& pt) const;
-
- bool pointIsNearFeatureEdgeLocation
- (
- const Foam::point& pt,
- pointIndexHit& info
- ) const;
-
- //- Check if a point is near any surface conformation points.
- bool pointIsNearSurfaceLocation(const Foam::point& pt) const;
-
- bool pointIsNearSurfaceLocation
- (
- const Foam::point& pt,
- pointIndexHit& info
- ) const;
-
- //- Check if a location is in the exclusion range of an existing feature
- //- edge conformation location
- bool nearFeatureEdgeLocation
- (
- pointIndexHit& pHit
- ) const;
-
- //- Build or rebuild the edge location tree
- void buildEdgeLocationTree
- (
- const DynamicList<Foam::point>& existingEdgeLocations
- ) const;
-
- //- Build or rebuild the surface point location tree
- void buildSurfacePtLocationTree
- (
- const DynamicList<Foam::point>& existingSurfacePtLocations
- ) const;
-
- //- Build or rebuild the sizeAndAlignmentTree
- void buildSizeAndAlignmentTree() const;
-
- //- Process the surface conformation locations to decide which surface
- // and edge conformation locations to add
- void addSurfaceAndEdgeHits
- (
- const Delaunay::Finite_vertices_iterator& vit,
- const pointIndexHitAndFeatureDynList& surfaceIntersections,
- scalar surfacePtReplaceDistCoeffSqr,
- scalar edgeSearchDistCoeffSqr,
- pointIndexHitAndFeatureDynList& surfaceHits,
- pointIndexHitAndFeatureDynList& featureEdgeHits
- ) const;
-
- //- Store the surface conformation with the indices offset to be
- // relative to zero
- void storeSurfaceConformation();
-
- //- Reinsert the surface conformation re-offsetting indices to be
- // relative to new number of internal vertices
- void reinsertSurfaceConformation();
-
- void checkCells();
-
- void checkDuals();
-
- void checkVertices();
-
- void checkCoPlanarCells() const;
-
- //- Dual calculation
- void calcDualMesh
- (
- pointField& points,
- labelList& boundaryPts,
- faceList& faces,
- labelList& owner,
- labelList& neighbour,
- wordList& patchTypes,
- wordList& patchNames,
- labelList& patchSizes,
- labelList& patchStarts,
- labelList& procNeighbours,
- pointField& cellCentres,
- labelList& cellToDelaunayVertex,
- labelListList& patchToDelaunayVertex,
- PackedBoolList& boundaryFacesToRemove
- );
-
- //- Tet mesh calculation
- void calcTetMesh
- (
- pointField& points,
- labelList& pointToDelaunayVertex,
- faceList& faces,
- labelList& owner,
- labelList& neighbour,
- wordList& patchTypes,
- wordList& patchNames,
- labelList& patchSizes,
- labelList& patchStarts
- );
-
- //- Determines if the dual face constructed by the Delaunay
- // edge is a boundary face
- inline bool isBoundaryDualFace
- (
- const Delaunay::Finite_edges_iterator& eit
- ) const;
-
- //- Which processors are attached to the dual edge represented by this
- // Delaunay facet
- inline List<label> processorsAttached
- (
- const Delaunay::Finite_facets_iterator& fit
- ) const;
-
- //- Determines if the edge constructed from the face is on
- // a processor patch
- inline bool isParallelDualEdge
- (
- const Delaunay::Finite_facets_iterator& fit
- ) const;
-
- //- Determines if the dual face constructed by the Delaunay
- // edge is a processor boundary face
- inline bool isProcBoundaryEdge
- (
- const Delaunay::Finite_edges_iterator& eit
- ) const;
-
- //- Merge vertices that are identical
- void mergeIdenticalDualVertices
- (
- const pointField& pts,
- const labelList& boundaryPts
- );
-
- label mergeIdenticalDualVertices
- (
- const pointField& pts,
- const labelList& boundaryPts,
- Map<label>& dualPtIndexMap
- ) const;
-
- //- Identify the face labels of the deferred collapse faces
- void deferredCollapseFaceSet
- (
- labelList& owner,
- labelList& neighbour,
- const HashSet<labelPair, labelPair::Hash<> >& deferredCollapseFaces
- ) const;
-
- //- Check whether the cell sizes are fine enough. Creates a polyMesh.
- void checkCellSizing();
-
- //- Find all cells with a patch face that is not near the surface. The
- // allowed offset is the fraction of the target cell size.
- labelHashSet findOffsetPatchFaces
- (
- const polyMesh& mesh,
- const scalar allowedOffset
- ) const;
-
- //- Create a polyMesh and check its quality, reports which
- // elements damage the mesh quality, allowing backtracking.
- labelHashSet checkPolyMeshQuality(const pointField& pts) const;
-
- //- Index all of the the Delaunay cells and calculate their
- //- dual points
- void indexDualVertices
- (
- pointField& pts,
- labelList& boundaryPts
- );
-
- //- Re-index all of the Delaunay cells
- void reindexDualVertices(const Map<label>& dualPtIndexMap);
-
- label createPatchInfo
- (
- wordList& patchNames,
- wordList& patchTypes,
- labelList& procNeighbours
- ) const;
-
- //- Create all of the internal and boundary faces
- void createFacesOwnerNeighbourAndPatches
- (
- faceList& faces,
- labelList& owner,
- labelList& neighbour,
- wordList& patchTypes,
- wordList& patchNames,
- labelList& patchSizes,
- labelList& patchStarts,
- labelList& procNeighbours,
- labelListList& patchPointPairSlaves,
- PackedBoolList& boundaryFacesToRemove,
- bool includeEmptyPatches = false
- ) const;
-
- //- Create the cell centres to use for the mesh
- void createCellCentres(pointField& cellCentres) const;
-
- //- Extract all points in vertex-index order
- tmp<pointField> allPoints() const;
-
- //- Sort the faces, owner and neighbour lists into
- // upper-triangular order. For internal faces only, use
- // before adding patch faces
- void sortFaces
- (
- faceList& faces,
- labelList& owner,
- labelList& neighbour
- ) const;
-
- //- Sort the processor patches so that the faces are in the same order
- // on both processors
- void sortProcPatches
- (
- List<DynamicList<face> >& patchFaces,
- List<DynamicList<label> >& patchOwners,
- List<DynamicList<label> >& patchPointPairSlaves,
- labelPairPairDynListList& patchSortingIndices
- ) const;
-
- //- Add the faces and owner information for the patches
- void addPatches
- (
- const label nInternalFaces,
- faceList& faces,
- labelList& owner,
- labelList& patchSizes,
- labelList& patchStarts,
- PackedBoolList& boundaryFacesToRemove,
- const List<DynamicList<face> >& patchFaces,
- const List<DynamicList<label> >& patchOwners,
- const List<DynamicList<bool> >& indirectPatchFace
- ) const;
-
- //- Remove points that are no longer used by any faces
- void removeUnusedPoints
- (
- faceList& faces,
- pointField& pts,
- labelList& boundaryPts
- ) const;
-
- //- Remove dual cells that are not used by any faces. Return compaction
- // map.
- labelList removeUnusedCells
- (
- labelList& owner,
- labelList& neighbour
- ) const;
-
- //- Create an empty fvMesh
- autoPtr<fvMesh> createDummyMesh
- (
- const IOobject& io,
- const wordList& patchTypes,
- const wordList& patchNames,
- const labelList& patchSizes,
- const labelList& patchStarts,
- const labelList& procNeighbours
- ) const;
-
- //- Create a polyMesh from points.
- autoPtr<polyMesh> createPolyMeshFromPoints(const pointField& pts) const;
-
- void checkProcessorPatchesMatch
- (
- const wordList& patchTypes,
- const labelList& patchSizes,
- const labelList& procNeighbours
- ) const;
-
- void reorderPoints
- (
- pointField& points,
- labelList& boundaryPts,
- faceList& faces,
- const label nInternalFaces
- ) const;
-
- //- Rotate the faces on processor patches if necessary
- void reorderProcessorPatches
- (
- const word& meshName,
- const fileName& instance,
- const pointField& points,
- faceList& faces,
- const wordList& patchTypes,
- const wordList& patchNames,
- const labelList& patchSizes,
- const labelList& patchStarts,
- const labelList& procNeighbours
- ) const;
-
- //- Disallow default bitwise copy construct
- conformalVoronoiMesh(const conformalVoronoiMesh&);
-
- //- Disallow default bitwise assignment
- void operator=(const conformalVoronoiMesh&);
-
-
-public:
-
- //- Runtime type information
- ClassName("conformalVoronoiMesh");
-
-
- // Constructors
-
- //- Construct from Time and cvMeshDict
- conformalVoronoiMesh
- (
- const Time& runTime,
- const dictionary& cvMeshDict
- );
-
-
- //- Destructor
- ~conformalVoronoiMesh();
-
-
- // Member Functions
-
- //- Move the vertices according to the controller, re-conforming to the
- // surface as required
- void move();
-
- void printVertexInfo() const;
-
- //- Check if the point is in the domain handled by this processor
- bool positionOnThisProc(const Foam::point& pt) const;
-
- //- Check if the point is in the domain handled by this processor
- boolList positionOnThisProc(const Foam::List<Foam::point>& pts) const;
-
- //- Which processor's domain handles this point
- labelList positionProc(const Foam::List<Foam::point>& pts) const;
-
- //- Which other processors does each line segment intersect
- List<List<pointIndexHit> > intersectsProc
- (
- const List<Foam::point>& starts,
- const List<Foam::point>& ends
- ) const;
-
-// //- Which other processors does each sphere overlap
-// labelListList overlapsProc
-// (
-// const List<Foam::point>& centres,
-// const List<scalar>& radiusSqrs
-// ) const;
-
- typedef K::Vector_3 CGALVector;
-
- inline CGALVector toCGALVector(const Foam::vector& v) const;
-
-
- // Access
-
- //- Return the Time object
- inline const Time& time() const;
-
- //- Return the random number generator
- inline Random& rndGen() const;
-
- //- Return the allGeometry object
- inline const searchableSurfaces& allGeometry() const;
-
- //- Return the conformationSurfaces object
- inline const conformationSurfaces& geometryToConformTo() const;
-
- //- Return the backgroundMeshDecomposition
- inline const backgroundMeshDecomposition& decomposition() const;
-
- //- Return the cellShapeControl object
- inline const cellShapeControl& cellShapeControls() const;
-
- //- Return the cvMeshControls object
- inline const cvControls& cvMeshControls() const;
-
-
- // Write
-
- //- Write the elapsedCpuTime and memory usage, with an optional
- // description
- void timeCheck
- (
- const string& description = string::null
- ) const;
-
- //- Write the Delaunay cell
- void drawDelaunayCell
- (
- Ostream& os,
- const Cell_handle& c,
- label offset = 0
- ) const;
-
- //- Write Delaunay points in the range between (and including)
- // type startPointType and endPointType to .obj file
- void writePoints
- (
- const fileName& fName,
- const Foam::indexedVertexEnum::vertexType startPointType,
- const Foam::indexedVertexEnum::vertexType endPointType
- ) const;
-
- //- Write Delaunay points of type pointType to .obj file
- void writePoints
- (
- const fileName& fName,
- const Foam::indexedVertexEnum::vertexType pointType
- ) const;
-
- //- Write the boundary Delaunay points to .obj file
- void writeBoundaryPoints(const fileName& fName) const;
-
- //- Write list of points to file
- void writePoints
- (
- const fileName& fName,
- const List<Foam::point>& points
- ) const;
-
- //- Write list of points to file
- void writePoints
- (
- const fileName& fName,
- const List<Vb>& points
- ) const;
-
- //- Write the internal Delaunay vertices of the tessellation as a
- // pointField that may be used to restart the meshing process
- void writeInternalDelaunayVertices(const fileName& instance) const;
-
- //- Prepare data and call writeMesh for polyMesh and
- // tetDualMesh
- void writeMesh(const fileName& instance);
-
- //- Write mesh to disk
- void writeMesh
- (
- const word& meshName,
- const fileName& instance,
- pointField& points,
- labelList& boundaryPts,
- faceList& faces,
- labelList& owner,
- labelList& neighbour,
- const wordList& patchTypes,
- const wordList& patchNames,
- const labelList& patchSizes,
- const labelList& patchStarts,
- const labelList& procNeighbours,
- const pointField& cellCentres,
- const PackedBoolList& boundaryFacesToRemove
- ) const;
-
- //- Write points and faces as .obj file
- void writeObjMesh
- (
- const pointField& points,
- const faceList& faces,
- const fileName& fName
- ) const;
-
- //- Calculate and write a field of the target cell size,
- // target cell volume, actual cell volume and equivalent
- // actual cell size (cbrt(actual cell volume)).
- void writeCellSizes(const fvMesh& mesh) const;
-
- void writeCellAlignments(const fvMesh& mesh) const;
-
- //- Calculate and write the cell centres.
- void writeCellCentres(const fvMesh& mesh) const;
-
- //- Find the cellSet of the boundary cells which have points that
- // protrude out of the surface beyond a tolerance.
- labelHashSet findRemainingProtrusionSet(const polyMesh& mesh) const;
-
- void writeProcessorInterface
- (
- const fileName& fName,
- const faceList& faces
- ) const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "conformalVoronoiMeshI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshCalcDualMesh.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshCalcDualMesh.C
deleted file mode 100644
index 66a26f666f1bbc0c3380b41775fdf0f9a314446f..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshCalcDualMesh.C
+++ /dev/null
@@ -1,2571 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "conformalVoronoiMesh.H"
-#include "motionSmoother.H"
-#include "backgroundMeshDecomposition.H"
-#include "polyMeshGeometry.H"
-#include "indexedCellChecks.H"
-
-#include "CGAL/Exact_predicates_exact_constructions_kernel.h"
-#include "CGAL/Gmpq.h"
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-void Foam::conformalVoronoiMesh::checkCells()
-{
- List<List<FixedList<Foam::point, 4> > > cellListList(Pstream::nProcs());
-
- List<FixedList<Foam::point, 4> > cells(number_of_finite_cells());
-
- globalIndex gIndex(number_of_vertices());
-
- label count = 0;
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- if (tetrahedron(cit).volume() == 0)
- {
- Pout<< "ZERO VOLUME TET" << endl;
- Pout<< cit->info();
- Pout<< cit->dual();
- }
-
- if (cit->hasFarPoint())
- {
- continue;
- }
-
- List<labelPair> cellVerticesPair(4);
- List<Foam::point> cellVertices(4);
-
- for (label vI = 0; vI < 4; ++vI)
- {
- cellVerticesPair[vI] = labelPair
- (
- cit->vertex(vI)->procIndex(),
- cit->vertex(vI)->index()
- );
- cellVertices[vI] = topoint(cit->vertex(vI)->point());
- }
-
- List<Foam::point> cellVerticesOld(cellVertices);
- labelList oldToNew;
- sortedOrder(cellVerticesPair, oldToNew);
- oldToNew = invert(oldToNew.size(), oldToNew);
- inplaceReorder(oldToNew, cellVerticesPair);
- inplaceReorder(oldToNew, cellVertices);
-
-// FixedList<label, 4> globalTetCell
-// (
-// cit->globallyOrderedCellVertices(gIndex)
-// );
-//
-// FixedList<Point, 4> cellVertices(Point(0,0,0));
-//
-// forAll(globalTetCell, gvI)
-// {
-// label gI = globalTetCell[gvI];
-//
-// cellVertices[gvI] = cit->vertex(gI)->point();
-// }
-
-// if (cit->hasFarPoint())
-// {
-// continue;
-// }
-
- for (label i = 0; i < 4; ++i)
- {
- //cells[count][i] = topoint(cit->vertex(i)->point());
- cells[count][i] = cellVertices[i];
- }
-
- count++;
- }
-
- cells.setSize(count);
-
- cellListList[Pstream::myProcNo()] = cells;
-
- Pstream::gatherList(cellListList);
-
- if (Pstream::master())
- {
- Info<< "Checking on master processor the cells of each " << nl
- << "processor point list against the master cell list." << nl
- << "There are " << cellListList.size() << " processors" << nl
- << "The size of each processor's cell list is:" << endl;
-
- forAll(cellListList, cfI)
- {
- Info<< " Proc " << cfI << " has " << cellListList[cfI].size()
- << " cells" << endl;
- }
-
- label nMatches = 0, nMatchFoundDiffOrder = 0;
-
- forAll(cellListList[0], cmI)
- {
- const FixedList<Foam::point, 4>& masterCell = cellListList[0][cmI];
-
- bool matchFound = false;
- bool matchFoundDiffOrder = false;
-
- forAll(cellListList, cpI)
- {
- if (cpI == 0)
- {
- continue;
- }
-
- forAll(cellListList[cpI], csI)
- {
- const FixedList<Foam::point, 4>& slaveCell
- = cellListList[cpI][csI];
-
- if (masterCell == slaveCell)
- {
- matchFound = true;
- break;
- }
- else
- {
- label samePt = 0;
-
- forAll(masterCell, mI)
- {
- const Foam::point& mPt = masterCell[mI];
-
- forAll(slaveCell, sI)
- {
- const Foam::point& sPt = slaveCell[sI];
-
- if (mPt == sPt)
- {
- samePt++;
- }
- }
- }
-
- if (samePt == 4)
- {
- matchFoundDiffOrder = true;
-
- Pout<< masterCell << nl << slaveCell << endl;
-
- break;
- }
- }
- }
- }
-
- if (matchFound)
- {
- nMatches++;
- }
-
- if (matchFoundDiffOrder)
- {
- nMatchFoundDiffOrder++;
- }
- }
-
- Info<< "Found " << nMatches << " matching cells and "
- << nMatchFoundDiffOrder << " matching cells with different "
- << "vertex ordering"<< endl;
- }
-}
-
-
-void Foam::conformalVoronoiMesh::checkDuals()
-{
- List<List<Point> > pointFieldList(Pstream::nProcs());
-
- List<Point> duals(number_of_finite_cells());
-
- typedef CGAL::Exact_predicates_exact_constructions_kernel EK2;
- typedef CGAL::Regular_triangulation_euclidean_traits_3<EK2> EK;
- typedef CGAL::Cartesian_converter<baseK::Kernel, EK2> To_exact;
- typedef CGAL::Cartesian_converter<EK2, baseK::Kernel> Back_from_exact;
-
-// PackedBoolList bPoints(number_of_finite_cells());
-
-// indexDualVertices(duals, bPoints);
-
- label count = 0;//duals.size();
-
- duals.setSize(number_of_finite_cells());
-
- globalIndex gIndex(number_of_vertices());
-
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- if (cit->hasFarPoint())
- {
- continue;
- }
-
- duals[count++] = cit->circumcenter();
-
-// List<labelPair> cellVerticesPair(4);
-// List<Point> cellVertices(4);
-//
-// for (label vI = 0; vI < 4; ++vI)
-// {
-// cellVerticesPair[vI] = labelPair
-// (
-// cit->vertex(vI)->procIndex(),
-// cit->vertex(vI)->index()
-// );
-// cellVertices[vI] = cit->vertex(vI)->point();
-// }
-//
-// labelList oldToNew;
-// sortedOrder(cellVerticesPair, oldToNew);
-// oldToNew = invert(oldToNew.size(), oldToNew);
-// inplaceReorder(oldToNew, cellVerticesPair);
-// inplaceReorder(oldToNew, cellVertices);
-//
-// duals[count++] = CGAL::circumcenter
-// (
-// cellVertices[0],
-// cellVertices[1],
-// cellVertices[2],
-// cellVertices[3]
-// );
-
-// To_exact to_exact;
-// Back_from_exact back_from_exact;
-// EK::Construct_circumcenter_3 exact_circumcenter =
-// EK().construct_circumcenter_3_object();
-//
-// duals[count++] = topoint
-// (
-// back_from_exact
-// (
-// exact_circumcenter
-// (
-// to_exact(cit->vertex(0)->point()),
-// to_exact(cit->vertex(1)->point()),
-// to_exact(cit->vertex(2)->point()),
-// to_exact(cit->vertex(3)->point())
-// )
-// )
-// );
- }
-
- Pout<< "Duals Calculated " << count << endl;
-
- duals.setSize(count);
-
- pointFieldList[Pstream::myProcNo()] = duals;
-
- Pstream::gatherList(pointFieldList);
-
- if (Pstream::master())
- {
- Info<< "Checking on master processor the dual locations of each " << nl
- << "processor point list against the master dual list." << nl
- << "There are " << pointFieldList.size() << " processors" << nl
- << "The size of each processor's dual list is:" << endl;
-
- forAll(pointFieldList, pfI)
- {
- Info<< " Proc " << pfI << " has " << pointFieldList[pfI].size()
- << " duals" << endl;
- }
-
- label nNonMatches = 0;
- label nNearMatches = 0;
- label nExactMatches = 0;
-
- forAll(pointFieldList[0], pI)
- {
- const Point& masterPoint = pointFieldList[0][pI];
-
- bool foundMatch = false;
- bool foundNearMatch = false;
-
- scalar minCloseness = GREAT;
- Point closestPoint(0, 0, 0);
-
- forAll(pointFieldList, pfI)
- {
- if (pfI == 0)
- {
- continue;
- }
-
-// label pfI = 1;
-
- forAll(pointFieldList[pfI], pISlave)
- {
- const Point& slavePoint
- = pointFieldList[pfI][pISlave];
-
- if (masterPoint == slavePoint)
- {
- foundMatch = true;
- break;
- }
-
- const scalar closeness = mag
- (
- topoint(masterPoint) - topoint(slavePoint)
- );
-
- if (closeness < 1e-12)
- {
- foundNearMatch = true;
- }
- else
- {
- if (closeness < minCloseness)
- {
- minCloseness = closeness;
- closestPoint = slavePoint;
- }
- }
- }
-
- if (!foundMatch)
- {
- if (foundNearMatch)
- {
- CGAL::Gmpq x(CGAL::to_double(masterPoint.x()));
- CGAL::Gmpq y(CGAL::to_double(masterPoint.y()));
- CGAL::Gmpq z(CGAL::to_double(masterPoint.z()));
-
- std::cout<< "master = " << x << " " << y << " " << z
- << std::endl;
-
- CGAL::Gmpq xs(CGAL::to_double(closestPoint.x()));
- CGAL::Gmpq ys(CGAL::to_double(closestPoint.y()));
- CGAL::Gmpq zs(CGAL::to_double(closestPoint.z()));
- std::cout<< "slave = " << xs << " " << ys << " " << zs
- << std::endl;
-
- nNearMatches++;
- }
- else
- {
- nNonMatches++;
- Info<< " Closest point to " << masterPoint << " is "
- << closestPoint << nl
- << " Separation is " << minCloseness << endl;
-
- CGAL::Gmpq x(CGAL::to_double(masterPoint.x()));
- CGAL::Gmpq y(CGAL::to_double(masterPoint.y()));
- CGAL::Gmpq z(CGAL::to_double(masterPoint.z()));
-
- std::cout<< "master = " << x << " " << y << " " << z
- << std::endl;
-
- CGAL::Gmpq xs(CGAL::to_double(closestPoint.x()));
- CGAL::Gmpq ys(CGAL::to_double(closestPoint.y()));
- CGAL::Gmpq zs(CGAL::to_double(closestPoint.z()));
- std::cout<< "slave = " << xs << " " << ys << " " << zs
- << std::endl;
- }
- }
- else
- {
- nExactMatches++;
- }
- }
- }
-
- Info<< "Found " << nNonMatches << " non-matching duals" << nl
- << " and " << nNearMatches << " near matches"
- << " and " << nExactMatches << " exact matches" << endl;
- }
-}
-
-
-void Foam::conformalVoronoiMesh::checkVertices()
-{
- List<pointField> pointFieldList(Pstream::nProcs());
-
- pointField points(number_of_vertices());
-
- labelPairHashSet duplicateVertices;
-
- label count = 0;
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (duplicateVertices.found(labelPair(vit->procIndex(), vit->index())))
- {
- Pout<< "DUPLICATE " << vit->procIndex() << vit->index() << endl;
- }
- else
- {
- duplicateVertices.insert(labelPair(vit->procIndex(), vit->index()));
- }
-
- points[count++] = topoint(vit->point());
- }
-
- pointFieldList[Pstream::myProcNo()] = points;
-
- Pstream::gatherList(pointFieldList);
-
- OFstream str("missingPoints.obj");
-
- if (Pstream::master())
- {
- Info<< "Checking on master processor the point locations of each " << nl
- << "processor point list against the master point list." << nl
- << "There are " << pointFieldList.size() << " processors" << nl
- << "The size of each processor's point list is:" << endl;
-
- forAll(pointFieldList, pfI)
- {
- Info<< " Proc " << pfI << " has " << pointFieldList[pfI].size()
- << " points" << endl;
- }
-
- label nNonMatches = 0;
-
- forAll(pointFieldList[0], pI)
- {
- const Foam::point& masterPoint = pointFieldList[0][pI];
-
- forAll(pointFieldList, pfI)
- {
- if (pI == 0)
- {
- continue;
- }
-
- bool foundMatch = false;
-
- forAll(pointFieldList[pfI], pISlave)
- {
- const Foam::point& slavePoint
- = pointFieldList[pfI][pISlave];
-
- if (masterPoint == slavePoint)
- {
- foundMatch = true;
- break;
- }
- }
-
- if (!foundMatch)
- {
- Info<< " Proc " << pfI << " Master != Slave -> "
- << masterPoint << endl;
-
- meshTools::writeOBJ(str, masterPoint);
-
- nNonMatches++;
- }
- }
- }
-
- Info<< "Found a total of " << nNonMatches << " non-matching points"
- << endl;
- }
-}
-
-
-void Foam::conformalVoronoiMesh::calcDualMesh
-(
- pointField& points,
- labelList& boundaryPts,
- faceList& faces,
- labelList& owner,
- labelList& neighbour,
- wordList& patchTypes,
- wordList& patchNames,
- labelList& patchSizes,
- labelList& patchStarts,
- labelList& procNeighbours,
- pointField& cellCentres,
- labelList& cellToDelaunayVertex,
- labelListList& patchToDelaunayVertex,
- PackedBoolList& boundaryFacesToRemove
-)
-{
- timeCheck("Start calcDualMesh");
-
-// if (debug)
-// {
-// Pout<< nl << "Perfoming some checks . . ." << nl << nl
-// << "Total number of vertices = " << number_of_vertices() << nl
-// << "Total number of cells = " << number_of_finite_cells()
-// << endl;
-//
-// checkVertices();
-// checkCells();
-// checkDuals();
-//
-// Info<< nl << "Finished checks" << nl << endl;
-// }
-
- setVertexSizeAndAlignment();
-
- timeCheck("After setVertexSizeAndAlignment");
-
- indexDualVertices(points, boundaryPts);
-
- {
- Info<< nl << "Merging identical points" << endl;
-
- // There is no guarantee that a merge of close points is no-risk
- mergeIdenticalDualVertices(points, boundaryPts);
- }
-
- // Final dual face and owner neighbour construction
-
- timeCheck("Before createFacesOwnerNeighbourAndPatches");
-
- createFacesOwnerNeighbourAndPatches
- (
- faces,
- owner,
- neighbour,
- patchTypes,
- patchNames,
- patchSizes,
- patchStarts,
- procNeighbours,
- patchToDelaunayVertex, // from patch face to Delaunay vertex (slavePp)
- boundaryFacesToRemove,
- false
- );
-
- // deferredCollapseFaceSet(owner, neighbour, deferredCollapseFaces);
-
- cellCentres = allPoints();
-
- cellToDelaunayVertex = removeUnusedCells(owner, neighbour);
-
- cellCentres = pointField(cellCentres, cellToDelaunayVertex);
-
- removeUnusedPoints(faces, points, boundaryPts);
-
- timeCheck("End of calcDualMesh");
-}
-
-
-void Foam::conformalVoronoiMesh::calcTetMesh
-(
- pointField& points,
- labelList& pointToDelaunayVertex,
- faceList& faces,
- labelList& owner,
- labelList& neighbour,
- wordList& patchTypes,
- wordList& patchNames,
- labelList& patchSizes,
- labelList& patchStarts
-)
-{
- labelList vertexMap(number_of_vertices());
-
- label vertI = 0;
-
- points.setSize(number_of_vertices());
- pointToDelaunayVertex.setSize(number_of_vertices());
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalPoint() || vit->boundaryPoint())
- {
- vertexMap[vit->index()] = vertI;
- points[vertI] = topoint(vit->point());
- pointToDelaunayVertex[vertI] = vit->index();
- vertI++;
- }
- }
-
- points.setSize(vertI);
- pointToDelaunayVertex.setSize(vertI);
-
- label cellI = 0;
-
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- if (cit->internalOrBoundaryDualVertex())
- {
- cit->cellIndex() = cellI++;
- }
- else
- {
- cit->cellIndex() = Cb::ctFar;
- }
- }
-
- patchNames = geometryToConformTo_.patchNames();
-
- patchNames.setSize(patchNames.size() + 1);
-
- patchNames[patchNames.size() - 1] = "cvMesh_defaultPatch";
- patchTypes.setSize(patchNames.size(), wallPolyPatch::typeName);
-
- label nPatches = patchNames.size();
-
- List<DynamicList<face> > patchFaces(nPatches, DynamicList<face>(0));
-
- List<DynamicList<label> > patchOwners(nPatches, DynamicList<label>(0));
-
- faces.setSize(number_of_finite_facets());
-
- owner.setSize(number_of_finite_facets());
-
- neighbour.setSize(number_of_finite_facets());
-
- label faceI = 0;
-
- labelList verticesOnTriFace(3, -1);
-
- face newFace(verticesOnTriFace);
-
- for
- (
- Delaunay::Finite_facets_iterator fit = finite_facets_begin();
- fit != finite_facets_end();
- ++fit
- )
- {
- const Cell_handle c1(fit->first);
- const int oppositeVertex = fit->second;
- const Cell_handle c2(c1->neighbor(oppositeVertex));
-
- if (c1->hasFarPoint() && c2->hasFarPoint())
- {
- // Both tets are outside, skip
- continue;
- }
-
- label c1I = c1->cellIndex();
- label c2I = c2->cellIndex();
-
- label ownerCell = -1;
- label neighbourCell = -1;
-
- for (label i = 0; i < 3; i++)
- {
- verticesOnTriFace[i] = vertexMap
- [
- c1->vertex(vertex_triple_index(oppositeVertex, i))->index()
- ];
- }
-
- newFace = face(verticesOnTriFace);
-
- if (c1->hasFarPoint() || c2->hasFarPoint())
- {
- // Boundary face...
- if (c1->hasFarPoint())
- {
- //... with c1 outside
- ownerCell = c2I;
- }
- else
- {
- // ... with c2 outside
- ownerCell = c1I;
-
- reverse(newFace);
- }
-
- label patchIndex = geometryToConformTo_.findPatch
- (
- newFace.centre(points)
- );
-
- if (patchIndex == -1)
- {
- patchIndex = patchNames.size() - 1;
-
- WarningIn("Foam::conformalVoronoiMesh::calcTetMesh")
- << "Tet face centre at " << nl
- << newFace.centre(points) << nl
- << "did not find a surface patch. Adding to "
- << patchNames[patchIndex]
- << endl;
- }
-
- patchFaces[patchIndex].append(newFace);
- patchOwners[patchIndex].append(ownerCell);
- }
- else
- {
- // Internal face...
- if (c1I < c2I)
- {
- // ...with c1 as the ownerCell
- ownerCell = c1I;
- neighbourCell = c2I;
-
- reverse(newFace);
- }
- else
- {
- // ...with c2 as the ownerCell
- ownerCell = c2I;
- neighbourCell = c1I;
- }
-
- faces[faceI] = newFace;
- owner[faceI] = ownerCell;
- neighbour[faceI] = neighbourCell;
- faceI++;
- }
- }
-
- label nInternalFaces = faceI;
-
- faces.setSize(nInternalFaces);
- owner.setSize(nInternalFaces);
- neighbour.setSize(nInternalFaces);
-
- sortFaces(faces, owner, neighbour);
-
-// addPatches
-// (
-// nInternalFaces,
-// faces,
-// owner,
-// patchSizes,
-// patchStarts,
-// patchFaces,
-// patchOwners
-// );
-}
-
-
-void Foam::conformalVoronoiMesh::mergeIdenticalDualVertices
-(
- const pointField& pts,
- const labelList& boundaryPts
-)
-{
- // Assess close points to be merged
-
- label nPtsMerged = 0;
- label nPtsMergedSum = 0;
-
- do
- {
- Map<label> dualPtIndexMap;
-
- nPtsMerged = mergeIdenticalDualVertices
- (
- pts,
- boundaryPts,
- dualPtIndexMap
- );
-
- reindexDualVertices(dualPtIndexMap);
-
- reduce(nPtsMerged, sumOp<label>());
-
- nPtsMergedSum += nPtsMerged;
-
- } while (nPtsMerged > 0);
-
- if (nPtsMergedSum > 0)
- {
- Info<< " Merged " << nPtsMergedSum << " points " << endl;
- }
-}
-
-
-Foam::label Foam::conformalVoronoiMesh::mergeIdenticalDualVertices
-(
- const pointField& pts,
- const labelList& boundaryPts,
- Map<label>& dualPtIndexMap
-) const
-{
- label nPtsMerged = 0;
-
- for
- (
- Delaunay::Finite_facets_iterator fit = finite_facets_begin();
- fit != finite_facets_end();
- ++fit
- )
- {
- const Cell_handle c1(fit->first);
- const int oppositeVertex = fit->second;
- const Cell_handle c2(c1->neighbor(oppositeVertex));
-
- if (is_infinite(c1) || is_infinite(c2))
- {
- continue;
- }
-
- label& c1I = c1->cellIndex();
- label& c2I = c2->cellIndex();
-
- if ((c1I != c2I) && !c1->hasFarPoint() && !c2->hasFarPoint())
- {
- const Foam::point& p1 = pts[c1I];
- const Foam::point& p2 = pts[c2I];
-
- if (p1 == p2)
- {
- if (c1I < c2I)
- {
- dualPtIndexMap.insert(c1I, c1I);
- dualPtIndexMap.insert(c2I, c1I);
- }
- else
- {
- dualPtIndexMap.insert(c1I, c2I);
- dualPtIndexMap.insert(c2I, c2I);
- }
-
- nPtsMerged++;
- }
- }
- }
-
- if (debug)
- {
- Info<< "mergeIdenticalDualVertices:" << endl
- << " zero-length edges : "
- << returnReduce(nPtsMerged, sumOp<label>()) << endl
- << endl;
- }
-
- return nPtsMerged;
-}
-
-
-//void Foam::conformalVoronoiMesh::smoothSurface
-//(
-// pointField& pts,
-// const labelList& boundaryPts
-//)
-//{
-// label nCollapsedFaces = 0;
-//
-// label iterI = 0;
-//
-// do
-// {
-// Map<label> dualPtIndexMap;
-//
-// nCollapsedFaces = smoothSurfaceDualFaces
-// (
-// pts,
-// boundaryPts,
-// dualPtIndexMap
-// );
-//
-// reduce(nCollapsedFaces, sumOp<label>());
-//
-// reindexDualVertices(dualPtIndexMap);
-//
-// mergeIdenticalDualVertices(pts, boundaryPts);
-//
-// if (nCollapsedFaces > 0)
-// {
-// Info<< " Collapsed " << nCollapsedFaces << " boundary faces"
-// << endl;
-// }
-//
-// if (++iterI > cvMeshControls().maxCollapseIterations())
-// {
-// Info<< " maxCollapseIterations reached, stopping collapse"
-// << endl;
-//
-// break;
-// }
-//
-// } while (nCollapsedFaces > 0);
-//
-// // Force all points of boundary faces to be on the surface
-//// for
-//// (
-//// Delaunay::Finite_cells_iterator cit = finite_cells_begin();
-//// cit != finite_cells_end();
-//// ++cit
-//// )
-//// {
-//// label ptI = cit->cellIndex();
-////
-//// label fC = cit->filterCount();
-////
-//// if (fC > cvMeshControls().filterCountSkipThreshold())
-//// {
-//// // This vertex has been limited too many times, skip
-//// continue;
-//// }
-////
-//// // Only cells with indices > -1 are valid
-//// if (ptI > -1)
-//// {
-//// if (boundaryPts[ptI] != -1)
-//// {
-//// Foam::point& pt = pts[ptI];
-////
-//// pointIndexHit surfHit;
-//// label hitSurface;
-////
-//// geometryToConformTo_.findSurfaceNearest
-//// (
-//// pt,
-//// sqr(GREAT),
-//// surfHit,
-//// hitSurface
-//// );
-////
-//// if (surfHit.hit())
-//// {
-//// pt += (surfHit.hitPoint() - pt)
-//// *pow
-//// (
-//// cvMeshControls().filterErrorReductionCoeff(),
-//// fC
-//// );
-//// }
-//// }
-//// }
-//// }
-////
-//// mergeCloseDualVertices(pts, boundaryPts);
-//}
-//
-//
-//Foam::label Foam::conformalVoronoiMesh::smoothSurfaceDualFaces
-//(
-// pointField& pts,
-// const labelList& boundaryPts,
-// Map<label>& dualPtIndexMap
-//) const
-//{
-// label nCollapsedFaces = 0;
-//
-// const scalar cosPerpendicularToleranceAngle = cos
-// (
-// degToRad(cvMeshControls().surfaceStepFaceAngle())
-// );
-//
-// for
-// (
-// Delaunay::Finite_edges_iterator eit = finite_edges_begin();
-// eit != finite_edges_end();
-// ++eit
-// )
-// {
-// Cell_circulator ccStart = incident_cells(*eit);
-// Cell_circulator cc = ccStart;
-//
-// bool skipFace = false;
-//
-// do
-// {
-// if (dualPtIndexMap.found(cc->cellIndex()))
-// {
-// // One of the points of this face has already been
-// // collapsed this sweep, leave for next sweep
-//
-// skipFace = true;
-//
-// break;
-// }
-//
-// } while (++cc != ccStart);
-//
-// if (skipFace)
-// {
-// continue;
-// }
-//
-// if (isBoundaryDualFace(eit))
-// {
-// face dualFace = buildDualFace(eit);
-//
-// if (dualFace.size() < 3)
-// {
-// // This face has been collapsed already
-// continue;
-// }
-//
-// label maxFC = maxFilterCount(eit);
-//
-// if (maxFC > cvMeshControls().filterCountSkipThreshold())
-// {
-// // A vertex on this face has been limited too many
-// // times, skip
-// continue;
-// }
-//
-// Cell_handle c = eit->first;
-// Vertex_handle vA = c->vertex(eit->second);
-// Vertex_handle vB = c->vertex(eit->third);
-//
-// if
-// (
-// vA->internalBoundaryPoint() && vA->surfacePoint()
-// && vB->externalBoundaryPoint() && vB->surfacePoint()
-// )
-// {
-// if (vA->index() == vB->index() - 1)
-// {
-// continue;
-// }
-// }
-// else if
-// (
-// vA->externalBoundaryPoint() && vA->surfacePoint()
-// && vB->internalBoundaryPoint() && vB->surfacePoint()
-// )
-// {
-// if (vA->index() == vB->index() + 1)
-// {
-// continue;
-// }
-// }
-//// else if
-//// (
-//// vA->internalBoundaryPoint() && vA->featureEdgePoint()
-//// && vB->externalBoundaryPoint() && vB->featureEdgePoint()
-//// )
-//// {
-//// if (vA->index() == vB->index() - 1)
-//// {
-//// continue;
-//// }
-//// }
-//// else if
-//// (
-//// vA->externalBoundaryPoint() && vA->featureEdgePoint()
-//// && vB->internalBoundaryPoint() && vB->featureEdgePoint()
-//// )
-//// {
-//// if (vA->index() == vB->index() + 1)
-//// {
-//// continue;
-//// }
-//// }
-//// else if
-//// (
-//// vA->internalBoundaryPoint() && vA->featurePoint()
-//// && vB->externalBoundaryPoint() && vB->featurePoint()
-//// )
-//// {
-//// if (vA->index() == vB->index() - 1)
-//// {
-//// continue;
-//// }
-//// }
-//// else if
-//// (
-//// vA->externalBoundaryPoint() && vA->featurePoint()
-//// && vB->internalBoundaryPoint() && vB->featurePoint()
-//// )
-//// {
-//// if (vA->index() == vB->index() + 1)
-//// {
-//// continue;
-//// }
-//// }
-//
-//
-// if ((faceNormal & surfaceNormal) < cosPerpendicularToleranceAngle)
-// {
-// scalar targetFaceSize = averageAnyCellSize(vA, vB);
-//
-// // Selecting faces to collapse based on angle to
-// // surface, so set collapseSizeLimitCoeff to GREAT to
-// // allow collapse of all faces
-//
-// faceCollapseMode mode = collapseFace
-// (
-// dualFace,
-// pts,
-// boundaryPts,
-// dualPtIndexMap,
-// targetFaceSize,
-// GREAT,
-// maxFC
-// );
-//
-// if (mode == fcmPoint || mode == fcmEdge)
-// {
-// nCollapsedFaces++;
-// }
-// }
-// }
-// }
-//
-// return nCollapsedFaces;
-//}
-
-
-void Foam::conformalVoronoiMesh::deferredCollapseFaceSet
-(
- labelList& owner,
- labelList& neighbour,
- const HashSet<labelPair, labelPair::Hash<> >& deferredCollapseFaces
-) const
-{
- DynamicList<label> faceLabels;
-
- forAll(neighbour, nI)
- {
- if (deferredCollapseFaces.found(Pair<label>(owner[nI], neighbour[nI])))
- {
- faceLabels.append(nI);
- }
- }
-
- Pout<< "facesToCollapse" << nl << faceLabels << endl;
-}
-
-
-Foam::autoPtr<Foam::polyMesh>
-Foam::conformalVoronoiMesh::createPolyMeshFromPoints
-(
- const pointField& pts
-) const
-{
- faceList faces;
- labelList owner;
- labelList neighbour;
- wordList patchTypes;
- wordList patchNames;
- labelList patchSizes;
- labelList patchStarts;
- labelList procNeighbours;
- pointField cellCentres;
- labelListList patchToDelaunayVertex;
- PackedBoolList boundaryFacesToRemove;
-
- timeCheck("Start of checkPolyMeshQuality");
-
- Info<< nl << "Creating polyMesh to assess quality" << endl;
-
- createFacesOwnerNeighbourAndPatches
- (
- faces,
- owner,
- neighbour,
- patchTypes,
- patchNames,
- patchSizes,
- patchStarts,
- procNeighbours,
- patchToDelaunayVertex,
- boundaryFacesToRemove,
- false
- );
-
- //createCellCentres(cellCentres);
- cellCentres = allPoints();
-
- labelList cellToDelaunayVertex(removeUnusedCells(owner, neighbour));
- cellCentres = pointField(cellCentres, cellToDelaunayVertex);
-
- autoPtr<polyMesh> meshPtr
- (
- new polyMesh
- (
- IOobject
- (
- "cvMesh_temporary",
- runTime_.timeName(),
- runTime_,
- IOobject::NO_READ,
- IOobject::NO_WRITE
- ),
- xferCopy(pts),
- xferMove(faces),
- xferMove(owner),
- xferMove(neighbour)
- )
- );
-
- polyMesh& pMesh = meshPtr();
-
- List<polyPatch*> patches(patchStarts.size());
-
- label nValidPatches = 0;
-
- forAll(patches, p)
- {
- if (patchTypes[p] == processorPolyPatch::typeName)
- {
- // Do not create empty processor patches
- if (patchSizes[p] > 0)
- {
- patches[nValidPatches] = new processorPolyPatch
- (
- patchNames[p],
- patchSizes[p],
- patchStarts[p],
- nValidPatches,
- pMesh.boundaryMesh(),
- Pstream::myProcNo(),
- procNeighbours[p],
- coupledPolyPatch::COINCIDENTFULLMATCH
- );
-
- nValidPatches++;
- }
- }
- else
- {
- patches[nValidPatches] = polyPatch::New
- (
- patchTypes[p],
- patchNames[p],
- patchSizes[p],
- patchStarts[p],
- nValidPatches,
- pMesh.boundaryMesh()
- ).ptr();
-
- nValidPatches++;
- }
- }
-
- patches.setSize(nValidPatches);
-
- pMesh.addPatches(patches);
-
- // Info<< "ADDPATCHES NOT IN PARALLEL" << endl;
-
- // forAll(patches, p)
- // {
- // patches[p] = new polyPatch
- // (
- // patchNames[p],
- // patchSizes[p],
- // patchStarts[p],
- // p,
- // pMesh.boundaryMesh()
- // );
- // }
-
- // pMesh.addPatches(patches, false);
-
- // pMesh.overrideCellCentres(cellCentres);
-
- return meshPtr;
-}
-
-
-void Foam::conformalVoronoiMesh::checkCellSizing()
-{
- Info<< "Checking cell sizes..."<< endl;
-
- timeCheck("Start of Cell Sizing");
-
- labelList boundaryPts(number_of_finite_cells(), -1);
- pointField ptsField;
-
- indexDualVertices(ptsField, boundaryPts);
-
- // Merge close dual vertices.
- mergeIdenticalDualVertices(ptsField, boundaryPts);
-
- autoPtr<polyMesh> meshPtr = createPolyMeshFromPoints(ptsField);
- const polyMesh& pMesh = meshPtr();
-
- //pMesh.write();
-
- // Find cells with poor quality
- DynamicList<label> checkFaces(identity(pMesh.nFaces()));
- labelHashSet wrongFaces(pMesh.nFaces()/100);
-
- Info<< "Running checkMesh on mesh with " << pMesh.nCells()
- << " cells "<< endl;
-
- const dictionary& dict
- = cvMeshControls().cvMeshDict().subDict("meshQualityControls");
-
- const scalar maxNonOrtho = readScalar(dict.lookup("maxNonOrtho", true));
-
- label nWrongFaces = 0;
-
- if (maxNonOrtho < 180.0 - SMALL)
- {
- polyMeshGeometry::checkFaceDotProduct
- (
- false,
- maxNonOrtho,
- pMesh,
- pMesh.cellCentres(),
- pMesh.faceAreas(),
- checkFaces,
- List<labelPair>(),
- &wrongFaces
- );
-
- label nNonOrthogonal = returnReduce(wrongFaces.size(), sumOp<label>());
-
- Info<< " non-orthogonality > " << maxNonOrtho
- << " degrees : " << nNonOrthogonal << endl;
-
- nWrongFaces += nNonOrthogonal;
- }
-
- labelHashSet protrudingCells = findOffsetPatchFaces(pMesh, 0.25);
-
- label nProtrudingCells = protrudingCells.size();
-
- Info<< " protruding/intruding cells : " << nProtrudingCells << endl;
-
- nWrongFaces += nProtrudingCells;
-
-// motionSmoother::checkMesh
-// (
-// false,
-// pMesh,
-// cvMeshControls().cvMeshDict().subDict("meshQualityControls"),
-// checkFaces,
-// wrongFaces
-// );
-
- Info<< " Found total of " << nWrongFaces << " bad faces" << endl;
-
- {
- labelHashSet cellsToResizeMap(pMesh.nFaces()/100);
-
- // Find cells that are attached to the faces in wrongFaces.
- forAllConstIter(labelHashSet, wrongFaces, iter)
- {
- const label faceOwner = pMesh.faceOwner()[iter.key()];
- const label faceNeighbour = pMesh.faceNeighbour()[iter.key()];
-
- if (!cellsToResizeMap.found(faceOwner))
- {
- cellsToResizeMap.insert(faceOwner);
- }
-
- if (!cellsToResizeMap.found(faceNeighbour))
- {
- cellsToResizeMap.insert(faceNeighbour);
- }
- }
-
- cellsToResizeMap += protrudingCells;
-
- pointField cellsToResize(cellsToResizeMap.size());
-
- label count = 0;
- for (label cellI = 0; cellI < pMesh.nCells(); ++cellI)
- {
- if (cellsToResizeMap.found(cellI))
- {
- cellsToResize[count++] = pMesh.cellCentres()[cellI];
- }
- }
-
- Info<< " DISABLED: Automatically re-sizing " << cellsToResize.size()
- << " cells that are attached to the bad faces: " << endl;
-
- //cellSizeControl_.setCellSizes(cellsToResize);
- }
-
- timeCheck("End of Cell Sizing");
-
- Info<< "Finished checking cell sizes"<< endl;
-}
-
-
-Foam::labelHashSet Foam::conformalVoronoiMesh::findOffsetPatchFaces
-(
- const polyMesh& mesh,
- const scalar allowedOffset
-) const
-{
- timeCheck("Start findRemainingProtrusionSet");
-
- const polyBoundaryMesh& patches = mesh.boundaryMesh();
-
- cellSet offsetBoundaryCells
- (
- mesh,
- "cvMesh_protrudingCells",
- mesh.nCells()/1000
- );
-
- forAll(patches, patchI)
- {
- const polyPatch& patch = patches[patchI];
-
- const faceList& localFaces = patch.localFaces();
- const pointField& localPoints = patch.localPoints();
-
- const labelList& fCell = patch.faceCells();
-
- forAll(localFaces, pLFI)
- {
- const face& f = localFaces[pLFI];
-
- const Foam::point& faceCentre = f.centre(localPoints);
-
- const scalar targetSize = targetCellSize(faceCentre);
-
- pointIndexHit pHit;
- label surfHit = -1;
-
- geometryToConformTo_.findSurfaceNearest
- (
- faceCentre,
- sqr(targetSize),
- pHit,
- surfHit
- );
-
- if
- (
- pHit.hit()
- && (mag(pHit.hitPoint() - faceCentre) > allowedOffset*targetSize)
- )
- {
- offsetBoundaryCells.insert(fCell[pLFI]);
- }
- }
- }
-
- if (cvMeshControls().objOutput())
- {
- offsetBoundaryCells.write();
- }
-
- return offsetBoundaryCells;
-}
-
-
-Foam::labelHashSet Foam::conformalVoronoiMesh::checkPolyMeshQuality
-(
- const pointField& pts
-) const
-{
- autoPtr<polyMesh> meshPtr = createPolyMeshFromPoints(pts);
- polyMesh& pMesh = meshPtr();
-
- timeCheck("polyMesh created, checking quality");
-
- labelHashSet wrongFaces(pMesh.nFaces()/100);
-
- DynamicList<label> checkFaces(pMesh.nFaces());
-
- const vectorField& fAreas = pMesh.faceAreas();
-
- scalar faceAreaLimit = SMALL;
-
- forAll(fAreas, fI)
- {
- if (mag(fAreas[fI]) > faceAreaLimit)
- {
- checkFaces.append(fI);
- }
- }
-
- Info<< nl << "Excluding "
- << returnReduce(fAreas.size() - checkFaces.size(), sumOp<label>())
- << " faces from check, < " << faceAreaLimit << " area" << endl;
-
- motionSmoother::checkMesh
- (
- false,
- pMesh,
- cvMeshControls().cvMeshDict().subDict("meshQualityControls"),
- checkFaces,
- wrongFaces
- );
-
- {
- // Check for cells with more than 1 but fewer than 4 faces
- label nInvalidPolyhedra = 0;
-
- const cellList& cells = pMesh.cells();
-
- forAll(cells, cI)
- {
- if (cells[cI].size() < 4 && cells[cI].size() > 0)
- {
- // Pout<< "cell " << cI << " " << cells[cI]
- // << " has " << cells[cI].size() << " faces."
- // << endl;
-
- nInvalidPolyhedra++;
-
- forAll(cells[cI], cFI)
- {
- wrongFaces.insert(cells[cI][cFI]);
- }
- }
- }
-
- Info<< " cells with more than 1 but fewer than 4 faces : "
- << returnReduce(nInvalidPolyhedra, sumOp<label>())
- << endl;
-
- // Check for cells with one internal face only
-
- labelList nInternalFaces(pMesh.nCells(), 0);
-
- for (label fI = 0; fI < pMesh.nInternalFaces(); fI++)
- {
- nInternalFaces[pMesh.faceOwner()[fI]]++;
- nInternalFaces[pMesh.faceNeighbour()[fI]]++;
- }
-
- const polyBoundaryMesh& patches = pMesh.boundaryMesh();
-
- forAll(patches, patchI)
- {
- if (patches[patchI].coupled())
- {
- const labelUList& owners = patches[patchI].faceCells();
-
- forAll(owners, i)
- {
- nInternalFaces[owners[i]]++;
- }
- }
- }
-
- label oneInternalFaceCells = 0;
-
- forAll(nInternalFaces, cI)
- {
- if (nInternalFaces[cI] <= 1)
- {
- oneInternalFaceCells++;
-
- forAll(cells[cI], cFI)
- {
- wrongFaces.insert(cells[cI][cFI]);
- }
- }
- }
-
- Info<< " cells with with zero or one non-boundary face : "
- << returnReduce(oneInternalFaceCells, sumOp<label>())
- << endl;
- }
-
-
- PackedBoolList ptToBeLimited(pts.size(), false);
-
- forAllConstIter(labelHashSet, wrongFaces, iter)
- {
- const face f = pMesh.faces()[iter.key()];
-
- forAll(f, fPtI)
- {
- ptToBeLimited[f[fPtI]] = true;
- }
- }
-
- // // Limit connected cells
-
- // labelHashSet limitCells(pMesh.nCells()/100);
-
- // const labelListList& ptCells = pMesh.pointCells();
-
- // forAllConstIter(labelHashSet, wrongFaces, iter)
- // {
- // const face f = pMesh.faces()[iter.key()];
-
- // forAll(f, fPtI)
- // {
- // label ptI = f[fPtI];
-
- // const labelList& pC = ptCells[ptI];
-
- // forAll(pC, pCI)
- // {
- // limitCells.insert(pC[pCI]);
- // }
- // }
- // }
-
- // const labelListList& cellPts = pMesh.cellPoints();
-
- // forAllConstIter(labelHashSet, limitCells, iter)
- // {
- // label cellI = iter.key();
-
- // const labelList& cP = cellPts[cellI];
-
- // forAll(cP, cPI)
- // {
- // ptToBeLimited[cP[cPI]] = true;
- // }
- // }
-
-
- // Apply Delaunay cell filterCounts and determine the maximum
- // overall filterCount
-
- label maxFilterCount = 0;
-
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- label cI = cit->cellIndex();
-
- if (cI >= 0)
- {
- if (ptToBeLimited[cI] == true)
- {
- cit->filterCount()++;
- }
-
- if (cit->filterCount() > maxFilterCount)
- {
- maxFilterCount = cit->filterCount();
- }
- }
- }
-
- Info<< nl << "Maximum number of filter limits applied: "
- << returnReduce(maxFilterCount, maxOp<label>()) << endl;
-
- return wrongFaces;
-}
-
-
-void Foam::conformalVoronoiMesh::indexDualVertices
-(
- pointField& pts,
- labelList& boundaryPts
-)
-{
- // Indexing Delaunay cells, which are the dual vertices
-
- this->resetCellCount();
-
- pts.setSize(number_of_finite_cells());
-
- boundaryPts.setSize(number_of_finite_cells(), -1);
-
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
-// if (tetrahedron(cit).volume() == 0)
-// {
-// Pout<< "ZERO VOLUME TET" << endl;
-// Pout<< cit->info();
-// Pout<< "Dual = " << cit->dual();
-// }
-
- if (!cit->hasFarPoint())
- {
- cit->cellIndex() = getNewCellIndex();
-
- // For nearly coplanar Delaunay cells that are present on different
- // processors the result of the circumcentre calculation depends on
- // the ordering of the vertices, so synchronise it across processors
-
- if (Pstream::parRun() && cit->parallelDualVertex())
- {
- typedef CGAL::Exact_predicates_exact_constructions_kernel Exact;
- typedef CGAL::Point_3<Exact> ExactPoint;
-
- List<labelPair> cellVerticesPair(4);
- List<ExactPoint> cellVertices(4);
-
- for (label vI = 0; vI < 4; ++vI)
- {
- cellVerticesPair[vI] = labelPair
- (
- cit->vertex(vI)->procIndex(),
- cit->vertex(vI)->index()
- );
-
- cellVertices[vI] = ExactPoint
- (
- cit->vertex(vI)->point().x(),
- cit->vertex(vI)->point().y(),
- cit->vertex(vI)->point().z()
- );
- }
-
- // Sort the vertices so that they will be in the same order on
- // each processor
- labelList oldToNew;
- sortedOrder(cellVerticesPair, oldToNew);
- oldToNew = invert(oldToNew.size(), oldToNew);
- inplaceReorder(oldToNew, cellVertices);
-
- ExactPoint synchronisedDual = CGAL::circumcenter
- (
- cellVertices[0],
- cellVertices[1],
- cellVertices[2],
- cellVertices[3]
- );
-
- pts[cit->cellIndex()] = Foam::point
- (
- CGAL::to_double(synchronisedDual.x()),
- CGAL::to_double(synchronisedDual.y()),
- CGAL::to_double(synchronisedDual.z())
- );
- }
- else
- {
- pts[cit->cellIndex()] = cit->dual();
- }
-
- if (cit->boundaryDualVertex())
- {
- if (cit->featureEdgeDualVertex())
- {
- boundaryPts[cit->cellIndex()] = 1;
- }
- else
- {
- boundaryPts[cit->cellIndex()] = 0;
- }
- }
- }
- else
- {
- cit->cellIndex() = Cb::ctFar;
- }
- }
-
- pts.setSize(this->cellCount());
-
- boundaryPts.setSize(this->cellCount());
-}
-
-
-void Foam::conformalVoronoiMesh::reindexDualVertices
-(
- const Map<label>& dualPtIndexMap
-)
-{
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- if (dualPtIndexMap.found(cit->cellIndex()))
- {
- cit->cellIndex() = dualPtIndexMap[cit->cellIndex()];
- }
- }
-}
-
-
-Foam::label Foam::conformalVoronoiMesh::createPatchInfo
-(
- wordList& patchNames,
- wordList& patchTypes,
- labelList& procNeighbours
-) const
-{
- patchNames = geometryToConformTo_.patchNames();
- patchTypes.setSize(patchNames.size() + 1, wallPolyPatch::typeName);
- procNeighbours.setSize(patchNames.size() + 1, -1);
-
- patchNames.setSize(patchNames.size() + 1);
-
- label defaultPatchIndex = patchNames.size() - 1;
-
- patchTypes[defaultPatchIndex] = wallPolyPatch::typeName;
- procNeighbours[defaultPatchIndex] = -1;
- patchNames[defaultPatchIndex] = "cvMesh_defaultPatch";
-
- label nProcPatches = 0;
-
- if (Pstream::parRun())
- {
- List<boolList> procUsedList
- (
- Pstream::nProcs(),
- boolList(Pstream::nProcs(), false)
- );
-
- boolList& procUsed = procUsedList[Pstream::myProcNo()];
-
- // Determine which processor patches are required
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- vit++
- )
- {
- // This test is not sufficient if one of the processors does
- // not receive a referred vertex from another processor, but does
- // send one to the other processor.
- if (vit->referred())
- {
- procUsed[vit->procIndex()] = true;
- }
- }
-
- // Because the previous test was insufficient, combine the lists.
- Pstream::gatherList(procUsedList);
- Pstream::scatterList(procUsedList);
-
- forAll(procUsedList, procI)
- {
- if (procI != Pstream::myProcNo())
- {
- if (procUsedList[procI][Pstream::myProcNo()])
- {
- procUsed[procI] = true;
- }
- }
- }
-
- forAll(procUsed, pUI)
- {
- if (procUsed[pUI])
- {
- nProcPatches++;
- }
- }
-
- label nNonProcPatches = patchNames.size();
-
- patchNames.setSize(nNonProcPatches + nProcPatches);
- patchTypes.setSize(nNonProcPatches + nProcPatches);
- procNeighbours.setSize(nNonProcPatches + nProcPatches, -1);
-
- label procAddI = 0;
-
- forAll(procUsed, pUI)
- {
- if (procUsed[pUI])
- {
- patchTypes[nNonProcPatches + procAddI] =
- processorPolyPatch::typeName;
-
- patchNames[nNonProcPatches + procAddI] =
- "procBoundary"
- + name(Pstream::myProcNo())
- + "to"
- + name(pUI);
-
- procNeighbours[nNonProcPatches + procAddI] = pUI;
-
- procAddI++;
- }
- }
- }
-
- return defaultPatchIndex;
-}
-
-
-void Foam::conformalVoronoiMesh::createFacesOwnerNeighbourAndPatches
-(
- faceList& faces,
- labelList& owner,
- labelList& neighbour,
- wordList& patchTypes,
- wordList& patchNames,
- labelList& patchSizes,
- labelList& patchStarts,
- labelList& procNeighbours,
- labelListList& patchPointPairSlaves,
- PackedBoolList& boundaryFacesToRemove,
- bool includeEmptyPatches
-) const
-{
- const label defaultPatchIndex = createPatchInfo
- (
- patchNames,
- patchTypes,
- procNeighbours
- );
-
- const label nPatches = patchNames.size();
-
- List<DynamicList<face> > patchFaces(nPatches, DynamicList<face>(0));
- List<DynamicList<label> > patchOwners(nPatches, DynamicList<label>(0));
- // Per patch face the index of the slave node of the point pair
- List<DynamicList<label> > patchPPSlaves(nPatches, DynamicList<label>(0));
-
- List<DynamicList<bool> > indirectPatchFace(nPatches, DynamicList<bool>(0));
-
- faces.setSize(number_of_finite_edges());
- owner.setSize(number_of_finite_edges());
- neighbour.setSize(number_of_finite_edges());
-
- labelPairPairDynListList procPatchSortingIndex(nPatches);
-
- label dualFaceI = 0;
-
- for
- (
- Delaunay::Finite_edges_iterator eit = finite_edges_begin();
- eit != finite_edges_end();
- ++eit
- )
- {
- Cell_handle c = eit->first;
- Vertex_handle vA = c->vertex(eit->second);
- Vertex_handle vB = c->vertex(eit->third);
-
- if
- (
- (vA->internalOrBoundaryPoint() && !vA->referred())
- || (vB->internalOrBoundaryPoint() && !vB->referred())
- )
- {
- face newDualFace = buildDualFace(eit);
-
- if (newDualFace.size() >= 3)
- {
- label own = -1;
- label nei = -1;
-
- if (ownerAndNeighbour(vA, vB, own, nei))
- {
- reverse(newDualFace);
- }
-
- if (nei == -1)
- {
- // boundary face
-
- pointFromPoint ptA = topoint(vA->point());
- pointFromPoint ptB = topoint(vB->point());
-
- label patchIndex = -1;
-
- if (isProcBoundaryEdge(eit))
- {
- // One (and only one) of the points is an internal
- // point from another processor
-
- label procIndex = max(vA->procIndex(), vB->procIndex());
-
- patchIndex = max
- (
- findIndex(procNeighbours, vA->procIndex()),
- findIndex(procNeighbours, vB->procIndex())
- );
-
- // The lower processor index is the owner of the
- // two for the purpose of sorting the patch faces.
-
- if (Pstream::myProcNo() < procIndex)
- {
- // Use this processor's vertex index as the master
- // for sorting
-
- DynamicList<Pair<labelPair> >& sortingIndex =
- procPatchSortingIndex[patchIndex];
-
- if (vB->internalOrBoundaryPoint() && vB->referred())
- {
- sortingIndex.append
- (
- Pair<labelPair>
- (
- labelPair(vA->index(), vA->procIndex()),
- labelPair(vB->index(), vB->procIndex())
- )
- );
- }
- else
- {
- sortingIndex.append
- (
- Pair<labelPair>
- (
- labelPair(vB->index(), vB->procIndex()),
- labelPair(vA->index(), vA->procIndex())
- )
- );
- }
- }
- else
- {
- // Use the other processor's vertex index as the
- // master for sorting
-
- DynamicList<Pair<labelPair> >& sortingIndex =
- procPatchSortingIndex[patchIndex];
-
- if (vA->internalOrBoundaryPoint() && vA->referred())
- {
- sortingIndex.append
- (
- Pair<labelPair>
- (
- labelPair(vA->index(), vA->procIndex()),
- labelPair(vB->index(), vB->procIndex())
- )
- );
- }
- else
- {
- sortingIndex.append
- (
- Pair<labelPair>
- (
- labelPair(vB->index(), vB->procIndex()),
- labelPair(vA->index(), vA->procIndex())
- )
- );
- }
- }
-
-// Pout<< ptA << " " << ptB
-// << " proc indices "
-// << vA->procIndex() << " " << vB->procIndex()
-// << " indices " << vA->index()
-// << " " << vB->index()
-// << " my proc " << Pstream::myProcNo()
-// << " addedIndex "
-// << procPatchSortingIndex[patchIndex].last()
-// << endl;
- }
- else
- {
- patchIndex = geometryToConformTo_.findPatch(ptA, ptB);
- }
-
- if (patchIndex == -1)
- {
- // Did not find a surface patch between
- // between Dv pair, finding nearest patch
-
-// Pout<< "Did not find a surface patch between "
-// << "for face, finding nearest patch to"
-// << 0.5*(ptA + ptB) << endl;
-
- patchIndex = geometryToConformTo_.findPatch
- (
- 0.5*(ptA + ptB)
- );
- }
-
- patchFaces[patchIndex].append(newDualFace);
- patchOwners[patchIndex].append(own);
-
- // If the two vertices are a pair, then the patch face is
- // a desired one.
- if (!isPointPair(vA, vB))
- {
- indirectPatchFace[patchIndex].append(true);
- }
- else
- {
- indirectPatchFace[patchIndex].append(false);
- }
-
- // Store the non-internal or boundary point
- if (vA->internalOrBoundaryPoint())
- {
- patchPPSlaves[patchIndex].append(vB->index());
- }
- else
- {
- patchPPSlaves[patchIndex].append(vA->index());
- }
- }
- else
- {
- // internal face
- faces[dualFaceI] = newDualFace;
- owner[dualFaceI] = own;
- neighbour[dualFaceI] = nei;
-
- dualFaceI++;
- }
- }
- }
- }
-
- if (!patchFaces[defaultPatchIndex].empty())
- {
- Pout<< nl << patchFaces[defaultPatchIndex].size()
- << " faces were not able to have their patch determined from "
- << "the surface. "
- << nl << "Adding to patch " << patchNames[defaultPatchIndex]
- << endl;
- }
-
- label nInternalFaces = dualFaceI;
-
- faces.setSize(nInternalFaces);
- owner.setSize(nInternalFaces);
- neighbour.setSize(nInternalFaces);
-
- timeCheck("polyMesh quality checked");
-
- sortFaces(faces, owner, neighbour);
-
- sortProcPatches
- (
- patchFaces,
- patchOwners,
- patchPPSlaves,
- procPatchSortingIndex
- );
-
- timeCheck("faces, owner, neighbour sorted");
-
- addPatches
- (
- nInternalFaces,
- faces,
- owner,
- patchSizes,
- patchStarts,
- boundaryFacesToRemove,
- patchFaces,
- patchOwners,
- indirectPatchFace
- );
-
- // Return patchPointPairSlaves.setSize(nPatches);
- patchPointPairSlaves.setSize(nPatches);
- forAll(patchPPSlaves, patchI)
- {
- patchPointPairSlaves[patchI].transfer(patchPPSlaves[patchI]);
- }
-
-// if (cvMeshControls().objOutput())
- {
- Info<< "Writing processor interfaces" << endl;
-
- forAll(procNeighbours, nbI)
- {
- if (patchFaces[nbI].size() > 0)
- {
- const label neighbour = procNeighbours[nbI];
-
- faceList procPatchFaces = patchFaces[nbI];
-
- // Reverse faces as it makes it easier to analyse the output
- // using a diff
- if (neighbour < Pstream::myProcNo())
- {
- forAll(procPatchFaces, fI)
- {
- procPatchFaces[fI] = procPatchFaces[fI].reverseFace();
- }
- }
-
- if (neighbour != -1)
- {
- word fName =
- "processor_"
- + name(Pstream::myProcNo())
- + "_to_"
- + name(neighbour)
- + "_interface.obj";
-
- writeProcessorInterface(fName, procPatchFaces);
- }
- }
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::createCellCentres
-(
- pointField& cellCentres
-) const
-{
- cellCentres.setSize(number_of_vertices(), point::max);
-
- label vertI = 0;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalOrBoundaryPoint())
- {
- cellCentres[vertI++] = topoint(vit->point());
- }
- }
-
- cellCentres.setSize(vertI);
-}
-
-
-Foam::tmp<Foam::pointField> Foam::conformalVoronoiMesh::allPoints() const
-{
- tmp<pointField> tpts(new pointField(number_of_vertices(), point::max));
- pointField& pts = tpts();
-
- label nVert = 0;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalOrBoundaryPoint())
- {
- pts[nVert++] = topoint(vit->point());
- }
- }
-
- return tpts;
-}
-
-
-void Foam::conformalVoronoiMesh::sortFaces
-(
- faceList& faces,
- labelList& owner,
- labelList& neighbour
-) const
-{
- // Upper triangular order:
- // + owner is sorted in ascending cell order
- // + within each block of equal value for owner, neighbour is sorted in
- // ascending cell order.
- // + faces sorted to correspond
- // e.g.
- // owner | neighbour
- // 0 | 2
- // 0 | 23
- // 0 | 71
- // 1 | 23
- // 1 | 24
- // 1 | 91
-
- List<labelPair> ownerNeighbourPair(owner.size());
-
- forAll(ownerNeighbourPair, oNI)
- {
- ownerNeighbourPair[oNI] = labelPair(owner[oNI], neighbour[oNI]);
- }
-
- Info<< nl
- << "Sorting faces, owner and neighbour into upper triangular order"
- << endl;
-
- labelList oldToNew;
-
- sortedOrder(ownerNeighbourPair, oldToNew);
-
- oldToNew = invert(oldToNew.size(), oldToNew);
-
- inplaceReorder(oldToNew, faces);
- inplaceReorder(oldToNew, owner);
- inplaceReorder(oldToNew, neighbour);
-}
-
-
-void Foam::conformalVoronoiMesh::sortProcPatches
-(
- List<DynamicList<face> >& patchFaces,
- List<DynamicList<label> >& patchOwners,
- List<DynamicList<label> >& patchPointPairSlaves,
- labelPairPairDynListList& patchSortingIndices
-) const
-{
- if (!Pstream::parRun())
- {
- return;
- }
-
- forAll(patchSortingIndices, patchI)
- {
- faceList& faces = patchFaces[patchI];
- labelList& owner = patchOwners[patchI];
- DynamicList<label>& slaves = patchPointPairSlaves[patchI];
-
- DynamicList<Pair<labelPair> >& sortingIndices
- = patchSortingIndices[patchI];
-
- if (!sortingIndices.empty())
- {
- if
- (
- faces.size() != sortingIndices.size()
- || owner.size() != sortingIndices.size()
- || slaves.size() != sortingIndices.size()
- )
- {
- FatalErrorIn
- (
- "void Foam::conformalVoronoiMesh::sortProcPatches"
- "("
- "List<DynamicList<face> >& patchFaces, "
- "List<DynamicList<label> >& patchOwners, "
- "const List<DynamicList<label> >& patchSortingIndices"
- ") const"
- )
- << "patch size and size of sorting indices is inconsistent "
- << " for patch " << patchI << nl
- << " faces.size() " << faces.size() << nl
- << " owner.size() " << owner.size() << nl
- << " slaves.size() " << slaves.size() << nl
- << " sortingIndices.size() "
- << sortingIndices.size()
- << exit(FatalError) << endl;
- }
-
- labelList oldToNew;
-
- sortedOrder(sortingIndices, oldToNew);
-
- oldToNew = invert(oldToNew.size(), oldToNew);
-
- inplaceReorder(oldToNew, sortingIndices);
- inplaceReorder(oldToNew, faces);
- inplaceReorder(oldToNew, owner);
- inplaceReorder(oldToNew, slaves);
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::addPatches
-(
- const label nInternalFaces,
- faceList& faces,
- labelList& owner,
- labelList& patchSizes,
- labelList& patchStarts,
- PackedBoolList& boundaryFacesToRemove,
- const List<DynamicList<face> >& patchFaces,
- const List<DynamicList<label> >& patchOwners,
- const List<DynamicList<bool> >& indirectPatchFace
-) const
-{
- label nPatches = patchFaces.size();
-
- patchSizes.setSize(nPatches, -1);
- patchStarts.setSize(nPatches, -1);
-
- label nBoundaryFaces = 0;
-
- forAll(patchFaces, p)
- {
- patchSizes[p] = patchFaces[p].size();
- patchStarts[p] = nInternalFaces + nBoundaryFaces;
-
- nBoundaryFaces += patchSizes[p];
- }
-
- faces.setSize(nInternalFaces + nBoundaryFaces);
- owner.setSize(nInternalFaces + nBoundaryFaces);
-
- label faceI = nInternalFaces;
-
- forAll(patchFaces, p)
- {
- forAll(patchFaces[p], f)
- {
- faces[faceI] = patchFaces[p][f];
- owner[faceI] = patchOwners[p][f];
- boundaryFacesToRemove[faceI] = indirectPatchFace[p][f];
-
- faceI++;
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::removeUnusedPoints
-(
- faceList& faces,
- pointField& pts,
- labelList& boundaryPts
-) const
-{
- Info<< nl << "Removing unused points" << endl;
-
- PackedBoolList ptUsed(pts.size(), false);
-
- // Scan all faces to find all of the points that are used
-
- forAll(faces, fI)
- {
- const face& f = faces[fI];
-
- forAll(f, fPtI)
- {
- ptUsed[f[fPtI]] = true;
- }
- }
-
- label pointI = 0;
-
- labelList oldToNew(pts.size(), -1);
-
- // Move all of the used points to the start of the pointField and
- // truncate it
-
- forAll(ptUsed, ptUI)
- {
- if (ptUsed[ptUI] == true)
- {
- oldToNew[ptUI] = pointI++;
- }
- }
-
- inplaceReorder(oldToNew, pts);
- inplaceReorder(oldToNew, boundaryPts);
-
- Info<< " Removing "
- << returnReduce(pts.size() - pointI, sumOp<label>())
- << " unused points"
- << endl;
-
- pts.setSize(pointI);
- boundaryPts.setSize(pointI);
-
- // Renumber the faces to use the new point numbers
-
- forAll(faces, fI)
- {
- inplaceRenumber(oldToNew, faces[fI]);
- }
-}
-
-
-Foam::labelList Foam::conformalVoronoiMesh::removeUnusedCells
-(
- labelList& owner,
- labelList& neighbour
-) const
-{
- Info<< nl << "Removing unused cells" << endl;
-
- PackedBoolList cellUsed(number_of_vertices(), false);
-
- // Scan all faces to find all of the cells that are used
-
- forAll(owner, oI)
- {
- cellUsed[owner[oI]] = true;
- }
-
- forAll(neighbour, nI)
- {
- cellUsed[neighbour[nI]] = true;
- }
-
- label cellI = 0;
-
- labelList oldToNew(cellUsed.size(), -1);
-
- // Move all of the used cellCentres to the start of the pointField and
- // truncate it
-
- forAll(cellUsed, cellUI)
- {
- if (cellUsed[cellUI] == true)
- {
- oldToNew[cellUI] = cellI++;
- }
- }
-
- labelList newToOld(invert(cellI, oldToNew));
-
- // Find all of the unused cells, create a list of them, then
- // subtract one from each owner and neighbour entry for each of
- // the unused cell indices that it is above.
-
- DynamicList<label> unusedCells;
-
- forAll(cellUsed, cUI)
- {
- if (cellUsed[cUI] == false)
- {
- unusedCells.append(cUI);
- }
- }
-
- if (unusedCells.size() > 0)
- {
- Info<< " Removing "
- << returnReduce(unusedCells.size(), sumOp<label>())
- << " unused cell labels" << endl;
-
- forAll(owner, oI)
- {
- label& o = owner[oI];
-
- o -= findLower(unusedCells, o) + 1;
- }
-
- forAll(neighbour, nI)
- {
- label& n = neighbour[nI];
-
- n -= findLower(unusedCells, n) + 1;
- }
- }
-
- return newToOld;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshConformToSurface.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshConformToSurface.C
deleted file mode 100644
index 14c5428c816f2941e2889eb16fe92f8b128a1978..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshConformToSurface.C
+++ /dev/null
@@ -1,2106 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "conformalVoronoiMesh.H"
-#include "backgroundMeshDecomposition.H"
-#include "vectorTools.H"
-#include "indexedCellChecks.H"
-#include "IOmanip.H"
-
-using namespace Foam::vectorTools;
-
-const Foam::scalar Foam::conformalVoronoiMesh::searchConeAngle
- = Foam::cos(degToRad(30));
-
-const Foam::scalar Foam::conformalVoronoiMesh::searchAngleOppositeSurface
- = Foam::cos(degToRad(150));
-
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-void Foam::conformalVoronoiMesh::conformToSurface()
-{
- this->resetCellCount();
- // Index the cells
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- cit->cellIndex() = Cb::ctUnassigned;
- }
-
- if (reconformationControl() == rmOff)
- {
- // Reinsert stored surface conformation
- reinsertSurfaceConformation();
-
- if (Pstream::parRun())
- {
- sync(decomposition_().procBounds());
- }
- }
- else
- {
- // Rebuild, insert and store new surface conformation
- buildSurfaceConformation();
-
- if (distributeBackground())
- {
- if (Pstream::parRun())
- {
- sync(decomposition_().procBounds());
- }
-
- // Use storeSizesAndAlignments with no feed points because all
- // background points may have been distributed.
- storeSizesAndAlignments();
- }
-
- // Do not store the surface conformation until after it has been
- // (potentially) redistributed.
- storeSurfaceConformation();
- }
-
- // reportSurfaceConformationQuality();
-}
-
-
-Foam::conformalVoronoiMesh::reconformationMode
-Foam::conformalVoronoiMesh::reconformationControl() const
-{
- if
- (
- runTime_.timeIndex()
- % cvMeshControls().surfaceConformationRebuildFrequency() == 0
- )
- {
- return rmOn;
- }
-
- return rmOff;
-}
-
-
-// @todo Investigate topological tests
-Foam::label Foam::conformalVoronoiMesh::findVerticesNearBoundaries()
-{
- label countNearBoundaryVertices = 0;
-
- for
- (
- Delaunay::Finite_facets_iterator fit = finite_facets_begin();
- fit != finite_facets_end();
- ++fit
- )
- {
- if
- (
- is_infinite(fit->first)
- || is_infinite(fit->first->neighbor(fit->second))
- )
- {
- continue;
- }
-
- Cell_handle c1 = fit->first;
- Cell_handle c2 = fit->first->neighbor(fit->second);
-
- pointFromPoint dE0 = c1->dual();
- pointFromPoint dE1 = c2->dual();
-
- if (!geometryToConformTo_.findSurfaceAnyIntersection(dE0, dE1))
- {
- continue;
- }
-
- for (label cellI = 0; cellI < 4; ++cellI)
- {
- Vertex_handle v = c1->vertex(cellI);
-
- if
- (
- !is_infinite(v)
- && v->internalPoint()
- && fit->second != cellI
- )
- {
- v->setNearBoundary();
- }
- }
-
- for (label cellI = 0; cellI < 4; ++cellI)
- {
- Vertex_handle v = c2->vertex(cellI);
-
- if
- (
- !is_infinite(v)
- && v->internalPoint()
- && fit->second != cellI
- )
- {
- v->setNearBoundary();
- }
- }
- }
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->nearBoundary())
- {
- countNearBoundaryVertices++;
- }
- }
-
- // Geometric test.
-// for
-// (
-// Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
-// vit != finite_vertices_end();
-// ++vit
-// )
-// {
-// if (vit->internalPoint() && !vit->nearBoundary())
-// {
-// pointFromPoint pt = topoint(vit->point());
-//
-// const scalar range = sqr
-// (
-// cvMeshControls().nearBoundaryDistanceCoeff()
-// *targetCellSize(pt)
-// );
-//
-// pointIndexHit pHit;
-// label hitSurface;
-//
-// geometryToConformTo_.findSurfaceNearest
-// (
-// pt,
-// range,
-// pHit,
-// hitSurface
-// );
-//
-// if (pHit.hit())
-// {
-// vit->setNearBoundary();
-// countNearBoundaryVertices++;
-// }
-// }
-// }
-
- return countNearBoundaryVertices;
-}
-
-
-void Foam::conformalVoronoiMesh::buildSurfaceConformation()
-{
- timeCheck("Start buildSurfaceConformation");
-
- if (reconformationControl() == rmOff)
- {
- WarningIn("buildSurfaceConformation()")
- << "reconformationMode rmNone specified, not building conformation"
- << endl;
-
- return;
- }
- else
- {
- Info<< nl << "Rebuilding surface conformation for more iterations"
- << endl;
- }
-
- existingEdgeLocations_.clearStorage();
- existingSurfacePtLocations_.clearStorage();
-
- buildEdgeLocationTree(existingEdgeLocations_);
- buildSurfacePtLocationTree(existingSurfacePtLocations_);
-
- label initialTotalHits = 0;
-
- // Surface protrusion conformation is done in two steps.
- // 1. the dual edges (of all internal vertices) can stretch to
- // 'infinity' so any intersection would be badly behaved. So
- // just find the nearest point on the geometry and insert point
- // pairs.
- // Now most of the surface conformation will be done with some
- // residual protrusions / incursions.
- // 2. find any segments of dual edges outside the geometry. Shoot
- // ray from Delaunay vertex to middle of this segment and introduce
- // point pairs. This will handle e.g.
-
- // protruding section of face:
- //
- // internal
- // \ /
- // -+-----------+-- boundary
- // \ /
- // --------
- //
- // Shoot ray and find intersection with outside segment (x) and
- // introduce point pair (..)
- //
- // |
- // \ . /
- // -+-----|-----+-- boundary
- // \ . /
- // ---x----
-
- // Find vertices near boundaries to speed up subsequent checks.
- label countNearBoundaryVertices = findVerticesNearBoundaries();
-
- Info<< " Vertices marked as being near a boundary: "
- << returnReduce(countNearBoundaryVertices, sumOp<label>())
- << " (estimated)" << endl;
-
- timeCheck("After set near boundary");
-
- const scalar edgeSearchDistCoeffSqr =
- cvMeshControls().edgeSearchDistCoeffSqr();
-
- const scalar surfacePtReplaceDistCoeffSqr =
- cvMeshControls().surfacePtReplaceDistCoeffSqr();
-
- const label AtoV = label(6/Foam::pow(scalar(number_of_vertices()), 3));
-
- // Initial surface protrusion conformation - nearest surface point
- {
- pointIndexHitAndFeatureDynList featureEdgeHits(AtoV/4);
- pointIndexHitAndFeatureDynList surfaceHits(AtoV);
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- vit++
- )
- {
- if (vit->nearBoundary())
- {
- pointIndexHitAndFeatureDynList surfaceIntersections(AtoV);
-
- if
- (
- dualCellSurfaceAllIntersections
- (
- vit,
- surfaceIntersections
- )
- )
- {
- // meshTools::writeOBJ(Pout, vert);
- // meshTools::writeOBJ(Pout, surfHit.hitPoint());
- // Pout<< "l cr0 cr1" << endl;
-
- addSurfaceAndEdgeHits
- (
- vit,
- surfaceIntersections,
- surfacePtReplaceDistCoeffSqr,
- edgeSearchDistCoeffSqr,
- surfaceHits,
- featureEdgeHits
- );
- }
- else
- {
- vit->setInternal();
- countNearBoundaryVertices--;
- }
- }
- }
-
- Info<< " Vertices marked as being near a boundary: "
- << returnReduce(countNearBoundaryVertices, sumOp<label>())
- << " (after dual surface intersection)" << endl;
-
- label nVerts = number_of_vertices();
- label nSurfHits = surfaceHits.size();
- label nFeatEdHits = featureEdgeHits.size();
-
- if (Pstream::parRun())
- {
- reduce(nVerts, sumOp<label>());
- reduce(nSurfHits, sumOp<label>());
- reduce(nFeatEdHits, sumOp<label>());
- }
-
- Info<< nl << "Initial conformation" << nl
- << " Number of vertices " << nVerts << nl
- << " Number of surface hits " << nSurfHits << nl
- << " Number of edge hits " << nFeatEdHits
- << endl;
-
- // In parallel, synchronise the surface trees
- if (Pstream::parRun())
- {
- synchroniseSurfaceTrees(surfaceHits);
- }
-
- insertSurfacePointPairs
- (
- surfaceHits,
- "surfaceConformationLocations_initial.obj"
- );
-
- // In parallel, synchronise the edge trees
- if (Pstream::parRun())
- {
- synchroniseEdgeTrees(featureEdgeHits);
- }
-
- insertEdgePointGroups
- (
- featureEdgeHits,
- "edgeConformationLocations_initial.obj"
- );
-
- timeCheck("After initial conformation");
-
- initialTotalHits = nSurfHits + nFeatEdHits;
- }
-
- // Remember which vertices were referred to each processor so only updates
- // are sent.
- PtrList<labelPairHashSet> referralVertices(Pstream::nProcs());
-
- // Store the vertices that have been received and added from each processor
- // already so that there is no attempt to add them more than once.
- autoPtr<labelPairHashSet> receivedVertices;
-
- if (Pstream::parRun())
- {
- forAll(referralVertices, procI)
- {
- if (procI != Pstream::myProcNo())
- {
- referralVertices.set
- (
- procI,
- new labelPairHashSet(number_of_vertices()/Pstream::nProcs())
- );
- }
- }
-
- receivedVertices.set
- (
- new labelPairHashSet(number_of_vertices()/Pstream::nProcs())
- );
-
- // Build the parallel interface the initial surface conformation
- sync
- (
- decomposition_().procBounds(),
- referralVertices,
- receivedVertices()
- );
- }
-
- label iterationNo = 0;
-
- label maxIterations = cvMeshControls().maxConformationIterations();
-
- scalar iterationToInitialHitRatioLimit =
- cvMeshControls().iterationToInitialHitRatioLimit();
-
- label hitLimit = label(iterationToInitialHitRatioLimit*initialTotalHits);
-
- Info<< nl << "Stopping iterations when: " << nl
- << " total number of hits drops below "
- << iterationToInitialHitRatioLimit
- << " of initial hits (" << hitLimit << ")" << nl
- << " or " << nl
- << " maximum number of iterations (" << maxIterations
- << ") is reached"
- << endl;
-
- // Set totalHits to a large enough positive value to enter the while loop on
- // the first iteration
- label totalHits = initialTotalHits;
-
- while
- (
- totalHits > 0
- && totalHits >= hitLimit
- && iterationNo < maxIterations
- )
- {
- pointIndexHitAndFeatureDynList surfaceHits(0.5*AtoV);
- pointIndexHitAndFeatureDynList featureEdgeHits(0.25*AtoV);
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- // The initial surface conformation has already identified the
- // nearBoundary set of vertices. Previously inserted boundary
- // points and referred internal vertices from other processors can
- // also generate protrusions and must be assessed too.
- if
- (
- vit->nearBoundary()
- || vit->internalBoundaryPoint()
- || (vit->internalOrBoundaryPoint() && vit->referred())
- )
- {
- pointIndexHitAndFeatureDynList surfaceIntersections(0.5*AtoV);
-
- pointIndexHit surfHit;
- label hitSurface;
-
- // Find segments of dual face outside the geometry and find the
- // the middle of this
- dualCellLargestSurfaceProtrusion(vit, surfHit, hitSurface);
-
- if (surfHit.hit())
- {
- surfaceIntersections.append
- (
- pointIndexHitAndFeature(surfHit, hitSurface)
- );
-
- addSurfaceAndEdgeHits
- (
- vit,
- surfaceIntersections,
- surfacePtReplaceDistCoeffSqr,
- edgeSearchDistCoeffSqr,
- surfaceHits,
- featureEdgeHits
- );
- }
- else
- {
- // No surface hit detected so if internal then don't check
- // again
- if (vit->nearBoundary())
- {
- vit->setInternal();
- }
- }
- }
- else if (vit->externalBoundaryPoint())
- {
- pointIndexHitAndFeatureDynList surfaceIntersections(0.5*AtoV);
-
- pointIndexHit surfHit;
- label hitSurface;
-
- // Detect slave (external vertices) whose dual face incurs
- // into nearby (other than originating) geometry
- dualCellLargestSurfaceIncursion(vit, surfHit, hitSurface);
-
- if (surfHit.hit())
- {
- surfaceIntersections.append
- (
- pointIndexHitAndFeature(surfHit, hitSurface)
- );
-
- addSurfaceAndEdgeHits
- (
- vit,
- surfaceIntersections,
- surfacePtReplaceDistCoeffSqr,
- edgeSearchDistCoeffSqr,
- surfaceHits,
- featureEdgeHits
- );
- }
- }
- }
-
- label nVerts = number_of_vertices();
- label nSurfHits = surfaceHits.size();
- label nFeatEdHits = featureEdgeHits.size();
-
- if (Pstream::parRun())
- {
- reduce(nVerts, sumOp<label>());
- reduce(nSurfHits, sumOp<label>());
- reduce(nFeatEdHits, sumOp<label>());
- }
-
- Info<< nl << "Conformation iteration " << iterationNo << nl
- << " Number of vertices " << nVerts << nl
- << " Number of surface hits " << nSurfHits << nl
- << " Number of edge hits " << nFeatEdHits
- << endl;
-
- totalHits = nSurfHits + nFeatEdHits;
-
- label nNotInserted = 0;
-
- if (totalHits > 0)
- {
- // In parallel, synchronise the surface trees
- if (Pstream::parRun())
- {
- nNotInserted += synchroniseSurfaceTrees(surfaceHits);
- }
-
- insertSurfacePointPairs
- (
- surfaceHits,
- "surfaceConformationLocations_" + name(iterationNo) + ".obj"
- );
-
- // In parallel, synchronise the edge trees
- if (Pstream::parRun())
- {
- nNotInserted += synchroniseEdgeTrees(featureEdgeHits);
- }
-
- insertEdgePointGroups
- (
- featureEdgeHits,
- "edgeConformationLocations_" + name(iterationNo) + ".obj"
- );
-
- if (Pstream::parRun())
- {
- sync
- (
- decomposition_().procBounds(),
- referralVertices,
- receivedVertices()
- );
- }
- }
-
- timeCheck("Conformation iteration " + name(iterationNo));
-
- iterationNo++;
-
- if (iterationNo == maxIterations)
- {
- WarningIn("conformalVoronoiMesh::conformToSurface()")
- << "Maximum surface conformation iterations ("
- << maxIterations << ") reached." << endl;
- }
-
- if (totalHits <= nNotInserted)
- {
- Info<< nl << "Total hits (" << totalHits
- << ") less than number of failed insertions (" << nNotInserted
- << "), stopping iterations" << endl;
- break;
- }
-
- if (totalHits < hitLimit)
- {
- Info<< nl << "Total hits (" << totalHits
- << ") less than limit (" << hitLimit
- << "), stopping iterations" << endl;
- }
- }
-
- edgeLocationTreePtr_.clear();
- surfacePtLocationTreePtr_.clear();
-}
-
-
-Foam::label Foam::conformalVoronoiMesh::synchroniseSurfaceTrees
-(
- pointIndexHitAndFeatureList& surfaceHits
-)
-{
- Info<< " Surface tree synchronisation" << endl;
-
- pointIndexHitAndFeatureDynList synchronisedSurfLocations
- (
- surfaceHits.size()
- );
-
- List<pointIndexHitAndFeatureDynList> procSurfLocations(Pstream::nProcs());
-
- procSurfLocations[Pstream::myProcNo()] = surfaceHits;
-
- Pstream::gatherList(procSurfLocations);
- Pstream::scatterList(procSurfLocations);
-
- List<labelHashSet> hits(Pstream::nProcs());
-
- label nStoppedInsertion = 0;
-
- // Do the nearness tests here
- for (label procI = 0; procI < Pstream::nProcs(); ++procI)
- {
- // Skip own points
- if (procI >= Pstream::myProcNo())
- {
- continue;
- }
-
- const pointIndexHitAndFeatureList& otherSurfEdges =
- procSurfLocations[procI];
-
- forAll(otherSurfEdges, peI)
- {
- const Foam::point& pt = otherSurfEdges[peI].first().hitPoint();
-
- pointIndexHit nearest;
- pointIsNearSurfaceLocation(pt, nearest);
-
- pointIndexHit nearestEdge;
- pointIsNearFeatureEdgeLocation(pt, nearestEdge);
-
- bool isNearFeaturePt = nearFeaturePt(pt);
-
- if (nearest.hit() || nearestEdge.hit() || isNearFeaturePt)
- {
- nStoppedInsertion++;
-
- if (!hits[procI].found(peI))
- {
- hits[procI].insert(peI);
- }
- }
- }
- }
-
- Pstream::listCombineGather(hits, plusEqOp<labelHashSet>());
- Pstream::listCombineScatter(hits);
-
- forAll(surfaceHits, eI)
- {
- if (!hits[Pstream::myProcNo()].found(eI))
- {
- synchronisedSurfLocations.append(surfaceHits[eI]);
- }
- }
-
- forAll(synchronisedSurfLocations, pI)
- {
- appendToSurfacePtTree
- (
- synchronisedSurfLocations[pI].first().hitPoint()
- );
- }
-
- const label nNotInserted = returnReduce(nStoppedInsertion, sumOp<label>());
-
- Info<< " Not inserting total of " << nNotInserted << " locations"
- << endl;
-
- surfaceHits = synchronisedSurfLocations;
-
- return nNotInserted;
-}
-
-
-Foam::label Foam::conformalVoronoiMesh::synchroniseEdgeTrees
-(
- pointIndexHitAndFeatureList& featureEdgeHits
-)
-{
- Info<< " Edge tree synchronisation" << endl;
-
- pointIndexHitAndFeatureDynList synchronisedEdgeLocations
- (
- featureEdgeHits.size()
- );
-
- List<pointIndexHitAndFeatureDynList> procEdgeLocations(Pstream::nProcs());
-
- procEdgeLocations[Pstream::myProcNo()] = featureEdgeHits;
-
- Pstream::gatherList(procEdgeLocations);
- Pstream::scatterList(procEdgeLocations);
-
- List<labelHashSet> hits(Pstream::nProcs());
-
- label nStoppedInsertion = 0;
-
- // Do the nearness tests here
- for (label procI = 0; procI < Pstream::nProcs(); ++procI)
- {
- // Skip own points
- if (procI >= Pstream::myProcNo())
- {
- continue;
- }
-
- pointIndexHitAndFeatureList& otherProcEdges = procEdgeLocations[procI];
-
- forAll(otherProcEdges, peI)
- {
- const Foam::point& pt = otherProcEdges[peI].first().hitPoint();
-
- pointIndexHit nearest;
- pointIsNearFeatureEdgeLocation(pt, nearest);
-
- bool isNearFeaturePt = nearFeaturePt(pt);
-
- if (nearest.hit() || isNearFeaturePt)
- {
- nStoppedInsertion++;
-
- if (!hits[procI].found(peI))
- {
- hits[procI].insert(peI);
- }
- }
- }
- }
-
- Pstream::listCombineGather(hits, plusEqOp<labelHashSet>());
- Pstream::listCombineScatter(hits);
-
- forAll(featureEdgeHits, eI)
- {
- if (!hits[Pstream::myProcNo()].found(eI))
- {
- synchronisedEdgeLocations.append(featureEdgeHits[eI]);
- }
- }
-
- forAll(synchronisedEdgeLocations, pI)
- {
- appendToEdgeLocationTree
- (
- synchronisedEdgeLocations[pI].first().hitPoint()
- );
- }
-
- const label nNotInserted = returnReduce(nStoppedInsertion, sumOp<label>());
-
- Info<< " Not inserting total of " << nNotInserted << " locations"
- << endl;
-
- featureEdgeHits = synchronisedEdgeLocations;
-
- return nNotInserted;
-}
-
-
-bool Foam::conformalVoronoiMesh::locationConformsToInside
-(
- const pointIndexHitAndFeature& info
-) const
-{
- bool keepLocation = true;
-
- if (info.first().hit())
- {
- vectorField norm(1);
-
- allGeometry_[info.second()].getNormal
- (
- List<pointIndexHit>(1, info.first()),
- norm
- );
-
- const vector& n = norm[0];
-
- const scalar ppDist = pointPairDistance(info.first().hitPoint());
-
- const Foam::point innerPoint = info.first().hitPoint() - ppDist*n;
-
- if (!geometryToConformTo_.inside(innerPoint))
- {
- keepLocation = false;
- }
- }
- else
- {
- keepLocation = false;
- }
-
- return keepLocation;
-}
-
-
-bool Foam::conformalVoronoiMesh::dualCellSurfaceAnyIntersection
-(
- const Delaunay::Finite_vertices_iterator& vit
-) const
-{
- std::list<Facet> facets;
- incident_facets(vit, std::back_inserter(facets));
-
- for
- (
- std::list<Facet>::iterator fit=facets.begin();
- fit != facets.end();
- ++fit
- )
- {
- if
- (
- is_infinite(fit->first)
- || is_infinite(fit->first->neighbor(fit->second))
- || !fit->first->hasInternalPoint()
- || !fit->first->neighbor(fit->second)->hasInternalPoint()
- )
- {
- continue;
- }
-
- Foam::point dE0 = fit->first->dual();
- Foam::point dE1 = fit->first->neighbor(fit->second)->dual();
-
- if (Pstream::parRun())
- {
- Foam::point& a = dE0;
- Foam::point& b = dE1;
-
- bool inProc = clipLineToProc(topoint(vit->point()), a, b);
-
- // Check for the edge passing through a surface
- if
- (
- inProc
- && geometryToConformTo_.findSurfaceAnyIntersection(a, b)
- )
- {
- return true;
- }
- }
- else
- {
- if (geometryToConformTo_.findSurfaceAnyIntersection(dE0, dE1))
- {
- return true;
- }
- }
- }
-
- return false;
-}
-
-
-bool Foam::conformalVoronoiMesh::dualCellSurfaceAllIntersections
-(
- const Delaunay::Finite_vertices_iterator& vit,
- pointIndexHitAndFeatureDynList& infoList
-) const
-{
- bool flagIntersection = false;
-
- std::list<Facet> facets;
- incident_facets(vit, std::back_inserter(facets));
-
- for
- (
- std::list<Facet>::iterator fit = facets.begin();
- fit != facets.end();
- ++fit
- )
- {
- if
- (
- is_infinite(fit->first)
- || is_infinite(fit->first->neighbor(fit->second))
- || !fit->first->hasInternalPoint()
- || !fit->first->neighbor(fit->second)->hasInternalPoint()
-// || fit->first->hasFarPoint()
-// || fit->first->neighbor(fit->second)->hasFarPoint()
- )
- {
- continue;
- }
-
- // Construct the dual edge and search for intersections of the edge
- // with the surface
- Foam::point dE0 = fit->first->dual();
- Foam::point dE1 = fit->first->neighbor(fit->second)->dual();
-
- pointIndexHit infoIntersection;
- label hitSurfaceIntersection = -1;
-
- if (Pstream::parRun())
- {
- bool inProc = clipLineToProc(topoint(vit->point()), dE0, dE1);
-
- if (!inProc)
- {
- continue;
- }
- }
-
- geometryToConformTo_.findSurfaceNearestIntersection
- (
- dE0,
- dE1,
- infoIntersection,
- hitSurfaceIntersection
- );
-
- if (infoIntersection.hit())
- {
- vectorField norm(1);
-
- allGeometry_[hitSurfaceIntersection].getNormal
- (
- List<pointIndexHit>(1, infoIntersection),
- norm
- );
-
- const vector& n = norm[0];
-
- pointFromPoint vertex = topoint(vit->point());
-
- const plane p(infoIntersection.hitPoint(), n);
-
- const plane::ray r(vertex, n);
-
- const scalar d = p.normalIntersect(r);
-
- const Foam::point newPoint = vertex + d*n;
-
- pointIndexHitAndFeature info;
-
- geometryToConformTo_.findSurfaceNearest
- (
- newPoint,
- surfaceSearchDistanceSqr(newPoint),
- info.first(),
- info.second()
- );
-
- bool rejectPoint = false;
-
- if (!locationConformsToInside(info))
- {
- rejectPoint = true;
- }
-
- if (!rejectPoint && info.first().hit())
- {
- if (!infoList.empty())
- {
- forAll(infoList, hitI)
- {
- // Reject point if the point is already added
- if
- (
- infoList[hitI].first().index()
- == info.first().index()
- )
- {
- rejectPoint = true;
- break;
- }
-
- const Foam::point& p
- = infoList[hitI].first().hitPoint();
-
- const scalar separationDistance =
- mag(p - info.first().hitPoint());
-
- const scalar minSepDist =
- sqr
- (
- cvMeshControls().removalDistCoeff()
- *targetCellSize(p)
- );
-
- // Reject the point if it is too close to another
- // surface point.
- // Could merge the points?
- if (separationDistance < minSepDist)
- {
- rejectPoint = true;
- break;
- }
- }
- }
- }
-
- // The normal ray from the vertex will not always result in a hit
- // because another surface may be in the way.
- if (!rejectPoint && info.first().hit())
- {
- flagIntersection = true;
- infoList.append(info);
- }
- }
- }
-
- return flagIntersection;
-}
-
-
-bool Foam::conformalVoronoiMesh::clipLineToProc
-(
- const Foam::point& pt,
- Foam::point& a,
- Foam::point& b
-) const
-{
- bool inProc = false;
-
- pointIndexHit findAnyIntersection = decomposition_().findLine(a, b);
-
- if (!findAnyIntersection.hit())
- {
- pointIndexHit info = decomposition_().findLine(a, pt);
-
- if (!info.hit())
- {
- inProc = true;
- }
- else
- {
- inProc = false;
- }
- }
- else
- {
- pointIndexHit info = decomposition_().findLine(a, pt);
-
- if (!info.hit())
- {
- inProc = true;
- b = findAnyIntersection.hitPoint();
- }
- else
- {
- inProc = true;
- a = findAnyIntersection.hitPoint();
- }
- }
-
- return inProc;
-}
-
-
-void Foam::conformalVoronoiMesh::dualCellLargestSurfaceProtrusion
-(
- const Delaunay::Finite_vertices_iterator& vit,
- pointIndexHit& surfHitLargest,
- label& hitSurfaceLargest
-) const
-{
- // Set no-hit data
- surfHitLargest = pointIndexHit();
- hitSurfaceLargest = -1;
-
- std::list<Facet> facets;
- finite_incident_facets(vit, std::back_inserter(facets));
-
- pointFromPoint vert = topoint(vit->point());
-
- scalar maxProtrusionDistance = maxSurfaceProtrusion(vert);
-
- for
- (
- std::list<Facet>::iterator fit = facets.begin();
- fit != facets.end();
- ++fit
- )
- {
- Cell_handle c1 = fit->first;
- Cell_handle c2 = fit->first->neighbor(fit->second);
-
- if
- (
- is_infinite(c1) || is_infinite(c2)
- || !c1->hasInternalPoint() || !c2->hasInternalPoint()
- || !c1->real() || !c2->real()
- )
- {
- continue;
- }
-
- Foam::point edgeMid = 0.5*(c1->dual() + c2->dual());
-
- pointIndexHit surfHit;
- label hitSurface;
-
- geometryToConformTo_.findSurfaceAnyIntersection
- (
- vert,
- edgeMid,
- surfHit,
- hitSurface
- );
-
- if (surfHit.hit())
- {
- vectorField norm(1);
-
- allGeometry_[hitSurface].getNormal
- (
- List<pointIndexHit>(1, surfHit),
- norm
- );
-
- const vector& n = norm[0];
-
- const scalar normalProtrusionDistance =
- (edgeMid - surfHit.hitPoint()) & n;
-
- if (normalProtrusionDistance > maxProtrusionDistance)
- {
- surfHitLargest = surfHit;
- hitSurfaceLargest = hitSurface;
-
- maxProtrusionDistance = normalProtrusionDistance;
- }
- }
- }
-
- // Relying on short-circuit evaluation to not call for hitPoint when this
- // is a miss
- if
- (
- surfHitLargest.hit()
- && !positionOnThisProc(surfHitLargest.hitPoint())
- )
- {
- // A protrusion was identified, but not penetrating on this processor,
- // so set no-hit data and allow the other that should have this point
- // referred to generate it.
- surfHitLargest = pointIndexHit();
- hitSurfaceLargest = -1;
- }
-}
-
-
-void Foam::conformalVoronoiMesh::dualCellLargestSurfaceIncursion
-(
- const Delaunay::Finite_vertices_iterator& vit,
- pointIndexHit& surfHitLargest,
- label& hitSurfaceLargest
-) const
-{
- // Set no-hit data
- surfHitLargest = pointIndexHit();
- hitSurfaceLargest = -1;
-
- std::list<Facet> facets;
- finite_incident_facets(vit, std::back_inserter(facets));
-
- pointFromPoint vert = topoint(vit->point());
-
- scalar minIncursionDistance = -maxSurfaceProtrusion(vert);
-
- for
- (
- std::list<Facet>::iterator fit = facets.begin();
- fit != facets.end();
- ++fit
- )
- {
- Cell_handle c1 = fit->first;
- Cell_handle c2 = fit->first->neighbor(fit->second);
-
- if
- (
- is_infinite(c1) || is_infinite(c2)
- || !c1->hasInternalPoint() || !c2->hasInternalPoint()
- || !c1->real() || !c2->real()
- )
- {
- continue;
- }
-
- Foam::point edgeMid = 0.5*(c1->dual() + c2->dual());
-
- pointIndexHit surfHit;
- label hitSurface;
-
- geometryToConformTo_.findSurfaceAnyIntersection
- (
- vert,
- edgeMid,
- surfHit,
- hitSurface
- );
-
- if (surfHit.hit())
- {
- vectorField norm(1);
-
- allGeometry_[hitSurface].getNormal
- (
- List<pointIndexHit>(1, surfHit),
- norm
- );
-
- const vector& n = norm[0];
-
- scalar normalIncursionDistance =
- (edgeMid - surfHit.hitPoint()) & n;
-
- if (normalIncursionDistance < minIncursionDistance)
- {
- surfHitLargest = surfHit;
- hitSurfaceLargest = hitSurface;
-
- minIncursionDistance = normalIncursionDistance;
-
- // Info<< nl << "# Incursion: " << endl;
- // meshTools::writeOBJ(Info, vert);
- // meshTools::writeOBJ(Info, edgeMid);
- // Info<< "l Na Nb" << endl;
- }
- }
- }
-
- // Relying on short-circuit evaluation to not call for hitPoint when this
- // is a miss
- if
- (
- surfHitLargest.hit()
- && !positionOnThisProc(surfHitLargest.hitPoint())
- )
- {
- // A protrusion was identified, but not penetrating on this processor,
- // so set no-hit data and allow the other that should have this point
- // referred to generate it.
- surfHitLargest = pointIndexHit();
- hitSurfaceLargest = -1;
- }
-}
-
-
-void Foam::conformalVoronoiMesh::reportProcessorOccupancy()
-{
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- vit++
- )
- {
- if (vit->real())
- {
- if (!positionOnThisProc(topoint(vit->point())))
- {
- Pout<< topoint(vit->point()) << " is not on this processor "
- << endl;
- }
- }
- }
-}
-
-
-//void Foam::conformalVoronoiMesh::reportSurfaceConformationQuality()
-//{
-// Info<< nl << "Check surface conformation quality" << endl;
-//
-// for
-// (
-// Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
-// vit != finite_vertices_end();
-// vit++
-// )
-// {
-// if (vit->internalOrBoundaryPoint())
-// {
-// Foam::point vert(topoint(vit->point()));
-// pointIndexHit surfHit;
-// label hitSurface;
-//
-// dualCellLargestSurfaceProtrusion(vit, surfHit, hitSurface);
-//
-// if (surfHit.hit())
-// {
-// Pout<< nl << "Residual penetration: " << nl
-// << vit->index() << nl
-// << vit->type() << nl
-// << vit->ppMaster() << nl
-// << "nearFeaturePt "
-// << nearFeaturePt(surfHit.hitPoint()) << nl
-// << vert << nl
-// << surfHit.hitPoint()
-// << endl;
-// }
-// }
-// }
-//
-// {
-// // Assess close surface points
-//
-// setVertexSizeAndAlignment();
-//
-// for
-// (
-// Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
-// vit != finite_vertices_end();
-// vit++
-// )
-// {
-// if (vit->ppMaster())
-// {
-// std::list<Vertex_handle> adjacentVertices;
-//
-// adjacent_vertices(vit, std::back_inserter(adjacentVertices));
-//
-// Foam::point pt = topoint(vit->point());
-//
-// // Pout<< nl << "vit: " << vit->index() << " "
-// // << topoint(vit->point())
-// // << endl;
-//
-// // Pout<< adjacentVertices.size() << endl;
-//
-// for
-// (
-// std::list<Vertex_handle>::iterator
-// avit = adjacentVertices.begin();
-// avit != adjacentVertices.end();
-// ++avit
-// )
-// {
-// Vertex_handle avh = *avit;
-//
-// // The lower indexed vertex will perform the assessment
-// if
-// (
-// avh->ppMaster()
-// && vit->index() < avh->index()
-// && vit->type() != avh->type()
-// )
-// {
-// scalar targetSize = 0.2*averageAnyCellSize(vit, avh);
-//
-// // Pout<< "diff " << mag(pt - topoint(avh->point()))
-// // << " " << targetSize << endl;
-//
-// if
-// (
-// magSqr(pt - topoint(avh->point()))
-// < sqr(targetSize)
-// )
-// {
-// Pout<< nl << "vit: " << vit->index() << " "
-// << topoint(vit->point())
-// << endl;
-//
-// Pout<< " adjacent too close: "
-// << avh->index() << " "
-// << topoint(avh->point())
-// << endl;
-// }
-// }
-// }
-// }
-// }
-// }
-//}
-
-void Foam::conformalVoronoiMesh::limitDisplacement
-(
- const Delaunay::Finite_vertices_iterator& vit,
- vector& displacement,
- label callCount
-) const
-{
- callCount++;
-
- // Do not allow infinite recursion
- if (callCount > 7)
- {
- return;
- }
-
- pointFromPoint pt = topoint(vit->point());
- Foam::point dispPt = pt + displacement;
-
- bool limit = false;
-
- pointIndexHit surfHit;
- label hitSurface;
-
- if (!geometryToConformTo_.globalBounds().contains(dispPt))
- {
- // If dispPt is outside bounding box then displacement cuts boundary
- limit = true;
- }
- else if (geometryToConformTo_.findSurfaceAnyIntersection(pt, dispPt))
- {
- // Full surface penetration test
- limit = true;
- }
- else
- {
- // Testing if the displaced position is too close to the surface.
- // Within twice the local surface point pair insertion distance is
- // considered "too close"
-
- scalar searchDistanceSqr = sqr
- (
- 2*vit->targetCellSize()
- *cvMeshControls().pointPairDistanceCoeff()
- );
-
- geometryToConformTo_.findSurfaceNearest
- (
- dispPt,
- searchDistanceSqr,
- surfHit,
- hitSurface
- );
-
- if (surfHit.hit())
- {
- limit = true;
-
- if (magSqr(pt - surfHit.hitPoint()) <= searchDistanceSqr)
- {
- // Cannot limit displacement, point closer than tolerance
- return;
- }
- }
- }
-
- if (limit)
- {
- // Halve the displacement and call this function again. Will continue
- // recursively until the displacement is small enough.
-
- displacement *= 0.5;
-
- limitDisplacement(vit, displacement, callCount);
- }
-}
-
-
-Foam::scalar Foam::conformalVoronoiMesh::angleBetweenSurfacePoints
-(
- Foam::point pA,
- Foam::point pB
-) const
-{
- pointIndexHit pAhit;
- label pAsurfaceHit = -1;
-
- const scalar searchDist = 5.0*targetCellSize(pA);
-
- geometryToConformTo_.findSurfaceNearest
- (
- pA,
- searchDist,
- pAhit,
- pAsurfaceHit
- );
-
- if (!pAhit.hit())
- {
- return constant::mathematical::pi;
- }
-
- vectorField norm(1);
-
- allGeometry_[pAsurfaceHit].getNormal
- (
- List<pointIndexHit>(1, pAhit),
- norm
- );
-
- const vector nA = norm[0];
-
- pointIndexHit pBhit;
- label pBsurfaceHit = -1;
-
- geometryToConformTo_.findSurfaceNearest
- (
- pB,
- searchDist,
- pBhit,
- pBsurfaceHit
- );
-
- if (!pBhit.hit())
- {
- return constant::mathematical::pi;
- }
-
- allGeometry_[pBsurfaceHit].getNormal
- (
- List<pointIndexHit>(1, pBhit),
- norm
- );
-
- const vector nB = norm[0];
-
- return vectorTools::cosPhi(nA, nB);
-}
-
-
-bool Foam::conformalVoronoiMesh::nearSurfacePoint
-(
- pointIndexHitAndFeature& pHit
-) const
-{
- const Foam::point& pt = pHit.first().hitPoint();
-
- pointIndexHit closePoint;
-
- const bool closeToSurfacePt = pointIsNearSurfaceLocation(pt, closePoint);
-
-// if
-// (
-// closeToSurfacePt
-// && mag(pt - closePoint.hitPoint()) > pointPairDistance(pt)
-// )
-// {
-// const scalar cosAngle
-// = angleBetweenSurfacePoints(pt, closePoint.hitPoint());
-//
-// // @todo make this tolerance run-time selectable?
-// if (cosAngle < searchAngleOppositeSurface)
-// {
-// pointIndexHit pCloseHit;
-// label pCloseSurfaceHit = -1;
-//
-// const scalar searchDist = targetCellSize(closePoint.hitPoint());
-//
-// if (searchDist < SMALL)
-// {
-// Pout<< "WARNING: SMALL CELL SIZE" << endl;
-// }
-//
-// geometryToConformTo_.findSurfaceNearest
-// (
-// closePoint.hitPoint(),
-// searchDist,
-// pCloseHit,
-// pCloseSurfaceHit
-// );
-//
-// vectorField norm(1);
-//
-// allGeometry_[pCloseSurfaceHit].getNormal
-// (
-// List<pointIndexHit>(1, pCloseHit),
-// norm
-// );
-//
-// const vector nA = norm[0];
-//
-// pointIndexHit oppositeHit;
-// label oppositeSurfaceHit = -1;
-//
-// geometryToConformTo_.findSurfaceNearestIntersection
-// (
-// closePoint.hitPoint() + SMALL*nA,
-// closePoint.hitPoint() + mag(pt - closePoint.hitPoint())*nA,
-// oppositeHit,
-// oppositeSurfaceHit
-// );
-//
-// if (oppositeHit.hit())
-// {
-// // Replace point
-// pHit.first() = oppositeHit;
-// pHit.second() = oppositeSurfaceHit;
-//
-// appendToSurfacePtTree(pHit.first().hitPoint());
-//
-// return !closeToSurfacePt;
-// }
-// }
-// }
-// else
- {
- appendToSurfacePtTree(pt);
- }
-
- return closeToSurfacePt;
-}
-
-
-bool Foam::conformalVoronoiMesh::appendToSurfacePtTree
-(
- const Foam::point& pt
-) const
-{
- label startIndex = existingSurfacePtLocations_.size();
-
- existingSurfacePtLocations_.append(pt);
-
- label endIndex = existingSurfacePtLocations_.size();
-
- return surfacePtLocationTreePtr_().insert(startIndex, endIndex);
-}
-
-
-bool Foam::conformalVoronoiMesh::appendToEdgeLocationTree
-(
- const Foam::point& pt
-) const
-{
- label startIndex = existingEdgeLocations_.size();
-
- existingEdgeLocations_.append(pt);
-
- label endIndex = existingEdgeLocations_.size();
-
- return edgeLocationTreePtr_().insert(startIndex, endIndex);
-}
-
-
-Foam::List<Foam::pointIndexHit>
-Foam::conformalVoronoiMesh::nearestFeatureEdgeLocations
-(
- const Foam::point& pt
-) const
-{
- const scalar exclusionRangeSqr = featureEdgeExclusionDistanceSqr(pt);
-
- labelList elems
- = edgeLocationTreePtr_().findSphere(pt, exclusionRangeSqr);
-
- DynamicList<pointIndexHit> dynPointHit;
-
- forAll(elems, elemI)
- {
- label index = elems[elemI];
-
- const Foam::point& pointI
- = edgeLocationTreePtr_().shapes().shapePoints()[index];
-
- pointIndexHit nearHit(true, pointI, index);
-
- dynPointHit.append(nearHit);
- }
-
- return dynPointHit;
-}
-
-
-bool Foam::conformalVoronoiMesh::pointIsNearFeatureEdgeLocation
-(
- const Foam::point& pt
-) const
-{
- const scalar exclusionRangeSqr = featureEdgeExclusionDistanceSqr(pt);
-
- pointIndexHit info
- = edgeLocationTreePtr_().findNearest(pt, exclusionRangeSqr);
-
- return info.hit();
-}
-
-
-bool Foam::conformalVoronoiMesh::pointIsNearFeatureEdgeLocation
-(
- const Foam::point& pt,
- pointIndexHit& info
-) const
-{
- const scalar exclusionRangeSqr = featureEdgeExclusionDistanceSqr(pt);
-
- info = edgeLocationTreePtr_().findNearest(pt, exclusionRangeSqr);
-
- return info.hit();
-}
-
-
-bool Foam::conformalVoronoiMesh::pointIsNearSurfaceLocation
-(
- const Foam::point& pt
-) const
-{
- pointIndexHit info;
-
- pointIsNearSurfaceLocation(pt, info);
-
- return info.hit();
-}
-
-
-bool Foam::conformalVoronoiMesh::pointIsNearSurfaceLocation
-(
- const Foam::point& pt,
- pointIndexHit& info
-) const
-{
- const scalar exclusionRangeSqr = surfacePtExclusionDistanceSqr(pt);
-
- info = surfacePtLocationTreePtr_().findNearest(pt, exclusionRangeSqr);
-
- return info.hit();
-}
-
-
-bool Foam::conformalVoronoiMesh::nearFeatureEdgeLocation
-(
- pointIndexHit& pHit
-) const
-{
- Foam::point pt = pHit.hitPoint();
-
- const scalar exclusionRangeSqr = featureEdgeExclusionDistanceSqr(pt);
-
- bool closeToFeatureEdge = pointIsNearFeatureEdgeLocation(pt);
-
- if (closeToFeatureEdge)
- {
- List<pointIndexHit> nearHits = nearestFeatureEdgeLocations(pt);
-
- forAll(nearHits, elemI)
- {
- pointIndexHit& info = nearHits[elemI];
-
- // Check if the edge location that the new edge location is near to
- // "might" be on a different edge. If so, add it anyway.
- pointIndexHit edgeHit;
- label featureHit = -1;
-
- geometryToConformTo_.findEdgeNearest
- (
- pt,
- exclusionRangeSqr,
- edgeHit,
- featureHit
- );
-
- const extendedFeatureEdgeMesh& eMesh
- = geometryToConformTo_.features()[featureHit];
-
- const vector& edgeDir = eMesh.edgeDirections()[edgeHit.index()];
-
- const vector lineBetweenPoints = pt - info.hitPoint();
-
- const scalar cosAngle
- = vectorTools::cosPhi(edgeDir, lineBetweenPoints);
-
- // Allow the point to be added if it is almost at right angles to
- // the other point. Also check it is not the same point.
- // Info<< cosAngle<< " "
- // << radToDeg(acos(cosAngle)) << " "
- // << searchConeAngle << " "
- // << radToDeg(acos(searchConeAngle)) << endl;
-
- if
- (
- mag(cosAngle) < searchConeAngle
- && (
- mag(lineBetweenPoints)
- > cvMeshControls().pointPairDistanceCoeff()*targetCellSize(pt)
- )
- )
- {
- pt = edgeHit.hitPoint();
- pHit.setPoint(pt);
- closeToFeatureEdge = false;
- }
- else
- {
- closeToFeatureEdge = true;
- break;
- }
- }
- }
-
- if (!closeToFeatureEdge)
- {
- appendToEdgeLocationTree(pt);
- }
-
- return closeToFeatureEdge;
-}
-
-
-void Foam::conformalVoronoiMesh::buildEdgeLocationTree
-(
- const DynamicList<Foam::point>& existingEdgeLocations
-) const
-{
- treeBoundBox overallBb
- (
- geometryToConformTo_.globalBounds().extend(rndGen_, 1e-4)
- );
-
- overallBb.min() -= Foam::point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
- overallBb.max() += Foam::point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
-
- edgeLocationTreePtr_.reset
- (
- new dynamicIndexedOctree<dynamicTreeDataPoint>
- (
- dynamicTreeDataPoint(existingEdgeLocations),
- overallBb, // overall search domain
- 10, // max levels, n/a
- 20.0, // maximum ratio of cubes v.s. cells
- 100.0 // max. duplicity; n/a since no bounding boxes.
- )
- );
-}
-
-
-void Foam::conformalVoronoiMesh::buildSurfacePtLocationTree
-(
- const DynamicList<Foam::point>& existingSurfacePtLocations
-) const
-{
- treeBoundBox overallBb
- (
- geometryToConformTo_.globalBounds().extend(rndGen_, 1e-4)
- );
-
- overallBb.min() -= Foam::point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
- overallBb.max() += Foam::point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
-
- surfacePtLocationTreePtr_.reset
- (
- new dynamicIndexedOctree<dynamicTreeDataPoint>
- (
- dynamicTreeDataPoint(existingSurfacePtLocations),
- overallBb, // overall search domain
- 10, // max levels, n/a
- 20.0, // maximum ratio of cubes v.s. cells
- 100.0 // max. duplicity; n/a since no bounding boxes.
- )
- );
-}
-
-
-void Foam::conformalVoronoiMesh::buildSizeAndAlignmentTree() const
-{
- if (sizeAndAlignmentLocations_.empty())
- {
- FatalErrorIn("buildSizeAndAlignmentTree()")
- << "sizeAndAlignmentLocations empty, must be populated before "
- << "sizeAndAlignmentTree can be built."
- << exit(FatalError);
- }
-
- treeBoundBox overallBb
- (
- geometryToConformTo_.globalBounds().extend(rndGen_, 1e-4)
- );
-
- overallBb.min() -= Foam::point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
- overallBb.max() += Foam::point(ROOTVSMALL, ROOTVSMALL, ROOTVSMALL);
-
- sizeAndAlignmentTreePtr_.reset
- (
- new indexedOctree<treeDataPoint>
- (
- treeDataPoint(sizeAndAlignmentLocations_),
- overallBb, // overall search domain
- 10, // max levels
- 20.0, // maximum ratio of cubes v.s. cells
- 100.0 // max. duplicity; n/a since no bounding boxes.
- )
- );
-}
-
-
-void Foam::conformalVoronoiMesh::addSurfaceAndEdgeHits
-(
- const Delaunay::Finite_vertices_iterator& vit,
- const pointIndexHitAndFeatureDynList& surfaceIntersections,
- scalar surfacePtReplaceDistCoeffSqr,
- scalar edgeSearchDistCoeffSqr,
- pointIndexHitAndFeatureDynList& surfaceHits,
- pointIndexHitAndFeatureDynList& featureEdgeHits
-) const
-{
- const scalar cellSize = targetCellSize(topoint(vit->point()));
- const scalar cellSizeSqr = sqr(cellSize);
-
- forAll(surfaceIntersections, sI)
- {
- pointIndexHitAndFeature surfHitI = surfaceIntersections[sI];
-
- bool keepSurfacePoint = true;
-
- if (!surfHitI.first().hit())
- {
- continue;
- }
-
- bool isNearFeaturePt = nearFeaturePt(surfHitI.first().hitPoint());
-
- bool isNearSurfacePt = nearSurfacePoint(surfHitI);
-
- if (isNearFeaturePt || isNearSurfacePt)
- {
- keepSurfacePoint = false;
- }
-
- List<List<pointIndexHit> > edHitsByFeature;
-
- labelList featuresHit;
-
- const scalar searchRadiusSqr = edgeSearchDistCoeffSqr*cellSizeSqr;
-
- geometryToConformTo_.findAllNearestEdges
- (
- surfHitI.first().hitPoint(),
- searchRadiusSqr,
- edHitsByFeature,
- featuresHit
- );
-
- forAll(edHitsByFeature, i)
- {
- const label featureHit = featuresHit[i];
-
- List<pointIndexHit>& edHits = edHitsByFeature[i];
-
- forAll(edHits, eHitI)
- {
- pointIndexHit& edHit = edHits[eHitI];
-
- if (edHit.hit())
- {
- const Foam::point& edPt = edHit.hitPoint();
-
- if (!nearFeaturePt(edPt))
- {
- if
- (
- magSqr(edPt - surfHitI.first().hitPoint())
- < surfacePtReplaceDistCoeffSqr*cellSizeSqr
- )
- {
- // If the point is within a given distance of a
- // feature edge, give control to edge control points
- // instead, this will prevent "pits" forming.
-
- keepSurfacePoint = false;
-
- // NEED TO REMOVE FROM THE SURFACE TREE...
-// surfacePtLocationTreePtr_().remove
-// (
-// existingSurfacePtLocations_.size() - 1
-// );
- }
-
- if
- (
- !nearFeatureEdgeLocation
- (
- edHit
- )
- )
- {
- // Do not place edge control points too close to a
- // feature point or existing edge control points
- featureEdgeHits.append
- (
- pointIndexHitAndFeature(edHit, featureHit)
- );
- }
- }
- }
- }
- }
-
- if (keepSurfacePoint)
- {
- surfaceHits.append(surfHitI);
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::storeSurfaceConformation()
-{
- Info<< nl << "Storing surface conformation" << endl;
-
- surfaceConformationVertices_.clear();
-
- // Use a temporary dynamic list to speed up insertion.
- DynamicList<Vb> tempSurfaceVertices(number_of_vertices()/10);
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- vit++
- )
- {
- // Store points that are not referred, part of a pair, but not feature
- // points
- if
- (
- !vit->referred()
- && vit->boundaryPoint()
- && !vit->featurePoint()
- )
- {
- tempSurfaceVertices.append
- (
- Vb
- (
- vit->point(),
- vit->type()
- )
- );
- }
- }
-
- tempSurfaceVertices.shrink();
-
- surfaceConformationVertices_.transfer(tempSurfaceVertices);
-
- Info<< " Stored "
- << returnReduce
- (
- label(surfaceConformationVertices_.size()),
- sumOp<label>()
- )
- << " vertices" << nl << endl;
-}
-
-
-void Foam::conformalVoronoiMesh::reinsertSurfaceConformation()
-{
- Info<< nl << "Reinserting stored surface conformation" << endl;
-
- const label preReinsertionSize(number_of_vertices());
-
- // It is assumed that the stored surface conformation is on the correct
- // processor and does not need distributed
- rangeInsertWithInfo
- (
- surfaceConformationVertices_.begin(),
- surfaceConformationVertices_.end(),
- true
- );
-
- const label nInserted = label(number_of_vertices()) - preReinsertionSize;
- const label nFailed = surfaceConformationVertices_.size() - nInserted;
-
- Info<< " " << returnReduce(nInserted, sumOp<label>())
- << " points reinserted, failed to insert "
- << returnReduce(nFailed, sumOp<label>())
- << endl;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshFeaturePointSpecialisations.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshFeaturePointSpecialisations.C
deleted file mode 100644
index 2f7579cbbff95339c341b32c9857ec82dcc100b0..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshFeaturePointSpecialisations.C
+++ /dev/null
@@ -1,436 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "conformalVoronoiMesh.H"
-#include "vectorTools.H"
-
-using namespace Foam::vectorTools;
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-Foam::List<Foam::extendedFeatureEdgeMesh::edgeStatus>
-Foam::conformalVoronoiMesh::calcPointFeatureEdgesTypes
-(
- const extendedFeatureEdgeMesh& feMesh,
- const labelList& pEds,
- pointFeatureEdgesTypes& pFEdgeTypes
-)
-{
- List<extendedFeatureEdgeMesh::edgeStatus> allEdStat(pEds.size());
-
- forAll(pEds, i)
- {
- label edgeI = pEds[i];
-
- extendedFeatureEdgeMesh::edgeStatus& eS = allEdStat[i];
-
- eS = feMesh.getEdgeStatus(edgeI);
-
- pFEdgeTypes(eS)++;
- }
-
- if (debug)
- {
- Info<< pFEdgeTypes << endl;
- }
-
- return allEdStat;
-}
-
-
-bool Foam::conformalVoronoiMesh::createSpecialisedFeaturePoint
-(
- const extendedFeatureEdgeMesh& feMesh,
- const labelList& pEds,
- const pointFeatureEdgesTypes& pFEdgesTypes,
- const List<extendedFeatureEdgeMesh::edgeStatus>& allEdStat,
- const label ptI,
- DynamicList<Vb>& pts
-)
-{
- if
- (
- !pFEdgesTypes.found(extendedFeatureEdgeMesh::EXTERNAL)
- || !pFEdgesTypes.found(extendedFeatureEdgeMesh::INTERNAL)
- )
- {
- return false;
- }
-
- if
- (
- pFEdgesTypes[extendedFeatureEdgeMesh::EXTERNAL] == 2
- && pFEdgesTypes[extendedFeatureEdgeMesh::INTERNAL] == 1
- && pEds.size() == 3
- )
- {
- Info<< "nExternal == 2 && nInternal == 1" << endl;
-
- const Foam::point& featPt = feMesh.points()[ptI];
-
- if (!positionOnThisProc(featPt))
- {
- return false;
- }
-
- label nVert = number_of_vertices();
-
- const label initialNumOfPoints = pts.size();
-
- const scalar ppDist = pointPairDistance(featPt);
-
- const vectorField& normals = feMesh.normals();
-
- const labelListList& edgeNormals = feMesh.edgeNormals();
-
- label concaveEdgeI = -1;
- labelList convexEdgesI(2, -1);
- label nConvex = 0;
-
- forAll(pEds, i)
- {
- const extendedFeatureEdgeMesh::edgeStatus& eS = allEdStat[i];
-
- if (eS == extendedFeatureEdgeMesh::INTERNAL)
- {
- concaveEdgeI = pEds[i];
- }
- else if (eS == extendedFeatureEdgeMesh::EXTERNAL)
- {
- convexEdgesI[nConvex++] = pEds[i];
- }
- else if (eS == extendedFeatureEdgeMesh::FLAT)
- {
- WarningIn("Foam::conformalVoronoiMesh::"
- "createSpecialisedFeaturePoint")
- << "Edge " << eS << " is flat"
- << endl;
- }
- else
- {
- FatalErrorIn("Foam::conformalVoronoiMesh::"
- "createSpecialisedFeaturePoint")
- << "Edge " << eS << " not concave/convex"
- << exit(FatalError);
- }
- }
-
- const vector& concaveEdgePlaneANormal =
- normals[edgeNormals[concaveEdgeI][0]];
-
- const vector& concaveEdgePlaneBNormal =
- normals[edgeNormals[concaveEdgeI][1]];
-
- // Intersect planes parallel to the concave edge planes offset
- // by ppDist and the plane defined by featPt and the edge vector.
- plane planeA
- (
- featPt + ppDist*concaveEdgePlaneANormal,
- concaveEdgePlaneANormal
- );
-
- plane planeB
- (
- featPt + ppDist*concaveEdgePlaneBNormal,
- concaveEdgePlaneBNormal
- );
-
- const vector& concaveEdgeDir = feMesh.edgeDirection
- (
- concaveEdgeI,
- ptI
- );
-
- // Todo,needed later but want to get rid of this.
- const Foam::point concaveEdgeLocalFeatPt =
- featPt + ppDist*concaveEdgeDir;
-
- // Finding the nearest point on the intersecting line to the edge
- // point. Floating point errors often occur using planePlaneIntersect
-
- plane planeF(concaveEdgeLocalFeatPt, concaveEdgeDir);
-
- const Foam::point concaveEdgeExternalPt = planeF.planePlaneIntersect
- (
- planeA,
- planeB
- );
-
- // Redefine planes to be on the feature surfaces to project through
-
- planeA = plane(featPt, concaveEdgePlaneANormal);
-
- planeB = plane(featPt, concaveEdgePlaneBNormal);
-
- const Foam::point internalPtA =
- concaveEdgeExternalPt
- - 2.0*planeA.distance(concaveEdgeExternalPt)
- *concaveEdgePlaneANormal;
-
- pts.append
- (
- Vb(internalPtA, Vb::vtInternalFeaturePoint)
- );
-
- const Foam::point internalPtB =
- concaveEdgeExternalPt
- - 2.0*planeB.distance(concaveEdgeExternalPt)
- *concaveEdgePlaneBNormal;
-
- pts.append
- (
- Vb(internalPtB, Vb::vtInternalFeaturePoint)
- );
-
- // Add the external points
-
- Foam::point externalPtD;
- Foam::point externalPtE;
-
- vector convexEdgePlaneCNormal(0,0,0);
- vector convexEdgePlaneDNormal(0,0,0);
-
- const labelList& concaveEdgeNormals = edgeNormals[concaveEdgeI];
- const labelList& convexEdgeANormals = edgeNormals[convexEdgesI[0]];
- const labelList& convexEdgeBNormals = edgeNormals[convexEdgesI[1]];
-
- forAll(concaveEdgeNormals, edgeNormalI)
- {
- bool convexEdgeA = false;
- bool convexEdgeB = false;
-
- forAll(convexEdgeANormals, edgeAnormalI)
- {
- const vector& concaveNormal
- = normals[concaveEdgeNormals[edgeNormalI]];
- const vector& convexNormal
- = normals[convexEdgeANormals[edgeAnormalI]];
-
- Info<< "Angle between vectors = "
- << degAngleBetween(concaveNormal, convexNormal) << endl;
-
- // Need a looser tolerance, because sometimes adjacent triangles
- // on the same surface will be slightly out of alignment.
- if (areParallel(concaveNormal, convexNormal, tolParallel))
- {
- convexEdgeA = true;
- }
- }
-
- forAll(convexEdgeBNormals, edgeBnormalI)
- {
- const vector& concaveNormal
- = normals[concaveEdgeNormals[edgeNormalI]];
- const vector& convexNormal
- = normals[convexEdgeBNormals[edgeBnormalI]];
-
- Info<< "Angle between vectors = "
- << degAngleBetween(concaveNormal, convexNormal) << endl;
-
- // Need a looser tolerance, because sometimes adjacent triangles
- // on the same surface will be slightly out of alignment.
- if (areParallel(concaveNormal, convexNormal, tolParallel))
- {
- convexEdgeB = true;
- }
- }
-
- if ((convexEdgeA && convexEdgeB) || (!convexEdgeA && !convexEdgeB))
- {
- WarningIn
- (
- "Foam::conformalVoronoiMesh"
- "::createSpecialisedFeaturePoint"
- )
- << "Both or neither of the convex edges share the concave "
- << "edge's normal."
- << " convexEdgeA = " << convexEdgeA
- << " convexEdgeB = " << convexEdgeB
- << endl;
-
- // Remove points that have just been added before returning
- for (label i = 0; i < 2; ++i)
- {
- pts.remove();
- nVert--;
- }
-
- return false;
- }
-
- if (convexEdgeA)
- {
- forAll(convexEdgeANormals, edgeAnormalI)
- {
- const vector& concaveNormal
- = normals[concaveEdgeNormals[edgeNormalI]];
- const vector& convexNormal
- = normals[convexEdgeANormals[edgeAnormalI]];
-
- if
- (
- !areParallel(concaveNormal, convexNormal, tolParallel)
- )
- {
- convexEdgePlaneCNormal = convexNormal;
-
- plane planeC(featPt, convexEdgePlaneCNormal);
-
- externalPtD =
- internalPtA
- + 2.0*planeC.distance(internalPtA)
- *convexEdgePlaneCNormal;
-
- pts.append
- (
- Vb(externalPtD, Vb::vtExternalFeaturePoint)
- );
- }
- }
- }
-
- if (convexEdgeB)
- {
- forAll(convexEdgeBNormals, edgeBnormalI)
- {
- const vector& concaveNormal
- = normals[concaveEdgeNormals[edgeNormalI]];
- const vector& convexNormal
- = normals[convexEdgeBNormals[edgeBnormalI]];
-
- if
- (
- !areParallel(concaveNormal, convexNormal, tolParallel)
- )
- {
- convexEdgePlaneDNormal = convexNormal;
-
- plane planeD(featPt, convexEdgePlaneDNormal);
-
- externalPtE =
- internalPtB
- + 2.0*planeD.distance(internalPtB)
- *convexEdgePlaneDNormal;
-
- pts.append
- (
- Vb(externalPtE, Vb::vtExternalFeaturePoint)
- );
- }
- }
- }
- }
-
- pts.append
- (
- Vb(concaveEdgeExternalPt, Vb::vtExternalFeaturePoint)
- );
-
- const scalar totalAngle = radToDeg
- (
- constant::mathematical::pi
- + radAngleBetween(concaveEdgePlaneANormal, concaveEdgePlaneBNormal)
- );
-
- if (totalAngle > cvMeshControls().maxQuadAngle())
- {
- // Add additional mitreing points
- //scalar angleSign = 1.0;
-
-
- vector convexEdgesPlaneNormal =
- 0.5*(convexEdgePlaneCNormal + convexEdgePlaneDNormal);
-
- plane planeM(featPt, convexEdgesPlaneNormal);
-
-// if
-// (
-// geometryToConformTo_.outside
-// (
-// featPt - convexEdgesPlaneNormal*ppDist
-// )
-// )
-// {
-// angleSign = -1.0;
-// }
-
-// scalar phi =
-// angleSign*acos(concaveEdgeDir & -convexEdgesPlaneNormal);
-//
-// scalar guard =
-// (
-// 1.0 + sin(phi)*ppDist/mag
-// (
-// concaveEdgeLocalFeatPt - concaveEdgeExternalPt
-// )
-// )/cos(phi) - 1.0;
-
- const Foam::point internalPtF =
- concaveEdgeExternalPt
- //+ (2.0 + guard)*(concaveEdgeLocalFeatPt - concaveEdgeExternalPt);
- + 2.0*(concaveEdgeLocalFeatPt - concaveEdgeExternalPt);
-
- pts.append
- (
- Vb(internalPtF, Vb::vtInternalFeaturePoint)
- );
-
- const Foam::point externalPtG =
- internalPtF
- + 2.0*planeM.distance(internalPtF)*convexEdgesPlaneNormal;
-
- pts.append
- (
- Vb(externalPtG, Vb::vtExternalFeaturePoint)
- );
- }
-
- if (debug)
- {
- for (label ptI = initialNumOfPoints; ptI < pts.size(); ++ptI)
- {
- Info<< "Point " << ptI << " : ";
- meshTools::writeOBJ(Info, topoint(pts[ptI].point()));
- }
- }
-
- return true;
- }
- else if
- (
- pFEdgesTypes[extendedFeatureEdgeMesh::EXTERNAL] == 1
- && pFEdgesTypes[extendedFeatureEdgeMesh::INTERNAL] == 2
- )
- {
- // Info<< "nExternal == 1 && nInternal == 2" << endl;
-
- return false;
- }
-
- return false;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshFeaturePoints.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshFeaturePoints.C
deleted file mode 100644
index 028dd5a0df09cf18f6e1a55b3fd3e6be08fbc1ad..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshFeaturePoints.C
+++ /dev/null
@@ -1,1235 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "conformalVoronoiMesh.H"
-#include "vectorTools.H"
-#include "triangle.H"
-#include "tetrahedron.H"
-#include "const_circulator.H"
-
-using namespace Foam::vectorTools;
-
-// * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * * //
-
-void Foam::conformalVoronoiMesh::createEdgePointGroup
-(
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
-)
-{
- label edgeI = edHit.index();
-
- extendedFeatureEdgeMesh::edgeStatus edStatus = feMesh.getEdgeStatus(edgeI);
-
- switch (edStatus)
- {
- case extendedFeatureEdgeMesh::EXTERNAL:
- {
- createExternalEdgePointGroup(feMesh, edHit, pts);
- break;
- }
- case extendedFeatureEdgeMesh::INTERNAL:
- {
- createInternalEdgePointGroup(feMesh, edHit, pts);
- break;
- }
- case extendedFeatureEdgeMesh::FLAT:
- {
- createFlatEdgePointGroup(feMesh, edHit, pts);
- break;
- }
- case extendedFeatureEdgeMesh::OPEN:
- {
- createOpenEdgePointGroup(feMesh, edHit, pts);
- break;
- }
- case extendedFeatureEdgeMesh::MULTIPLE:
- {
- createMultipleEdgePointGroup(feMesh, edHit, pts);
- break;
- }
- case extendedFeatureEdgeMesh::NONE:
- {
- break;
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::createExternalEdgePointGroup
-(
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
-)
-{
- const Foam::point& edgePt = edHit.hitPoint();
-
- scalar ppDist = pointPairDistance(edgePt);
-
- const vectorField& feNormals = feMesh.normals();
- const labelList& edNormalIs = feMesh.edgeNormals()[edHit.index()];
-
- // As this is an external edge, there are two normals by definition
- const vector& nA = feNormals[edNormalIs[0]];
- const vector& nB = feNormals[edNormalIs[1]];
-
- if (areParallel(nA, nB))
- {
- // The normals are nearly parallel, so this is too sharp a feature to
- // conform to.
- return;
- }
-
- // Normalised distance of reference point from edge point
- vector refVec((nA + nB)/(1 + (nA & nB)));
-
- if (magSqr(refVec) > sqr(5.0))
- {
- // Limit the size of the conformation
- ppDist *= 5.0/mag(refVec);
-
- // Pout<< nl << "createExternalEdgePointGroup limit "
- // << "edgePt " << edgePt << nl
- // << "refVec " << refVec << nl
- // << "mag(refVec) " << mag(refVec) << nl
- // << "ppDist " << ppDist << nl
- // << "nA " << nA << nl
- // << "nB " << nB << nl
- // << "(nA & nB) " << (nA & nB) << nl
- // << endl;
- }
-
- // Convex. So refPt will be inside domain and hence a master point
- Foam::point refPt = edgePt - ppDist*refVec;
-
- // Result when the points are eventually inserted.
- // Add number_of_vertices() at insertion of first vertex to all numbers:
- // pt index type
- // refPt 0 1
- // reflectedA 1 0
- // reflectedB 2 0
-
- // Insert the master point pairing the the first slave
-
- if (!geometryToConformTo_.inside(refPt))
- {
- return;
- }
-
- pts.append
- (
- Vb(refPt, Vb::vtInternalFeatureEdge)
- );
-
- // Insert the slave points by reflecting refPt in both faces.
- // with each slave refering to the master
-
- Foam::point reflectedA = refPt + 2*ppDist*nA;
- pts.append
- (
- Vb(reflectedA, Vb::vtExternalFeatureEdge)
- );
-
- Foam::point reflectedB = refPt + 2*ppDist*nB;
- pts.append
- (
- Vb(reflectedB, Vb::vtExternalFeatureEdge)
- );
-}
-
-
-void Foam::conformalVoronoiMesh::createInternalEdgePointGroup
-(
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
-)
-{
- const Foam::point& edgePt = edHit.hitPoint();
-
- scalar ppDist = pointPairDistance(edgePt);
-
- const vectorField& feNormals = feMesh.normals();
- const labelList& edNormalIs = feMesh.edgeNormals()[edHit.index()];
-
- // As this is an external edge, there are two normals by definition
- const vector& nA = feNormals[edNormalIs[0]];
- const vector& nB = feNormals[edNormalIs[1]];
-
- if (areParallel(nA, nB))
- {
- // The normals are nearly parallel, so this is too sharp a feature to
- // conform to.
-
- return;
- }
-
- // Normalised distance of reference point from edge point
- vector refVec((nA + nB)/(1 + (nA & nB)));
-
- if (magSqr(refVec) > sqr(5.0))
- {
- // Limit the size of the conformation
- ppDist *= 5.0/mag(refVec);
-
- // Pout<< nl << "createInternalEdgePointGroup limit "
- // << "edgePt " << edgePt << nl
- // << "refVec " << refVec << nl
- // << "mag(refVec) " << mag(refVec) << nl
- // << "ppDist " << ppDist << nl
- // << "nA " << nA << nl
- // << "nB " << nB << nl
- // << "(nA & nB) " << (nA & nB) << nl
- // << endl;
- }
-
- // Concave. master and reflected points inside the domain.
- Foam::point refPt = edgePt - ppDist*refVec;
-
- // Generate reflected master to be outside.
- Foam::point reflMasterPt = refPt + 2*(edgePt - refPt);
-
- // Reflect reflMasterPt in both faces.
- Foam::point reflectedA = reflMasterPt - 2*ppDist*nA;
-
- Foam::point reflectedB = reflMasterPt - 2*ppDist*nB;
-
- scalar totalAngle =
- radToDeg(constant::mathematical::pi + radAngleBetween(nA, nB));
-
- // Number of quadrants the angle should be split into
- int nQuads = int(totalAngle/cvMeshControls().maxQuadAngle()) + 1;
-
- // The number of additional master points needed to obtain the
- // required number of quadrants.
- int nAddPoints = min(max(nQuads - 2, 0), 2);
-
- // Add number_of_vertices() at insertion of first vertex to all numbers:
- // Result for nAddPoints 1 when the points are eventually inserted
- // pt index type
- // reflectedA 0 2
- // reflectedB 1 2
- // reflMasterPt 2 0
-
- // Result for nAddPoints 1 when the points are eventually inserted
- // pt index type
- // reflectedA 0 3
- // reflectedB 1 3
- // refPt 2 3
- // reflMasterPt 3 0
-
- // Result for nAddPoints 2 when the points are eventually inserted
- // pt index type
- // reflectedA 0 4
- // reflectedB 1 4
- // reflectedAa 2 4
- // reflectedBb 3 4
- // reflMasterPt 4 0
-
- if
- (
- !geometryToConformTo_.inside(reflectedA)
- || !geometryToConformTo_.inside(reflectedB)
- )
- {
- return;
- }
-
- // Master A is inside.
- pts.append
- (
- Vb(reflectedA, Vb::vtInternalFeatureEdge)
- );
-
- // Master B is inside.
- pts.append
- (
- Vb(reflectedB, Vb::vtInternalFeatureEdge)
- );
-
- if (nAddPoints == 1)
- {
- // One additinal point is the reflection of the slave point,
- // i.e. the original reference point
- pts.append
- (
- Vb(refPt, Vb::vtInternalFeatureEdge)
- );
- }
- else if (nAddPoints == 2)
- {
- Foam::point reflectedAa = refPt + ppDist*nB;
- pts.append
- (
- Vb(reflectedAa, Vb::vtInternalFeatureEdge)
- );
-
- Foam::point reflectedBb = refPt + ppDist*nA;
- pts.append
- (
- Vb(reflectedBb, Vb::vtInternalFeatureEdge)
- );
- }
-
- // Slave is outside.
- pts.append
- (
- Vb(reflMasterPt, Vb::vtExternalFeatureEdge)
- );
-}
-
-
-void Foam::conformalVoronoiMesh::createFlatEdgePointGroup
-(
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
-)
-{
- const Foam::point& edgePt = edHit.hitPoint();
-
- const scalar ppDist = pointPairDistance(edgePt);
-
- const vectorField& feNormals = feMesh.normals();
- const labelList& edNormalIs = feMesh.edgeNormals()[edHit.index()];
-
- // As this is a flat edge, there are two normals by definition
- const vector& nA = feNormals[edNormalIs[0]];
- const vector& nB = feNormals[edNormalIs[1]];
-
- // Average normal to remove any bias to one side, although as this
- // is a flat edge, the normals should be essentially the same
- const vector n = 0.5*(nA + nB);
-
- // Direction along the surface to the control point, sense of edge
- // direction not important, as +s and -s can be used because this
- // is a flat edge
- vector s = ppDist*(feMesh.edgeDirections()[edHit.index()] ^ n);
-
- createPointPair(ppDist, edgePt + s, n, pts);
- createPointPair(ppDist, edgePt - s, n, pts);
-}
-
-
-void Foam::conformalVoronoiMesh::createOpenEdgePointGroup
-(
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
-)
-{
-// // Assume it is a baffle and insert flat edge point pairs
-// const Foam::point& edgePt = edHit.hitPoint();
-//
-// const scalar ppDist = pointPairDistance(edgePt);
-//
-// const vectorField& feNormals = feMesh.normals();
-// const labelList& edNormalIs = feMesh.edgeNormals()[edHit.index()];
-//
-// // As this is a flat edge, there are two normals by definition
-// const vector& nA = feNormals[edNormalIs[0]];
-// const vector& nB = feNormals[edNormalIs[1]];
-//
-// // Average normal to remove any bias to one side, although as this
-// // is a flat edge, the normals should be essentially the same
-// const vector n = 0.5*(nA + nB);
-//
-// // Direction along the surface to the control point, sense of edge
-// // direction not important, as +s and -s can be used because this
-// // is a flat edge
-// vector s = ppDist*(feMesh.edgeDirections()[edHit.index()] ^ n);
-//
-// createBafflePointPair(ppDist, edgePt + s, n, pts);
-// createBafflePointPair(ppDist, edgePt - s, n, pts);
-
- Info<< "NOT INSERTING OPEN EDGE POINT GROUP, NOT IMPLEMENTED" << endl;
-}
-
-
-void Foam::conformalVoronoiMesh::createMultipleEdgePointGroup
-(
- const extendedFeatureEdgeMesh& feMesh,
- const pointIndexHit& edHit,
- DynamicList<Vb>& pts
-)
-{
- Info<< "NOT INSERTING MULTIPLE EDGE POINT GROUP, NOT IMPLEMENTED" << endl;
-}
-
-
-void Foam::conformalVoronoiMesh::reinsertFeaturePoints(bool distribute)
-{
- Info<< nl << "Reinserting stored feature points" << endl;
-
- label preReinsertionSize(number_of_vertices());
-
- insertPoints(featureVertices_, distribute);
-
- const label nReinserted = returnReduce
- (
- label(number_of_vertices()) - preReinsertionSize,
- sumOp<label>()
- );
-
- Info<< " Reinserted " << nReinserted << " vertices" << endl;
-}
-
-
-void Foam::conformalVoronoiMesh::createMixedFeaturePoints
-(
- DynamicList<Vb>& pts
-)
-{
- if (cvMeshControls().mixedFeaturePointPPDistanceCoeff() < 0)
- {
- Info<< nl << "Skipping specialised handling for mixed feature points"
- << endl;
- return;
- }
-
- const PtrList<extendedFeatureEdgeMesh>& feMeshes
- (
- geometryToConformTo_.features()
- );
-
- forAll(feMeshes, i)
- {
- const extendedFeatureEdgeMesh& feMesh = feMeshes[i];
- const labelListList& pointsEdges = feMesh.pointEdges();
- const pointField& points = feMesh.points();
-
- for
- (
- label ptI = feMesh.mixedStart();
- ptI < feMesh.nonFeatureStart();
- ptI++
- )
- {
- const Foam::point& featPt = points[ptI];
-
- if (!positionOnThisProc(featPt))
- {
- continue;
- }
-
- const labelList& pEds = pointsEdges[ptI];
-
- pointFeatureEdgesTypes pFEdgeTypes(ptI);
-
- const List<extendedFeatureEdgeMesh::edgeStatus> allEdStat
- = calcPointFeatureEdgesTypes(feMesh, pEds, pFEdgeTypes);
-
- bool specialisedSuccess = false;
-
- if (cvMeshControls().specialiseFeaturePoints())
- {
- specialisedSuccess = createSpecialisedFeaturePoint
- (
- feMesh, pEds, pFEdgeTypes, allEdStat, ptI, pts
- );
- }
-
- if (!specialisedSuccess)
- {
- // Specialisations available for some mixed feature points. For
- // non-specialised feature points, inserting mixed internal and
- // external edge groups at feature point.
-
- // Skipping unsupported mixed feature point types
- bool skipEdge = false;
-
- forAll(pEds, e)
- {
- const label edgeI = pEds[e];
-
- const extendedFeatureEdgeMesh::edgeStatus edStatus
- = feMesh.getEdgeStatus(edgeI);
-
- if
- (
- edStatus == extendedFeatureEdgeMesh::OPEN
- || edStatus == extendedFeatureEdgeMesh::MULTIPLE
- )
- {
- Info<< "Edge type " << edStatus
- << " found for mixed feature point " << ptI
- << ". Not supported."
- << endl;
-
- skipEdge = true;
- }
- }
-
- if (skipEdge)
- {
- Info<< "Skipping point " << ptI << nl << endl;
-
- continue;
- }
-
-// createFeaturePoints(feMesh, ptI, pts, types);
-
- const Foam::point pt = points[ptI];
-
- const scalar edgeGroupDistance = mixedFeaturePointDistance(pt);
-
- forAll(pEds, e)
- {
- const label edgeI = pEds[e];
-
- const Foam::point edgePt =
- pt + edgeGroupDistance*feMesh.edgeDirection(edgeI, ptI);
-
- const pointIndexHit edgeHit(true, edgePt, edgeI);
-
- createEdgePointGroup(feMesh, edgeHit, pts);
- }
- }
- }
- }
-}
-//
-//
-//void Foam::conformalVoronoiMesh::createFeaturePoints
-//(
-// DynamicList<Foam::point>& pts,
-// DynamicList<label>& indices,
-// DynamicList<label>& types
-//)
-//{
-// const PtrList<extendedFeatureEdgeMesh>& feMeshes
-// (
-// geometryToConformTo_.features()
-// );
-//
-// forAll(feMeshes, i)
-// {
-// const extendedFeatureEdgeMesh& feMesh(feMeshes[i]);
-//
-// for
-// (
-// label ptI = feMesh.convexStart();
-// ptI < feMesh.mixedStart();
-// ++ptI
-// )
-// {
-// const Foam::point& featPt = feMesh.points()[ptI];
-//
-// if (!positionOnThisProc(featPt))
-// {
-// continue;
-// }
-//
-// const scalar searchRadiusSqr = 5.0*targetCellSize(featPt);
-//
-// labelList indices = surfacePtLocationTreePtr_().findSphere
-// (
-// featPt,
-// searchRadiusSqr
-// );
-//
-// pointField nearestSurfacePoints(indices.size());
-//
-// forAll(indices, pI)
-// {
-// nearestSurfacePoints[pI] =
-// surfaceConformationVertices_[indices[pI]];
-// }
-//
-// forAll(feMesh.)
-//
-// // Now find the nearest points within the edge cones.
-//
-// // Calculate preliminary surface point locations
-//
-//
-// }
-// }
-//}
-
-
-void Foam::conformalVoronoiMesh::insertFeaturePoints()
-{
- Info<< nl << "Conforming to feature points" << endl;
-
- DynamicList<Vb> pts;
-
- const label preFeaturePointSize = number_of_vertices();
-
- createFeaturePoints(pts);
-
- createMixedFeaturePoints(pts);
-
- // Points added using the createEdgePointGroup function will be labelled as
- // internal/external feature edges. Relabel them as feature points,
- // otherwise they are inserted as both feature points and surface points.
- forAll(pts, pI)
- {
- Vb& pt = pts[pI];
-
- if (pt.featureEdgePoint())
- {
- if (pt.internalBoundaryPoint())
- {
- pt.type() = Vb::vtInternalFeaturePoint;
- }
- else if (pt.externalBoundaryPoint())
- {
- pt.type() = Vb::vtExternalFeaturePoint;
- }
- }
- }
-
- // Insert the created points, distributing to the appropriate processor
- insertPoints(pts, true);
-
- if (cvMeshControls().objOutput())
- {
- writePoints("featureVertices.obj", pts);
- }
-
- label nFeatureVertices = number_of_vertices() - preFeaturePointSize;
-
- if (Pstream::parRun())
- {
- reduce(nFeatureVertices, sumOp<label>());
- }
-
- if (nFeatureVertices > 0)
- {
- Info<< " Inserted " << nFeatureVertices
- << " feature vertices" << endl;
- }
-
- featureVertices_.clear();
- featureVertices_.setSize(pts.size());
-
- forAll(pts, pI)
- {
- featureVertices_[pI] = pts[pI];
- }
-
- constructFeaturePointLocations();
-}
-
-
-void Foam::conformalVoronoiMesh::constructFeaturePointLocations()
-{
- DynamicList<Foam::point> ftPtLocs;
-
- const PtrList<extendedFeatureEdgeMesh>& feMeshes
- (
- geometryToConformTo_.features()
- );
-
- forAll(feMeshes, i)
- {
- const extendedFeatureEdgeMesh& feMesh(feMeshes[i]);
-
- if (cvMeshControls().mixedFeaturePointPPDistanceCoeff() < 0)
- {
- // Ignoring mixed feature points
- for
- (
- label ptI = feMesh.convexStart();
- ptI < feMesh.mixedStart();
- ptI++
- )
- {
- ftPtLocs.append(feMesh.points()[ptI]);
- }
- }
- else
- {
- for
- (
- label ptI = feMesh.convexStart();
- ptI < feMesh.nonFeatureStart();
- ptI++
- )
- {
- ftPtLocs.append(feMesh.points()[ptI]);
- }
- }
- }
-
- featurePointLocations_.transfer(ftPtLocs);
-}
-
-
-Foam::List<Foam::pointIndexHit>
-Foam::conformalVoronoiMesh::findSurfacePtLocationsNearFeaturePoint
-(
- const Foam::point& featurePoint
-) const
-{
- DynamicList<pointIndexHit> dynPointList;
-
- const scalar searchRadiusSqr = 3*targetCellSize(featurePoint);
-
- labelList surfacePtList = surfacePtLocationTreePtr_().findSphere
- (
- featurePoint,
- searchRadiusSqr
- );
-
- forAll(surfacePtList, elemI)
- {
- label index = surfacePtList[elemI];
-
- const Foam::point& p
- = surfacePtLocationTreePtr_().shapes().shapePoints()[index];
-
- pointIndexHit nearHit(true, p, index);
-
- dynPointList.append(nearHit);
- }
-
- return dynPointList.shrink();
-}
-
-
-void Foam::conformalVoronoiMesh::addMasterAndSlavePoints
-(
- const DynamicList<Foam::point>& masterPoints,
- const DynamicList<Foam::indexedVertexEnum::vertexType>& masterPointsTypes,
- const Map<DynamicList<autoPtr<plane> > >& masterPointReflections,
- DynamicList<Vb>& pts,
- const label ptI
-) const
-{
- typedef DynamicList<autoPtr<plane> > planeDynList;
- typedef Foam::indexedVertexEnum::vertexType vertexType;
-
- forAll(masterPoints, pI)
- {
- // Append master to the list of points
-
-// OFstream strMasters("fpm_" + name(ptI) + ".obj");
-// OFstream strSlaves("fps_" + name(ptI) + ".obj");
-
- const Foam::point& masterPt = masterPoints[pI];
- const vertexType masterType = masterPointsTypes[pI];
-
- pts.append
- (
- Vb
- (
- masterPt,
- masterType
- )
- );
-
-// meshTools::writeOBJ(strMasters, masterPt);
-
- const planeDynList& masterPointPlanes = masterPointReflections[pI];
-
- forAll(masterPointPlanes, planeI)
- {
- // Reflect master points in the planes and insert the slave points
-
- const plane& reflPlane = masterPointPlanes[planeI]();
-
- const Foam::point slavePt =
- reflectPointInPlane(masterPt, reflPlane);
-
- const vertexType slaveType =
- (
- masterType == Vb::vtInternalFeaturePoint
- ? Vb::vtExternalFeaturePoint // true
- : Vb::vtInternalFeaturePoint // false
- );
-
- pts.append
- (
- Vb
- (
- slavePt,
- slaveType
- )
- );
-
-// meshTools::writeOBJ(strSlaves, slavePt);
- }
- }
-}
-
-
-Foam::label Foam::conformalVoronoiMesh::getSign
-(
- const extendedFeatureEdgeMesh::edgeStatus eStatus
-) const
-{
- if (eStatus == extendedFeatureEdgeMesh::EXTERNAL)
- {
- return -1;
- }
- else if (eStatus == extendedFeatureEdgeMesh::INTERNAL)
- {
- return 1;
- }
-
- return 0;
-}
-
-
-void Foam::conformalVoronoiMesh::createMasterAndSlavePoints
-(
- const extendedFeatureEdgeMesh& feMesh,
- const label ptI,
- DynamicList<Vb>& pts
-) const
-{
- typedef DynamicList<autoPtr<plane> > planeDynList;
- typedef Foam::indexedVertexEnum::vertexType vertexType;
- typedef Foam::extendedFeatureEdgeMesh::edgeStatus edgeStatus;
-
- const Foam::point& featPt = feMesh.points()[ptI];
-
- if (!positionOnThisProc(featPt))
- {
- return;
- }
-
- const scalar ppDist = pointPairDistance(featPt);
-
- // Maintain a list of master points and the planes to relect them in
- DynamicList<Foam::point> masterPoints;
- DynamicList<vertexType> masterPointsTypes;
- Map<planeDynList> masterPointReflections;
-
- const labelList& featPtEdges = feMesh.featurePointEdges()[ptI];
-
- const_circulator<labelList> circ(featPtEdges);
-
-// Info<< "Point = " << ptI << endl;
-
- // Loop around the edges of the feature point
- if (circ.size()) do
- {
-// const edgeStatus eStatusPrev = feMesh.getEdgeStatus(circ.prev());
- const edgeStatus eStatusCurr = feMesh.getEdgeStatus(circ());
-// const edgeStatus eStatusNext = feMesh.getEdgeStatus(circ.next());
-
-// Info<< "Prev = "
-// << extendedFeatureEdgeMesh::edgeStatusNames_[eStatusPrev]
-// << " Curr = "
-// << extendedFeatureEdgeMesh::edgeStatusNames_[eStatusCurr]
-//// << " Next = "
-//// << extendedFeatureEdgeMesh::edgeStatusNames_[eStatusNext]
-// << endl;
-
- // Get the direction in which to move the point in relation to the
- // feature point
- label sign = getSign(eStatusCurr);
-
- const vector n = sharedFaceNormal(feMesh, circ(), circ.next());
-
- const vector pointMotionDirection = sign*0.5*ppDist*n;
-
- if (masterPoints.empty())
- {
- // Initialise with the first master point
-
- Foam::point pt = featPt + pointMotionDirection;
-
- planeDynList firstPlane;
- firstPlane.append(autoPtr<plane>(new plane(featPt, n)));
-
- masterPoints.append(pt);
-
- masterPointsTypes.append
- (
- sign == 1
- ? Vb::vtExternalFeaturePoint // true
- : Vb::vtInternalFeaturePoint // false
- );
-
- if
- (
- masterPointsTypes.last() == Vb::vtInternalFeaturePoint
- && !geometryToConformTo_.inside(masterPoints.last())
- )
- {
- return;
- }
-
- const Foam::point reflectedPoint = reflectPointInPlane
- (
- masterPoints.last(),
- firstPlane.last()()
- );
-
- if
- (
- masterPointsTypes.last() == Vb::vtExternalFeaturePoint
- && !geometryToConformTo_.inside(reflectedPoint)
- )
- {
- return;
- }
-
- masterPointReflections.insert
- (
- masterPoints.size() - 1,
- firstPlane
- );
- }
-// else if
-// (
-// eStatusPrev == extendedFeatureEdgeMesh::INTERNAL
-// && eStatusCurr == extendedFeatureEdgeMesh::EXTERNAL
-// )
-// {
-// // Insert a new master point.
-// Foam::point pt = featPt + pointMotionDirection;
-//
-// planeDynList firstPlane;
-// firstPlane.append(autoPtr<plane>(new plane(featPt, n)));
-//
-// masterPoints.append(pt);
-//
-// masterPointsTypes.append
-// (
-// sign == 1
-// ? Vb::vtExternalFeaturePoint // true
-// : Vb::vtInternalFeaturePoint // false
-// );
-//
-// masterPointReflections.insert
-// (
-// masterPoints.size() - 1,
-// firstPlane
-// );
-// }
-// else if
-// (
-// eStatusPrev == extendedFeatureEdgeMesh::EXTERNAL
-// && eStatusCurr == extendedFeatureEdgeMesh::INTERNAL
-// )
-// {
-//
-// }
- else
- {
- // Just add this face contribution to the latest master point
-
- masterPoints.last() += pointMotionDirection;
-
- masterPointReflections[masterPoints.size() - 1].append
- (
- autoPtr<plane>(new plane(featPt, n))
- );
- }
-
- } while (circ.circulate(CirculatorBase::CLOCKWISE));
-
- addMasterAndSlavePoints
- (
- masterPoints,
- masterPointsTypes,
- masterPointReflections,
- pts,
- ptI
- );
-}
-
-
-void Foam::conformalVoronoiMesh::createFeaturePoints(DynamicList<Vb>& pts)
-{
- const PtrList<extendedFeatureEdgeMesh>& feMeshes
- (
- geometryToConformTo_.features()
- );
-
- forAll(feMeshes, i)
- {
- Info<< indent << "Edge mesh = " << feMeshes[i].name() << nl << endl;
-
- const extendedFeatureEdgeMesh& feMesh(feMeshes[i]);
-
- for
- (
- label ptI = feMesh.convexStart();
- ptI < feMesh.mixedStart();
- ptI++
- )
- {
- createMasterAndSlavePoints(feMesh, ptI, pts);
- }
- }
-}
-
-
-//Foam::scalar Foam::conformalVoronoiMesh::pyramidVolume
-//(
-// const Foam::point& apex,
-// const Foam::point& a,
-// const Foam::point& b,
-// const Foam::point& c,
-// const bool printInfo
-//) const
-//{
-// triPointRef tri(a, b, c);
-//
-// tetPointRef tet(tri.a(), tri.b(), tri.c(), apex);
-//
-// scalar volume = tet.mag();
-//
-//// scalar volume = (1.0/3.0)*constant::mathematical::pi;
-////
-//// K::Circle_3 circle(toPoint(a), toPoint(b), toPoint(c));
-////
-//// scalar height = mag(topoint(circle.center()) - apex);
-////
-//// volume *= circle.squared_radius()*height;
-//
-// if (printInfo)
-// {
-// Info<< "Calculating volume of pyramid..." << nl
-// << " Apex : " << apex << nl
-// << " Point a : " << a << nl
-// << " Point b : " << b << nl
-// << " Point c : " << c << nl
-// << " Center : " << tri.centre() << nl
-// << " Volume : " << volume << endl;
-// }
-//
-// return volume;
-//}
-
-
-//void Foam::conformalVoronoiMesh::createPyramidMasterPoint
-//(
-// const Foam::point& apex,
-// const vectorField& edgeDirections,
-// Foam::point& masterPoint,
-// vectorField& norms
-//) const
-//{
-// pointField basePoints(edgeDirections.size() + 1);
-//
-// forAll(edgeDirections, eI)
-// {
-// basePoints[eI] = edgeDirections[eI] + apex;
-// }
-//
-// basePoints[edgeDirections.size() + 1] = apex;
-//
-// face f(identity(edgeDirections.size()));
-//
-// pyramidPointFaceRef p(f, apex);
-//
-// const scalar ppDist = pointPairDistance(apex);
-//
-//
-// vector unitDir = f.centre();
-// unitDir /= mag(unitDir);
-//
-// masterPoint = apex + ppDist*unitDir;
-//
-// norms.setSize(edgeDirections.size());
-//
-// forAll(norms, nI)
-// {
-// norms[nI] =
-// }
-//}
-
-
-//void Foam::conformalVoronoiMesh::createConvexConcaveFeaturePoints
-//(
-// DynamicList<Foam::point>& pts,
-// DynamicList<label>& indices,
-// DynamicList<label>& types
-//)
-//{
-// const PtrList<extendedFeatureEdgeMesh>& feMeshes
-// (
-// geometryToConformTo_.features()
-// );
-//
-// forAll(feMeshes, i)
-// {
-// const extendedFeatureEdgeMesh& feMesh(feMeshes[i]);
-//
-// for
-// (
-// label ptI = feMesh.convexStart();
-// ptI < feMesh.mixedStart();
-// ptI++
-// )
-// {
-// const Foam::point& apex = feMesh.points()[ptI];
-//
-// if (!positionOnThisProc(apex))
-// {
-// continue;
-// }
-//
-// const vectorField& featPtEdgeDirections
-// = feMesh.featurePointEdgeDirections(ptI);
-//
-// Foam::point masterPoint;
-// vectorField tetNorms;
-//
-// createPyramidMasterPoint
-// (
-// apex,
-// featPtEdgeDirections,
-// masterPoint,
-// tetNorms
-// );
-//
-//
-//
-// // Result when the points are eventually inserted (example n = 4)
-// // Add number_of_vertices() at insertion of first vertex to all
-// // numbers:
-// // pt index type
-// // internalPt 0 1
-// // externalPt0 1 0
-// // externalPt1 2 0
-// // externalPt2 3 0
-// // externalPt3 4 0
-//
-// // Result when the points are eventually inserted (example n = 5)
-// // Add number_of_vertices() at insertion of first vertex to all
-// // numbers:
-// // pt index type
-// // internalPt0 0 5
-// // internalPt1 1 5
-// // internalPt2 2 5
-// // internalPt3 3 5
-// // internalPt4 4 5
-// // externalPt 5 4
-//
-// if (geometryToConformTo_.inside(masterPoint))
-// {
-//
-// }
-// else
-// {
-//
-// }
-//
-// pts.append(masterPoint);
-// indices.append(0);
-// types.append(1);
-//
-// label internalPtIndex = -1;
-//
-// forAll(tetNorms, nI)
-// {
-// const vector& n = tetNorms[nI];
-//
-// Foam::point reflectedPoint
-// = reflectPoint(featPt, masterPoint, n);
-//
-// pts.append(reflectedPoint);
-// indices.append(0);
-// types.append(internalPtIndex--);
-// }
-// }
-// }
-//}
-
-
-Foam::vector Foam::conformalVoronoiMesh::sharedFaceNormal
-(
- const extendedFeatureEdgeMesh& feMesh,
- const label edgeI,
- const label nextEdgeI
-) const
-{
- const labelList& edgeInormals = feMesh.edgeNormals()[edgeI];
- const labelList& nextEdgeInormals = feMesh.edgeNormals()[nextEdgeI];
-
- const vector& A1 = feMesh.normals()[edgeInormals[0]];
- const vector& A2 = feMesh.normals()[edgeInormals[1]];
-
- const vector& B1 = feMesh.normals()[nextEdgeInormals[0]];
- const vector& B2 = feMesh.normals()[nextEdgeInormals[1]];
-
- const scalar A1B1 = mag(A1 ^ B1);
- const scalar A1B2 = mag(A1 ^ B2);
- const scalar A2B1 = mag(A2 ^ B1);
- const scalar A2B2 = mag(A2 ^ B2);
-
- if (A1B1 < A1B2 && A1B1 < A2B1 && A1B1 < A2B2)
- {
- return 0.5*(A1 + B1);
- }
- else if (A1B2 < A1B1 && A1B2 < A2B1 && A1B2 < A2B2)
- {
- return 0.5*(A1 + B2);
- }
- else if (A2B1 < A1B1 && A2B1 < A1B2 && A2B1 < A2B2)
- {
- return 0.5*(A2 + B1);
- }
- else
- {
- return 0.5*(A2 + B2);
- }
-}
-
-
-Foam::List<Foam::point> Foam::conformalVoronoiMesh::reflectPointInPlanes
-(
- const Foam::point p,
- const DynamicList<autoPtr<plane> >& planes
-) const
-{
- List<Foam::point> reflectedPoints(planes.size());
-
- forAll(planes, planeI)
- {
- reflectedPoints[planeI] = reflectPointInPlane(p, planes[planeI]());
- }
-
- return reflectedPoints;
-}
-
-
-Foam::point Foam::conformalVoronoiMesh::reflectPointInPlane
-(
- const Foam::point p,
- const plane& planeN
-) const
-{
- const vector reflectedPtDir = p - planeN.nearestPoint(p);
-
- if ((planeN.normal() & reflectedPtDir) > 0)
- {
- return p - 2.0*planeN.distance(p)*planeN.normal();
- }
- else
- {
- return p + 2.0*planeN.distance(p)*planeN.normal();
- }
-}
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshI.H
deleted file mode 100644
index ca09259e0df443d538db00703e41926a703cee3f..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshI.H
+++ /dev/null
@@ -1,692 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-inline Foam::scalar Foam::conformalVoronoiMesh::defaultCellSize() const
-{
- return cvMeshControls().defaultCellSize();
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::targetCellSize
-(
- const Foam::point& pt
-) const
-{
- return cellShapeControls().cellSize(pt);
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::averageCellSize
-(
- const Vertex_handle& vA,
- const Vertex_handle& vB
-) const
-{
- // Arithmetic mean
- // return 0.5*(vA->targetCellSize() + vB->targetCellSize());
-
- // Geometric mean
- return sqrt(vA->targetCellSize()*vB->targetCellSize());
-
- // Harmonic mean
- // return
- // 2.0*(vA->targetCellSize()*vB->targetCellSize())
- // /(vA->targetCellSize() + vB->targetCellSize());
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::averageAnyCellSize
-(
- const Vertex_handle& vA,
- const Vertex_handle& vB
-) const
-{
- if
- (
- (!vA->internalOrBoundaryPoint() || vA->referred())
- && (!vB->internalOrBoundaryPoint() || vB->referred())
- )
- {
- // There are no internalOrBoundaryPoints available, determine
- // size from scratch
-
- // Geometric mean
- return sqrt
- (
- targetCellSize(topoint(vA->point()))
- *targetCellSize(topoint(vB->point()))
- );
- }
- else if (!vB->internalOrBoundaryPoint() || vB->referred())
- {
- return vA->targetCellSize();
- }
- else if (!vA->internalOrBoundaryPoint() || vA->referred())
- {
- return vB->targetCellSize();
- }
-
- return averageCellSize(vA, vB);
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::averageAnyCellSize
-(
- const Delaunay::Finite_facets_iterator& fit
-) const
-{
- // Arithmetic mean
-
- scalar sizeSum = 0;
-
- label nProducts = 0;
-
- const Cell_handle c(fit->first);
- const int oppositeVertex = fit->second;
-
- for (label i = 0; i < 3; i++)
- {
- Vertex_handle v = c->vertex(vertex_triple_index(oppositeVertex, i));
-
- if (v->internalOrBoundaryPoint() && !v->referred())
- {
-
- sizeSum += v->targetCellSize();
-
- nProducts++;
- }
- }
-
- if (nProducts < 1)
- {
- // There are no internalOrBoundaryPoints available, determine
- // size from scratch
-
- for (label i = 0; i < 3; i++)
- {
- Vertex_handle v = c->vertex(vertex_triple_index(oppositeVertex, i));
-
- sizeSum += targetCellSize(topoint(v->point()));
- }
-
- nProducts = 3;
- }
-
- if (sizeSum < 0)
- {
- WarningIn("averageAnyCellSize(const Delaunay::Finite_facets_iterator&)")
- << "sizeSum = " << sizeSum
- << endl;
-
- return 0;
- }
-
- return pow(sizeSum, (1.0/nProducts));
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::pointPairDistance
-(
- const Foam::point& pt
-) const
-{
- return targetCellSize(pt)*cvMeshControls().pointPairDistanceCoeff();
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::mixedFeaturePointDistance
-(
- const Foam::point& pt
-) const
-{
- return
- pointPairDistance(pt)
- *cvMeshControls().mixedFeaturePointPPDistanceCoeff();
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::featurePointExclusionDistanceSqr
-(
- const Foam::point& pt
-) const
-{
- return
- sqr
- (
- targetCellSize(pt)
- *cvMeshControls().featurePointExclusionDistanceCoeff()
- );
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::featureEdgeExclusionDistanceSqr
-(
- const Foam::point& pt
-) const
-{
- return
- sqr
- (
- targetCellSize(pt)
- *cvMeshControls().featureEdgeExclusionDistanceCoeff()
- );
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::surfacePtExclusionDistanceSqr
-(
- const Foam::point& pt
-) const
-{
- return
- sqr
- (
- targetCellSize(pt)
- *cvMeshControls().surfacePtExclusionDistanceCoeff()
- );
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::surfaceSearchDistanceSqr
-(
- const Foam::point& pt
-) const
-{
- return
- sqr(targetCellSize(pt)*cvMeshControls().surfaceSearchDistanceCoeff());
-}
-
-
-inline Foam::scalar Foam::conformalVoronoiMesh::maxSurfaceProtrusion
-(
- const Foam::point& pt
-) const
-{
- return targetCellSize(pt)*cvMeshControls().maxSurfaceProtrusionCoeff();
-}
-
-
-inline bool Foam::conformalVoronoiMesh::insertPoint
-(
- const Foam::point& p,
- const indexedVertexEnum::vertexType type
-)
-{
- return insertPoint(toPoint<Point>(p), type);
-}
-
-
-inline bool Foam::conformalVoronoiMesh::insertPoint
-(
- const Point& P,
- const indexedVertexEnum::vertexType type
-)
-{
- uint nVert = number_of_vertices();
-
- Vertex_handle vh = insert(P);
-
- bool pointInserted = true;
-
- if (nVert == number_of_vertices())
- {
- Pout<< "Failed to insert point : " << topoint(P)
- << " of type " << type << endl;
- pointInserted = false;
- }
- else
- {
- vh->index() = getNewVertexIndex();
- vh->type() = type;
- }
-
- return pointInserted;
-}
-
-
-inline bool Foam::conformalVoronoiMesh::insertReferredPoint(const Vb& P)
-{
- return insertReferredPoint(P.point(), P.index(), P.type(), P.procIndex());
-}
-
-
-inline bool Foam::conformalVoronoiMesh::insertReferredPoint
-(
- const Foam::point& p,
- const label index,
- const indexedVertexEnum::vertexType type,
- const label processor
-)
-{
- return insertReferredPoint(toPoint<Point>(p), index, type, processor);
-}
-
-
-inline bool Foam::conformalVoronoiMesh::insertReferredPoint
-(
- const Point& P,
- const label index,
- const indexedVertexEnum::vertexType type,
- const label processor
-)
-{
- uint nVert = number_of_vertices();
-
- Vertex_handle vh = insert(P);
-
- bool pointInserted = true;
-
- if (nVert == number_of_vertices())
- {
- Pout<< "Failed to insert point " << topoint(P)
- << " type: " << type << " index: " << index
- << " proc: " << processor << endl;
- pointInserted = false;
- }
- else
- {
- vh->index() = index;
- vh->type() = type;
- vh->procIndex() = processor;
- }
-
- return pointInserted;
-}
-
-
-inline void Foam::conformalVoronoiMesh::createPointPair
-(
- const scalar ppDist,
- const Foam::point& surfPt,
- const vector& n,
- DynamicList<Vb>& pts
-)
-{
- vector ppDistn = ppDist*n;
-
- pts.append
- (
- Vb
- (
- surfPt - ppDistn,
- Vb::vtInternalSurface
- )
- );
-
- pts.append
- (
- Vb
- (
- surfPt + ppDistn,
- Vb::vtExternalSurface
- )
- );
-}
-
-
-inline Foam::point Foam::conformalVoronoiMesh::perturbPoint
-(
- const Foam::point& pt
-) const
-{
- Foam::point perturbedPt(pt);
-
-// vector delta(xR/ni, yR/nj, zR/nk);
-// scalar pert = randomPerturbationCoeff*cmptMin(delta);
-
- scalar pert = 1e-12*defaultCellSize();
-
- perturbedPt.x() += pert*(rndGen_.scalar01() - 0.5);
- perturbedPt.y() += pert*(rndGen_.scalar01() - 0.5);
- perturbedPt.z() += pert*(rndGen_.scalar01() - 0.5);
-
- return perturbedPt;
-}
-
-
-inline void Foam::conformalVoronoiMesh::createBafflePointPair
-(
- const scalar ppDist,
- const Foam::point& surfPt,
- const vector& n,
- DynamicList<Vb>& pts
-)
-{
- vector ppDistn = ppDist*n;
-
- pts.append
- (
- Vb(surfPt - ppDistn, Vb::vtInternalSurface)
- );
-
- pts.append
- (
- Vb(surfPt + ppDistn, Vb::vtInternalSurface)
- );
-}
-
-
-inline bool Foam::conformalVoronoiMesh::isPointPair
-(
- const Vertex_handle& vA,
- const Vertex_handle& vB
-) const
-{
- // Want to do this topologically, but problem if vertices are redistributed
- // so that one of the point pair is one processor and the other is on
- // another.
-
- const Foam::point& ptA = topoint(vA->point());
- const Foam::point& ptB = topoint(vB->point());
-
- if
- (
- (
- vA->type() == Vb::vtInternalSurface
- && vB->type() == Vb::vtExternalSurface
- )
- ||
- (
- vB->type() == Vb::vtInternalSurface
- && vA->type() == Vb::vtExternalSurface
- )
- ||
- (
- vA->type() == Vb::vtInternalFeatureEdge
- && vB->type() == Vb::vtExternalFeatureEdge
- )
- ||
- (
- vB->type() == Vb::vtInternalFeatureEdge
- && vA->type() == Vb::vtExternalFeatureEdge
- )
- ||
- (
- vA->type() == Vb::vtInternalSurface
- && vB->type() == Vb::vtExternalFeatureEdge
- )
- ||
- (
- vB->type() == Vb::vtInternalSurface
- && vA->type() == Vb::vtExternalFeatureEdge
- )
- ||
- (
- vA->type() == Vb::vtExternalSurface
- && vB->type() == Vb::vtInternalFeatureEdge
- )
- ||
- (
- vB->type() == Vb::vtExternalSurface
- && vA->type() == Vb::vtInternalFeatureEdge
- )
- )
- {
- const scalar distSqr = magSqr(ptA - ptB);
-
- const scalar ppDistSqr = sqr(2*pointPairDistance(0.5*(ptA + ptB)));
-
- if (distSqr > 1.001*ppDistSqr)
- {
- return false;
- }
- }
-
- return true;
-}
-
-
-inline bool Foam::conformalVoronoiMesh::isBoundaryDualFace
-(
- const Delaunay::Finite_edges_iterator& eit
-) const
-{
- Cell_handle c = eit->first;
- Vertex_handle vA = c->vertex(eit->second);
- Vertex_handle vB = c->vertex(eit->third);
-
-// if (vA->internalBoundaryPoint() && vB->externalBoundaryPoint())
-// {
-// if (vA->index() == vB->index() - 1)
-// {
-// return true;
-// }
-// }
-// else if (vA->externalBoundaryPoint() && vB->internalBoundaryPoint())
-// {
-// if (vA->index() == vB->index() + 1)
-// {
-// return true;
-// }
-// }
-//
-// return false;
-
- // A dual face on the boundary will result from one Dv inside and
- // one outside
- return
- (
- (
- (vA->internalOrBoundaryPoint() && !vA->referred())
- || (vB->internalOrBoundaryPoint() && !vB->referred())
- )
- && (
- !vA->internalOrBoundaryPoint()
- || !vB->internalOrBoundaryPoint()
- )
- );
-}
-
-
-inline Foam::List<bool> Foam::conformalVoronoiMesh::dualFaceBoundaryPoints
-(
- const Delaunay::Finite_edges_iterator& eit
-) const
-{
- Cell_circulator ccStart = incident_cells(*eit);
- Cell_circulator cc1 = ccStart;
- Cell_circulator cc2 = cc1;
-
- // Advance the second circulator so that it always stays on the next
- // cell around the edge;
- cc2++;
-
- DynamicList<bool> tmpFaceBoundaryPoints;
-
- do
- {
- label cc1I = cc1->cellIndex();
-
- label cc2I = cc2->cellIndex();
-
- if (cc1I != cc2I)
- {
- if (cc1->boundaryDualVertex())
- {
- tmpFaceBoundaryPoints.append(true);
- }
- else
- {
- tmpFaceBoundaryPoints.append(false);
- }
- }
-
- cc1++;
-
- cc2++;
-
- } while (cc1 != ccStart);
-
- return tmpFaceBoundaryPoints;
-}
-
-
-inline Foam::List<Foam::label> Foam::conformalVoronoiMesh::processorsAttached
-(
- const Delaunay::Finite_facets_iterator& fit
-) const
-{
- DynamicList<label> procsAttached(8);
-
- const Cell_handle c1(fit->first);
- const int oppositeVertex = fit->second;
- const Cell_handle c2(c1->neighbor(oppositeVertex));
-
- FixedList<label, 4> c1Procs(c1->processorsAttached());
-
- FixedList<label, 4> c2Procs(c2->processorsAttached());
-
- forAll(c1Procs, aPI)
- {
- if (findIndex(procsAttached, c1Procs[aPI] == -1))
- {
- procsAttached.append(c1Procs[aPI]);
- }
-
- if (findIndex(procsAttached, c2Procs[aPI] == -1))
- {
- procsAttached.append(c2Procs[aPI]);
- }
- }
-
- return List<label>(procsAttached);
-}
-
-
-inline bool Foam::conformalVoronoiMesh::isParallelDualEdge
-(
- const Delaunay::Finite_facets_iterator& fit
-) const
-{
- const Cell_handle c1(fit->first);
- const int oppositeVertex = fit->second;
-
- return
- (
- c1->vertex(vertex_triple_index(oppositeVertex, 0))->referred()
- || c1->vertex(vertex_triple_index(oppositeVertex, 1))->referred()
- || c1->vertex(vertex_triple_index(oppositeVertex, 2))->referred()
- );
-}
-
-
-inline bool Foam::conformalVoronoiMesh::isProcBoundaryEdge
-(
- const Delaunay::Finite_edges_iterator& eit
-) const
-{
- bool isProcBoundaryEdge = false;
-
- Cell_handle c = eit->first;
- Vertex_handle vA = c->vertex(eit->second);
- Vertex_handle vB = c->vertex(eit->third);
-
- if
- (
- (
- (vA->referred() && !vB->referred())
- || (vB->referred() && !vA->referred())
- )
- && vA->internalOrBoundaryPoint()
- && vB->internalOrBoundaryPoint()
- )
- {
- isProcBoundaryEdge = true;
- }
-
- return isProcBoundaryEdge;
-}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-inline Foam::conformalVoronoiMesh::CGALVector
-Foam::conformalVoronoiMesh::toCGALVector(const Foam::vector& v) const
-{
- return CGALVector(v.x(), v.y(), v.z());
-}
-
-
-inline const Foam::Time& Foam::conformalVoronoiMesh::time() const
-{
- return runTime_;
-}
-
-
-inline Foam::Random& Foam::conformalVoronoiMesh::rndGen() const
-{
- return rndGen_;
-}
-
-
-inline const Foam::searchableSurfaces&
-Foam::conformalVoronoiMesh::allGeometry() const
-{
- return allGeometry_;
-}
-
-
-inline const Foam::conformationSurfaces&
-Foam::conformalVoronoiMesh::geometryToConformTo() const
-{
- return geometryToConformTo_;
-}
-
-
-inline const Foam::backgroundMeshDecomposition&
-Foam::conformalVoronoiMesh::decomposition() const
-{
- if (!Pstream::parRun())
- {
- FatalErrorIn
- (
- "inline const Foam::backgroundMeshDecomposition& "
- "Foam::conformalVoronoiMesh::decomposition() const"
- )
- << "The backgroundMeshDecomposition cannot be asked for in serial."
- << exit(FatalError) << endl;
- }
-
- return decomposition_();
-}
-
-
-inline const Foam::cellShapeControl&
-Foam::conformalVoronoiMesh::cellShapeControls() const
-{
- return cellShapeControl_;
-}
-
-
-inline const Foam::cvControls&
-Foam::conformalVoronoiMesh::cvMeshControls() const
-{
- return cvMeshControls_;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshIO.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshIO.C
deleted file mode 100644
index d5e09a88c31bd0d49f064551f5f0f5f1c33ed794..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/conformalVoronoiMeshIO.C
+++ /dev/null
@@ -1,1784 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "conformalVoronoiMesh.H"
-#include "IOstreams.H"
-#include "OFstream.H"
-#include "pointMesh.H"
-#include "pointFields.H"
-#include "ListOps.H"
-#include "polyMeshFilter.H"
-#include "polyTopoChange.H"
-#include "PrintTable.H"
-#include "pointMesh.H"
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-void Foam::conformalVoronoiMesh::timeCheck
-(
- const string& description
-) const
-{
- if (cvMeshControls().timeChecks())
- {
- Info<< nl << "--- [ cpuTime "
- << runTime_.elapsedCpuTime() << " s, "
- << "delta " << runTime_.cpuTimeIncrement()<< " s";
-
- if (description != word::null)
- {
- Info<< ", " << description << " ";
- }
- else
- {
- Info<< " ";
- }
-
- Info<< "] --- " << endl;
-
- memInfo m;
-
- if (m.valid())
- {
- PrintTable<word, label> memoryTable("Memory Usage (kB)");
-
- memoryTable.add("mSize", m.size());
- memoryTable.add("mPeak", m.peak());
- memoryTable.add("mRss", m.rss());
-
- Info<< incrIndent;
- memoryTable.print(Info);
- Info<< decrIndent;
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::printVertexInfo() const
-{
- label nInternal = 0;
- label nInternalRef = 0;
- label nUnassigned = 0;
- label nUnassignedRef = 0;
- label nInternalNearBoundary = 0;
- label nInternalNearBoundaryRef = 0;
- label nInternalSurface = 0;
- label nInternalSurfaceRef = 0;
- label nInternalFeatureEdge = 0;
- label nInternalFeatureEdgeRef = 0;
- label nInternalFeaturePoint = 0;
- label nInternalFeaturePointRef = 0;
- label nExternalSurface = 0;
- label nExternalSurfaceRef = 0;
- label nExternalFeatureEdge = 0;
- label nExternalFeatureEdgeRef = 0;
- label nExternalFeaturePoint = 0;
- label nExternalFeaturePointRef = 0;
- label nFar = 0;
- label nReferred = 0;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->type() == Vb::vtInternal)
- {
- if (vit->referred())
- {
- nReferred++;
- nInternalRef++;
- }
-
- nInternal++;
- }
- else if (vit->type() == Vb::vtUnassigned)
- {
- if (vit->referred())
- {
- nReferred++;
- nUnassignedRef++;
- }
-
- nUnassigned++;
- }
- else if (vit->type() == Vb::vtInternalNearBoundary)
- {
- if (vit->referred())
- {
- nReferred++;
- nInternalNearBoundaryRef++;
- }
-
- nInternalNearBoundary++;
- }
- else if (vit->type() == Vb::vtInternalSurface)
- {
- if (vit->referred())
- {
- nReferred++;
- nInternalSurfaceRef++;
- }
-
- nInternalSurface++;
- }
- else if (vit->type() == Vb::vtInternalFeatureEdge)
- {
- if (vit->referred())
- {
- nReferred++;
- nInternalFeatureEdgeRef++;
- }
-
- nInternalFeatureEdge++;
- }
- else if (vit->type() == Vb::vtInternalFeaturePoint)
- {
- if (vit->referred())
- {
- nReferred++;
- nInternalFeaturePointRef++;
- }
-
- nInternalFeaturePoint++;
- }
- else if (vit->type() == Vb::vtExternalSurface)
- {
- if (vit->referred())
- {
- nReferred++;
- nExternalSurfaceRef++;
- }
-
- nExternalSurface++;
- }
- else if (vit->type() == Vb::vtExternalFeatureEdge)
- {
- if (vit->referred())
- {
- nReferred++;
- nExternalFeatureEdgeRef++;
- }
-
- nExternalFeatureEdge++;
- }
- else if (vit->type() == Vb::vtExternalFeaturePoint)
- {
- if (vit->referred())
- {
- nReferred++;
- nExternalFeaturePointRef++;
- }
-
- nExternalFeaturePoint++;
- }
- else if (vit->type() == Vb::vtFar)
- {
- nFar++;
- }
- }
-
- label nTotalVertices
- = nUnassigned
- + nInternal
- + nInternalNearBoundary
- + nInternalSurface
- + nInternalFeatureEdge
- + nInternalFeaturePoint
- + nExternalSurface
- + nExternalFeatureEdge
- + nExternalFeaturePoint
- + nFar;
-
- if (nTotalVertices != label(number_of_vertices()))
- {
- WarningIn("Foam::conformalVoronoiMesh::printVertexInfo()")
- << nTotalVertices << " does not equal " << number_of_vertices()
- << endl;
- }
-
- PrintTable<word, label> vertexTable("Vertex Type Information");
-
- vertexTable.add("Total", nTotalVertices);
- vertexTable.add("Unassigned", nUnassigned);
- vertexTable.add("nInternal", nInternal);
- vertexTable.add("nInternalNearBoundary", nInternalNearBoundary);
- vertexTable.add("nInternalSurface", nInternalSurface);
- vertexTable.add("nInternalFeatureEdge", nInternalFeatureEdge);
- vertexTable.add("nInternalFeaturePoint", nInternalFeaturePoint);
- vertexTable.add("nExternalSurface", nExternalSurface);
- vertexTable.add("nExternalFeatureEdge", nExternalFeatureEdge);
- vertexTable.add("nExternalFeaturePoint", nExternalFeaturePoint);
- vertexTable.add("nFar", nFar);
- vertexTable.add("nReferred", nReferred);
-
- Info<< endl;
- vertexTable.print(Info);
-}
-
-
-void Foam::conformalVoronoiMesh::drawDelaunayCell
-(
- Ostream& os,
- const Cell_handle& c,
- label offset
-) const
-{
- // Supply offset as tet number
- offset *= 4;
-
- os << "# cell index: " << label(c->cellIndex()) << endl;
-
- os << "# circumradius "
- << mag(c->dual() - topoint(c->vertex(0)->point()))
- << endl;
-
- for (int i = 0; i < 4; i++)
- {
- os << "# index / type / procIndex: "
- << label(c->vertex(i)->index()) << " "
- << label(c->vertex(i)->type()) << " "
- << label(c->vertex(i)->procIndex()) << endl;
-
- meshTools::writeOBJ(os, topoint(c->vertex(i)->point()));
- }
-
- os << "f " << 1 + offset << " " << 3 + offset << " " << 2 + offset << nl
- << "f " << 2 + offset << " " << 3 + offset << " " << 4 + offset << nl
- << "f " << 1 + offset << " " << 4 + offset << " " << 3 + offset << nl
- << "f " << 1 + offset << " " << 2 + offset << " " << 4 + offset << endl;
-
-// os << "# cicumcentre " << endl;
-
-// meshTools::writeOBJ(os, c->dual());
-
-// os << "l " << 1 + offset << " " << 5 + offset << endl;
-}
-
-
-void Foam::conformalVoronoiMesh::writePoints
-(
- const fileName& fName,
- const Foam::indexedVertexEnum::vertexType startPointType,
- const Foam::indexedVertexEnum::vertexType endPointType
-) const
-{
- OFstream str(runTime_.path()/fName);
-
- Pout<< nl << "Writing points of types:" << nl;
-
- forAllConstIter
- (
- HashTable<int>,
- Foam::indexedVertexEnum::vertexTypeNames_,
- iter
- )
- {
- if (iter() >= startPointType && iter() <= endPointType)
- {
- Pout<< " " << iter.key() << nl;
- }
- }
-
- Pout<< "to " << str.name() << endl;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->type() >= startPointType && vit->type() <= endPointType)
- {
- meshTools::writeOBJ(str, topoint(vit->point()));
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::writePoints
-(
- const fileName& fName,
- const Foam::indexedVertexEnum::vertexType pointType
-) const
-{
- writePoints(fName, pointType, pointType);
-}
-
-
-void Foam::conformalVoronoiMesh::writeBoundaryPoints
-(
- const fileName& fName
-) const
-{
- OFstream str(runTime_.path()/fName);
-
- Pout<< nl << "Writing boundary points to " << str.name() << endl;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (!vit->internalPoint())
- {
- meshTools::writeOBJ(str, topoint(vit->point()));
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::writePoints
-(
- const fileName& fName,
- const List<Foam::point>& points
-) const
-{
- if (points.size())
- {
- OFstream str(runTime_.path()/fName);
-
- Pout<< nl << "Writing " << points.size() << " points from pointList to "
- << str.name() << endl;
-
- forAll(points, p)
- {
- meshTools::writeOBJ(str, points[p]);
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::writePoints
-(
- const fileName& fName,
- const List<Vb>& points
-) const
-{
- if (points.size())
- {
- OFstream str(runTime_.path()/fName);
-
- Pout<< nl << "Writing " << points.size() << " points from pointList to "
- << str.name() << endl;
-
- forAll(points, p)
- {
- meshTools::writeOBJ(str, topoint(points[p].point()));
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::writeProcessorInterface
-(
- const fileName& fName,
- const faceList& faces
-) const
-{
- OFstream str(runTime_.path()/fName);
-
- pointField points(number_of_finite_cells(), point::max);
-
- for
- (
- Delaunay::Finite_cells_iterator cit = finite_cells_begin();
- cit != finite_cells_end();
- ++cit
- )
- {
- if (!cit->hasFarPoint() && !is_infinite(cit))
- {
- points[cit->cellIndex()] = cit->dual();
- }
- }
-
- meshTools::writeOBJ(str, faces, points);
-}
-
-
-void Foam::conformalVoronoiMesh::writeInternalDelaunayVertices
-(
- const fileName& instance
-) const
-{
- pointField internalDelaunayVertices(number_of_vertices());
-
- label vertI = 0;
-
- for
- (
- Delaunay::Finite_vertices_iterator vit = finite_vertices_begin();
- vit != finite_vertices_end();
- ++vit
- )
- {
- if (vit->internalPoint())
- {
- internalDelaunayVertices[vertI++] = topoint(vit->point());
- }
- }
-
- internalDelaunayVertices.setSize(vertI);
-
- pointIOField internalDVs
- (
- IOobject
- (
- "internalDelaunayVertices",
- instance,
- runTime_,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- internalDelaunayVertices
- );
-
- Info<< nl
- << "Writing " << internalDVs.name()
- << " to " << internalDVs.instance()
- << endl;
-
- internalDVs.write();
-}
-
-
-void Foam::conformalVoronoiMesh::writeMesh(const fileName& instance)
-{
- writeInternalDelaunayVertices(instance);
-
- // Per cell the Delaunay vertex
- labelList cellToDelaunayVertex;
- // Per patch, per face the Delaunay vertex
- labelListList patchToDelaunayVertex;
- // Per patch the start of the dual faces
- labelList dualPatchStarts;
-
- {
- pointField points;
- labelList boundaryPts(number_of_finite_cells(), -1);
- faceList faces;
- labelList owner;
- labelList neighbour;
- wordList patchTypes;
- wordList patchNames;
- labelList patchSizes;
- labelList procNeighbours;
- pointField cellCentres;
-
- PackedBoolList boundaryFacesToRemove;
-
- calcDualMesh
- (
- points,
- boundaryPts,
- faces,
- owner,
- neighbour,
- patchTypes,
- patchNames,
- patchSizes,
- dualPatchStarts,
- procNeighbours,
- cellCentres,
- cellToDelaunayVertex,
- patchToDelaunayVertex,
- boundaryFacesToRemove
- );
-
- Info<< nl << "Writing polyMesh to " << instance << endl;
-
- writeMesh
- (
- Foam::polyMesh::defaultRegion,
- instance,
- points,
- boundaryPts,
- faces,
- owner,
- neighbour,
- patchTypes,
- patchNames,
- patchSizes,
- dualPatchStarts,
- procNeighbours,
- cellCentres,
- boundaryFacesToRemove
- );
- }
-
- if (cvMeshControls().writeTetDualMesh())
- {
- // Determine map from Delaunay vertex to Dual mesh
- // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- // From all Delaunay vertices to cell (positive index)
- // or patch face (negative index)
- labelList vertexToDualAddressing(number_of_vertices(), 0);
-
- forAll(cellToDelaunayVertex, cellI)
- {
- label vertI = cellToDelaunayVertex[cellI];
-
- if (vertexToDualAddressing[vertI] != 0)
- {
- FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
- << "Delaunay vertex " << vertI
- << " from cell " << cellI
- << " is already mapped to "
- << vertexToDualAddressing[vertI]
- << exit(FatalError);
- }
- vertexToDualAddressing[vertI] = cellI+1;
- }
-
- forAll(patchToDelaunayVertex, patchI)
- {
- const labelList& patchVertices = patchToDelaunayVertex[patchI];
-
- forAll(patchVertices, i)
- {
- label vertI = patchVertices[i];
-
- if (vertexToDualAddressing[vertI] > 0)
- {
- FatalErrorIn("conformalVoronoiMesh::writeMesh(..)")
- << "Delaunay vertex " << vertI
- << " from patch " << patchI
- << " local index " << i
- << " is already mapped to cell "
- << vertexToDualAddressing[vertI]-1
- << exit(FatalError);
- }
-
- // Vertex might be used by multiple faces. Which one to
- // use? For now last one wins.
- label dualFaceI = dualPatchStarts[patchI]+i;
- vertexToDualAddressing[vertI] = -dualFaceI-1;
- }
- }
-
-
- // Calculate tet mesh addressing
- // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- pointField points;
- labelList boundaryPts(number_of_finite_cells(), -1);
- // From tet point back to Delaunay vertex index
- labelList pointToDelaunayVertex;
- faceList faces;
- labelList owner;
- labelList neighbour;
- wordList patchTypes;
- wordList patchNames;
- labelList patchSizes;
- labelList patchStarts;
- pointField cellCentres;
-
- calcTetMesh
- (
- points,
- pointToDelaunayVertex,
- faces,
- owner,
- neighbour,
- patchTypes,
- patchNames,
- patchSizes,
- patchStarts
- );
-
-
-
- // Calculate map from tet points to dual mesh cells/patch faces
- // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- labelIOList pointDualAddressing
- (
- IOobject
- (
- "pointDualAddressing",
- instance,
- "tetDualMesh"/polyMesh::meshSubDir,
- runTime_,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE,
- false
- ),
- UIndirectList<label>
- (
- vertexToDualAddressing,
- pointToDelaunayVertex
- )()
- );
-
- label pointI = findIndex(pointDualAddressing, -1);
- if (pointI != -1)
- {
- WarningIn
- (
- "conformalVoronoiMesh::writeMesh\n"
- "(\n"
- " const fileName& instance,\n"
- " bool filterFaces\n"
- ")\n"
- ) << "Delaunay vertex " << pointI
- << " does not have a corresponding dual cell." << endl;
- }
-
- Info<< "Writing map from tetDualMesh points to Voronoi mesh to "
- << pointDualAddressing.objectPath() << endl;
- pointDualAddressing.write();
-
-
-
- // Write tet points corresponding to the Voronoi cell/face centre
- // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- {
- // Read Voronoi mesh
- fvMesh mesh
- (
- IOobject
- (
- Foam::polyMesh::defaultRegion,
- instance,
- runTime_,
- IOobject::MUST_READ
- )
- );
- pointIOField dualPoints
- (
- IOobject
- (
- "dualPoints",
- instance,
- "tetDualMesh"/polyMesh::meshSubDir,
- runTime_,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE,
- false
- ),
- points
- );
-
- forAll(pointDualAddressing, pointI)
- {
- label index = pointDualAddressing[pointI];
-
- if (index > 0)
- {
- label cellI = index-1;
- dualPoints[pointI] = mesh.cellCentres()[cellI];
- }
- else if (index < 0)
- {
- label faceI = -index-1;
- if (faceI >= mesh.nInternalFaces())
- {
- dualPoints[pointI] = mesh.faceCentres()[faceI];
- }
- }
- }
-
- Info<< "Writing new tetDualMesh points mapped onto Voronoi mesh to "
- << dualPoints.objectPath() << endl
- << "Replace the polyMesh/points with these." << endl;
- dualPoints.write();
- }
-
-
- labelList procNeighbours(patchNames.size(), -1);
-
-// Info<< nl << "Writing tetDualMesh to " << instance << endl;
-
-// writeMesh
-// (
-// "tetDualMesh",
-// instance,
-// points,
-// boundaryPts,
-// faces,
-// owner,
-// neighbour,
-// patchTypes,
-// patchNames,
-// patchSizes,
-// patchStarts,
-// procNeighbours,
-// cellCentres
-// );
- }
-}
-
-
-Foam::autoPtr<Foam::fvMesh> Foam::conformalVoronoiMesh::createDummyMesh
-(
- const IOobject& io,
- const wordList& patchTypes,
- const wordList& patchNames,
- const labelList& patchSizes,
- const labelList& patchStarts,
- const labelList& procNeighbours
-) const
-{
- autoPtr<fvMesh> meshPtr
- (
- new fvMesh
- (
- io,
- xferCopy(pointField()),
- xferCopy(faceList()),
- xferCopy(cellList())
- )
- );
- fvMesh& mesh = meshPtr();
-
- List<polyPatch*> patches(patchStarts.size());
-
- forAll(patches, patchI)
- {
- if (patchTypes[patchI] == processorPolyPatch::typeName)
- {
- patches[patchI] = new processorPolyPatch
- (
- patchNames[patchI],
- 0, //patchSizes[p],
- 0, //patchStarts[p],
- patchI,
- mesh.boundaryMesh(),
- Pstream::myProcNo(),
- procNeighbours[patchI],
- coupledPolyPatch::COINCIDENTFULLMATCH
- );
- }
- else
- {
- patches[patchI] = polyPatch::New
- (
- patchTypes[patchI],
- patchNames[patchI],
- 0, //patchSizes[p],
- 0, //patchStarts[p],
- patchI,
- mesh.boundaryMesh()
- ).ptr();
- }
- }
- mesh.addFvPatches(patches);
-
- return meshPtr;
-}
-
-
-void Foam::conformalVoronoiMesh::checkProcessorPatchesMatch
-(
- const wordList& patchTypes,
- const labelList& patchSizes,
- const labelList& procNeighbours
-) const
-{
- // Check patch sizes
- labelListList procPatchSizes
- (
- Pstream::nProcs(),
- labelList(Pstream::nProcs(), -1)
- );
-
- forAll(patchTypes, patchI)
- {
- if (patchTypes[patchI] == processorPolyPatch::typeName)
- {
- procPatchSizes[Pstream::myProcNo()][procNeighbours[patchI]]
- = patchSizes[patchI];
- }
- }
-
- Pstream::gatherList(procPatchSizes);
-
- if (Pstream::master())
- {
- bool allMatch = true;
-
- forAll(procPatchSizes, procI)
- {
- const labelList& patchSizes = procPatchSizes[procI];
-
- forAll(patchSizes, patchI)
- {
- if (patchSizes[patchI] != procPatchSizes[patchI][procI])
- {
- allMatch = false;
-
- Info<< indent << "Patches " << procI << " and " << patchI
- << " have different sizes: " << patchSizes[patchI]
- << " and " << procPatchSizes[patchI][procI] << endl;
- }
- }
- }
-
- if (allMatch)
- {
- Info<< indent << "All processor patches have matching numbers of "
- << "faces" << endl;
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::reorderPoints
-(
- pointField& points,
- labelList& boundaryPts,
- faceList& faces,
- const label nInternalFaces
-) const
-{
- Info<< incrIndent << indent << "Reordering points into internal/external"
- << endl;
-
- labelList oldToNew(points.size(), 0);
-
- // Find points that are internal
- for (label fI = nInternalFaces; fI < faces.size(); ++fI)
- {
- const face& f = faces[fI];
-
- forAll(f, fpI)
- {
- oldToNew[f[fpI]] = 1;
- }
- }
-
- const label nInternalPoints = points.size() - sum(oldToNew);
-
- label countInternal = 0;
- label countExternal = nInternalPoints;
-
- forAll(points, pI)
- {
- if (oldToNew[pI] == 0)
- {
- oldToNew[pI] = countInternal++;
- }
- else
- {
- oldToNew[pI] = countExternal++;
- }
- }
-
- Info<< indent
- << "Number of internal points: " << countInternal << nl
- << indent << "Number of external points: " << countExternal
- << decrIndent << endl;
-
- inplaceReorder(oldToNew, points);
- inplaceReorder(oldToNew, boundaryPts);
-
- forAll(faces, fI)
- {
- face& f = faces[fI];
-
- forAll(f, fpI)
- {
- f[fpI] = oldToNew[f[fpI]];
- }
- }
-}
-
-
-void Foam::conformalVoronoiMesh::reorderProcessorPatches
-(
- const word& meshName,
- const fileName& instance,
- const pointField& points,
- faceList& faces,
- const wordList& patchTypes,
- const wordList& patchNames,
- const labelList& patchSizes,
- const labelList& patchStarts,
- const labelList& procNeighbours
-) const
-{
- Info<< incrIndent << indent << "Reordering processor patches" << endl;
-
- Info<< incrIndent;
- checkProcessorPatchesMatch(patchTypes, patchSizes, procNeighbours);
-
- // Create dummy mesh with correct proc boundaries to do sorting
- autoPtr<fvMesh> sortMeshPtr
- (
- createDummyMesh
- (
- IOobject
- (
- meshName,
- instance,
- runTime_,
- IOobject::NO_READ,
- IOobject::NO_WRITE,
- false
- ),
- patchTypes,
- patchNames,
- patchSizes,
- patchStarts,
- procNeighbours
- )
- );
- const fvMesh& sortMesh = sortMeshPtr();
-
- // Change the transform type on processors to coincident full match.
-// forAll(sortMesh.boundaryMesh(), patchI)
-// {
-// const polyPatch& patch = sortMesh.boundaryMesh()[patchI];
-//
-// if (isA<processorPolyPatch>(patch))
-// {
-// const processorPolyPatch& cpPatch
-// = refCast<const processorPolyPatch>(patch);
-//
-// processorPolyPatch& pPatch
-// = const_cast<processorPolyPatch&>(cpPatch);
-//
-// pPatch.transform() = coupledPolyPatch::COINCIDENTFULLMATCH;
-// }
-// }
-
- // Rotation on new faces.
- labelList rotation(faces.size(), -1);
- labelList faceMap(faces.size(), -1);
-
- PstreamBuffers pBufs(Pstream::nonBlocking);
-
- // Send ordering
- forAll(sortMesh.boundaryMesh(), patchI)
- {
- const polyPatch& pp = sortMesh.boundaryMesh()[patchI];
-
- if (isA<processorPolyPatch>(pp))
- {
- refCast<const processorPolyPatch>(pp).initOrder
- (
- pBufs,
- primitivePatch
- (
- SubList<face>
- (
- faces,
- patchSizes[patchI],
- patchStarts[patchI]
- ),
- points
- )
- );
- }
- }
-
- pBufs.finishedSends();
-
- // Receive and calculate ordering
- bool anyChanged = false;
-
- forAll(sortMesh.boundaryMesh(), patchI)
- {
- const polyPatch& pp = sortMesh.boundaryMesh()[patchI];
-
- if (isA<processorPolyPatch>(pp))
- {
- labelList patchFaceMap(patchSizes[patchI], -1);
- labelList patchFaceRotation(patchSizes[patchI], 0);
-
- bool changed = refCast<const processorPolyPatch>(pp).order
- (
- pBufs,
- primitivePatch
- (
- SubList<face>
- (
- faces,
- patchSizes[patchI],
- patchStarts[patchI]
- ),
- points
- ),
- patchFaceMap,
- patchFaceRotation
- );
-
- if (changed)
- {
- // Merge patch face reordering into mesh face reordering table
- label start = patchStarts[patchI];
-
- forAll(patchFaceRotation, patchFaceI)
- {
- rotation[patchFaceI + start]
- = patchFaceRotation[patchFaceI];
- }
-
- forAll(patchFaceMap, patchFaceI)
- {
- if (patchFaceMap[patchFaceI] != patchFaceI)
- {
- faceMap[patchFaceI + start]
- = patchFaceMap[patchFaceI] + start;
- }
- }
-
- anyChanged = true;
- }
- }
- }
-
- reduce(anyChanged, orOp<bool>());
-
- if (anyChanged)
- {
- // Rotate faces (rotation is already in new face indices).
- label nRotated = 0;
-
- forAll(rotation, faceI)
- {
- if (rotation[faceI] == -1)
- {
- continue;
- }
-
- if (rotation[faceI] != 0)
- {
- inplaceRotateList<List, label>(faces[faceI], rotation[faceI]);
- nRotated++;
- }
- }
-
- inplaceReorder(faceMap, faces);
-
- Info<< indent << returnReduce(nRotated, sumOp<label>())
- << " faces have been rotated" << decrIndent << decrIndent << endl;
- }
-}
-
-
-void Foam::conformalVoronoiMesh::writeMesh
-(
- const word& meshName,
- const fileName& instance,
- pointField& points,
- labelList& boundaryPts,
- faceList& faces,
- labelList& owner,
- labelList& neighbour,
- const wordList& patchTypes,
- const wordList& patchNames,
- const labelList& patchSizes,
- const labelList& patchStarts,
- const labelList& procNeighbours,
- const pointField& cellCentres,
- const PackedBoolList& boundaryFacesToRemove
-) const
-{
- if (cvMeshControls().objOutput())
- {
- writeObjMesh(points, faces, word(meshName + ".obj"));
- }
-
- reorderPoints(points, boundaryPts, faces, patchStarts[0]);
-
- if (Pstream::parRun())
- {
- reorderProcessorPatches
- (
- meshName,
- instance,
- points,
- faces,
- patchTypes,
- patchNames,
- patchSizes,
- patchStarts,
- procNeighbours
- );
- }
-
- Info<< " Constructing mesh" << endl;
-
- timeCheck("Before fvMesh construction");
-
- fvMesh mesh
- (
- IOobject
- (
- meshName,
- instance,
- runTime_,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- xferMove(points),
- xferMove(faces),
- xferMove(owner),
- xferMove(neighbour)
- );
-
- Info<< " Adding patches to mesh" << endl;
-
- List<polyPatch*> patches(patchStarts.size());
-
- label nValidPatches = 0;
-
- forAll(patches, p)
- {
- if (patchTypes[p] == processorPolyPatch::typeName)
- {
- // Do not create empty processor patches
- if (patchSizes[p] > 0)
- {
- patches[nValidPatches] = new processorPolyPatch
- (
- patchNames[p],
- patchSizes[p],
- patchStarts[p],
- nValidPatches,
- mesh.boundaryMesh(),
- Pstream::myProcNo(),
- procNeighbours[p],
- coupledPolyPatch::NOORDERING
- );
-
- nValidPatches++;
- }
- }
- else
- {
- patches[nValidPatches] = polyPatch::New
- (
- patchTypes[p],
- patchNames[p],
- patchSizes[p],
- patchStarts[p],
- nValidPatches,
- mesh.boundaryMesh()
- ).ptr();
-
- nValidPatches++;
- }
- }
-
- // Add indirectPatchFaces to a face zone
- {
- labelList addr(boundaryFacesToRemove.count());
- label count = 0;
-
- forAll(boundaryFacesToRemove, faceI)
- {
- if (boundaryFacesToRemove[faceI])
- {
- addr[count++] = faceI;
- }
- }
-
- label sz = mesh.faceZones().size();
- boolList flip(addr.size(), false);
- mesh.faceZones().setSize(sz + 1);
- mesh.faceZones().set
- (
- sz,
- new faceZone
- (
- "indirectPatchFaces",
- addr,
- flip,
- sz,
- mesh.faceZones()
- )
- );
- }
-
- patches.setSize(nValidPatches);
-
- mesh.addFvPatches(patches);
-
- timeCheck("Before fvMesh filtering");
-
- autoPtr<polyMeshFilter> meshFilter;
-
- label nInitialBadFaces = 0;
-
- if (cvMeshControls().filterEdges())
- {
- Info<< nl << "Filtering edges on polyMesh" << nl << endl;
-
- meshFilter.reset(new polyMeshFilter(mesh));
-
- // Filter small edges only. This reduces the number of faces so that
- // the face filtering is sped up.
- nInitialBadFaces = meshFilter().filterEdges(0);
- {
- const autoPtr<fvMesh>& newMesh = meshFilter().filteredMesh();
-
- polyTopoChange meshMod(newMesh);
-
- meshMod.changeMesh(mesh, false);
- }
- }
-
- if (cvMeshControls().filterFaces())
- {
- Info<< nl << "Filtering faces on polyMesh" << nl << endl;
-
- meshFilter.reset(new polyMeshFilter(mesh));
-
- meshFilter().filter(nInitialBadFaces);
- {
- const autoPtr<fvMesh>& newMesh = meshFilter().filteredMesh();
-
- polyTopoChange meshMod(newMesh);
-
- meshMod.changeMesh(mesh, false);
- }
- }
-
- timeCheck("After fvMesh filtering");
-
- mesh.setInstance(instance);
-
- if (!mesh.write())
- {
- FatalErrorIn("Foam::conformalVoronoiMesh::writeMesh(..)")
- << "Failed writing polyMesh."
- << exit(FatalError);
- }
- else
- {
- Info<< nl << "Written filtered mesh to "
- << mesh.polyMesh::instance() << nl
- << endl;
- }
-
-
- volTensorField alignments
- (
- IOobject
- (
- "alignmentsField",
- runTime_.timeName(),
- runTime_,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- mesh,
- tensor::zero
- );
-
- forAll(mesh.cellCentres(), pI)
- {
- Vertex_handle nearV =
- nearest_vertex
- (
- toPoint<Point>(mesh.cellCentres()[pI])
- );
- alignments[pI] = nearV->alignment();
- }
- alignments.write();
-
- {
- volVectorField alignmentx
- (
- IOobject
- (
- "alignmentsx",
- runTime_.timeName(),
- runTime_,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- mesh,
- vector::zero
- );
- forAll(alignmentx, aI)
- {
- alignmentx[aI] = alignments[aI].x();
- }
- alignmentx.write();
- }
- {
- volVectorField alignmenty
- (
- IOobject
- (
- "alignmentsy",
- runTime_.timeName(),
- runTime_,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- mesh,
- vector::zero
- );
- forAll(alignmenty, aI)
- {
- alignmenty[aI] = alignments[aI].y();
- }
- alignmenty.write();
- }
- {
- volVectorField alignmentz
- (
- IOobject
- (
- "alignmentsz",
- runTime_.timeName(),
- runTime_,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- mesh,
- vector::zero
- );
- forAll(alignmentz, aI)
- {
- alignmentz[aI] = alignments[aI].z();
- }
- alignmentz.write();
- }
- labelIOList boundaryIOPts
- (
- IOobject
- (
- "boundaryPoints",
- instance,
- runTime_,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- boundaryPts
- );
-
-
-
-
- // Dump list of boundary points
- forAll(mesh.boundaryMesh(), patchI)
- {
- const polyPatch& pp = mesh.boundaryMesh()[patchI];
-
- if (!isA<coupledPolyPatch>(pp))
- {
- forAll(pp, fI)
- {
- const face& boundaryFace = pp[fI];
-
- forAll(boundaryFace, pI)
- {
- const label boundaryPointI = boundaryFace[pI];
-
- boundaryIOPts[boundaryPointI] = boundaryPts[boundaryPointI];
- }
- }
- }
- }
-
- boundaryIOPts.write();
-
-// forAllConstIter(labelHashSet, pointsInPatch, pI)
-// {
-// const Foam::point& ptMaster = mesh.points()[pI.key()];
-//
-// forAllConstIter(labelHashSet, pointsInPatch, ptI)
-// {
-// if (ptI.key() != pI.key())
-// {
-// const Foam::point& ptSlave = mesh.points()[ptI.key()];
-//
-// const scalar dist = mag(ptMaster - ptSlave);
-// if (ptMaster == ptSlave)
-// {
-// Pout<< "Point(" << pI.key() << ") " << ptMaster
-// << " == "
-// << "(" << ptI.key() << ") " << ptSlave
-// << endl;
-// }
-// else if (dist == 0)
-// {
-// Pout<< "Point(" << pI.key() << ") " << ptMaster
-// << " ~= "
-// << "(" << ptI.key() << ") " << ptSlave
-// << endl;
-// }
-// }
-// }
-// }
-
-// writeCellSizes(mesh);
-
-// writeCellAlignments(mesh);
-
-// writeCellCentres(mesh);
-
-// findRemainingProtrusionSet(mesh);
-}
-
-
-void Foam::conformalVoronoiMesh::writeObjMesh
-(
- const pointField& points,
- const faceList& faces,
- const fileName& fName
-) const
-{
- OFstream str(runTime_.path()/fName);
-
- Pout<< nl << "Writing points and faces to " << str.name() << endl;
-
- forAll(points, p)
- {
- meshTools::writeOBJ(str, points[p]);
- }
-
- forAll(faces, f)
- {
- str<< 'f';
-
- const face& fP = faces[f];
-
- forAll(fP, p)
- {
- str<< ' ' << fP[p] + 1;
- }
-
- str<< nl;
- }
-}
-
-
-void Foam::conformalVoronoiMesh::writeCellSizes
-(
- const fvMesh& mesh
-) const
-{
- {
- timeCheck("Start writeCellSizes");
-
- Info<< nl << "Create targetCellSize volScalarField" << endl;
-
- volScalarField targetCellSize
- (
- IOobject
- (
- "targetCellSize",
- mesh.polyMesh::instance(),
- mesh,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- mesh,
- dimensionedScalar("cellSize", dimLength, 0),
- zeroGradientFvPatchScalarField::typeName
- );
-
- scalarField& cellSize = targetCellSize.internalField();
-
- const vectorField& C = mesh.cellCentres();
-
- forAll(cellSize, i)
- {
- cellSize[i] = cellShapeControls().cellSize(C[i]);
- }
-
- // Info<< nl << "Create targetCellVolume volScalarField" << endl;
-
- // volScalarField targetCellVolume
- // (
- // IOobject
- // (
- // "targetCellVolume",
- // mesh.polyMesh::instance(),
- // mesh,
- // IOobject::NO_READ,
- // IOobject::AUTO_WRITE
- // ),
- // mesh,
- // dimensionedScalar("cellVolume", dimLength, 0),
- // zeroGradientFvPatchScalarField::typeName
- // );
-
- // targetCellVolume.internalField() = pow3(cellSize);
-
- // Info<< nl << "Create actualCellVolume volScalarField" << endl;
-
- // volScalarField actualCellVolume
- // (
- // IOobject
- // (
- // "actualCellVolume",
- // mesh.polyMesh::instance(),
- // mesh,
- // IOobject::NO_READ,
- // IOobject::AUTO_WRITE
- // ),
- // mesh,
- // dimensionedScalar("cellVolume", dimVolume, 0),
- // zeroGradientFvPatchScalarField::typeName
- // );
-
- // actualCellVolume.internalField() = mesh.cellVolumes();
-
- // Info<< nl << "Create equivalentCellSize volScalarField" << endl;
-
- // volScalarField equivalentCellSize
- // (
- // IOobject
- // (
- // "equivalentCellSize",
- // mesh.polyMesh::instance(),
- // mesh,
- // IOobject::NO_READ,
- // IOobject::AUTO_WRITE
- // ),
- // mesh,
- // dimensionedScalar("cellSize", dimLength, 0),
- // zeroGradientFvPatchScalarField::typeName
- // );
-
- // equivalentCellSize.internalField() = pow
- // (
- // actualCellVolume.internalField(),
- // 1.0/3.0
- // );
-
- targetCellSize.correctBoundaryConditions();
- // targetCellVolume.correctBoundaryConditions();
- // actualCellVolume.correctBoundaryConditions();
- // equivalentCellSize.correctBoundaryConditions();
-
- targetCellSize.write();
- // targetCellVolume.write();
- // actualCellVolume.write();
- // equivalentCellSize.write();
- }
-
- // {
- // polyMesh tetMesh
- // (
- // IOobject
- // (
- // "tetDualMesh",
- // runTime_.constant(),
- // runTime_,
- // IOobject::MUST_READ
- // )
- // );
-
- // pointMesh ptMesh(tetMesh);
-
- // pointScalarField ptTargetCellSize
- // (
- // IOobject
- // (
- // "ptTargetCellSize",
- // runTime_.timeName(),
- // tetMesh,
- // IOobject::NO_READ,
- // IOobject::AUTO_WRITE
- // ),
- // ptMesh,
- // dimensionedScalar("ptTargetCellSize", dimLength, 0),
- // pointPatchVectorField::calculatedType()
- // );
-
- // scalarField& cellSize = ptTargetCellSize.internalField();
-
- // const vectorField& P = tetMesh.points();
-
- // forAll(cellSize, i)
- // {
- // cellSize[i] = cellShapeControls().cellSize(P[i]);
- // }
-
- // ptTargetCellSize.write();
- // }
-}
-
-
-void Foam::conformalVoronoiMesh::writeCellAlignments
-(
- const fvMesh& mesh
-) const
-{
-// Info<< nl << "Create cellAlignments volTensorField" << endl;
-//
-// volTensorField cellAlignments
-// (
-// IOobject
-// (
-// "cellAlignments",
-// mesh.polyMesh::instance(),
-// mesh,
-// IOobject::NO_READ,
-// IOobject::AUTO_WRITE
-// ),
-// mesh,
-// tensor::I,
-// zeroGradientFvPatchTensorField::typeName
-// );
-//
-// tensorField& cellAlignment = cellAlignments.internalField();
-//
-// const vectorField& C = mesh.cellCentres();
-//
-// vectorField xDir(cellAlignment.size());
-// vectorField yDir(cellAlignment.size());
-// vectorField zDir(cellAlignment.size());
-//
-// forAll(cellAlignment, i)
-// {
-// cellAlignment[i] = cellShapeControls().cellAlignment(C[i]);
-// xDir[i] = cellAlignment[i] & vector(1, 0, 0);
-// yDir[i] = cellAlignment[i] & vector(0, 1, 0);
-// zDir[i] = cellAlignment[i] & vector(0, 0, 1);
-// }
-//
-// OFstream xStr("xDir.obj");
-// OFstream yStr("yDir.obj");
-// OFstream zStr("zDir.obj");
-//
-// forAll(xDir, i)
-// {
-// meshTools::writeOBJ(xStr, C[i], C[i] + xDir[i]);
-// meshTools::writeOBJ(yStr, C[i], C[i] + yDir[i]);
-// meshTools::writeOBJ(zStr, C[i], C[i] + zDir[i]);
-// }
-//
-// cellAlignments.correctBoundaryConditions();
-//
-// cellAlignments.write();
-}
-
-
-void Foam::conformalVoronoiMesh::writeCellCentres
-(
- const fvMesh& mesh
-) const
-{
- Info<< "Writing components of cellCentre positions to volScalarFields"
- << " ccx, ccy, ccz in " << runTime_.timeName() << endl;
-
- for (direction i=0; i<vector::nComponents; i++)
- {
- volScalarField cci
- (
- IOobject
- (
- "cc" + word(vector::componentNames[i]),
- runTime_.timeName(),
- mesh,
- IOobject::NO_READ,
- IOobject::AUTO_WRITE
- ),
- mesh.C().component(i)
- );
-
- cci.write();
- }
-}
-
-
-Foam::labelHashSet Foam::conformalVoronoiMesh::findRemainingProtrusionSet
-(
- const polyMesh& mesh
-) const
-{
- timeCheck("Start findRemainingProtrusionSet");
-
- const polyBoundaryMesh& patches = mesh.boundaryMesh();
-
- labelHashSet protrudingBoundaryPoints;
-
- forAll(patches, patchI)
- {
- const polyPatch& patch = patches[patchI];
-
- forAll(patch.localPoints(), pLPI)
- {
- label meshPtI = patch.meshPoints()[pLPI];
-
- const Foam::point& pt = patch.localPoints()[pLPI];
-
- if
- (
- geometryToConformTo_.wellOutside
- (
- pt,
- sqr(targetCellSize(pt))
- )
- )
- {
- protrudingBoundaryPoints.insert(meshPtI);
- }
- }
- }
-
- cellSet protrudingCells
- (
- mesh,
- "cvMesh_remainingProtrusions",
- mesh.nCells()/1000
- );
-
- forAllConstIter(labelHashSet, protrudingBoundaryPoints, iter)
- {
- const label pointI = iter.key();
- const labelList& pCells = mesh.pointCells()[pointI];
-
- forAll(pCells, pCI)
- {
- protrudingCells.insert(pCells[pCI]);
- }
- }
-
- label protrudingCellsSize = protrudingCells.size();
-
- reduce(protrudingCellsSize, sumOp<label>());
-
- if (cvMeshControls().objOutput() && protrudingCellsSize > 0)
- {
- Info<< nl << "Found " << protrudingCellsSize
- << " cells protruding from the surface, writing cellSet "
- << protrudingCells.name()
- << endl;
-
- protrudingCells.write();
- }
-
- return protrudingCells;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCell.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCell.C
deleted file mode 100644
index bd4973b32b91f5e81e317fbf6b5d88376a246315..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCell.C
+++ /dev/null
@@ -1,89 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "indexedCell.H"
-
-// * * * * * * * * * * * * * * * * IOStream operators * * * * * * * * * * * //
-
-template<class Gt, class Cb>
-Foam::Ostream& Foam::operator<<
-(
- Ostream& os,
- const InfoProxy<CGAL::indexedCell<Gt, Cb> >& p
-)
-{
- const CGAL::indexedCell<Gt, Cb>& iv = p.t_;
-
- os << "Cell: ";
-
- if (iv.index_ == CGAL::indexedCell<Gt, Cb>::ctFar)
- {
- os << "far";
- }
- else if (iv.index_ >= 0)
- {
- os << iv.index_;
- }
- else if (iv.index_ == CGAL::indexedCell<Gt, Cb>::ctInternal)
- {
- os << "internal";
- }
- else if (iv.index_ == CGAL::indexedCell<Gt, Cb>::ctSurface)
- {
- os << "surface";
- }
- else if (iv.index_ == CGAL::indexedCell<Gt, Cb>::ctFeatureEdge)
- {
- os << "featureEdge";
- }
- else if (iv.index_ == CGAL::indexedCell<Gt, Cb>::ctFeaturePoint)
- {
- os << "featurePoint";
- }
- else
- {
- os << "unassigned";
- }
-
- if (iv.parallelDualVertex())
- {
- os << " (processor)";
- }
- else
- {
- os << " (local)";
- }
-
- os << " filterCount: " << iv.filterCount_ << nl;
- os << " " << iv.vertex(0)->info();
- os << " " << iv.vertex(1)->info();
- os << " " << iv.vertex(2)->info();
- os << " " << iv.vertex(3)->info();
-
- return os;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCell.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCell.H
deleted file mode 100644
index 4669110b6e9edbb95dd1e0a9ea240576f95a49fd..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCell.H
+++ /dev/null
@@ -1,262 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- indexedCell
-
-Description
- An indexed form of CGAL::Triangulation_cell_base_3<K> used to keep
- track of the Delaunay cells (tets) in the tessellation.
-
-SourceFiles
- indexedCellI.H
- indexedCell.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef indexedCell_H
-#define indexedCell_H
-
-#include <CGAL/Triangulation_3.h>
-#include <CGAL/Triangulation_cell_base_with_circumcenter_3.h>
-#include "indexedVertex.H"
-#include "List.H"
-#include "globalIndex.H"
-#include "Pstream.H"
-#include "Swap.H"
-#include "InfoProxy.H"
-#include "tetCell.H"
-#include "typeInfo.H"
-#include "vectorTools.H"
-#include "indexedCellEnum.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace CGAL
-{
-template<class Gt, class Cb> class indexedCell;
-}
-
-namespace Foam
-{
-class Ostream;
-template<class Gt, class Cb> Ostream& operator<<
-(
- Ostream&,
- const Foam::InfoProxy<CGAL::indexedCell<Gt, Cb> >&
-);
-}
-
-
-namespace CGAL
-{
-
-/*---------------------------------------------------------------------------*\
- Class indexedCell Declaration
-\*---------------------------------------------------------------------------*/
-
-template
-<
- class Gt,
- class Cb=CGAL::Triangulation_cell_base_with_circumcenter_3<Gt>
->
-class indexedCell
-:
- public Foam::indexedCellEnum,
- public Cb
-{
- // Private data
-
- //- The index for this Delaunay tetrahedral cell. Type information is
- //- also carried:
-
- // ctFar : the dual point of this cell does not form part of the
- // internal or boundary of the dual mesh
- // >=0 : the (local) index of an internal or boundary dual point,
- // not on a processor face
- // < 0 && > ctFar : the (global) index of a dual point on a processor
- // face
-
- int index_;
-
- //- The number of times that this Delaunay cell has been limited
- // during filtering
- int filterCount_;
-
-
- // Private member functions
-
- //- Same as globallyOrderedCellVertices but without sorting
- Foam::tetCell unsortedVertexGlobalIndices
- (
- const Foam::globalIndex& globalDelaunayVertexIndices
- ) const;
-
-
-public:
-
- typedef typename Cb::Vertex_handle Vertex_handle;
- typedef typename Cb::Cell_handle Cell_handle;
-
- template < typename TDS2 >
- struct Rebind_TDS
- {
- typedef typename Cb::template Rebind_TDS<TDS2>::Other Cb2;
- typedef indexedCell<Gt, Cb2> Other;
- };
-
-
- // Constructors
-
- inline indexedCell();
-
- inline indexedCell
- (
- Vertex_handle v0,
- Vertex_handle v1,
- Vertex_handle v2,
- Vertex_handle v3
- );
-
- inline indexedCell
- (
- Vertex_handle v0,
- Vertex_handle v1,
- Vertex_handle v2,
- Vertex_handle v3,
- Cell_handle n0,
- Cell_handle n1,
- Cell_handle n2,
- Cell_handle n3
- );
-
-
- // Member Functions
-
- inline int& cellIndex();
-
- inline int cellIndex() const;
-
-#ifdef CGAL_INEXACT
- inline const Foam::point& dual();
-#else
- inline const Foam::point dual();
-#endif
-
- inline bool unassigned() const;
-
- inline int& filterCount();
-
- inline int filterCount() const;
-
- //- Is the Delaunay cell real, i.e. any real vertex
- inline bool real() const;
-
- //- Does the Delaunay cell have a far point
- inline bool hasFarPoint() const;
-
- //- Does the Delaunay cell have a feature point
- inline bool hasFeaturePoint() const;
-
- //- Does the Delaunay cell have a seed point
- inline bool hasSeedPoint() const;
-
- inline bool hasInternalPoint() const;
-
- //- Does the Dual vertex form part of a processor patch
- inline bool parallelDualVertex() const;
-
- //- Does the Dual vertex form part of a processor patch
- inline Foam::label dualVertexMasterProc() const;
-
- inline Foam::FixedList<Foam::label, 4> processorsAttached() const;
-
- //- Using the globalIndex object, return a list of four (sorted) global
- // Delaunay vertex indices that uniquely identify this tet in parallel
- inline Foam::tetCell vertexGlobalIndices
- (
- const Foam::globalIndex& globalDelaunayVertexIndices
- ) const;
-
- //- Using the globalIndex object, return a list of four vertices with
- // so that the cell has a consistent orientation in parallel.
- inline Foam::FixedList<Foam::label, 4> globallyOrderedCellVertices
- (
- const Foam::globalIndex& globalDelaunayVertexIndices
- ) const;
-
- //- Is the Delaunay cell part of the final dual mesh, i.e. any vertex
- // form part of the internal or boundary definition
- inline bool internalOrBoundaryDualVertex() const;
-
- //- Is the Delaunay cell real or referred (or mixed), i.e. all vertices
- // form part of the real or referred internal or boundary definition
- inline bool anyInternalOrBoundaryDualVertex() const;
-
- //- A dual vertex on the boundary will result from a Delaunay cell with
- // least one Delaunay vertex outside and at least one inside
- inline bool boundaryDualVertex() const;
-
- //- A dual vertex on a feature edge will result from this Delaunay cell
- inline bool featureEdgeDualVertex() const;
-
- inline bool nearProcBoundary() const;
-
- inline bool potentialCoplanarCell() const;
-
-
- // Info
-
- //- Return info proxy.
- // Used to print indexedCell information to a stream
- Foam::InfoProxy<indexedCell<Gt, Cb> > info() const
- {
- return *this;
- }
-
- friend Foam::Ostream& Foam::operator<< <Gt, Cb>
- (
- Foam::Ostream&,
- const Foam::InfoProxy<indexedCell<Gt, Cb> >&
- );
-
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace CGAL
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "indexedCellI.H"
-
-#ifdef NoRepository
-# include "indexedCell.C"
-#endif
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellChecks.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellChecks.C
deleted file mode 100644
index 7213739844d2035931f2177751a37ac76311ea1a..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellChecks.C
+++ /dev/null
@@ -1,128 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "plane.H"
-#include "tetrahedron.H"
-#include "pointConversion.H"
-#include "CGALTriangulation3DKernel.H"
-
-
-template <typename Cell>
-Foam::scalar Foam::cvMeshChecks::coplanarTet
-(
- Cell& c,
- const scalar tol
-)
-{
- tetPointRef tet
- (
- topoint(c->vertex(0)->point()),
- topoint(c->vertex(1)->point()),
- topoint(c->vertex(2)->point()),
- topoint(c->vertex(3)->point())
- );
-
- const scalar quality = tet.quality();
-
- if (quality < tol)
- {
- return quality;
- }
-
- return 0;
-
-// plane triPlane
-// (
-// topoint(c->vertex(0)->point()),
-// topoint(c->vertex(1)->point()),
-// topoint(c->vertex(2)->point())
-// );
-//
-// const scalar distance = triPlane.distance(topoint(c->vertex(3)->point()));
-//
-// // Check if the four points are roughly coplanar. If they are then we
-// // cannot calculate the circumcentre. Better test might be the volume
-// // of the tet.
-// if (distance < tol)
-// {
-// return 0;
-// }
-//
-// return distance;
-}
-
-
-template <typename Cell>
-bool Foam::cvMeshChecks::closePoints
-(
- Cell& c,
- const scalar tol
-)
-{
- for (label v = 0; v < 4; ++v)
- {
- for (label vA = v + 1; vA < 4; ++vA)
- {
- if
- (
- mag
- (
- topoint(c->vertex(v)->point())
- - topoint(c->vertex(vA)->point())
- )
- < tol
- )
- {
- return true;
- }
- }
- }
-
- return false;
-}
-
-
-template <typename Cell>
-bool Foam::cvMeshChecks::smallVolume
-(
- Cell& c,
- const scalar tol
-)
-{
- CGAL::Tetrahedron_3<baseK> tet
- (
- c->vertex(0)->point(),
- c->vertex(1)->point(),
- c->vertex(2)->point(),
- c->vertex(3)->point()
- );
-
- if (tet.volume() < tol)
- {
- return true;
- }
-
- return false;
-}
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellChecks.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellChecks.H
deleted file mode 100644
index c040eafab67c1b07447377de165db13fb32b7dce..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellChecks.H
+++ /dev/null
@@ -1,77 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef indexedCellChecks_H
-#define indexedCellChecks_H
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-namespace cvMeshChecks
-{
-
- template <typename Cell>
- scalar coplanarTet
- (
- Cell& c,
- const scalar tol = 1e-12
- );
-
- template <typename Cell>
- bool closePoints
- (
- Cell& c,
- const scalar tol = 1e-12
- );
-
- template <typename Cell>
- bool smallVolume
- (
- Cell& c,
- const scalar tol = 0.0
- );
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace cvMeshChecks
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#ifdef NoRepository
-# include "indexedCellChecks.C"
-#endif
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellEnum.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellEnum.C
deleted file mode 100644
index 5d7d953948bb73934c550843bb1371d068a3b249..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellEnum.C
+++ /dev/null
@@ -1,46 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "indexedCellEnum.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-template<>
-const char*
-Foam::NamedEnum<Foam::indexedCellEnum::cellTypes, 6>::names[] =
-{
- "Unassigned",
- "Internal",
- "Surface",
- "FeatureEdge",
- "FeaturePoint",
- "Far"
-};
-
-const Foam::NamedEnum<Foam::indexedCellEnum::cellTypes, 6>
-cellTypesNames_;
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellEnum.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellEnum.H
deleted file mode 100644
index 5ccef621e74d1bf80816da1fd6380a77779fac15..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellEnum.H
+++ /dev/null
@@ -1,80 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- indexedCellEnum
-
-Description
-
-SourceFiles
- indexedCellEnum.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef indexedCellEnum_H
-#define indexedCellEnum_H
-
-#include "NamedEnum.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-class indexedCellEnum
-{
-public:
-
-
- enum cellTypes
- {
- ctUnassigned = INT_MIN,
- ctFar = INT_MIN + 1,
- ctInternal = INT_MIN + 2,
- ctSurface = INT_MIN + 3,
- ctFeatureEdge = INT_MIN + 4,
- ctFeaturePoint = INT_MIN + 5
- };
-
- static const Foam::NamedEnum<cellTypes, 6> cellTypesNames_;
-};
-
-
-template<>
-inline bool contiguous<indexedCellEnum>()
-{
- return true;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellI.H
deleted file mode 100644
index 83434ba2f12712085d2ca796067708d195eddc8a..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedCell/indexedCellI.H
+++ /dev/null
@@ -1,538 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-//#include "indexedCellChecks.H"
-
-template<class Gt, class Cb>
-Foam::tetCell CGAL::indexedCell<Gt, Cb>::unsortedVertexGlobalIndices
-(
- const Foam::globalIndex& globalDelaunayVertexIndices
-) const
-{
- Foam::tetCell tVGI;
-
- for (int i = 0; i < 4; i++)
- {
- Vertex_handle v = this->vertex(i);
-
- // Finding the global index of each Delaunay vertex
- tVGI[i] = globalDelaunayVertexIndices.toGlobal
- (
- Foam::Pstream::myProcNo(),
- v->index()
- );
- }
-
- return tVGI;
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-template<class Gt, class Cb>
-CGAL::indexedCell<Gt, Cb>::indexedCell()
-:
- Cb(),
- index_(ctUnassigned),
- filterCount_(0)
-{}
-
-
-template<class Gt, class Cb>
-CGAL::indexedCell<Gt, Cb>::indexedCell
-(
- Vertex_handle v0, Vertex_handle v1, Vertex_handle v2, Vertex_handle v3
-)
-:
- Cb(v0, v1, v2, v3),
- index_(ctUnassigned),
- filterCount_(0)
-{}
-
-
-template<class Gt, class Cb>
-CGAL::indexedCell<Gt, Cb>::indexedCell
-(
- Vertex_handle v0,
- Vertex_handle v1,
- Vertex_handle v2,
- Vertex_handle v3,
- Cell_handle n0,
- Cell_handle n1,
- Cell_handle n2,
- Cell_handle n3
-)
-:
- Cb(v0, v1, v2, v3, n0, n1, n2, n3),
- index_(ctUnassigned),
- filterCount_(0)
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-template<class Gt, class Cb>
-int& CGAL::indexedCell<Gt, Cb>::cellIndex()
-{
- return index_;
-}
-
-
-template<class Gt, class Cb>
-int CGAL::indexedCell<Gt, Cb>::cellIndex() const
-{
- return index_;
-}
-
-
-#ifdef CGAL_INEXACT
- template<class Gt, class Cb>
- const Foam::point& CGAL::indexedCell<Gt, Cb>::dual()
- {
- // if (Foam::cvMeshChecks::coplanarTet(*this, 1e-20) == 0)
- // {
- // Do exact calc
- // }
-
- return reinterpret_cast<const Foam::point&>(this->circumcenter());
- }
-#else
- template<class Gt, class Cb>
- const Foam::point CGAL::indexedCell<Gt, Cb>::dual()
- {
- const typename Gt::Point_3& P = this->circumcenter();
-
- return Foam::point
- (
- CGAL::to_double(P.x()),
- CGAL::to_double(P.y()),
- CGAL::to_double(P.z())
- );
- }
-#endif
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::unassigned() const
-{
- return index_ == ctUnassigned;
-}
-
-
-template<class Gt, class Cb>
-inline int& CGAL::indexedCell<Gt, Cb>::filterCount()
-{
- return filterCount_;
-}
-
-
-template<class Gt, class Cb>
-inline int CGAL::indexedCell<Gt, Cb>::filterCount() const
-{
- return filterCount_;
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::real() const
-{
- return
- (
- (
- this->vertex(0)->real()
- || this->vertex(1)->real()
- || this->vertex(2)->real()
- || this->vertex(3)->real()
- )
- &&
- !(
- this->vertex(0)->farPoint()
- || this->vertex(1)->farPoint()
- || this->vertex(2)->farPoint()
- || this->vertex(3)->farPoint()
- )
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::hasFarPoint() const
-{
- return
- (
- this->vertex(0)->farPoint()
- || this->vertex(1)->farPoint()
- || this->vertex(2)->farPoint()
- || this->vertex(3)->farPoint()
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::hasFeaturePoint() const
-{
- return
- (
- this->vertex(0)->featurePoint()
- || this->vertex(1)->featurePoint()
- || this->vertex(2)->featurePoint()
- || this->vertex(3)->featurePoint()
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::hasSeedPoint() const
-{
- return
- (
- this->vertex(0)->seedPoint()
- || this->vertex(1)->seedPoint()
- || this->vertex(2)->seedPoint()
- || this->vertex(3)->seedPoint()
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::hasInternalPoint() const
-{
- return
- (
- this->vertex(0)->internalPoint()
- || this->vertex(1)->internalPoint()
- || this->vertex(2)->internalPoint()
- || this->vertex(3)->internalPoint()
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::parallelDualVertex() const
-{
- return
- (
- !this->hasFarPoint()
- &&
- (
- this->vertex(0)->referred()
- || this->vertex(1)->referred()
- || this->vertex(2)->referred()
- || this->vertex(3)->referred()
- )
- &&
- (
- this->vertex(0)->real()
- || this->vertex(1)->real()
- || this->vertex(2)->real()
- || this->vertex(3)->real()
- )
- );
-}
-
-
-template<class Gt, class Cb>
-inline Foam::label CGAL::indexedCell<Gt, Cb>::dualVertexMasterProc() const
-{
- if (!parallelDualVertex())
- {
- return -1;
- }
-
- // The master processor is the lowest numbered of the four on this tet.
-
- int masterProc = Foam::Pstream::nProcs() + 1;
-
- for (int i = 0; i < 4; i++)
- {
- if (this->vertex(i)->referred())
- {
- masterProc = min(masterProc, this->vertex(i)->procIndex());
- }
- else
- {
- masterProc = min(masterProc, Foam::Pstream::myProcNo());
- }
- }
-
- return masterProc;
-}
-
-
-template<class Gt, class Cb>
-inline Foam::FixedList<Foam::label, 4>
-CGAL::indexedCell<Gt, Cb>::processorsAttached() const
-{
- if (!parallelDualVertex())
- {
- return Foam::FixedList<Foam::label, 4>(Foam::Pstream::myProcNo());
- }
-
- Foam::FixedList<Foam::label, 4> procsAttached
- (
- Foam::Pstream::myProcNo()
- );
-
- for (int i = 0; i < 4; i++)
- {
- if (this->vertex(i)->referred())
- {
- procsAttached[i] = this->vertex(i)->procIndex();
- }
- }
-
- return procsAttached;
-}
-
-
-template<class Gt, class Cb>
-inline Foam::tetCell CGAL::indexedCell<Gt, Cb>::vertexGlobalIndices
-(
- const Foam::globalIndex& globalDelaunayVertexIndices
-) const
-{
- // tetVertexGlobalIndices
- Foam::tetCell tVGI
- = unsortedVertexGlobalIndices(globalDelaunayVertexIndices);
-
- // bubble sort
- for (int i = 0; i < tVGI.size(); i++)
- {
- for (int j = tVGI.size() - 1 ; j > i; j--)
- {
- if (tVGI[j - 1] > tVGI[j])
- {
- Foam::Swap(tVGI[j - 1], tVGI[j]);
- }
- }
- }
-
- return tVGI;
-}
-
-
-template<class Gt, class Cb>
-inline Foam::FixedList<Foam::label, 4>
-CGAL::indexedCell<Gt, Cb>::globallyOrderedCellVertices
-(
- const Foam::globalIndex& globalDelaunayVertexIndices
-) const
-{
- // tetVertexGlobalIndices
- Foam::tetCell tVGI
- = unsortedVertexGlobalIndices(globalDelaunayVertexIndices);
-
- Foam::FixedList<Foam::label, 4> vertexMap(Foam::identity(4));
-
- // bubble sort
- for (int i = 0; i < tVGI.size(); i++)
- {
- for (int j = tVGI.size() - 1 ; j > i; j--)
- {
- if (tVGI[j - 1] > tVGI[j])
- {
- Foam::Swap(tVGI[j - 1], tVGI[j]);
- Foam::Swap(vertexMap[j - 1], vertexMap[j]);
- }
- }
- }
-
- for (int i = 0; i < 4; i++)
- {
- tVGI[i] = vertexMap[i];
- }
-
- return tVGI;
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::internalOrBoundaryDualVertex() const
-{
- return
- (
- this->vertex(0)->internalOrBoundaryPoint()
- || this->vertex(1)->internalOrBoundaryPoint()
- || this->vertex(2)->internalOrBoundaryPoint()
- || this->vertex(3)->internalOrBoundaryPoint()
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::anyInternalOrBoundaryDualVertex() const
-{
- return
- (
- this->vertex(0)->internalOrBoundaryPoint()
- || this->vertex(0)->externalBoundaryPoint()
- || this->vertex(1)->internalOrBoundaryPoint()
- || this->vertex(1)->externalBoundaryPoint()
- || this->vertex(2)->internalOrBoundaryPoint()
- || this->vertex(2)->externalBoundaryPoint()
- || this->vertex(3)->internalOrBoundaryPoint()
- || this->vertex(3)->externalBoundaryPoint()
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::boundaryDualVertex() const
-{
- return
- (
- (
- this->vertex(0)->internalBoundaryPoint()
- || this->vertex(1)->internalBoundaryPoint()
- || this->vertex(2)->internalBoundaryPoint()
- || this->vertex(3)->internalBoundaryPoint()
- )
- && (
- this->vertex(0)->externalBoundaryPoint()
- || this->vertex(1)->externalBoundaryPoint()
- || this->vertex(2)->externalBoundaryPoint()
- || this->vertex(3)->externalBoundaryPoint()
- )
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::featureEdgeDualVertex() const
-{
- return
- (
- this->vertex(0)->featureEdgePoint()
- && this->vertex(1)->featureEdgePoint()
- && this->vertex(2)->featureEdgePoint()
- && this->vertex(3)->featureEdgePoint()
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::nearProcBoundary() const
-{
- return
- (
- this->vertex(0)->nearProcBoundary()
- || this->vertex(1)->nearProcBoundary()
- || this->vertex(2)->nearProcBoundary()
- || this->vertex(3)->nearProcBoundary()
- );
-}
-
-
-template<class Gt, class Cb>
-inline bool CGAL::indexedCell<Gt, Cb>::potentialCoplanarCell() const
-{
- Foam::label nMasters = 0;
- Foam::label nSlaves = 0;
-
- Vertex_handle vM[2];
- Vertex_handle vS[2];
-
- for (Foam::label i = 0; i < 4; ++i)
- {
- Vertex_handle v = this->vertex(i);
-
- if (v->internalBoundaryPoint())
- {
- vM[nMasters] = v;
- nMasters++;
- }
-
- if (v->externalBoundaryPoint())
- {
- vS[nSlaves] = v;
- nSlaves++;
- }
- }
-
- Foam::label nPairs = 0;
-
- if (nMasters == 2 && nSlaves == 2)
- {
- Foam::vector vp0(Foam::vector::zero);
- Foam::vector vp1(Foam::vector::zero);
-
- if
- (
- vM[0]->type() == vS[0]->index()
- && vM[0]->index() == vS[0]->type()
- )
- {
- vp0 = reinterpret_cast<const Foam::point&>(vM[0]->point())
- - reinterpret_cast<const Foam::point&>(vS[0]->point());
- nPairs++;
- }
- else if
- (
- vM[0]->type() == vS[1]->index()
- && vM[0]->index() == vS[1]->type()
- )
- {
- vp0 = reinterpret_cast<const Foam::point&>(vM[0]->point())
- - reinterpret_cast<const Foam::point&>(vS[1]->point());
- nPairs++;
- }
-
- if
- (
- vM[1]->type() == vS[0]->index()
- && vM[1]->index() == vS[0]->type()
- )
- {
- vp1 = reinterpret_cast<const Foam::point&>(vM[1]->point())
- - reinterpret_cast<const Foam::point&>(vS[0]->point());
- nPairs++;
- }
- else if
- (
- vM[1]->type() == vS[1]->index()
- && vM[1]->index() == vS[1]->type()
- )
- {
- vp1 = reinterpret_cast<const Foam::point&>(vM[1]->point())
- - reinterpret_cast<const Foam::point&>(vS[1]->point());
- nPairs++;
- }
-
- if (nPairs == 2)
- {
- if (Foam::vectorTools::areParallel(vp0, vp1))
- {
- Foam::Pout<< "PARALLEL" << Foam::endl;
-
- return true;
- }
- }
- }
-
- return false;
-}
-
-
-// * * * * * * * * * * * * * * * Friend Functions * * * * * * * * * * * * * //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.C
deleted file mode 100644
index 5aa39368740d93ff1203ba896c98a6364755e512..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.C
+++ /dev/null
@@ -1,185 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "indexedVertex.H"
-#include "point.H"
-#include "Istream.H"
-#include "Ostream.H"
-#include "OStringStream.H"
-#include "IStringStream.H"
-
-// * * * * * * * * * * * * * * * * IOStream operators * * * * * * * * * * * //
-
-Foam::Istream& Foam::operator>>
-(
- Istream& is,
- CGAL::Point_3<baseK>& p
-)
-{
-// string data(is);
-//
-// std::istringstream stdIs;
-//
-// CGAL::set_ascii_mode(stdIs);
-//
-// stdIs.str(data);
-//
-// CGAL::Gmpz xNumer, xDenom;
-// CGAL::Gmpz yNumer, yDenom;
-// CGAL::Gmpz zNumer, zDenom;
-//
-// stdIs >> xNumer >> xDenom >> yNumer >> yDenom >> zNumer >> zDenom;
-//
-// CGAL::Gmpq x(xNumer, xDenom);
-// CGAL::Gmpq y(yNumer, yDenom);
-// CGAL::Gmpq z(zNumer, zDenom);
-//
-// p = CGAL::Point_3<baseK>
-// (
-// CGAL::to_double(x),
-// CGAL::to_double(y),
-// CGAL::to_double(z)
-// );
-
- Foam::point pt;
-
- is >> pt.x() >> pt.y() >> pt.z();
-
- p = CGAL::Point_3<baseK>
- (
- pt.x(),
- pt.y(),
- pt.z()
- );
-
- return is;
-}
-
-
-Foam::Ostream& Foam::operator<<
-(
- Ostream& os,
- const CGAL::Point_3<baseK>& p
-)
-{
-// CGAL::Gmpq x(CGAL::to_double(p.x()));
-// CGAL::Gmpq y(CGAL::to_double(p.y()));
-// CGAL::Gmpq z(CGAL::to_double(p.z()));
-//
-// std::ostringstream stdOs;
-//
-// CGAL::set_ascii_mode(stdOs);
-//
-// stdOs<< x.numerator() << ' ' << x.denominator() << ' '
-// << y.numerator() << ' ' << y.denominator() << ' '
-// << z.numerator() << ' ' << z.denominator();
-//
-// os << stdOs.str();
-
- os << CGAL::to_double(p.x()) << ' '
- << CGAL::to_double(p.y()) << ' '
- << CGAL::to_double(p.z());
-
- return os;
-}
-
-
-template<class Gt, class Vb>
-Foam::Ostream& Foam::operator<<
-(
- Ostream& os,
- const CGAL::indexedVertex<Gt, Vb>& p
-)
-{
- os << p.point()
- << p.index()
- << static_cast<int>(p.type())
- << p.procIndex()
- << p.alignment()
- << p.targetCellSize();
-
- return os;
-}
-
-
-template<class Gt, class Vb>
-Foam::Istream& Foam::operator>>
-(
- Istream& is,
- CGAL::indexedVertex<Gt, Vb>& p
-)
-{
- is >> p.point()
- >> p.index();
-
- int type;
- is >> type;
-
- p.type() = static_cast<Foam::indexedVertexEnum::vertexType>(type);
-
- is >> p.procIndex()
- >> p.alignment()
- >> p.targetCellSize();
-
- return is;
-}
-
-
-template<class Gt, class Vb>
-Foam::Ostream& Foam::operator<<
-(
- Ostream& os,
- const InfoProxy<CGAL::indexedVertex<Gt, Vb> >& p
-)
-{
- const CGAL::indexedVertex<Gt, Vb>& iv = p.t_;
-
- const Foam::point pt
- (
- CGAL::to_double(iv.point().x()),
- CGAL::to_double(iv.point().y()),
- CGAL::to_double(iv.point().z())
- );
-
- string referred
- (
- Pstream::myProcNo() == iv.processor_
- ? string(" (local)")
- : string(" (from " + name(iv.processor_) + ")")
- );
-
- os << iv.index_ << " "
- << CGAL::indexedVertex<Gt, Vb>::vertexTypeNames_[iv.type_]
- << " at:" << pt
- << " size:" << iv.targetCellSize_
- << " alignment:" << iv.alignment_
- << referred.c_str()
- << endl;
-
- return os;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.H
deleted file mode 100644
index f39e90761d0666415b2ab03878a65addf72d2744..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertex.H
+++ /dev/null
@@ -1,354 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- indexedVertex
-
-Description
- An indexed form of CGAL::Triangulation_vertex_base_3<K> used to keep
- track of the Delaunay vertices in the tessellation.
-
-SourceFiles
- indexedVertexI.H
- indexedVertex.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef indexedVertex_H
-#define indexedVertex_H
-
-#include <CGAL/Triangulation_3.h>
-#include "CGALTriangulation3DKernel.H"
-#include "tensor.H"
-#include "InfoProxy.H"
-#include "point.H"
-#include "indexedVertexEnum.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace CGAL
-{
-template<class Gt, class Vb> class indexedVertex;
-}
-
-namespace Foam
-{
-
-class Ostream;
-class Istream;
-
-template<class Gt, class Vb> Ostream& operator<<
-(
- Ostream&,
- const Foam::InfoProxy<CGAL::indexedVertex<Gt, Vb> >&
-);
-
-template<class Gt, class Vb> Ostream& operator<<
-(
- Ostream&,
- const CGAL::indexedVertex<Gt, Vb>&
-);
-
-template<class Gt, class Vb> Istream& operator>>
-(
- Istream&,
- CGAL::indexedVertex<Gt, Vb>&
-);
-
-inline Istream& operator>>
-(
- Istream& is,
- CGAL::Point_3<baseK>& p
-);
-
-inline Ostream& operator<<
-(
- Ostream& os,
- const CGAL::Point_3<baseK>& p
-);
-
-} // End namespace Foam
-
-
-namespace CGAL
-{
-
-/*---------------------------------------------------------------------------*\
- Class indexedVertex Declaration
-\*---------------------------------------------------------------------------*/
-
-template<class Gt, class Vb = CGAL::Triangulation_vertex_base_3<Gt> >
-class indexedVertex
-:
- public Foam::indexedVertexEnum,
- public Vb
-{
- // Private data
-
- //- Type of pair-point
- vertexType type_;
-
- //- The index for this Delaunay vertex. For referred vertices, the
- // index is negative for vertices that are the outer (slave) of point
- // pairs
- int index_;
-
- //- Number of the processor that owns this vertex
- int processor_;
-
- //- Required alignment of the dual cell of this vertex
- Foam::tensor alignment_;
-
- //- Target size of the dual cell of this vertex
- Foam::scalar targetCellSize_;
-
- //- Specify whether the vertex is fixed or movable.
-// bool vertexFixed_;
-
-
-public:
-
- typedef typename Vb::Triangulation_data_structure Tds;
- typedef typename Vb::Point Point;
- typedef typename Tds::Vertex_handle Vertex_handle;
- typedef typename Tds::Cell_handle Cell_handle;
-
- template<typename TDS2>
- struct Rebind_TDS
- {
- typedef typename Vb::template Rebind_TDS<TDS2>::Other Vb2;
- typedef indexedVertex<Gt,Vb2> Other;
- };
-
- // Constructors
-
- inline indexedVertex();
-
- inline indexedVertex(const Point& p);
-
- inline indexedVertex(const Point& p, vertexType type);
-
- inline indexedVertex(const Foam::point& p, vertexType type);
-
- inline indexedVertex
- (
- const Point& p,
- int index,
- vertexType type,
- int processor
- );
-
- inline indexedVertex(const Point& p, Cell_handle f);
-
- inline indexedVertex(Cell_handle f);
-
-
- // Member Functions
-
- inline int& index();
-
- inline int index() const;
-
- inline vertexType& type();
-
- inline vertexType type() const;
-
- inline Foam::tensor& alignment();
-
- inline const Foam::tensor& alignment() const;
-
- inline Foam::scalar& targetCellSize();
-
- inline Foam::scalar targetCellSize() const;
-
- inline bool uninitialised() const;
-
- //- Is point a far-point
- inline bool farPoint() const;
-
- //- Is point internal, i.e. not on boundary
- inline bool internalPoint() const;
-
- //- Is this a referred vertex
- inline bool referred() const;
-
- //- Is this a "real" point on this processor, i.e. is internal or part
- // of the boundary description, and not a "far" or "referred" point
- inline bool real() const;
-
- // For referred vertices, what is the original processor index
- inline int procIndex() const;
-
- // For referred vertices, set the original processor index
- inline int& procIndex();
-
- //- Set the point to be internal
- inline void setInternal();
-
- //- Is point internal and near the boundary
- inline bool nearBoundary() const;
-
- //- Set the point to be near the boundary
- inline void setNearBoundary();
-
- //- Is point internal and near a proc boundary
- inline bool nearProcBoundary() const;
-
- //- Set the point to be near a proc boundary
- inline void setNearProcBoundary();
-
- //- Either master or slave of pointPair.
- inline bool boundaryPoint() const;
-
- //- Either original internal point or master of pointPair.
- inline bool internalOrBoundaryPoint() const;
-
- //- Is point near the boundary or part of the boundary definition
- inline bool nearOrOnBoundary() const;
-
- //- Part of a feature point
- inline bool featurePoint() const;
-
- //- Part of a feature edge
- inline bool featureEdgePoint() const;
-
- //- Part of a surface point pair
- inline bool surfacePoint() const;
-
- inline bool internalBoundaryPoint() const;
-
- inline bool externalBoundaryPoint() const;
-
-// //- Is the vertex fixed or movable
-// inline bool isVertexFixed() const;
-//
-// //- Fix the vertex so that it can't be moved
-// inline void setVertexFixed();
-
- inline indexedVertex& operator=(const indexedVertex& rhs)
- {
- Vb::operator=(rhs);
-
- this->type_ = rhs.type();
- this->index_ = rhs.index();
- this->processor_ = rhs.procIndex();
- this->alignment_ = rhs.alignment();
- this->targetCellSize_ = rhs.targetCellSize();
-
- return *this;
- }
-
- inline bool operator==(const indexedVertex& rhs) const
- {
- return
- (
- //this->point() == rhs.point()
- this->type_ == rhs.type()
- && this->index_ == rhs.index()
- && this->processor_ == rhs.procIndex()
- );
- }
-
- inline bool operator!=(const indexedVertex& rhs) const
- {
- return !(*this == rhs);
- }
-
-
- // Info
-
- //- Return info proxy.
- // Used to print indexedVertex information to a stream
- Foam::InfoProxy<indexedVertex<Gt, Vb> > info() const
- {
- return *this;
- }
-
- friend Foam::Ostream& Foam::operator<< <Gt, Vb>
- (
- Foam::Ostream&,
- const Foam::InfoProxy<indexedVertex<Gt, Vb> >&
- );
-
- friend Foam::Ostream& Foam::operator<< <Gt, Vb>
- (
- Foam::Ostream&,
- const indexedVertex<Gt, Vb>&
- );
-
- friend Foam::Istream& Foam::operator>> <Gt, Vb>
- (
- Foam::Istream&,
- indexedVertex<Gt, Vb>&
- );
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace CGAL
-
-// * * * * * * * * * * * * * * * Global Functions * * * * * * * * * * * * * //
-
-#ifdef CGAL_INEXACT
-namespace Foam
-{
- // For inexact representations where the storage type is a double, the data
- // is contiguous. This may not be true for exact number types.
- template<>
- inline bool contiguous
- <
- CGAL::indexedVertex
- <
- K,
- CGAL::Triangulation_vertex_base_3<K>
- >
- >()
- {
- return true;
- }
-
-
- template<>
- inline bool contiguous<CGAL::Triangulation_vertex_base_3<K>::Point>()
- {
- return true;
- }
-
-} // End namespace Foam
-#endif
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "indexedVertexI.H"
-
-#ifdef NoRepository
-# include "indexedVertex.C"
-#endif
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertexEnum.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertexEnum.C
deleted file mode 100644
index ee394b16fa62de04af248b5609c81baa1a2e9295..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertexEnum.C
+++ /dev/null
@@ -1,88 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "indexedVertexEnum.H"
-#include "Pstream.H"
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-template<>
-const char*
-Foam::NamedEnum<Foam::indexedVertexEnum::vertexType, 10>::names[] =
-{
- "Unassigned",
- "Internal",
- "InternalNearBoundary",
- "InternalSurface",
- "InternalFeatureEdge",
- "InternalFeaturePoint",
- "ExternalSurface",
- "ExternalFeatureEdge",
- "ExternalFeaturePoint",
- "Far"
-};
-
-const Foam::NamedEnum<Foam::indexedVertexEnum::vertexType, 10>
-Foam::indexedVertexEnum::vertexTypeNames_;
-
-
-template<>
-const char*
-Foam::NamedEnum<Foam::indexedVertexEnum::vertexMotion, 2>::names[] =
-{
- "fixed",
- "movable"
-};
-
-const Foam::NamedEnum<Foam::indexedVertexEnum::vertexMotion, 2>
-vertexMotionNames_;
-
-
-Foam::Ostream& Foam::operator<<
-(
- Ostream& os,
- const Foam::indexedVertexEnum::vertexType& v
-)
-{
- os << static_cast<int>(v);
-
- return os;
-}
-
-Foam::Istream& Foam::operator>>
-(
- Istream& is,
- Foam::indexedVertexEnum::vertexType& v
-)
-{
- int type;
- is >> type;
-
- v = static_cast<Foam::indexedVertexEnum::vertexType>(type);
-
- return is;
-}
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertexEnum.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertexEnum.H
deleted file mode 100644
index c597d8a17307cf790fee28c068f857c7c5f68691..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertexEnum.H
+++ /dev/null
@@ -1,95 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- indexedVertexEnum
-
-Description
-
-SourceFiles
- indexedVertexEnum.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef indexedVertexEnum_H
-#define indexedVertexEnum_H
-
-#include "NamedEnum.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-class indexedVertexEnum
-{
-public:
-
- enum vertexType
- {
- vtUnassigned = 0,
- vtInternal = 1,
- vtInternalNearBoundary = 2,
- vtInternalSurface = 3,
- vtInternalFeatureEdge = 4,
- vtInternalFeaturePoint = 5,
- vtExternalSurface = 6,
- vtExternalFeatureEdge = 7,
- vtExternalFeaturePoint = 8,
- vtFar = 9
- };
-
- enum vertexMotion
- {
- fixed = 0,
- movable = 1
- };
-
- static const Foam::NamedEnum<vertexType, 10> vertexTypeNames_;
-
- static const Foam::NamedEnum<vertexMotion, 2> vertexMotionNames_;
-
- friend Ostream& operator<<(Foam::Ostream&, const vertexType&);
-
- friend Istream& operator>>(Foam::Istream&, vertexType&);
-};
-
-
-template<>
-inline bool contiguous<indexedVertexEnum>()
-{
- return true;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertexI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertexI.H
deleted file mode 100644
index ea9e4db6d4630a70e75bc173a1a4daf5674eb6d7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/indexedVertex/indexedVertexI.H
+++ /dev/null
@@ -1,334 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "Pstream.H"
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex()
-:
- Vb(),
- type_(vtUnassigned),
- index_(vtUnassigned),
- processor_(Foam::Pstream::myProcNo()),
- alignment_(Foam::tensor::zero),
- targetCellSize_(0.0)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex(const Point& p)
-:
- Vb(p),
- type_(vtUnassigned),
- index_(vtUnassigned),
- processor_(Foam::Pstream::myProcNo()),
- alignment_(Foam::tensor::zero),
- targetCellSize_(0.0)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex
-(
- const Point& p,
- vertexType type
-)
-:
- Vb(p),
- type_(type),
- index_(-1),
- processor_(Foam::Pstream::myProcNo()),
- alignment_(Foam::tensor::zero),
- targetCellSize_(0.0)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex
-(
- const Foam::point& p,
- vertexType type
-)
-:
- Vb(Point(p.x(), p.y(), p.z())),
- type_(type),
- index_(-1),
- processor_(Foam::Pstream::myProcNo()),
- alignment_(Foam::tensor::zero),
- targetCellSize_(0.0)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex
-(
- const Point& p,
- int index,
- vertexType type,
- int processor
-)
-:
- Vb(p),
- type_(type),
- index_(index),
- processor_(processor),
- alignment_(Foam::tensor::zero),
- targetCellSize_(0.0)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex(const Point& p, Cell_handle f)
-:
- Vb(f, p),
- type_(vtUnassigned),
- index_(vtUnassigned),
- processor_(Foam::Pstream::myProcNo()),
- alignment_(Foam::tensor::zero),
- targetCellSize_(0.0)
-{}
-
-
-template<class Gt, class Vb>
-inline CGAL::indexedVertex<Gt, Vb>::indexedVertex(Cell_handle f)
-:
- Vb(f),
- type_(vtUnassigned),
- index_(vtUnassigned),
- processor_(Foam::Pstream::myProcNo()),
- alignment_(Foam::tensor::zero),
- targetCellSize_(0.0)
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-template<class Gt, class Vb>
-inline int& CGAL::indexedVertex<Gt, Vb>::index()
-{
- return index_;
-}
-
-
-template<class Gt, class Vb>
-inline int CGAL::indexedVertex<Gt, Vb>::index() const
-{
- return index_;
-}
-
-
-template<class Gt, class Vb>
-inline Foam::indexedVertexEnum::vertexType&
-CGAL::indexedVertex<Gt, Vb>::type()
-{
- return type_;
-}
-
-
-template<class Gt, class Vb>
-inline Foam::indexedVertexEnum::vertexType
-CGAL::indexedVertex<Gt, Vb>::type() const
-{
- return type_;
-}
-
-
-template<class Gt, class Vb>
-inline Foam::tensor& CGAL::indexedVertex<Gt, Vb>::alignment()
-{
- return alignment_;
-}
-
-
-template<class Gt, class Vb>
-inline const Foam::tensor& CGAL::indexedVertex<Gt, Vb>::alignment() const
-{
- return alignment_;
-}
-
-
-template<class Gt, class Vb>
-inline Foam::scalar& CGAL::indexedVertex<Gt, Vb>::targetCellSize()
-{
- return targetCellSize_;
-}
-
-
-template<class Gt, class Vb>
-inline Foam::scalar CGAL::indexedVertex<Gt, Vb>::targetCellSize() const
-{
- return targetCellSize_;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::uninitialised() const
-{
- return type_ == vtUnassigned;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::farPoint() const
-{
- return type_ == vtFar;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::internalPoint() const
-{
- return type_ == vtInternal || type_ == vtInternalNearBoundary;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::referred() const
-{
- // Can't be zero as the first few points are far points which won't be
- // referred
- //return index_ < 0;
-
- // processor_ will be take the value of the processor that this vertex is
- // from, so it cannot be on this processor.
- return processor_ != Foam::Pstream::myProcNo();
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::real() const
-{
- return (internalPoint() || boundaryPoint()) && !referred();
-}
-
-
-template<class Gt, class Vb>
-inline int CGAL::indexedVertex<Gt, Vb>::procIndex() const
-{
- return processor_;
-}
-
-
-template<class Gt, class Vb>
-inline int& CGAL::indexedVertex<Gt, Vb>::procIndex()
-{
- return processor_;
-}
-
-
-template<class Gt, class Vb>
-inline void CGAL::indexedVertex<Gt, Vb>::setInternal()
-{
- type_ = vtInternal;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::nearBoundary() const
-{
- return type_ == vtInternalNearBoundary;
-}
-
-
-template<class Gt, class Vb>
-inline void CGAL::indexedVertex<Gt, Vb>::setNearBoundary()
-{
- type_ = vtInternalNearBoundary;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::boundaryPoint() const
-{
- return type_ >= vtInternalSurface && !farPoint();
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::internalOrBoundaryPoint() const
-{
- return internalPoint() || internalBoundaryPoint();
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::nearOrOnBoundary() const
-{
- return boundaryPoint() || nearBoundary();
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::internalBoundaryPoint() const
-{
- return type_ >= vtInternalSurface && type_ <= vtInternalFeaturePoint;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::externalBoundaryPoint() const
-{
- return type_ >= vtExternalSurface && type_ <= vtExternalFeaturePoint;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::featurePoint() const
-{
- return type_ == vtInternalFeaturePoint || type_ == vtExternalFeaturePoint;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::featureEdgePoint() const
-{
- return type_ == vtInternalFeatureEdge || type_ == vtExternalFeatureEdge;
-}
-
-
-template<class Gt, class Vb>
-inline bool CGAL::indexedVertex<Gt, Vb>::surfacePoint() const
-{
- return type_ == vtInternalSurface || type_ == vtExternalSurface;
-}
-
-
-//template<class Gt, class Vb>
-//inline bool CGAL::indexedVertex<Gt, Vb>::isVertexFixed() const
-//{
-// return vertexFixed_;
-//}
-//
-//
-//template<class Gt, class Vb>
-//inline void CGAL::indexedVertex<Gt, Vb>::setVertexFixed()
-//{
-// vertexFixed_ = true;
-//}
-
-
-// * * * * * * * * * * * * * * * Friend Functions * * * * * * * * * * * * * //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/pointConversion.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/pointConversion.H
deleted file mode 100644
index 6242a3a6feab4f4ccd89542efe3bca4c29a07a55..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/pointConversion.H
+++ /dev/null
@@ -1,99 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- pointConversion
-
-Description
-
- Conversion functions between point (FOAM::) and Point (CGAL)
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef pointConversion_H
-#define pointConversion_H
-
-#include "point.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#ifdef CGAL_INEXACT
-
- // Define Point to be contiguous for inexact (double storage) kernel
- typedef const Foam::point& pointFromPoint;
- typedef const CGAL::Triangulation_vertex_base_3<K>::Point& PointFrompoint;
-
-#else
-
- typedef Foam::point pointFromPoint;
- typedef CGAL::Triangulation_vertex_base_3<K>::Point PointFrompoint;
-
-#endif
-
-namespace Foam
-{
-
-#ifdef CGAL_INEXACT
-
- template<typename Point>
- inline pointFromPoint topoint(const Point& P)
- {
- return reinterpret_cast<pointFromPoint>(P);
- }
-
- template<typename Point>
- inline PointFrompoint toPoint(const Foam::point& p)
- {
- return reinterpret_cast<PointFrompoint>(p);
- }
-
-#else
-
- template<typename Point>
- inline pointFromPoint topoint(const Point& P)
- {
- return Foam::point
- (
- CGAL::to_double(P.x()),
- CGAL::to_double(P.y()),
- CGAL::to_double(P.z())
- );
- }
-
- template<typename Point>
- inline Point toPoint(const Foam::point& p)
- {
- return Point(p.x(), p.y(), p.z());
- }
-
-#endif
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/pointFeatureEdgesTypes.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/pointFeatureEdgesTypes.H
deleted file mode 100644
index 5bae06d86f198c3e8bd8ec49cea7bed9c3168cf7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformalVoronoiMesh/pointFeatureEdgesTypes.H
+++ /dev/null
@@ -1,93 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- pointFeatureEdgesTypes
-
-Description
- struct for holding information on the types of feature edges attached to
- feature points
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef pointFeatureEdgesTypes_H
-#define pointFeatureEdgesTypes_H
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class pointFeatureEdgesTypes Declaration
-\*---------------------------------------------------------------------------*/
-
-//- Hold the types of feature edges attached to the point.
-class pointFeatureEdgesTypes
-:
- public HashTable<label, extendedFeatureEdgeMesh::edgeStatus>
-{
- label pointLabel_;
-
-public:
-
- pointFeatureEdgesTypes(const label pointLabel)
- :
- HashTable<label, extendedFeatureEdgeMesh::edgeStatus>(),
- pointLabel_(pointLabel)
- {}
-
-
- friend Ostream& operator<<(Ostream& os, const pointFeatureEdgesTypes& p)
- {
- os << "Point = " << p.pointLabel_ << endl;
-
- for
- (
- HashTable<label, extendedFeatureEdgeMesh::edgeStatus>
- ::const_iterator iter = p.cbegin();
- iter != p.cend();
- ++iter
- )
- {
- os << " "
- << extendedFeatureEdgeMesh::edgeStatusNames_[iter.key()]
- << " = "
- << iter()
- << endl;
- }
-
- return os;
- }
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfaces.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfaces.C
deleted file mode 100644
index 64f753fb99d102e5309f06c345f36c4bd996c590..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfaces.C
+++ /dev/null
@@ -1,895 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "conformationSurfaces.H"
-#include "conformalVoronoiMesh.H"
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::conformationSurfaces::conformationSurfaces
-(
- const Time& runTime,
- Random& rndGen,
- const searchableSurfaces& allGeometry,
- const dictionary& surfaceConformationDict
-)
-:
- runTime_(runTime),
- rndGen_(rndGen),
- allGeometry_(allGeometry),
- features_(),
- locationInMesh_(surfaceConformationDict.lookup("locationInMesh")),
- surfaces_(),
- allGeometryToSurfaces_(),
- baffleSurfaces_(),
- patchNames_(0),
- patchOffsets_(),
- globalBounds_(),
- referenceVolumeTypes_(0)
-{
- const dictionary& surfacesDict
- (
- surfaceConformationDict.subDict("geometryToConformTo")
- );
-
- const dictionary& additionalFeaturesDict
- (
- surfaceConformationDict.subDict("additionalFeatures")
- );
-
- Info<< nl << "Reading geometryToConformTo" << endl;
-
- surfaces_.setSize(surfacesDict.size(), -1);
-
- allGeometryToSurfaces_.setSize(allGeometry_.size(), -1);
-
- baffleSurfaces_.setSize(surfacesDict.size(), false);
-
- // Features may be attached to host surfaces or independent
- features_.setSize(surfacesDict.size() + additionalFeaturesDict.size());
-
- label featureI = 0;
-
- patchOffsets_.setSize(surfacesDict.size(), -1);
-
- label surfI = 0;
-
- forAllConstIter(dictionary, surfacesDict, iter)
- {
- word surfaceName = iter().keyword();
-
- surfaces_[surfI] = allGeometry_.findSurfaceID(surfaceName);
-
- allGeometryToSurfaces_[surfaces_[surfI]] = surfI;
-
- if (surfaces_[surfI] < 0)
- {
- FatalErrorIn("Foam::conformationSurfaces::conformationSurfaces")
- << "No surface " << iter().keyword() << " found. "
- << "Valid geometry is " << nl << allGeometry_.names()
- << exit(FatalError);
- }
-
- Info<< nl << " " << iter().keyword() << endl;
-
- patchOffsets_[surfI] = patchNames_.size();
-
- patchNames_.append(allGeometry.regionNames()[surfaces_[surfI]]);
-
- const dictionary& surfaceSubDict(surfacesDict.subDict(surfaceName));
-
- baffleSurfaces_[surfI] = Switch
- (
- surfaceSubDict.lookupOrDefault("baffleSurface", false)
- );
-
- if (!baffleSurfaces_[surfI])
- {
- if (!allGeometry_[surfaces_[surfI]].hasVolumeType())
- {
- WarningIn("conformationSurfaces::conformationSurfaces(..)")
- << "Non-baffle surface "
- << allGeometry_[surfaces_[surfI]].name()
- << " does not allow inside/outside queries."
- << " This usually is an error." << endl;
- }
- }
-
- word featureMethod = surfaceSubDict.lookup("featureMethod");
-
- if (featureMethod == "extendedFeatureEdgeMesh")
- {
- fileName feMeshName
- (
- surfaceSubDict.lookup("extendedFeatureEdgeMesh")
- );
-
- Info<< " features: " << feMeshName<< endl;
-
- features_.set
- (
- featureI++,
- new extendedFeatureEdgeMesh
- (
- IOobject
- (
- feMeshName,
- runTime_.time().constant(),
- "extendedFeatureEdgeMesh",
- runTime_.time(),
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- )
- )
- );
- }
- else if (featureMethod == "extractFeatures")
- {
- notImplemented
- (
- "conformationSurfaces::conformationSurfaces, "
- "else if (featureMethod == \"extractFeatures\")"
- );
- }
- else if (featureMethod == "none")
- {
- // Currently nothing to do
- }
- else
- {
- FatalErrorIn("Foam::conformationSurfaces::conformationSurfaces")
- << "No valid featureMethod found for surface " << surfaceName
- << nl << "Use \"extendedFeatureEdgeMesh\" "
- << "or \"extractFeatures\"."
- << exit(FatalError);
- }
-
- surfI++;
- }
-
- if (!additionalFeaturesDict.empty())
- {
- Info<< nl << "Reading additionalFeatures" << endl;
- }
-
- forAllConstIter(dictionary, additionalFeaturesDict, iter)
- {
- word featureName = iter().keyword();
-
- Info<< nl << " " << iter().keyword() << endl;
-
- const dictionary& featureSubDict
- (
- additionalFeaturesDict.subDict(featureName)
- );
-
- word featureMethod = featureSubDict.lookupOrDefault
- (
- "featureMethod",
- word("none")
- );
-
- if (featureMethod == "extendedFeatureEdgeMesh")
- {
- fileName feMeshName
- (
- featureSubDict.lookup("extendedFeatureEdgeMesh")
- );
-
- Info<< " features: " << feMeshName << endl;
-
- features_.set
- (
- featureI++,
- new extendedFeatureEdgeMesh
- (
- IOobject
- (
- feMeshName,
- runTime_.time().constant(),
- "extendedFeatureEdgeMesh",
- runTime_.time(),
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- )
- )
- );
- }
- }
-
- // Remove unnecessary space from the features list
- features_.setSize(featureI);
-
- globalBounds_ = treeBoundBox
- (
- searchableSurfacesQueries::bounds(allGeometry_, surfaces_)
- );
-
- // Extend the global bounds to stop the bound box sitting on the surfaces
- // to be conformed to
- //globalBounds_ = globalBounds_.extend(rndGen_, 1e-4);
-
- vector newSpan = 1e-4*globalBounds_.span();
-
- globalBounds_.min() -= newSpan;
- globalBounds_.max() += newSpan;
-
- // Look at all surfaces at determine whether the locationInMesh point is
- // inside or outside each, to establish a signature for the domain to be
- // meshed.
-
- referenceVolumeTypes_.setSize
- (
- surfaces_.size(),
- searchableSurface::UNKNOWN
- );
-
-
- Info<< endl
- << "Testing for locationInMesh " << locationInMesh_ << endl;
-
- forAll(surfaces_, s)
- {
- const searchableSurface& surface(allGeometry_[surfaces_[s]]);
-
- if (surface.hasVolumeType())
- {
- pointField pts(1, locationInMesh_);
-
- List<searchableSurface::volumeType> vTypes
- (
- pts.size(),
- searchableSurface::UNKNOWN
- );
-
- surface.getVolumeType(pts, vTypes);
-
- referenceVolumeTypes_[s] = vTypes[0];
-
- Info<< " is "
- << searchableSurface::volumeTypeNames[referenceVolumeTypes_[s]]
- << " surface " << surface.name()
- << endl;
- }
- }
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::conformationSurfaces::~conformationSurfaces()
-{}
-
-
-// * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * * //
-
-bool Foam::conformationSurfaces::overlaps(const treeBoundBox& bb) const
-{
- forAll(surfaces_, s)
- {
- if (allGeometry_[surfaces_[s]].overlaps(bb))
- {
- return true;
- }
- }
-
- return false;
-}
-
-
-Foam::Field<bool> Foam::conformationSurfaces::inside
-(
- const pointField& samplePts
-) const
-{
- return wellInside(samplePts, scalarField(samplePts.size(), 0.0));
-}
-
-
-bool Foam::conformationSurfaces::inside
-(
- const point& samplePt
-) const
-{
- return wellInside(pointField(1, samplePt), scalarField(1, 0))[0];
-}
-
-
-Foam::Field<bool> Foam::conformationSurfaces::outside
-(
- const pointField& samplePts
-) const
-{
- return wellOutside(samplePts, scalarField(samplePts.size(), 0.0));
-}
-
-
-bool Foam::conformationSurfaces::outside
-(
- const point& samplePt
-) const
-{
- return !inside(samplePt);
-}
-
-
-Foam::Field<bool> Foam::conformationSurfaces::wellInOutSide
-(
- const pointField& samplePts,
- const scalarField& testDistSqr,
- bool testForInside
-) const
-{
- List<List<searchableSurface::volumeType> > surfaceVolumeTests
- (
- surfaces_.size(),
- List<searchableSurface::volumeType>
- (
- samplePts.size(),
- searchableSurface::UNKNOWN
- )
- );
-
- // Get lists for the volumeTypes for each sample wrt each surface
- forAll(surfaces_, s)
- {
- const searchableSurface& surface(allGeometry_[surfaces_[s]]);
-
- if (surface.hasVolumeType())
- {
- surface.getVolumeType(samplePts, surfaceVolumeTests[s]);
- }
- }
-
- // Compare the volumeType result for each point wrt to each surface with the
- // reference value and if the points are inside the surface by a given
- // distanceSquared
-
- // Assume that the point is wellInside until demonstrated otherwise.
- Field<bool> inOutSidePoint(samplePts.size(), testForInside);
-
- //Check if the points are inside the surface by the given distance squared
-
- labelList hitSurfaces;
-
- List<pointIndexHit> hitInfo;
-
- searchableSurfacesQueries::findNearest
- (
- allGeometry_,
- surfaces_,
- samplePts,
- testDistSqr,
- hitSurfaces,
- hitInfo
- );
-
- forAll(samplePts, i)
- {
- const pointIndexHit& pHit = hitInfo[i];
-
- if (pHit.hit())
- {
- // If the point is within range of the surface, then it can't be
- // well (in|out)side
- inOutSidePoint[i] = false;
-
- continue;
- }
-
- forAll(surfaces_, s)
- {
- // If one of the pattern tests is failed, then the point cannot be
- // inside, therefore, if this is a testForInside = true call, the
- // result is false. If this is a testForInside = false call, then
- // the result is true.
- if (surfaceVolumeTests[s][i] != referenceVolumeTypes_[s])
- {
- inOutSidePoint[i] = !testForInside;
-
- break;
- }
- }
- }
-
- return inOutSidePoint;
-}
-
-
-Foam::Field<bool> Foam::conformationSurfaces::wellInside
-(
- const pointField& samplePts,
- const scalarField& testDistSqr
-) const
-{
- return wellInOutSide(samplePts, testDistSqr, true);
-}
-
-
-bool Foam::conformationSurfaces::wellInside
-(
- const point& samplePt,
- scalar testDistSqr
-) const
-{
- return wellInside(pointField(1, samplePt), scalarField(1, testDistSqr))[0];
-}
-
-
-Foam::Field<bool> Foam::conformationSurfaces::wellOutside
-(
- const pointField& samplePts,
- const scalarField& testDistSqr
-) const
-{
- return wellInOutSide(samplePts, testDistSqr, false);
-}
-
-
-bool Foam::conformationSurfaces::wellOutside
-(
- const point& samplePt,
- scalar testDistSqr
-) const
-{
- return wellOutside(pointField(1, samplePt), scalarField(1, testDistSqr))[0];
-}
-
-
-bool Foam::conformationSurfaces::findSurfaceAnyIntersection
-(
- const point& start,
- const point& end
-) const
-{
- labelList hitSurfaces;
- List<pointIndexHit> hitInfo;
-
- searchableSurfacesQueries::findAnyIntersection
- (
- allGeometry_,
- surfaces_,
- pointField(1, start),
- pointField(1, end),
- hitSurfaces,
- hitInfo
- );
-
- return hitInfo[0].hit();
-}
-
-
-void Foam::conformationSurfaces::findSurfaceAnyIntersection
-(
- const point& start,
- const point& end,
- pointIndexHit& surfHit,
- label& hitSurface
-) const
-{
- labelList hitSurfaces;
- List<pointIndexHit> hitInfo;
-
- searchableSurfacesQueries::findAnyIntersection
- (
- allGeometry_,
- surfaces_,
- pointField(1, start),
- pointField(1, end),
- hitSurfaces,
- hitInfo
- );
-
- surfHit = hitInfo[0];
-
- if (surfHit.hit())
- {
- // hitSurfaces has returned the index of the entry in surfaces_ that was
- // found, not the index of the surface in allGeometry_, translating this
- // to allGeometry_
-
- hitSurface = surfaces_[hitSurfaces[0]];
- }
-}
-
-
-void Foam::conformationSurfaces::findSurfaceNearestIntersection
-(
- const point& start,
- const point& end,
- pointIndexHit& surfHit,
- label& hitSurface
-) const
-{
- labelList hitSurfacesStart;
- List<pointIndexHit> hitInfoStart;
- labelList hitSurfacesEnd;
- List<pointIndexHit> hitInfoEnd;
-
- searchableSurfacesQueries::findNearestIntersection
- (
- allGeometry_,
- surfaces_,
- pointField(1, start),
- pointField(1, end),
- hitSurfacesStart,
- hitInfoStart,
- hitSurfacesEnd,
- hitInfoEnd
- );
-
- surfHit = hitInfoStart[0];
-
- if (surfHit.hit())
- {
- // hitSurfaces has returned the index of the entry in surfaces_ that was
- // found, not the index of the surface in allGeometry_, translating this
- // to allGeometry_
-
- hitSurface = surfaces_[hitSurfacesStart[0]];
- }
-}
-
-
-void Foam::conformationSurfaces::findSurfaceNearest
-(
- const point& sample,
- scalar nearestDistSqr,
- pointIndexHit& surfHit,
- label& hitSurface
-) const
-{
- labelList hitSurfaces;
- List<pointIndexHit> surfaceHits;
-
- searchableSurfacesQueries::findNearest
- (
- allGeometry_,
- surfaces_,
- pointField(1, sample),
- scalarField(1, nearestDistSqr),
- hitSurfaces,
- surfaceHits
- );
-
- surfHit = surfaceHits[0];
-
- if (surfHit.hit())
- {
- // hitSurfaces has returned the index of the entry in surfaces_ that was
- // found, not the index of the surface in allGeometry_, translating this
- // to allGeometry_
-
- hitSurface = surfaces_[hitSurfaces[0]];
- }
-}
-
-
-void Foam::conformationSurfaces::findSurfaceNearest
-(
- const pointField& samples,
- const scalarField& nearestDistSqr,
- List<pointIndexHit>& surfaceHits,
- labelList& hitSurfaces
-) const
-{
- searchableSurfacesQueries::findNearest
- (
- allGeometry_,
- surfaces_,
- samples,
- nearestDistSqr,
- hitSurfaces,
- surfaceHits
- );
-
- forAll(surfaceHits, i)
- {
- if (surfaceHits[i].hit())
- {
- // hitSurfaces has returned the index of the entry in surfaces_ that
- // was found, not the index of the surface in allGeometry_,
- // translating this to the surface in allGeometry_.
-
- hitSurfaces[i] = surfaces_[hitSurfaces[i]];
- }
- }
-}
-
-
-void Foam::conformationSurfaces::findFeaturePointNearest
-(
- const point& sample,
- scalar nearestDistSqr,
- pointIndexHit& fpHit,
- label& featureHit
-) const
-{
- // Work arrays
- scalar minDistSqr = nearestDistSqr;
- pointIndexHit hitInfo;
-
- forAll(features_, testI)
- {
- features_[testI].nearestFeaturePoint
- (
- sample,
- minDistSqr,
- hitInfo
- );
-
- if (hitInfo.hit())
- {
- minDistSqr = magSqr(hitInfo.hitPoint()- sample);
- fpHit = hitInfo;
- featureHit = testI;
- }
- }
-}
-
-
-void Foam::conformationSurfaces::findEdgeNearest
-(
- const point& sample,
- scalar nearestDistSqr,
- pointIndexHit& edgeHit,
- label& featureHit
-) const
-{
- pointField samples(1, sample);
- scalarField nearestDistsSqr(1, nearestDistSqr);
-
- List<pointIndexHit> edgeHits;
- labelList featuresHit;
-
- findEdgeNearest
- (
- samples,
- nearestDistsSqr,
- edgeHits,
- featuresHit
- );
-
- edgeHit = edgeHits[0];
- featureHit = featuresHit[0];
-}
-
-
-void Foam::conformationSurfaces::findEdgeNearest
-(
- const pointField& samples,
- const scalarField& nearestDistsSqr,
- List<pointIndexHit>& edgeHits,
- labelList& featuresHit
-) const
-{
- // Initialise
- featuresHit.setSize(samples.size());
- featuresHit = -1;
- edgeHits.setSize(samples.size());
-
- // Work arrays
- scalarField minDistSqr(nearestDistsSqr);
- List<pointIndexHit> hitInfo(samples.size());
-
- forAll(features_, testI)
- {
- features_[testI].nearestFeatureEdge
- (
- samples,
- minDistSqr,
- hitInfo
- );
-
- // Update minDistSqr and arguments
- forAll(hitInfo, pointI)
- {
- if (hitInfo[pointI].hit())
- {
- minDistSqr[pointI] = magSqr
- (
- hitInfo[pointI].hitPoint()
- - samples[pointI]
- );
- edgeHits[pointI] = hitInfo[pointI];
- featuresHit[pointI] = testI;
- }
- }
- }
-}
-
-
-void Foam::conformationSurfaces::findEdgeNearestByType
-(
- const point& sample,
- scalar nearestDistSqr,
- List<pointIndexHit>& edgeHits,
- List<label>& featuresHit
-) const
-{
- // Initialise
- featuresHit.setSize(extendedFeatureEdgeMesh::nEdgeTypes);
- featuresHit = -1;
- edgeHits.setSize(extendedFeatureEdgeMesh::nEdgeTypes);
-
- // Work arrays
- scalarField minDistSqr(extendedFeatureEdgeMesh::nEdgeTypes, nearestDistSqr);
- List<pointIndexHit> hitInfo(extendedFeatureEdgeMesh::nEdgeTypes);
-
- forAll(features_, testI)
- {
- features_[testI].nearestFeatureEdgeByType
- (
- sample,
- minDistSqr,
- hitInfo
- );
-
- // Update minDistSqr and arguments
- forAll(hitInfo, typeI)
- {
- if (hitInfo[typeI].hit())
- {
- minDistSqr[typeI] = magSqr(hitInfo[typeI].hitPoint() - sample);
- edgeHits[typeI] = hitInfo[typeI];
- featuresHit[typeI] = testI;
- }
- }
- }
-}
-
-
-void Foam::conformationSurfaces::findAllNearestEdges
-(
- const point& sample,
- const scalar searchRadiusSqr,
- List<List<pointIndexHit> >& edgeHitsByFeature,
- List<label>& featuresHit
-) const
-{
- // Initialise
- //featuresHit.setSize(features_.size());
- //featuresHit = -1;
- //edgeHitsByFeature.setSize(features_.size());
-
- // Work arrays
- List<pointIndexHit> hitInfo(extendedFeatureEdgeMesh::nEdgeTypes);
-
- forAll(features_, testI)
- {
- features_[testI].allNearestFeatureEdges
- (
- sample,
- searchRadiusSqr,
- hitInfo
- );
-
- bool anyHit = false;
- forAll(hitInfo, hitI)
- {
- if (hitInfo[hitI].hit())
- {
- anyHit = true;
- }
- }
-
- if (anyHit)
- {
- edgeHitsByFeature.append(hitInfo);
- featuresHit.append(testI);
- }
- }
-}
-
-
-void Foam::conformationSurfaces::writeFeatureObj(const fileName& prefix) const
-{
- OFstream ftStr(runTime_.time().path()/prefix + "_allFeatures.obj");
-
- Pout<< nl << "Writing all features to " << ftStr.name() << endl;
-
- label verti = 0;
-
- forAll(features_, i)
- {
- const extendedFeatureEdgeMesh& fEM(features_[i]);
- const pointField pts(fEM.points());
- const edgeList eds(fEM.edges());
-
- ftStr << "g " << fEM.name() << endl;
-
- forAll(eds, j)
- {
- const edge& e = eds[j];
-
- meshTools::writeOBJ(ftStr, pts[e[0]]); verti++;
- meshTools::writeOBJ(ftStr, pts[e[1]]); verti++;
- ftStr << "l " << verti-1 << ' ' << verti << endl;
- }
- }
-}
-
-
-Foam::label Foam::conformationSurfaces::findPatch
-(
- const point& ptA,
- const point& ptB
-) const
-{
- pointIndexHit surfHit;
- label hitSurface;
-
- findSurfaceAnyIntersection(ptA, ptB, surfHit, hitSurface);
-
- if (!surfHit.hit())
- {
- return -1;
- }
-
- labelList surfLocalRegion;
-
- allGeometry_[hitSurface].getRegion
- (
- List<pointIndexHit>(1, surfHit),
- surfLocalRegion
- );
-
- return
- surfLocalRegion[0] + patchOffsets_[allGeometryToSurfaces_[hitSurface]];
-}
-
-
-Foam::label Foam::conformationSurfaces::findPatch(const point& pt) const
-{
- pointIndexHit surfHit;
- label hitSurface;
-
- findSurfaceNearest
- (
- pt,
- sqr(GREAT),
- surfHit,
- hitSurface
- );
-
- if (!surfHit.hit())
- {
- return -1;
- }
-
- labelList surfLocalRegion;
-
- allGeometry_[hitSurface].getRegion
- (
- List<pointIndexHit>(1, surfHit),
- surfLocalRegion
- );
-
- return
- surfLocalRegion[0] + patchOffsets_[allGeometryToSurfaces_[hitSurface]];
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfaces.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfaces.H
deleted file mode 100644
index 3acb10d53a86eefb61b311a240cd89244c82c815..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfaces.H
+++ /dev/null
@@ -1,328 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::conformationSurfaces
-
-Description
-
-SourceFiles
- conformationSurfacesI.H
- conformationSurfaces.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef conformationSurfaces_H
-#define conformationSurfaces_H
-
-#include "searchableSurfaces.H"
-#include "searchableSurfacesQueries.H"
-#include "extendedFeatureEdgeMesh.H"
-#include "boolList.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class conformationSurfaces Declaration
-\*---------------------------------------------------------------------------*/
-
-class conformationSurfaces
-{
- // Private data
-
- const Time& runTime_;
-
- Random& rndGen_;
-
- //- Reference to the searchableSurfaces object holding all geometry data
- const searchableSurfaces& allGeometry_;
-
- //- A list of extendedFeatureEdgeMesh
- PtrList<extendedFeatureEdgeMesh> features_;
-
- //- The location in the mesh that specifies which portion of surfaces is
- // to be meshed.
- point locationInMesh_;
-
- //- Indices of surfaces in allGeometry that are to be conformed to
- labelList surfaces_;
-
- //- Reverse mapping, which entry in surfaces corresponds to the surface
- // in allGeometry specified by the list index. -1 for a surface that
- // isn't used.
- labelList allGeometryToSurfaces_;
-
- //- A boolean value for each surface to be conformed to specifying if it
- // is to be treated as a baffle
- boolList baffleSurfaces_;
-
- //- A flat list of all of the names of the patches from all of the
- // surfaces to be reproduced in the meshed geometry
- List<word> patchNames_;
-
- //- The offset between the patch indices of the individual surface and
- // the entry in the overall patch list
- labelList patchOffsets_;
-
- //- The overall boundBox of all of the surfaces to be conformed to
- treeBoundBox globalBounds_;
-
- //- The pattern/signature of volumeTypes representing a point in the
- // domain to be meshed
- List<searchableSurface::volumeType> referenceVolumeTypes_;
-
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- conformationSurfaces(const conformationSurfaces&);
-
- //- Disallow default bitwise assignment
- void operator=(const conformationSurfaces&);
-
-
-public:
-
- // Constructors
-
- //- Construct from dictionary and references to conformalVoronoiMesh and
- // searchableSurfaces
- conformationSurfaces
- (
- const Time& runTime,
- Random& rndGen,
- const searchableSurfaces& allGeometry,
- const dictionary& surfaceConformationDict
- );
-
- //- Destructor
- ~conformationSurfaces();
-
-
- // Member Functions
-
- // Access
-
- //- Return reference to the searchableSurfaces object containing all
- // of the geometry
- inline const searchableSurfaces& geometry() const;
-
- //- Return the object holding the feature points and edges
- inline const PtrList<extendedFeatureEdgeMesh>& features() const;
-
- //- Return the location to mesh
- inline const point& locationInMesh() const;
-
- //- Return the surface indices
- inline const labelList& surfaces() const;
-
- //- Return the patch names
- inline const List<word>& patchNames() const;
-
- //- Return the global bounds
- inline const treeBoundBox& globalBounds() const;
-
-
- // Query
-
- //- Check if the supplied bound box overlaps any part of any of
- // the surfaces
- bool overlaps(const treeBoundBox& bb) const;
-
- //- Check if points are inside surfaces to conform to
- Field<bool> inside(const pointField& samplePts) const;
-
- //- Check if point is inside surfaces to conform to
- bool inside(const point& samplePt) const;
-
- //- Check if points are outside surfaces to conform to
- Field<bool> outside(const pointField& samplePts) const;
-
- //- Check if point is outside surfaces to conform to
- bool outside(const point& samplePt) const;
-
- //- Check if point is closer to the surfaces to conform to than
- // testDistSqr, in which case return false, otherwise assess in or
- // outside and return a result depending on the testForInside flag
- Field<bool> wellInOutSide
- (
- const pointField& samplePts,
- const scalarField& testDistSqr,
- bool testForInside
- ) const;
-
- //- Check if point is inside surfaces to conform to by at least
- // testDistSqr
- Field<bool> wellInside
- (
- const pointField& samplePts,
- const scalarField& testDistSqr
- ) const;
-
- bool wellInside
- (
- const point& samplePt,
- scalar testDistSqr
- ) const;
-
- //- Check if point is outside surfaces to conform to by at least
- // testDistSqr
- Field<bool> wellOutside
- (
- const pointField& samplePts,
- const scalarField& testDistSqr
- ) const;
-
- bool wellOutside
- (
- const point& samplePt,
- scalar testDistSqr
- ) const;
-
- // Finding if the line joining start and end intersects the surface
- bool findSurfaceAnyIntersection
- (
- const point& start,
- const point& end
- ) const;
-
- //- Finding if the line joining start and end intersects the surface
- // and returning the hit and surface information
- void findSurfaceAnyIntersection
- (
- const point& start,
- const point& end,
- pointIndexHit& surfHit,
- label& hitSurface
- ) const;
-
- //- Finding the nearestIntersection of the surface to start
- void findSurfaceNearestIntersection
- (
- const point& start,
- const point& end,
- pointIndexHit& surfHit,
- label& hitSurface
- ) const;
-
- //- Find the nearest point to the sample and return it to the
- // pointIndexHit
- void findSurfaceNearest
- (
- const point& sample,
- scalar nearestDistSqr,
- pointIndexHit& surfHit,
- label& hitSurface
- ) const;
-
- void findSurfaceNearest
- (
- const pointField& samples,
- const scalarField& nearestDistSqr,
- List<pointIndexHit>& hitInfo,
- labelList& hitSurfaces
- ) const;
-
- //- Find the nearest point on any feature edge
- void findFeaturePointNearest
- (
- const point& sample,
- scalar nearestDistSqr,
- pointIndexHit& fpHit,
- label& featureHit
- ) const;
-
- //- Find the nearest point on any feature edge
- void findEdgeNearest
- (
- const point& sample,
- scalar nearestDistSqr,
- pointIndexHit& edgeHit,
- label& featureHit
- ) const;
-
- void findEdgeNearest
- (
- const pointField& samples,
- const scalarField& nearestDistsSqr,
- List<pointIndexHit>& edgeHits,
- labelList& featuresHit
- ) const;
-
- //- Find the nearest point on each type of feature edge
- void findEdgeNearestByType
- (
- const point& sample,
- scalar nearestDistSqr,
- List<pointIndexHit>& edgeHit,
- List<label>& featuresHit
- ) const;
-
- //- Find the nearest points on each feature edge that is within
- // a given distance from the sample point. Will need to check for
- // a hit or a miss because near edges may not have a nearest point
- // on them which is perpendicular to the sample point.
- void findAllNearestEdges
- (
- const point& sample,
- const scalar searchRadiusSqr,
- List<List<pointIndexHit> >& edgeHitsByFeature,
- List<label>& featuresHit
- ) const;
-
- //- Find which patch is intersected by the line from one point to
- // another
- label findPatch(const point& ptA, const point& ptB) const;
-
- //- Find which patch is closest to the point
- label findPatch(const point& pt) const;
-
- //- Is the surface a baffle
- inline bool isBaffle(const label index) const;
-
-
- // Write
-
- //- Write all components of all the extendedFeatureEdgeMeshes as
- // an obj file
- void writeFeatureObj(const fileName& prefix) const;
-
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "conformationSurfacesI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfacesI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfacesI.H
deleted file mode 100644
index a4a6595d315f0ea4fbe2dcd1f1d739f50dd6b943..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/conformationSurfaces/conformationSurfacesI.H
+++ /dev/null
@@ -1,71 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-const Foam::searchableSurfaces& Foam::conformationSurfaces::geometry() const
-{
- return allGeometry_;
-}
-
-
-const Foam::PtrList<Foam::extendedFeatureEdgeMesh>&
-Foam::conformationSurfaces::features() const
-{
- return features_;
-}
-
-
-const Foam::point& Foam::conformationSurfaces::locationInMesh() const
-{
- return locationInMesh_;
-}
-
-
-const Foam::labelList& Foam::conformationSurfaces::surfaces() const
-{
- return surfaces_;
-}
-
-
-const Foam::List<Foam::word>& Foam::conformationSurfaces::patchNames() const
-{
- return patchNames_;
-}
-
-
-const Foam::treeBoundBox& Foam::conformationSurfaces::globalBounds() const
-{
- return globalBounds_;
-}
-
-
-bool Foam::conformationSurfaces::isBaffle(const label index) const
-{
- return baffleSurfaces_[index];
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cvControls/cvControls.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cvControls/cvControls.C
deleted file mode 100644
index 04ff4833146627f83cdeec7f448144726e89beae..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cvControls/cvControls.C
+++ /dev/null
@@ -1,227 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "cvControls.H"
-#include "conformalVoronoiMesh.H"
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-Foam::cvControls::cvControls
-(
- const dictionary& cvMeshDict
-)
-:
- cvMeshDict_(cvMeshDict)
-{
- // Surface conformation controls
-
- const dictionary& surfDict(cvMeshDict_.subDict("surfaceConformation"));
-
- pointPairDistanceCoeff_ = readScalar
- (
- surfDict.lookup("pointPairDistanceCoeff")
- );
-
- mixedFeaturePointPPDistanceCoeff_ = readScalar
- (
- surfDict.lookup("mixedFeaturePointPPDistanceCoeff")
- );
-
- featurePointExclusionDistanceCoeff_ = readScalar
- (
- surfDict.lookup("featurePointExclusionDistanceCoeff")
- );
-
- featureEdgeExclusionDistanceCoeff_ = readScalar
- (
- surfDict.lookup("featureEdgeExclusionDistanceCoeff")
- );
-
- specialiseFeaturePoints_ = Switch
- (
- surfDict.lookup("specialiseFeaturePoints")
- );
-
- surfaceSearchDistanceCoeff_ = readScalar
- (
- surfDict.lookup("surfaceSearchDistanceCoeff")
- );
-
- maxSurfaceProtrusionCoeff_ = readScalar
- (
- surfDict.lookup("maxSurfaceProtrusionCoeff")
- );
-
- maxQuadAngle_ = readScalar(surfDict.lookup("maxQuadAngle"));
-
- surfaceConformationRebuildFrequency_ = max
- (
- 1,
- readLabel(surfDict.lookup("surfaceConformationRebuildFrequency"))
- );
-
- // Controls for coarse surface conformation
-
- const dictionary& conformationControlsDict
- (
- surfDict.subDict("conformationControls")
- );
-
- surfacePtExclusionDistanceCoeff_ = readScalar
- (
- conformationControlsDict.lookup("surfacePtExclusionDistanceCoeff")
- );
-
- edgeSearchDistCoeffSqr_ = sqr
- (
- readScalar
- (
- conformationControlsDict.lookup("edgeSearchDistCoeff")
- )
- );
-
- surfacePtReplaceDistCoeffSqr_ = sqr
- (
- readScalar
- (
- conformationControlsDict.lookup("surfacePtReplaceDistCoeff")
- )
- );
-
- maxConformationIterations_ = readLabel
- (
- conformationControlsDict.lookup("maxIterations")
- );
-
- iterationToInitialHitRatioLimit_ = readScalar
- (
- conformationControlsDict.lookup("iterationToInitialHitRatioLimit")
- );
-
-
- // Motion control controls
-
- const dictionary& motionDict(cvMeshDict_.subDict("motionControl"));
-
- defaultCellSize_ = readScalar(motionDict.lookup("defaultCellSize"));
-
- minimumCellSize_ = readScalar(motionDict.lookup("minimumCellSize"));
-
- objOutput_ = Switch(motionDict.lookupOrDefault<Switch>("objOutput", false));
-
- timeChecks_ = Switch
- (
- motionDict.lookupOrDefault<Switch>("timeChecks", false)
- );
-
- if (Pstream::parRun())
- {
- maxLoadUnbalance_ = readScalar(motionDict.lookup("maxLoadUnbalance"));
- }
- else
- {
- maxLoadUnbalance_ = -1;
- }
-
- alignmentSearchSpokes_ = readLabel
- (
- motionDict.lookup("alignmentSearchSpokes")
- );
-
- cosAlignmentAcceptanceAngle_ = cos
- (
- degToRad(readScalar(motionDict.lookup("alignmentAcceptanceAngle")))
- );
-
- sizeAndAlignmentRebuildFrequency_ = max
- (
- 1,
- readLabel(motionDict.lookup("sizeAndAlignmentRebuildFrequency"))
- );
-
- // Point removal criteria
-
- const dictionary& insertionDict
- (
- motionDict.subDict("pointInsertionCriteria")
- );
-
- insertionDistCoeff_ = readScalar
- (
- insertionDict.lookup("cellCentreDistCoeff")
- );
-
- faceAreaRatioCoeff_ = readScalar
- (
- insertionDict.lookup("faceAreaRatioCoeff")
- );
-
- cosInsertionAcceptanceAngle_ = cos
- (
- degToRad(readScalar(insertionDict.lookup("acceptanceAngle")))
- );
-
- // Point removal criteria
-
- const dictionary& removalDict
- (
- motionDict.subDict("pointRemovalCriteria")
- );
-
- removalDistCoeff_ = readScalar
- (
- removalDict.lookup("cellCentreDistCoeff")
- );
-
- // polyMesh filtering controls
-
- const dictionary& filteringDict(cvMeshDict_.subDict("polyMeshFiltering"));
-
- filterEdges_ = Switch
- (
- filteringDict.lookupOrDefault<Switch>("filterEdges", true)
- );
-
- filterFaces_ = Switch
- (
- filteringDict.lookupOrDefault<Switch>("filterFaces", false)
- );
-
- if (filterFaces_)
- {
- filterEdges_ = Switch::ON;
- }
-
- writeTetDualMesh_ = Switch(filteringDict.lookup("writeTetDualMesh"));
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-Foam::cvControls::~cvControls()
-{}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cvControls/cvControls.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cvControls/cvControls.H
deleted file mode 100644
index 884845e307c3c7416e3f6fd5d37a55e61e806f09..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cvControls/cvControls.H
+++ /dev/null
@@ -1,333 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::cvControls
-
-Description
- Controls for the conformalVoronoiMesh mesh generator
-
-SourceFiles
- cvControls.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef cvControls_H
-#define cvControls_H
-
-#include "dictionary.H"
-#include "Switch.H"
-#include "vector.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// Forward declaration of classes
-class conformalVoronoiMesh;
-
-/*---------------------------------------------------------------------------*\
- Class cvControls Declaration
-\*---------------------------------------------------------------------------*/
-
-class cvControls
-{
- // Private data
-
- //- Reference to the cvMeshDict
- const dictionary& cvMeshDict_;
-
- // Surface conformation controls
-
- //- Point pair spacing coefficient - fraction of the local target
- // cell size
- scalar pointPairDistanceCoeff_;
-
- //- Distance along feature edge to place mixed feature point
- // conformation groups - to be multiple of pointPairDistanceCoeff_.
- scalar mixedFeaturePointPPDistanceCoeff_;
-
- //- Distance to a feature point within which surface and edge
- // conformation points are excluded - fraction of the local target
- // cell size
- scalar featurePointExclusionDistanceCoeff_;
-
- //- Distance to an existing feature edge conformation location
- // within which other edge conformation location are excluded -
- // fraction of the local target cell size
- scalar featureEdgeExclusionDistanceCoeff_;
-
- //- Switch for using specialised feature points
- Switch specialiseFeaturePoints_;
-
- //- Surface search distance coefficient - fraction of the local
- // target cell size
- scalar surfaceSearchDistanceCoeff_;
-
- //- Maximum allowable protrusion through the surface before
- // conformation points are added - fraction of the local target
- // cell size
- scalar maxSurfaceProtrusionCoeff_;
-
- //- Maximum quadrant angle allowed at a concave edge before
- // additional "mitering" lines are added
- scalar maxQuadAngle_;
-
- //- Now often to rebuild the surface conformation
- label surfaceConformationRebuildFrequency_;
-
-
- // Controls for coarse surface conformation
-
- //- Distance to an existing surface conformation point location
- // within which other surface point locations are excluded
- // - fraction of the local target cell size
- scalar surfacePtExclusionDistanceCoeff_;
-
- //- Distance to search for feature edges near to
- // surface protrusions - fraction of the local target
- // cell size.
- scalar edgeSearchDistCoeffSqr_;
-
- //- Proximity to a feature edge where a surface hit is
- // not created, only the edge conformation is created
- // - fraction of the local target cell size.
- scalar surfacePtReplaceDistCoeffSqr_;
-
- //- Maximum allowed number surface conformation iterations.
- label maxConformationIterations_;
-
- //- Termination criterion for conformation iterations.
- // When the number of surface protrusions drops below this
- // ratio of the initial number of protrusions.
- scalar iterationToInitialHitRatioLimit_;
-
-
- // Motion control controls
-
-
- // Cell size criteria
-
- //- Default cell size
- scalar defaultCellSize_;
-
- //- Minimum cell size
- scalar minimumCellSize_;
-
-
- //- Switch to control the output of obj files for debug
- Switch objOutput_;
-
- //- Switch to control the reporting of detailed timeChecks
- Switch timeChecks_;
-
- //- Allowed relative load unbalance
- scalar maxLoadUnbalance_;
-
- //- Number of "spokes" to use to search for secondary alignment
- // direction
- label alignmentSearchSpokes_;
-
- //- cosine of angle of alignment with required direction within which a
- // face will be accepted for rotation
- scalar cosAlignmentAcceptanceAngle_;
-
- //- Now often to re-store the size and alignment data
- label sizeAndAlignmentRebuildFrequency_;
-
-
- // Point insertion criteria
-
- //- Length between Delaunay vertices above which a new Dv should be
- // inserted - fraction of the local target cell size
- scalar insertionDistCoeff_;
-
- //- Minimum dual face area corresponding to long Delaunay edge where
- // a new Dv is to be inserted - fraction of the local target cell
- // size
- scalar faceAreaRatioCoeff_;
-
- //- cosine of the angle of alignment with the required direction
- // within which a long De will be accepted for a new Dv insertion
- scalar cosInsertionAcceptanceAngle_;
-
-
- // Point removal criteria
-
- //- Length between Delaunay vertices below which a Dv should be
- // removed - fraction of the local target cell size
- scalar removalDistCoeff_;
-
-
- // polyMesh filtering controls
-
- //- Activates the mesh edge filtering. On by default.
- Switch filterEdges_;
-
- //- Activates the mesh face filtering. Off by default.
- Switch filterFaces_;
-
- //- Write tet mesh at output time (it always writes the Voronoi)
- Switch writeTetDualMesh_;
-
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- cvControls(const cvControls&);
-
- //- Disallow default bitwise assignment
- void operator=(const cvControls&);
-
-
-public:
-
- // Constructors
-
- //- Construct from references to conformalVoronoiMesh and dictionary
- cvControls
- (
- const dictionary& cvMeshDict
- );
-
-
- //- Destructor
- ~cvControls();
-
-
- // Member Functions
-
- // Access
-
- //- Return the cvMeshDict
- inline const dictionary& cvMeshDict() const;
-
- //- Return the pointPairDistanceCoeff
- inline scalar pointPairDistanceCoeff() const;
-
- //- Return the mixedFeaturePointPPDistanceCoeff
- inline scalar mixedFeaturePointPPDistanceCoeff() const;
-
- //- Return the featurePointExclusionDistanceCoeff
- inline scalar featurePointExclusionDistanceCoeff() const;
-
- //- Return the featureEdgeExclusionDistanceCoeff
- inline scalar featureEdgeExclusionDistanceCoeff() const;
-
- //- Return the surfacePtExclusionDistanceCoeff
- inline scalar surfacePtExclusionDistanceCoeff() const;
-
- //- Return whether to use specialised feature points
- inline Switch specialiseFeaturePoints() const;
-
- //- Return the surfaceSearchDistanceCoeff
- inline scalar surfaceSearchDistanceCoeff() const;
-
- //- Return the maxSurfaceProtrusionCoeff
- inline scalar maxSurfaceProtrusionCoeff() const;
-
- //- Return the maxQuadAngle
- inline scalar maxQuadAngle() const;
-
- //- Return the surfaceConformationRebuildFrequency
- inline label surfaceConformationRebuildFrequency() const;
-
- //- Return the edgeSearchDistCoeffSqr for conformation.
- scalar edgeSearchDistCoeffSqr() const;
-
- //- Return the surfacePtReplaceDistCoeffSqr for conformation.
- scalar surfacePtReplaceDistCoeffSqr() const;
-
- //- Return the maxConformationIterations
- label maxConformationIterations() const;
-
- //- Return the iterationToInitialHitRatioLimit
- scalar iterationToInitialHitRatioLimit() const;
-
- //- Return the defaultCellSize
- inline scalar defaultCellSize() const;
-
- //- Return the minimumCellSize
- inline scalar minimumCellSize() const;
-
- //- Return the objOutput Switch
- inline Switch objOutput() const;
-
- //- Return the timeChecks Switch
- inline Switch timeChecks() const;
-
- //- Return the maxLoadUnbalance
- inline scalar maxLoadUnbalance() const;
-
- //- Return the number of alignmentSearchSpokes to use
- inline label alignmentSearchSpokes() const;
-
- //- Return the cosAlignmentAcceptanceAngle
- inline scalar cosAlignmentAcceptanceAngle() const;
-
- //- Return the sizeAndAlignmentRebuildFrequency
- inline label sizeAndAlignmentRebuildFrequency() const;
-
- //- Return the aspectRatio
- inline scalar aspectRatio() const;
-
- //- Return the aspectRatioDirection
- inline const vector& aspectRatioDirection() const;
-
- //- Return the insertionDistCoeff
- inline scalar insertionDistCoeff() const;
-
- //- Return the faceAreaRatioCoeff
- inline scalar faceAreaRatioCoeff() const;
-
- //- Return the cosInsertionAcceptanceAngle
- inline scalar cosInsertionAcceptanceAngle() const;
-
- //- Return removalDistCoeff
- inline scalar removalDistCoeff() const;
-
- //- Filter edges at output time
- inline Switch filterEdges() const;
-
- //- Filter faces at output time
- inline Switch filterFaces() const;
-
- //- Write tetMesh at output time
- inline Switch writeTetDualMesh() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#include "cvControlsI.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cvControls/cvControlsI.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cvControls/cvControlsI.H
deleted file mode 100644
index 6cccc292edf9bba6147c94d02674e590ff2b67c0..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/cvControls/cvControlsI.H
+++ /dev/null
@@ -1,203 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-inline const Foam::dictionary& Foam::cvControls::cvMeshDict() const
-{
- return cvMeshDict_;
-}
-
-
-inline Foam::scalar Foam::cvControls::pointPairDistanceCoeff() const
-{
- return pointPairDistanceCoeff_;
-}
-
-
-inline Foam::scalar Foam::cvControls::mixedFeaturePointPPDistanceCoeff() const
-{
- return mixedFeaturePointPPDistanceCoeff_;
-}
-
-
-inline Foam::scalar Foam::cvControls::featurePointExclusionDistanceCoeff() const
-{
- return featurePointExclusionDistanceCoeff_;
-}
-
-
-inline Foam::scalar Foam::cvControls::featureEdgeExclusionDistanceCoeff() const
-{
- return featureEdgeExclusionDistanceCoeff_;
-}
-
-inline Foam::scalar Foam::cvControls::surfacePtExclusionDistanceCoeff() const
-{
- return surfacePtExclusionDistanceCoeff_;
-}
-
-inline Foam::Switch Foam::cvControls::specialiseFeaturePoints() const
-{
- return specialiseFeaturePoints_;
-}
-
-inline Foam::scalar Foam::cvControls::surfaceSearchDistanceCoeff() const
-{
- return surfaceSearchDistanceCoeff_;
-}
-
-
-inline Foam::scalar Foam::cvControls::maxSurfaceProtrusionCoeff() const
-{
- return maxSurfaceProtrusionCoeff_;
-}
-
-
-inline Foam::scalar Foam::cvControls::maxQuadAngle() const
-{
- return maxQuadAngle_;
-}
-
-
-inline Foam::label Foam::cvControls::surfaceConformationRebuildFrequency() const
-{
- return surfaceConformationRebuildFrequency_;
-}
-
-
-inline Foam::scalar Foam::cvControls::edgeSearchDistCoeffSqr() const
-{
- return edgeSearchDistCoeffSqr_;
-}
-
-
-inline Foam::scalar Foam::cvControls::surfacePtReplaceDistCoeffSqr() const
-{
- return surfacePtReplaceDistCoeffSqr_;
-}
-
-
-inline Foam::label Foam::cvControls::maxConformationIterations() const
-{
- return maxConformationIterations_;
-}
-
-
-inline Foam::scalar Foam::cvControls::iterationToInitialHitRatioLimit() const
-{
- return iterationToInitialHitRatioLimit_;
-}
-
-
-inline Foam::scalar Foam::cvControls::defaultCellSize() const
-{
- return defaultCellSize_;
-}
-
-
-inline Foam::scalar Foam::cvControls::minimumCellSize() const
-{
- return minimumCellSize_;
-}
-
-
-inline Foam::Switch Foam::cvControls::objOutput() const
-{
- return objOutput_;
-}
-
-
-inline Foam::Switch Foam::cvControls::timeChecks() const
-{
- return timeChecks_;
-}
-
-
-inline Foam::scalar Foam::cvControls::maxLoadUnbalance() const
-{
- return maxLoadUnbalance_;
-}
-
-
-inline Foam::label Foam::cvControls::alignmentSearchSpokes() const
-{
- return alignmentSearchSpokes_;
-}
-
-
-inline Foam::scalar Foam::cvControls::cosAlignmentAcceptanceAngle() const
-{
- return cosAlignmentAcceptanceAngle_;
-}
-
-
-inline Foam::label Foam::cvControls::sizeAndAlignmentRebuildFrequency() const
-{
- return sizeAndAlignmentRebuildFrequency_;
-}
-
-
-inline Foam::scalar Foam::cvControls::insertionDistCoeff() const
-{
- return insertionDistCoeff_;
-}
-
-
-inline Foam::scalar Foam::cvControls::faceAreaRatioCoeff() const
-{
- return faceAreaRatioCoeff_;
-}
-
-
-inline Foam::scalar Foam::cvControls::cosInsertionAcceptanceAngle() const
-{
- return cosInsertionAcceptanceAngle_;
-}
-
-
-inline Foam::scalar Foam::cvControls::removalDistCoeff() const
-{
- return removalDistCoeff_;
-}
-
-
-inline Foam::Switch Foam::cvControls::filterEdges() const
-{
- return filterEdges_;
-}
-
-inline Foam::Switch Foam::cvControls::filterFaces() const
-{
- return filterFaces_;
-}
-
-inline Foam::Switch Foam::cvControls::writeTetDualMesh() const
-{
- return writeTetDualMesh_;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/faceAreaWeightModel/faceAreaWeightModel.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/faceAreaWeightModel/faceAreaWeightModel.C
deleted file mode 100644
index 88c1e0bef4b6b80a9f5500c5a18df0d42ac79a0b..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/faceAreaWeightModel/faceAreaWeightModel.C
+++ /dev/null
@@ -1,99 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "faceAreaWeightModel.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(faceAreaWeightModel, 0);
-defineRunTimeSelectionTable(faceAreaWeightModel, dictionary);
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-faceAreaWeightModel::faceAreaWeightModel
-(
- const word& type,
- const dictionary& relaxationDict
-)
-:
- dictionary(relaxationDict),
- coeffDict_(subDict(type + "Coeffs"))
-{}
-
-
-// * * * * * * * * * * * * * * * * * Selectors * * * * * * * * * * * * * * * //
-
-autoPtr<faceAreaWeightModel> faceAreaWeightModel::New
-(
- const dictionary& relaxationDict
-)
-{
- word faceAreaWeightModelTypeName
- (
- relaxationDict.lookup("faceAreaWeightModel")
- );
-
- Info<< nl << "Selecting faceAreaWeightModel "
- << faceAreaWeightModelTypeName << endl;
-
- dictionaryConstructorTable::iterator cstrIter =
- dictionaryConstructorTablePtr_->find(faceAreaWeightModelTypeName);
-
- if (cstrIter == dictionaryConstructorTablePtr_->end())
- {
- FatalErrorIn
- (
- "faceAreaWeightModel::New(const dictionary&, "
- "const conformalVoronoiMesh&)"
- ) << "Unknown faceAreaWeightModel type "
- << faceAreaWeightModelTypeName
- << endl << endl
- << "Valid faceAreaWeightModel types are :" << endl
- << dictionaryConstructorTablePtr_->toc()
- << exit(FatalError);
- }
-
- return autoPtr<faceAreaWeightModel>(cstrIter()(relaxationDict));
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-faceAreaWeightModel::~faceAreaWeightModel()
-{}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/faceAreaWeightModel/faceAreaWeightModel.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/faceAreaWeightModel/faceAreaWeightModel.H
deleted file mode 100644
index d7afd964a6d7b0debcdd68d92172a66680681bd9..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/faceAreaWeightModel/faceAreaWeightModel.H
+++ /dev/null
@@ -1,142 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::faceAreaWeightModel
-
-Description
- Abstract base class for providing faceAreaWeight values to the cell motion
- controller based on an argument faceAreaFraction value, typically the ratio
- of the area of the face in question to the area of a square face with a side
- length of the local target cell size.
-
-SourceFiles
- faceAreaWeightModel.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef faceAreaWeightModel_H
-#define faceAreaWeightModel_H
-
-#include "point.H"
-#include "dictionary.H"
-#include "autoPtr.H"
-#include "runTimeSelectionTables.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class faceAreaWeightModel Declaration
-\*---------------------------------------------------------------------------*/
-
-class faceAreaWeightModel
-:
- public dictionary
-{
-
-protected:
-
- // Protected data
-
- //- Method coeffs dictionary
- dictionary coeffDict_;
-
-private:
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- faceAreaWeightModel(const faceAreaWeightModel&);
-
- //- Disallow default bitwise assignment
- void operator=(const faceAreaWeightModel&);
-
-
-public:
-
- //- Runtime type information
- TypeName("faceAreaWeightModel");
-
-
- // Declare run-time constructor selection table
-
- declareRunTimeSelectionTable
- (
- autoPtr,
- faceAreaWeightModel,
- dictionary,
- (
- const dictionary& faceAreaWeightDict
- ),
- (faceAreaWeightDict)
- );
-
-
- // Constructors
-
- //- Construct from components
- faceAreaWeightModel
- (
- const word& type,
- const dictionary& faceAreaWeightDict
- );
-
-
- // Selectors
-
- //- Return a reference to the selected faceAreaWeightModel
- static autoPtr<faceAreaWeightModel> New
- (
- const dictionary& faceAreaWeightDict
- );
-
-
- //- Destructor
- virtual ~faceAreaWeightModel();
-
-
- // Member Functions
-
- //- Const access to the coeffs dictionary
- const dictionary& coeffDict() const
- {
- return coeffDict_;
- }
-
- //- Return the current faceAreaWeight coefficient
- virtual scalar faceAreaWeight(scalar faceAreaFraction) const = 0;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/piecewiseLinearRamp/piecewiseLinearRamp.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/piecewiseLinearRamp/piecewiseLinearRamp.C
deleted file mode 100644
index 07496e351777324c62ce6df3f625604b27f1dd6b..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/piecewiseLinearRamp/piecewiseLinearRamp.C
+++ /dev/null
@@ -1,80 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "piecewiseLinearRamp.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(piecewiseLinearRamp, 0);
-addToRunTimeSelectionTable
-(
- faceAreaWeightModel,
- piecewiseLinearRamp,
- dictionary
-);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-piecewiseLinearRamp::piecewiseLinearRamp
-(
- const dictionary& faceAreaWeightDict
-)
-:
- faceAreaWeightModel(typeName, faceAreaWeightDict),
- lAF_(readScalar(coeffDict().lookup("lowerAreaFraction"))),
- uAF_(readScalar(coeffDict().lookup("upperAreaFraction")))
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-scalar piecewiseLinearRamp::faceAreaWeight(scalar faceAreaFraction) const
-{
- if (faceAreaFraction < lAF_)
- {
- return 0;
- }
- else if (faceAreaFraction < uAF_)
- {
- return faceAreaFraction/((uAF_ - lAF_)) - lAF_/(uAF_ - lAF_);
- }
- else
- {
- return 1;
- }
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/piecewiseLinearRamp/piecewiseLinearRamp.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/piecewiseLinearRamp/piecewiseLinearRamp.H
deleted file mode 100644
index 58fd55da039529a8e7501ef39b8ff662d0e55b6c..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/faceAreaWeightModel/piecewiseLinearRamp/piecewiseLinearRamp.H
+++ /dev/null
@@ -1,98 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::piecewiseLinearRamp
-
-Description
- A linear ramp between 0 and 1 with definable start and end points.
-
-SourceFiles
- piecewiseLinearRamp.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef piecewiseLinearRamp_H
-#define piecewiseLinearRamp_H
-
-#include "faceAreaWeightModel.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class piecewiseLinearRamp Declaration
-\*---------------------------------------------------------------------------*/
-
-class piecewiseLinearRamp
-:
- public faceAreaWeightModel
-{
-
-private:
-
- // Private data
-
- //- Face area fraction below which a weight of 0 is returned
- scalar lAF_;
-
- //- Face area fraction above which a which of 1 is returned
- scalar uAF_;
-
-public:
-
- //- Runtime type information
- TypeName("piecewiseLinearRamp");
-
- // Constructors
-
- //- Construct from components
- piecewiseLinearRamp
- (
- const dictionary& faceAreaWeightDict
- );
-
-
- //- Destructor
- virtual ~piecewiseLinearRamp()
- {}
-
-
- // Member Functions
-
- //- Return the faceAreaWeight
- virtual scalar faceAreaWeight(scalar faceAreaFraction) const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/autoDensity/autoDensity.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/autoDensity/autoDensity.C
deleted file mode 100644
index 0aace4f77fca09c19a7c72a0d1873672bdd62762..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/autoDensity/autoDensity.C
+++ /dev/null
@@ -1,947 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "autoDensity.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(autoDensity, 0);
-addToRunTimeSelectionTable
-(
- initialPointsMethod,
- autoDensity,
- dictionary
-);
-
-// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
-
-void Foam::autoDensity::writeOBJ
-(
- const treeBoundBox& bb,
- fileName name
-) const
-{
- OFstream str(cvMesh_.time().path()/name + ".obj");
-
- Pout<< "Writing " << str.name() << endl;
-
- pointField bbPoints(bb.points());
-
- forAll(bbPoints, i)
- {
- meshTools::writeOBJ(str, bbPoints[i]);
- }
-
- forAll(treeBoundBox::edges, i)
- {
- const edge& e = treeBoundBox::edges[i];
-
- str << "l " << e[0] + 1 << ' ' << e[1] + 1 << nl;
- }
-}
-
-bool Foam::autoDensity::combinedOverlaps(const treeBoundBox& box) const
-{
- if (Pstream::parRun())
- {
- return
- cvMesh_.decomposition().overlapsThisProcessor(box)
- || cvMesh_.geometryToConformTo().overlaps(box);
- }
-
- return cvMesh_.geometryToConformTo().overlaps(box);
-}
-
-
-bool Foam::autoDensity::combinedInside(const point& p) const
-{
- if (Pstream::parRun())
- {
- return
- cvMesh_.decomposition().positionOnThisProcessor(p)
- && cvMesh_.geometryToConformTo().inside(p);
- }
-
- return cvMesh_.geometryToConformTo().inside(p);
-}
-
-
-Foam::Field<bool> Foam::autoDensity::combinedWellInside
-(
- const pointField& pts,
- const scalarField& sizes
-) const
-{
- if (!Pstream::parRun())
- {
- return cvMesh_.geometryToConformTo().wellInside
- (
- pts,
- minimumSurfaceDistanceCoeffSqr_*sqr(sizes)
- );
- }
-
- Field<bool> inside(pts.size(), true);
-
- // Perform AND operation between testing the surfaces and the previous
- // field, i.e the parallel result, or in serial, with true.
-
- Field<bool> insideA
- (
- cvMesh_.geometryToConformTo().wellInside
- (
- pts,
- minimumSurfaceDistanceCoeffSqr_*sqr(sizes)
- )
- );
-
- Field<bool> insideB(cvMesh_.decomposition().positionOnThisProcessor(pts));
-
- // inside = insideA && insideB;
-
- // Pout<< insideA << nl << insideB << endl;
-
- forAll(inside, i)
- {
- // if (inside[i] != (insideA[i] && insideB[i]))
- // {
- // Pout<< i << " not equal " << " "
- // << pts[i] << " " << sizes[i] << " "
- // << insideA[i] << " "
- // << insideB[i] << " "
- // << inside[i]
- // << endl;
- // }
-
- inside[i] = (insideA[i] && insideB[i]);
- }
-
- return inside;
-}
-
-
-bool Foam::autoDensity::combinedWellInside
-(
- const point& p,
- scalar size
-) const
-{
- bool inside = true;
-
- if (Pstream::parRun())
- {
- inside = cvMesh_.decomposition().positionOnThisProcessor(p);
- }
-
- // Perform AND operation between testing the surfaces and the previous
- // result, i.e the parallel result, or in serial, with true.
- inside =
- inside
- && cvMesh_.geometryToConformTo().wellInside
- (
- p,
- minimumSurfaceDistanceCoeffSqr_*sqr(size)
- );
-
- return inside;
-}
-
-
-void Foam::autoDensity::recurseAndFill
-(
- DynamicList<Vb::Point>& initialPoints,
- const treeBoundBox& bb,
- label levelLimit,
- word recursionName
-) const
-{
- for (direction i = 0; i < 8; i++)
- {
- treeBoundBox subBB = bb.subBbox(i);
-
- word newName = recursionName + "_" + Foam::name(i);
-
- if (debug)
- {
- cvMesh_.timeCheck(newName);
- }
-
- if (combinedOverlaps(subBB))
- {
- if (levelLimit > 0)
- {
- recurseAndFill
- (
- initialPoints,
- subBB,
- levelLimit - 1,
- newName
- );
- }
- else
- {
- if (debug)
- {
- writeOBJ
- (
- subBB,
- word(newName + "_overlap")
- );
-
- Pout<< newName + "_overlap " << subBB << endl;
- }
-
- if (!fillBox(initialPoints, subBB, true))
- {
- recurseAndFill
- (
- initialPoints,
- subBB,
- levelLimit - 1,
- newName
- );
- }
- }
- }
- else if (combinedInside(subBB.midpoint()))
- {
- if (debug)
- {
- writeOBJ
- (
- subBB,
- newName + "_inside"
- );
-
- Pout<< newName + "_inside " << subBB << endl;
- }
-
- if (!fillBox(initialPoints, subBB, false))
- {
- recurseAndFill
- (
- initialPoints,
- subBB,
- levelLimit - 1,
- newName
- );
- }
- }
- else
- {
- if (debug)
- {
- writeOBJ
- (
- subBB,
- newName + "_outside"
- );
- }
- }
- }
-}
-
-
-bool Foam::autoDensity::fillBox
-(
- DynamicList<Vb::Point>& initialPoints,
- const treeBoundBox& bb,
- bool overlapping
-) const
-{
- const conformationSurfaces& geometry(cvMesh_.geometryToConformTo());
-
- Random& rnd = cvMesh_.rndGen();
-
- unsigned int initialSize = initialPoints.size();
-
- scalar maxCellSize = -GREAT;
-
- scalar minCellSize = GREAT;
-
- scalar maxDensity = 1/pow3(minCellSize);
-
- scalar volumeAdded = 0.0;
-
- const point& min = bb.min();
-
- vector span = bb.span();
-
- scalar totalVolume = bb.volume();
-
- label trialPoints = 0;
-
- bool wellInside = false;
-
- if (!overlapping)
- {
- // Check the nearest point on the surface to the box, if it is far
- // enough away, then the surface sampling of the box can be skipped.
- // Checking if the nearest piece of surface is at least 1.5*bb.span away
- // from the bb.midpoint.
-
- pointIndexHit surfHit;
- label hitSurface;
-
- geometry.findSurfaceNearest
- (
- bb.midpoint(),
- 2.25*magSqr(span),
- surfHit,
- hitSurface
- );
-
- if (!surfHit.hit())
- {
- if (debug)
- {
- Pout<< "box wellInside, no need to sample surface." << endl;
- }
-
- wellInside = true;
- }
- }
-
- if (!overlapping && !wellInside)
- {
- // If this is an inside box then then it is possible to fill points very
- // close to the boundary, to prevent this, check the corners and sides
- // of the box so ensure that they are "wellInside". If not, set as an
- // overlapping box.
-
- pointField corners(bb.points());
-
- scalarField cornerSizes = cvMesh_.cellShapeControls().cellSize(corners);
-
- Field<bool> insideCorners = combinedWellInside(corners, cornerSizes);
-
- // Pout<< corners << nl << cornerSizes << nl << insideCorners << endl;
-
- forAll(insideCorners, i)
- {
- // Use the sizes to improve the min/max cell size estimate
- scalar s = cornerSizes[i];
-
- if (s > maxCellSize)
- {
- maxCellSize = s;
- }
-
- if (s < minCellSize)
- {
- minCellSize = max(s, minCellSizeLimit_);
- }
-
- if (maxCellSize/minCellSize > maxSizeRatio_)
- {
- if (debug)
- {
- Pout<< "Abort fill at corner sample stage,"
- << " minCellSize " << minCellSize
- << " maxCellSize " << maxCellSize
- << " maxSizeRatio " << maxCellSize/minCellSize
- << endl;
- }
-
- return false;
- }
-
- if (!insideCorners[i])
- {
- // If one or more corners is not "wellInside", then treat this
- // as an overlapping box.
-
- if (debug)
- {
- Pout<< "Inside box found to have some non-wellInside "
- << "corners, using overlapping fill."
- << endl;
- }
-
- overlapping = true;
-
- break;
- }
- }
-
- if (!overlapping)
- {
- vector delta = span/(surfRes_ - 1);
-
- label nLine = 6*(surfRes_ - 2);
-
- pointField linePoints(nLine, vector::zero);
-
- scalarField lineSizes(nLine, 0.0);
-
- for (label i = 0; i < surfRes_; i++)
- {
- label lPI = 0;
-
- for (label j = 1; j < surfRes_ - 1 ; j++)
- {
- linePoints[lPI++] =
- min
- + vector(0, delta.y()*i, delta.z()*j);
-
- linePoints[lPI++] =
- min
- + vector
- (
- delta.x()*(surfRes_ - 1),
- delta.y()*i,
- delta.z()*j
- );
-
- linePoints[lPI++] =
- min
- + vector(delta.x()*j, 0, delta.z()*i);
-
- linePoints[lPI++] =
- min
- + vector
- (
- delta.x()*j,
- delta.y()*(surfRes_ - 1),
- delta.z()*i
- );
-
- linePoints[lPI++] =
- min
- + vector(delta.x()*i, delta.y()*j, 0);
-
- linePoints[lPI++] =
- min
- + vector
- (
- delta.x()*i,
- delta.y()*j,
- delta.z()*(surfRes_ - 1)
- );
- }
-
- lineSizes = cvMesh_.cellShapeControls().cellSize(linePoints);
-
- Field<bool> insideLines = combinedWellInside
- (
- linePoints,
- lineSizes
- );
-
- forAll(insideLines, i)
- {
- // Use the sizes to improve the min/max cell size estimate
- scalar s = lineSizes[i];
-
- if (s > maxCellSize)
- {
- maxCellSize = s;
- }
-
- if (s < minCellSize)
- {
- minCellSize = max(s, minCellSizeLimit_);
- }
-
- if (maxCellSize/minCellSize > maxSizeRatio_)
- {
- if (debug)
- {
- Pout<< "Abort fill at surface sample stage, "
- << " minCellSize " << minCellSize
- << " maxCellSize " << maxCellSize
- << " maxSizeRatio " << maxCellSize/minCellSize
- << endl;
- }
-
- return false;
- }
-
- if (!insideLines[i])
- {
- // If one or more surface points is not "wellInside",
- // then treat this as an overlapping box.
- overlapping = true;
-
- if (debug)
- {
- Pout<< "Inside box found to have some non-"
- << "wellInside surface points, using "
- << "overlapping fill."
- << endl;
- }
-
- break;
- }
- }
- }
- }
- }
-
- if (overlapping)
- {
- // Sample the box to find an estimate of the min size, and a volume
- // estimate when overlapping == true.
-
- pointField samplePoints
- (
- volRes_*volRes_*volRes_,
- vector::zero
- );
-
- vector delta = span/volRes_;
-
- label pI = 0;
-
- for (label i = 0; i < volRes_; i++)
- {
- for (label j = 0; j < volRes_; j++)
- {
- for (label k = 0; k < volRes_; k++)
- {
- // Perturb the points to avoid creating degenerate positions
- // in the Delaunay tessellation.
-
- samplePoints[pI++] =
- min
- + vector
- (
- delta.x()*(i + 0.5 + 0.1*(rnd.scalar01() - 0.5)),
- delta.y()*(j + 0.5 + 0.1*(rnd.scalar01() - 0.5)),
- delta.z()*(k + 0.5 + 0.1*(rnd.scalar01() - 0.5))
- );
- }
- }
- }
-
- // Randomise the order of the points to (potentially) improve the speed
- // of assessing the density ratio, and prevent a box being filled from a
- // corner when only some these points are required.
- shuffle(samplePoints);
-
- scalarField sampleSizes = cvMesh_.cellShapeControls().cellSize
- (
- samplePoints
- );
-
- Field<bool> insidePoints = combinedWellInside
- (
- samplePoints,
- sampleSizes
- );
-
- label nInside = 0;
-
- forAll(insidePoints, i)
- {
- if (insidePoints[i])
- {
- nInside++;
-
- scalar s = sampleSizes[i];
-
- if (s > maxCellSize)
- {
- maxCellSize = s;
- }
-
- if (s < minCellSize)
- {
- minCellSize = max(s, minCellSizeLimit_);
- }
-
- if (maxCellSize/minCellSize > maxSizeRatio_)
- {
- if (debug)
- {
- Pout<< "Abort fill at sample stage,"
- << " minCellSize " << minCellSize
- << " maxCellSize " << maxCellSize
- << " maxSizeRatio " << maxCellSize/minCellSize
- << endl;
- }
-
- return false;
- }
- }
- }
-
- if (nInside == 0)
- {
- if (debug)
- {
- Pout<< "No sample points found inside box" << endl;
- }
-
- return true;
- }
-
- if (debug)
- {
- Pout<< scalar(nInside)/scalar(samplePoints.size())
- << " full overlapping box" << endl;
- }
-
- totalVolume *= scalar(nInside)/scalar(samplePoints.size());
-
- if (debug)
- {
- Pout<< "Total volume to fill = " << totalVolume << endl;
- }
-
- // Using the sampledPoints as the first test locations as they are
- // randomly shuffled, but unfiormly sampling space and have wellInside
- // and size data already
-
- maxDensity = 1/pow3(max(minCellSize, SMALL));
-
- forAll(insidePoints, i)
- {
- if (insidePoints[i])
- {
- trialPoints++;
-
- point p = samplePoints[i];
-
- scalar localSize = sampleSizes[i];
-
- scalar localDensity = 1/pow3(localSize);
-
- // No need to look at max/min cell size here, already handled
- // by sampling
-
- // Accept possible placements proportional to the relative
- // local density
-
- // TODO - is there a lot of cost in the 1/density calc? Could
- // assess on
- // (1/maxDensity)/(1/localDensity) = minVolume/localVolume
- if (localDensity/maxDensity > rnd.scalar01())
- {
- scalar localVolume = 1/localDensity;
-
- if (volumeAdded + localVolume > totalVolume)
- {
- // Add the final box with a probability of to the ratio
- // of the remaining volume to the volume to be added,
- // i.e. insert a box of volume 0.5 into a remaining
- // volume of 0.1 20% of the time.
- scalar addProbability =
- (totalVolume - volumeAdded)/localVolume;
-
- scalar r = rnd.scalar01();
-
- if (debug)
- {
- Pout<< "totalVolume " << totalVolume << nl
- << "volumeAdded " << volumeAdded << nl
- << "localVolume " << localVolume << nl
- << "addProbability " << addProbability << nl
- << "random " << r
- << endl;
- }
-
- if (addProbability > r)
- {
- // Place this volume before finishing filling this
- // box
-
- // Pout<< "Final volume probability break accept"
- // << endl;
-
- initialPoints.append
- (
- Vb::Point(p.x(), p.y(), p.z())
- );
-
- volumeAdded += localVolume;
- }
-
- break;
- }
-
- initialPoints.append(Vb::Point(p.x(), p.y(), p.z()));
-
- volumeAdded += localVolume;
- }
- }
- }
- }
-
- if (volumeAdded < totalVolume)
- {
- if (debug)
- {
- Pout<< "Adding random points, remaining volume "
- << totalVolume - volumeAdded
- << endl;
- }
-
- maxDensity = 1/pow3(max(minCellSize, SMALL));
-
- while (true)
- {
- trialPoints++;
-
- point p = min + cmptMultiply(span, rnd.vector01());
-
- scalar localSize = cvMesh_.cellShapeControls().cellSize(p);
-
- bool insidePoint = false;
-
- if (!overlapping)
- {
- insidePoint = true;
- }
- else
- {
- // Determine if the point is "wellInside" the domain
- insidePoint = combinedWellInside(p, localSize);
- }
-
- if (insidePoint)
- {
- if (localSize > maxCellSize)
- {
- maxCellSize = localSize;
- }
-
- if (localSize < minCellSize)
- {
- minCellSize = max(localSize, minCellSizeLimit_);
-
- localSize = minCellSize;
-
- // 1/(minimum cell size)^3, gives the maximum permissible
- // point density
- maxDensity = 1/pow3(max(minCellSize, SMALL));
- }
-
- if (maxCellSize/minCellSize > maxSizeRatio_)
- {
- if (debug)
- {
- Pout<< "Abort fill at random fill stage,"
- << " minCellSize " << minCellSize
- << " maxCellSize " << maxCellSize
- << " maxSizeRatio " << maxCellSize/minCellSize
- << endl;
- }
-
- // Discard any points already filled into this box by
- // setting size of initialPoints back to its starting value
- initialPoints.resize(initialSize);
-
- return false;
- }
-
- scalar localDensity = 1/pow3(max(localSize, SMALL));
-
- // Accept possible placements proportional to the relative local
- // density
- if (localDensity/maxDensity > rnd.scalar01())
- {
- scalar localVolume = 1/localDensity;
-
- if (volumeAdded + localVolume > totalVolume)
- {
- // Add the final box with a probability of to the ratio
- // of the remaining volume to the volume to be added,
- // i.e. insert a box of volume 0.5 into a remaining
- // volume of 0.1 20% of the time.
- scalar addProbability =
- (totalVolume - volumeAdded)/localVolume;
-
- scalar r = rnd.scalar01();
-
- if (debug)
- {
- Pout<< "totalVolume " << totalVolume << nl
- << "volumeAdded " << volumeAdded << nl
- << "localVolume " << localVolume << nl
- << "addProbability " << addProbability << nl
- << "random " << r
- << endl;
- }
-
- if (addProbability > r)
- {
- // Place this volume before finishing filling this
- // box
-
- // Pout<< "Final volume probability break accept"
- // << endl;
-
- initialPoints.append
- (
- Vb::Point(p.x(), p.y(), p.z())
- );
-
- volumeAdded += localVolume;
- }
-
- break;
- }
-
- initialPoints.append(Vb::Point(p.x(), p.y(), p.z()));
-
- volumeAdded += localVolume;
- }
- }
- }
- }
-
- globalTrialPoints_ += trialPoints;
-
- if (debug)
- {
- Pout<< trialPoints
- << " locations queried, " << initialPoints.size() - initialSize
- << " points placed, ("
- << scalar(initialPoints.size() - initialSize)
- /scalar(max(trialPoints, 1))
- << " success rate)." << nl
- << "minCellSize " << minCellSize
- << ", maxCellSize " << maxCellSize
- << ", ratio " << maxCellSize/minCellSize
- << nl << endl;
- }
-
- return true;
-}
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-autoDensity::autoDensity
-(
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
-)
-:
- initialPointsMethod(typeName, initialPointsDict, cvMesh),
- globalTrialPoints_(0),
- minCellSizeLimit_
- (
- detailsDict().lookupOrDefault<scalar>("minCellSizeLimit", 0.0)
- ),
- minLevels_(readLabel(detailsDict().lookup("minLevels"))),
- maxSizeRatio_(readScalar(detailsDict().lookup("maxSizeRatio"))),
- volRes_(readLabel(detailsDict().lookup("sampleResolution"))),
- surfRes_
- (
- detailsDict().lookupOrDefault<label>("surfaceSampleResolution", volRes_)
- )
-{
- if (maxSizeRatio_ <= 1.0)
- {
- maxSizeRatio_ = 2.0;
-
- WarningIn
- (
- "autoDensity::autoDensity"
- "("
- "const dictionary& initialPointsDict,"
- "const conformalVoronoiMesh& cvMesh"
- ")"
- )
- << "The maxSizeRatio must be greater than one to be sensible, "
- << "setting to " << maxSizeRatio_
- << endl;
- }
-}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-List<Vb::Point> autoDensity::initialPoints() const
-{
- treeBoundBox hierBB;
-
- // Pick up the bounds of this processor, or the whole geometry, depending
- // on whether this is a parallel run.
- if (Pstream::parRun())
- {
- hierBB = cvMesh_.decomposition().procBounds();
- }
- else
- {
- // Extend the global box to move it off large plane surfaces
- hierBB = cvMesh_.geometryToConformTo().globalBounds().extend
- (
- cvMesh_.rndGen(),
- 1e-6
- );
- }
-
- DynamicList<Vb::Point> initialPoints;
-
- Info<< nl << " " << typeName << endl;
-
- if (debug)
- {
- Pout<< " Filling box " << hierBB << endl;
- }
-
- recurseAndFill
- (
- initialPoints,
- hierBB,
- minLevels_ - 1,
- "recursionBox"
- );
-
- initialPoints.shrink();
-
- label nInitialPoints = initialPoints.size();
-
- if (Pstream::parRun())
- {
- reduce(nInitialPoints, sumOp<label>());
- reduce(globalTrialPoints_, sumOp<label>());
- }
-
- Info<< " " << nInitialPoints << " points placed" << nl
- << " " << globalTrialPoints_ << " locations queried" << nl
- << " "
- << scalar(nInitialPoints)/scalar(max(globalTrialPoints_, 1))
- << " success rate"
- << endl;
-
- return initialPoints;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/autoDensity/autoDensity.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/autoDensity/autoDensity.H
deleted file mode 100644
index 2ef7cb00b0e3fa6b737526dff9918acd94bdeac7..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/autoDensity/autoDensity.H
+++ /dev/null
@@ -1,171 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::autoDensity
-
-Description
- Choose random points inside the domain and place them with a probability
- proportional to the target density of points.
-
-SourceFiles
- autoDensity.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef autoDensity_H
-#define autoDensity_H
-
-#include "initialPointsMethod.H"
-#include "treeBoundBox.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class autoDensity Declaration
-\*---------------------------------------------------------------------------*/
-
-class autoDensity
-:
- public initialPointsMethod
-{
-
-private:
-
- // Private data
-
- //- Trial points attempted to be placed in all boxes
- mutable label globalTrialPoints_;
-
- //- Smallest minimum cell size allowed, i.e. to avoid high initial
- // population of areas of small size
- scalar minCellSizeLimit_;
-
- //- Minimum normal level of recursion, can be more if a high density
- // ratio is detected
- label minLevels_;
-
- //- Maximum allowed ratio of cell size in a box
- scalar maxSizeRatio_;
-
- //- How fine should the initial sample of the volume a box be to
- // investigate its cell sizes and volume fraction
- label volRes_;
-
- //- How fine should the initial sample of the surface of a box be to
- // investigate if it is near to a the geometry.
- label surfRes_;
-
-
- // Private Member Functions
-
- //- Check if the given box overlaps the geometry or, in parallel, the
- // backgroundMeshDecomposition
- bool combinedOverlaps(const treeBoundBox& box) const;
-
- //- Check if the given point is inside the geometry and, in parallel,
- // the backgroundMeshDecomposition
- bool combinedInside(const point& p) const;
-
- //- Check if the given points are wellInside the geometry and, in
- // parallel, inside the backgroundMeshDecomposition
- Field<bool> combinedWellInside
- (
- const pointField& pts,
- const scalarField& sizes
- ) const;
-
- //- Check if the given points are wellInside the geometry and, in
- // parallel, inside the backgroundMeshDecomposition
- bool combinedWellInside
- (
- const point& p,
- scalar size
- ) const;
-
- //- Write boundBox as obj
- void writeOBJ
- (
- const treeBoundBox& bb,
- fileName name
- ) const;
-
- //- Descend into octants of the supplied bound box
- void recurseAndFill
- (
- DynamicList<Vb::Point>& initialPoints,
- const treeBoundBox& bb,
- label levelLimit,
- word recursionName
- ) const;
-
- //- Fill the given box, optionally filling surface overlapping boxes.
- // Returns true if the fill is successful, false if it is to be aborted
- // in favour of further recursion.
- bool fillBox
- (
- DynamicList<Vb::Point>& initialPoints,
- const treeBoundBox& bb,
- bool overlapping
- ) const;
-
-
-public:
-
- //- Runtime type information
- TypeName("autoDensity");
-
- // Constructors
-
- //- Construct from components
- autoDensity
- (
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
- );
-
-
- //- Destructor
- virtual ~autoDensity()
- {}
-
-
- // Member Functions
-
- //- Return the initial points for the conformalVoronoiMesh
- virtual List<Vb::Point> initialPoints() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/bodyCentredCubic/bodyCentredCubic.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/bodyCentredCubic/bodyCentredCubic.C
deleted file mode 100644
index c69e7ac8fb314d334c595d103e9dd70ffe7fd9fc..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/bodyCentredCubic/bodyCentredCubic.C
+++ /dev/null
@@ -1,194 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "bodyCentredCubic.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(bodyCentredCubic, 0);
-addToRunTimeSelectionTable(initialPointsMethod, bodyCentredCubic, dictionary);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-bodyCentredCubic::bodyCentredCubic
-(
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
-)
-:
- initialPointsMethod(typeName, initialPointsDict, cvMesh),
- initialCellSize_(readScalar(detailsDict().lookup("initialCellSize"))),
- randomiseInitialGrid_(detailsDict().lookup("randomiseInitialGrid")),
- randomPerturbationCoeff_
- (
- readScalar(detailsDict().lookup("randomPerturbationCoeff"))
- )
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-List<Vb::Point> bodyCentredCubic::initialPoints() const
-{
- boundBox bb;
-
- // Pick up the bounds of this processor, or the whole geometry, depending
- // on whether this is a parallel run.
- if (Pstream::parRun())
- {
- bb = cvMesh_.decomposition().procBounds();
- }
- else
- {
- bb = cvMesh_.geometryToConformTo().globalBounds();
- }
-
- scalar x0 = bb.min().x();
- scalar xR = bb.max().x() - x0;
- label ni = label(xR/initialCellSize_);
-
- scalar y0 = bb.min().y();
- scalar yR = bb.max().y() - y0;
- label nj = label(yR/initialCellSize_);
-
- scalar z0 = bb.min().z();
- scalar zR = bb.max().z() - z0;
- label nk = label(zR/initialCellSize_);
-
- vector delta(xR/ni, yR/nj, zR/nk);
-
- delta *= pow((1.0/2.0),-(1.0/3.0));
-
- Random& rndGen = cvMesh_.rndGen();
-
- scalar pert = randomPerturbationCoeff_*cmptMin(delta);
-
- DynamicList<Vb::Point> initialPoints(ni*nj*nk/10);
-
- for (label i = 0; i < ni; i++)
- {
- for (label j = 0; j < nj; j++)
- {
- // Generating, testing and adding points one line at a time to
- // reduce the memory requirement for cases with bounding boxes that
- // are very large in comparison to the volume to be filled
-
- label pI = 0;
-
- pointField points(2*nk);
-
- for (label k = 0; k < nk; k++)
- {
- point pA
- (
- x0 + i*delta.x(),
- y0 + j*delta.y(),
- z0 + k*delta.z()
- );
-
- point pB = pA + 0.5*delta;
-
- if (randomiseInitialGrid_)
- {
- pA.x() += pert*(rndGen.scalar01() - 0.5);
- pA.y() += pert*(rndGen.scalar01() - 0.5);
- pA.z() += pert*(rndGen.scalar01() - 0.5);
- }
-
- if (Pstream::parRun())
- {
- if (cvMesh_.decomposition().positionOnThisProcessor(pA))
- {
- // Add this point in parallel only if this position is
- // on this processor.
- points[pI++] = pA;
- }
- }
- else
- {
- points[pI++] = pA;
- }
-
- if (randomiseInitialGrid_)
- {
- pB.x() += pert*(rndGen.scalar01() - 0.5);
- pB.y() += pert*(rndGen.scalar01() - 0.5);
- pB.z() += pert*(rndGen.scalar01() - 0.5);
- }
-
- if (Pstream::parRun())
- {
- if (cvMesh_.decomposition().positionOnThisProcessor(pB))
- {
- // Add this point in parallel only if this position is
- // on this processor.
- points[pI++] = pB;
- }
- }
- else
- {
- points[pI++] = pB;
- }
- }
-
- points.setSize(pI);
-
- Field<bool> insidePoints = cvMesh_.geometryToConformTo().wellInside
- (
- points,
- minimumSurfaceDistanceCoeffSqr_
- *sqr
- (
- cvMesh_.cellShapeControls().cellSize(points)
- )
- );
-
- forAll(insidePoints, i)
- {
- if (insidePoints[i])
- {
- const point& p(points[i]);
-
- initialPoints.append(Vb::Point(p.x(), p.y(), p.z()));
- }
- }
- }
- }
-
- return initialPoints.shrink();
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/bodyCentredCubic/bodyCentredCubic.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/bodyCentredCubic/bodyCentredCubic.H
deleted file mode 100644
index f75fa599d39e64a6a76f725e8378036f2bf17608..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/bodyCentredCubic/bodyCentredCubic.H
+++ /dev/null
@@ -1,104 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::bodyCentredCubic
-
-Description
- Generate a BCC lattice of points inside the surfaces to be
- conformed to of the conformalVoronoiMesh
-
-SourceFiles
- bodyCentredCubic.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef bodyCentredCubic_H
-#define bodyCentredCubic_H
-
-#include "initialPointsMethod.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class bodyCentredCubic Declaration
-\*---------------------------------------------------------------------------*/
-
-class bodyCentredCubic
-:
- public initialPointsMethod
-{
-
-private:
-
- // Private data
-
- //- The initial cell spacing
- scalar initialCellSize_;
-
- //- Should the initial positions be randomised
- Switch randomiseInitialGrid_;
-
- //- Randomise the initial positions by fraction of the initialCellSize_
- scalar randomPerturbationCoeff_;
-
-
-public:
-
- //- Runtime type information
- TypeName("bodyCentredCubic");
-
- // Constructors
-
- //- Construct from components
- bodyCentredCubic
- (
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
- );
-
-
- //- Destructor
- virtual ~bodyCentredCubic()
- {}
-
-
- // Member Functions
-
- //- Return the initial points for the conformalVoronoiMesh
- virtual List<Vb::Point> initialPoints() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/faceCentredCubic/faceCentredCubic.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/faceCentredCubic/faceCentredCubic.C
deleted file mode 100644
index af2e7dfbf4d833d0e76585bc8c322bad152aa3a9..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/faceCentredCubic/faceCentredCubic.C
+++ /dev/null
@@ -1,255 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "faceCentredCubic.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(faceCentredCubic, 0);
-addToRunTimeSelectionTable(initialPointsMethod, faceCentredCubic, dictionary);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-faceCentredCubic::faceCentredCubic
-(
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
-)
-:
- initialPointsMethod(typeName, initialPointsDict, cvMesh),
- initialCellSize_(readScalar(detailsDict().lookup("initialCellSize"))),
- randomiseInitialGrid_(detailsDict().lookup("randomiseInitialGrid")),
- randomPerturbationCoeff_
- (
- readScalar(detailsDict().lookup("randomPerturbationCoeff"))
- )
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-List<Vb::Point> faceCentredCubic::initialPoints() const
-{
- boundBox bb;
-
- // Pick up the bounds of this processor, or the whole geometry, depending
- // on whether this is a parallel run.
- if (Pstream::parRun())
- {
- bb = cvMesh_.decomposition().procBounds();
- }
- else
- {
- bb = cvMesh_.geometryToConformTo().globalBounds();
- }
-
- scalar x0 = bb.min().x();
- scalar xR = bb.max().x() - x0;
- label ni = label(xR/initialCellSize_);
-
- scalar y0 = bb.min().y();
- scalar yR = bb.max().y() - y0;
- label nj = label(yR/initialCellSize_);
-
- scalar z0 = bb.min().z();
- scalar zR = bb.max().z() - z0;
- label nk = label(zR/initialCellSize_);
-
- vector delta(xR/ni, yR/nj, zR/nk);
-
- delta *= pow((1.0/4.0),-(1.0/3.0));
-
- Random& rndGen = cvMesh_.rndGen();
-
- scalar pert = randomPerturbationCoeff_*cmptMin(delta);
-
- DynamicList<Vb::Point> initialPoints(ni*nj*nk/10);
-
- for (label i = 0; i < ni; i++)
- {
- for (label j = 0; j < nj; j++)
- {
- // Generating, testing and adding points one line at a time to
- // reduce the memory requirement for cases with bounding boxes that
- // are very large in comparison to the volume to be filled
-
- label pI = 0;
-
- pointField points(4*nk);
-
- for (label k = 0; k < nk; k++)
- {
- point p
- (
- x0 + i*delta.x(),
- y0 + j*delta.y(),
- z0 + k*delta.z()
- );
-
- if (randomiseInitialGrid_)
- {
- p.x() += pert*(rndGen.scalar01() - 0.5);
- p.y() += pert*(rndGen.scalar01() - 0.5);
- p.z() += pert*(rndGen.scalar01() - 0.5);
- }
-
- if (Pstream::parRun())
- {
- if (cvMesh_.decomposition().positionOnThisProcessor(p))
- {
- // Add this point in parallel only if this position is
- // on this processor.
- points[pI++] = p;
- }
- }
- else
- {
- points[pI++] = p;
- }
-
- p = point
- (
- x0 + i*delta.x(),
- y0 + (j + 0.5)*delta.y(),
- z0 + (k + 0.5)*delta.z()
- );
-
- if (randomiseInitialGrid_)
- {
- p.x() += pert*(rndGen.scalar01() - 0.5);
- p.y() += pert*(rndGen.scalar01() - 0.5);
- p.z() += pert*(rndGen.scalar01() - 0.5);
- }
-
- if (Pstream::parRun())
- {
- if (cvMesh_.decomposition().positionOnThisProcessor(p))
- {
- // Add this point in parallel only if this position is
- // on this processor.
- points[pI++] = p;
- }
- }
- else
- {
- points[pI++] = p;
- }
-
- p = point
- (
- x0 + (i + 0.5)*delta.x(),
- y0 + j*delta.y(),
- z0 + (k + 0.5)*delta.z()
- );
-
- if (randomiseInitialGrid_)
- {
- p.x() += pert*(rndGen.scalar01() - 0.5);
- p.y() += pert*(rndGen.scalar01() - 0.5);
- p.z() += pert*(rndGen.scalar01() - 0.5);
- }
-
- if (Pstream::parRun())
- {
- if (cvMesh_.decomposition().positionOnThisProcessor(p))
- {
- // Add this point in parallel only if this position is
- // on this processor.
- points[pI++] = p;
- }
- }
- else
- {
- points[pI++] = p;
- }
-
- p = point
- (
- x0 + (i + 0.5)*delta.x(),
- y0 + (j + 0.5)*delta.y(),
- z0 + k*delta.z()
- );
-
- if (randomiseInitialGrid_)
- {
- p.x() += pert*(rndGen.scalar01() - 0.5);
- p.y() += pert*(rndGen.scalar01() - 0.5);
- p.z() += pert*(rndGen.scalar01() - 0.5);
- }
-
- if (Pstream::parRun())
- {
- if (cvMesh_.decomposition().positionOnThisProcessor(p))
- {
- // Add this point in parallel only if this position is
- // on this processor.
- points[pI++] = p;
- }
- }
- else
- {
- points[pI++] = p;
- }
- }
-
- points.setSize(pI);
-
- Field<bool> insidePoints = cvMesh_.geometryToConformTo().wellInside
- (
- points,
- minimumSurfaceDistanceCoeffSqr_
- *sqr
- (
- cvMesh_.cellShapeControls().cellSize(points)
- )
- );
-
- forAll(insidePoints, i)
- {
- if (insidePoints[i])
- {
- const point& p(points[i]);
-
- initialPoints.append(Vb::Point(p.x(), p.y(), p.z()));
- }
- }
- }
- }
-
- return initialPoints.shrink();
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/faceCentredCubic/faceCentredCubic.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/faceCentredCubic/faceCentredCubic.H
deleted file mode 100644
index 3444b386c37fd6540a2083c93d25b7af26a3432f..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/faceCentredCubic/faceCentredCubic.H
+++ /dev/null
@@ -1,104 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::faceCentredCubic
-
-Description
- Generate an FCC lattice of points inside the surfaces to be
- conformed to of the conformalVoronoiMesh
-
-SourceFiles
- faceCentredCubic.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef faceCentredCubic_H
-#define faceCentredCubic_H
-
-#include "initialPointsMethod.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class faceCentredCubic Declaration
-\*---------------------------------------------------------------------------*/
-
-class faceCentredCubic
-:
- public initialPointsMethod
-{
-
-private:
-
- // Private data
-
- //- The initial cell spacing
- scalar initialCellSize_;
-
- //- Should the initial positions be randomised
- Switch randomiseInitialGrid_;
-
- //- Randomise the initial positions by fraction of the initialCellSize_
- scalar randomPerturbationCoeff_;
-
-
-public:
-
- //- Runtime type information
- TypeName("faceCentredCubic");
-
- // Constructors
-
- //- Construct from components
- faceCentredCubic
- (
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
- );
-
-
- //- Destructor
- virtual ~faceCentredCubic()
- {}
-
-
- // Member Functions
-
- //- Return the initial points for the conformalVoronoiMesh
- virtual List<Vb::Point> initialPoints() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/initialPointsMethod/initialPointsMethod.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/initialPointsMethod/initialPointsMethod.C
deleted file mode 100644
index bd0e6d732f535e76d8596ab4fd100cbac673a742..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/initialPointsMethod/initialPointsMethod.C
+++ /dev/null
@@ -1,112 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "initialPointsMethod.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(initialPointsMethod, 0);
-defineRunTimeSelectionTable(initialPointsMethod, dictionary);
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-initialPointsMethod::initialPointsMethod
-(
- const word& type,
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
-)
-:
- dictionary(initialPointsDict),
- cvMesh_(cvMesh),
- detailsDict_(subDict(type + "Coeffs")),
- minimumSurfaceDistanceCoeffSqr_
- (
- sqr
- (
- readScalar
- (
- initialPointsDict.lookup("minimumSurfaceDistanceCoeff")
- )
- )
- )
-{}
-
-
-// * * * * * * * * * * * * * * * * * Selectors * * * * * * * * * * * * * * * //
-
-autoPtr<initialPointsMethod> initialPointsMethod::New
-(
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
-)
-{
- word initialPointsMethodTypeName
- (
- initialPointsDict.lookup("initialPointsMethod")
- );
-
- Info<< nl << "Selecting initialPointsMethod "
- << initialPointsMethodTypeName << endl;
-
- dictionaryConstructorTable::iterator cstrIter =
- dictionaryConstructorTablePtr_->find(initialPointsMethodTypeName);
-
- if (cstrIter == dictionaryConstructorTablePtr_->end())
- {
- FatalErrorIn
- (
- "initialPointsMethod::New(dictionary&, "
- "const conformalVoronoiMesh&)"
- ) << "Unknown initialPointsMethod type "
- << initialPointsMethodTypeName
- << endl << endl
- << "Valid initialPointsMethod types are :" << endl
- << dictionaryConstructorTablePtr_->toc()
- << exit(FatalError);
- }
-
- return autoPtr<initialPointsMethod>(cstrIter()(initialPointsDict, cvMesh));
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-initialPointsMethod::~initialPointsMethod()
-{}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/initialPointsMethod/initialPointsMethod.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/initialPointsMethod/initialPointsMethod.H
deleted file mode 100644
index 8c8df91c92ebef5fadb10560459974d30de07ddf..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/initialPointsMethod/initialPointsMethod.H
+++ /dev/null
@@ -1,154 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::initialPointsMethod
-
-Description
- Abstract base class for generating initial points for a conformalVoronoiMesh
-
-SourceFiles
- initialPointsMethod.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef initialPointsMethod_H
-#define initialPointsMethod_H
-
-#include "point.H"
-#include "conformalVoronoiMesh.H"
-#include "backgroundMeshDecomposition.H"
-#include "dictionary.H"
-#include "Random.H"
-#include "Switch.H"
-#include "autoPtr.H"
-#include "runTimeSelectionTables.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class initialPointsMethod Declaration
-\*---------------------------------------------------------------------------*/
-
-class initialPointsMethod
-:
- public dictionary
-{
-
-protected:
-
- // Protected data
-
- //- Reference to the conformalVoronoiMesh holding this object
- const conformalVoronoiMesh& cvMesh_;
-
- //- Method details dictionary
- dictionary detailsDict_;
-
- //- Only allow the placement of initial points that are within the
- // surfaces to be meshed by minimumSurfaceDistanceCoeff multiplied by
- // the local target cell size. Store square of value.
- scalar minimumSurfaceDistanceCoeffSqr_;
-
-private:
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- initialPointsMethod(const initialPointsMethod&);
-
- //- Disallow default bitwise assignment
- void operator=(const initialPointsMethod&);
-
-
-public:
-
- //- Runtime type information
- TypeName("initialPointsMethod");
-
-
- // Declare run-time constructor selection table
-
- declareRunTimeSelectionTable
- (
- autoPtr,
- initialPointsMethod,
- dictionary,
- (
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
- ),
- (initialPointsDict, cvMesh)
- );
-
-
- // Constructors
-
- //- Construct from components
- initialPointsMethod
- (
- const word& type,
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
- );
-
-
- // Selectors
-
- //- Return a reference to the selected initialPointsMethod
- static autoPtr<initialPointsMethod> New
- (
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
- );
-
-
- //- Destructor
- virtual ~initialPointsMethod();
-
-
- // Member Functions
-
- //- Const access to the details dictionary
- const dictionary& detailsDict() const
- {
- return detailsDict_;
- }
-
- //- Return the initial points for the conformalVoronoiMesh
- virtual List<Vb::Point> initialPoints() const = 0;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C
deleted file mode 100644
index 19861f3e817b26968eca7e463f5ab5e01dddfdda..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.C
+++ /dev/null
@@ -1,174 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "pointFile.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(pointFile, 0);
-addToRunTimeSelectionTable(initialPointsMethod, pointFile, dictionary);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-pointFile::pointFile
-(
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
-)
-:
- initialPointsMethod(typeName, initialPointsDict, cvMesh),
- pointFileName_(detailsDict().lookup("pointFile"))
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-List<Vb::Point> pointFile::initialPoints() const
-{
- pointIOField points
- (
- IOobject
- (
- pointFileName_.name(),
- cvMesh_.time().constant(),
- cvMesh_.time(),
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- )
- );
-
- Info<< " Inserting points from file " << pointFileName_ << endl;
-
- if (points.empty())
- {
- FatalErrorIn("List<Vb::Point> pointFile::initialPoints() const")
- << "Point file contain no points"
- << exit(FatalError) << endl;
- }
-
- if (Pstream::parRun())
- {
- // Testing filePath to see if the file originated in a processor
- // directory, if so, assume that the points in each processor file
- // are unique. They are unlikely to belong on the current
- // processor as the background mesh is unlikely to be the same.
-
- const bool isParentFile = (points.objectPath() != points.filePath());
-
- if (!isParentFile)
- {
- cvMesh_.decomposition().distributePoints(points);
- }
- else
- {
- // Otherwise, this is assumed to be points covering the whole
- // domain, so filter the points to be only those on this processor
- boolList procPt(cvMesh_.positionOnThisProc(points));
-
- List<boolList> allProcPt(Pstream::nProcs());
-
- allProcPt[Pstream::myProcNo()] = procPt;
-
- Pstream::gatherList(allProcPt);
-
- Pstream::scatterList(allProcPt);
-
- forAll(procPt, ptI)
- {
- bool foundAlready = false;
-
- forAll(allProcPt, procI)
- {
- // If a processor with a lower index has found this point
- // to insert already, defer to it and don't insert.
- if (foundAlready)
- {
- allProcPt[procI][ptI] = false;
- }
- else if (allProcPt[procI][ptI])
- {
- foundAlready = true;
- }
- }
- }
-
- procPt = allProcPt[Pstream::myProcNo()];
-
- inplaceSubset(procPt, points);
- }
- }
-
- Field<bool> insidePoints = cvMesh_.geometryToConformTo().wellInside
- (
- points,
- minimumSurfaceDistanceCoeffSqr_
- *sqr
- (
- cvMesh_.cellShapeControls().cellSize(points)
- )
- );
-
- DynamicList<Vb::Point> initialPoints(insidePoints.size()/10);
-
- forAll(insidePoints, i)
- {
- if (insidePoints[i])
- {
- const point& p(points[i]);
-
- initialPoints.append(Vb::Point(p.x(), p.y(), p.z()));
- }
- }
-
- initialPoints.shrink();
-
- label nPointsRejected = points.size() - initialPoints.size();
-
- if (Pstream::parRun())
- {
- reduce(nPointsRejected, sumOp<label>());
- }
-
- if (nPointsRejected)
- {
- Info<< " " << nPointsRejected << " points rejected from "
- << pointFileName_.name() << endl;
- }
-
- return initialPoints;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.H
deleted file mode 100644
index bcb898bac67e7ce41449791694f34b77b9206ae3..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/pointFile/pointFile.H
+++ /dev/null
@@ -1,100 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::pointFile
-
-Description
- Inserts points at locations specified in a pointFile into the surfaces to
- be conformed to of the conformalVoronoiMesh
-
-SourceFiles
- pointFile.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef pointFile_H
-#define pointFile_H
-
-#include "fileName.H"
-#include "pointIOField.H"
-#include "initialPointsMethod.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class pointFile Declaration
-\*---------------------------------------------------------------------------*/
-
-class pointFile
-:
- public initialPointsMethod
-{
-
-private:
-
- // Private data
-
- //- The initial cell spacing
- fileName pointFileName_;
-
-
-public:
-
- //- Runtime type information
- TypeName("pointFile");
-
- // Constructors
-
- //- Construct from components
- pointFile
- (
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
- );
-
-
- //- Destructor
- virtual ~pointFile()
- {}
-
-
- // Member Functions
-
- //- Return the initial points for the conformalVoronoiMesh
- virtual List<Vb::Point> initialPoints() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/uniformGrid/uniformGrid.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/uniformGrid/uniformGrid.C
deleted file mode 100644
index 2538c90702d18efb3548ead731d88ab57bacf1ae..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/uniformGrid/uniformGrid.C
+++ /dev/null
@@ -1,171 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "uniformGrid.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(uniformGrid, 0);
-addToRunTimeSelectionTable(initialPointsMethod, uniformGrid, dictionary);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-uniformGrid::uniformGrid
-(
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
-)
-:
- initialPointsMethod(typeName, initialPointsDict, cvMesh),
- initialCellSize_(readScalar(detailsDict().lookup("initialCellSize"))),
- randomiseInitialGrid_(detailsDict().lookup("randomiseInitialGrid")),
- randomPerturbationCoeff_
- (
- readScalar(detailsDict().lookup("randomPerturbationCoeff"))
- )
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-List<Vb::Point> uniformGrid::initialPoints() const
-{
- boundBox bb;
-
- // Pick up the bounds of this processor, or the whole geometry, depending
- // on whether this is a parallel run.
- if (Pstream::parRun())
- {
- bb = cvMesh_.decomposition().procBounds();
- }
- else
- {
- bb = cvMesh_.geometryToConformTo().globalBounds();
- }
-
- scalar x0 = bb.min().x();
- scalar xR = bb.max().x() - x0;
- label ni = label(xR/initialCellSize_);
-
- scalar y0 = bb.min().y();
- scalar yR = bb.max().y() - y0;
- label nj = label(yR/initialCellSize_);
-
- scalar z0 = bb.min().z();
- scalar zR = bb.max().z() - z0;
- label nk = label(zR/initialCellSize_);
-
- vector delta(xR/ni, yR/nj, zR/nk);
-
- delta *= pow((1.0),-(1.0/3.0));
-
- Random& rndGen = cvMesh_.rndGen();
-
- scalar pert = randomPerturbationCoeff_*cmptMin(delta);
-
- // Initialise points list
- DynamicList<Vb::Point> initialPoints(ni*nj*nk/10);
-
- for (label i = 0; i < ni; i++)
- {
- for (label j = 0; j < nj; j++)
- {
- // Generating, testing and adding points one line at a time to
- // reduce the memory requirement for cases with bounding boxes that
- // are very large in comparison to the volume to be filled
-
- label pI = 0;
-
- pointField points(nk);
-
- for (label k = 0; k < nk; k++)
- {
- point p
- (
- x0 + (i + 0.5)*delta.x(),
- y0 + (j + 0.5)*delta.y(),
- z0 + (k + 0.5)*delta.z()
- );
-
- if (randomiseInitialGrid_)
- {
- p.x() += pert*(rndGen.scalar01() - 0.5);
- p.y() += pert*(rndGen.scalar01() - 0.5);
- p.z() += pert*(rndGen.scalar01() - 0.5);
- }
-
- if
- (
- Pstream::parRun()
- && !cvMesh_.decomposition().positionOnThisProcessor(p)
- )
- {
- // Skip this point if, in parallel, this position is not on
- // this processor.
- continue;
- }
-
- points[pI++] = p;
- }
-
- points.setSize(pI);
-
- Field<bool> insidePoints = cvMesh_.geometryToConformTo().wellInside
- (
- points,
- minimumSurfaceDistanceCoeffSqr_
- *sqr
- (
- cvMesh_.cellShapeControls().cellSize(points)
- )
- );
-
- forAll(insidePoints, i)
- {
- if (insidePoints[i])
- {
- const point& p(points[i]);
-
- initialPoints.append(Vb::Point(p.x(), p.y(), p.z()));
- }
- }
- }
- }
-
- return initialPoints.shrink();
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/uniformGrid/uniformGrid.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/uniformGrid/uniformGrid.H
deleted file mode 100644
index 913d2a5a986043f09ba71b99a527114d6fe89681..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/initialPointsMethod/uniformGrid/uniformGrid.H
+++ /dev/null
@@ -1,104 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::uniformGrid
-
-Description
- Generate a uniform grid of points inside the surfaces to be
- conformed to of the conformalVoronoiMesh
-
-SourceFiles
- uniformGrid.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef uniformGrid_H
-#define uniformGrid_H
-
-#include "initialPointsMethod.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class uniformGrid Declaration
-\*---------------------------------------------------------------------------*/
-
-class uniformGrid
-:
- public initialPointsMethod
-{
-
-private:
-
- // Private data
-
- //- The initial cell spacing
- scalar initialCellSize_;
-
- //- Should the initial positions be randomised
- Switch randomiseInitialGrid_;
-
- //- Randomise the initial positions by fraction of the initialCellSize_
- scalar randomPerturbationCoeff_;
-
-
-public:
-
- //- Runtime type information
- TypeName("uniformGrid");
-
- // Constructors
-
- //- Construct from components
- uniformGrid
- (
- const dictionary& initialPointsDict,
- const conformalVoronoiMesh& cvMesh
- );
-
-
- //- Destructor
- virtual ~uniformGrid()
- {}
-
-
- // Member Functions
-
- //- Return the initial points for the conformalVoronoiMesh
- virtual List<Vb::Point> initialPoints() const;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/adaptiveLinear/adaptiveLinear.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/adaptiveLinear/adaptiveLinear.C
deleted file mode 100644
index 3e33715cb5af7b71c12c4de7931df3691f722595..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/adaptiveLinear/adaptiveLinear.C
+++ /dev/null
@@ -1,87 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "adaptiveLinear.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(adaptiveLinear, 0);
-addToRunTimeSelectionTable(relaxationModel, adaptiveLinear, dictionary);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-adaptiveLinear::adaptiveLinear
-(
- const dictionary& relaxationDict,
- const Time& runTime
-)
-:
- relaxationModel(typeName, relaxationDict, runTime),
- relaxationStart_(readScalar(coeffDict().lookup("relaxationStart"))),
- relaxationEnd_(readScalar(coeffDict().lookup("relaxationEnd"))),
- lastTimeValue_(runTime_.time().timeOutputValue()),
- relaxation_(relaxationStart_)
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-scalar adaptiveLinear::relaxation()
-{
- if (runTime_.time().timeOutputValue() > lastTimeValue_)
- {
- scalar currentRelaxation = relaxation_;
-
- relaxation_ -=
- (relaxation_ - relaxationEnd_)
- /(
- (
- runTime_.time().endTime().value()
- - runTime_.time().timeOutputValue()
- )
- /(runTime_.time().timeOutputValue() - lastTimeValue_)
- + 1
- );
-
- lastTimeValue_ = runTime_.time().timeOutputValue();
-
- return currentRelaxation;
- }
-
- return relaxation_;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/adaptiveLinear/adaptiveLinear.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/adaptiveLinear/adaptiveLinear.H
deleted file mode 100644
index 02aa61256a5823f13e12c03f474102d60d41cf0c..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/adaptiveLinear/adaptiveLinear.H
+++ /dev/null
@@ -1,110 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::adaptiveLinear
-
-Description
- Produces a linear ramp which adapts its gradient to changes in
- endTime and deltaT to always arrive at the relaxationEnd value at the end of
- the run
-
-SourceFiles
- adaptiveLinear.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef adaptiveLinear_H
-#define adaptiveLinear_H
-
-#include "relaxationModel.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class adaptiveLinear Declaration
-\*---------------------------------------------------------------------------*/
-
-class adaptiveLinear
-:
- public relaxationModel
-{
-
-private:
-
- // Private data
-
- //- Relaxation coefficient at the start of the iteration sequence.
- scalar relaxationStart_;
-
- //- Relaxation coefficient at the end of the iteration sequence.
- scalar relaxationEnd_;
-
- //- Store the time when the last request was made for relaxation,
- // prevents multiple calls to relaxation in a timestep from
- // incrementing the value
- scalar lastTimeValue_;
-
- //- Current relaxation value
- scalar relaxation_;
-
-
-public:
-
- //- Runtime type information
- TypeName("adaptiveLinear");
-
- // Constructors
-
- //- Construct from components
- adaptiveLinear
- (
- const dictionary& relaxationDict,
- const Time& runTime
- );
-
-
- //- Destructor
- virtual ~adaptiveLinear()
- {}
-
-
- // Member Functions
-
- //- Return the current relaxation coefficient
- virtual scalar relaxation();
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/rampHoldFall/rampHoldFall.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/rampHoldFall/rampHoldFall.C
deleted file mode 100644
index be9b2537b3931f92eb039d34bf86218396f24bc3..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/rampHoldFall/rampHoldFall.C
+++ /dev/null
@@ -1,103 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "rampHoldFall.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(rampHoldFall, 0);
-addToRunTimeSelectionTable(relaxationModel, rampHoldFall, dictionary);
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-rampHoldFall::rampHoldFall
-(
- const dictionary& relaxationDict,
- const Time& runTime
-)
-:
- relaxationModel(typeName, relaxationDict, runTime),
- rampStartRelaxation_(readScalar(coeffDict().lookup("rampStartRelaxation"))),
- holdRelaxation_(readScalar(coeffDict().lookup("holdRelaxation"))),
- fallEndRelaxation_(readScalar(coeffDict().lookup("fallEndRelaxation"))),
- rampEndFraction_(readScalar(coeffDict().lookup("rampEndFraction"))),
- fallStartFraction_(readScalar(coeffDict().lookup("fallStartFraction"))),
- rampGradient_((holdRelaxation_ - rampStartRelaxation_)/(rampEndFraction_)),
- fallGradient_
- (
- (fallEndRelaxation_ - holdRelaxation_)/(1 - fallStartFraction_)
- )
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
-
-scalar rampHoldFall::relaxation()
-{
- scalar t = runTime_.time().timeOutputValue();
-
- scalar tStart = runTime_.time().startTime().value();
- scalar tEnd = runTime_.time().endTime().value();
- scalar tSpan = tEnd - tStart;
-
- if (tSpan < VSMALL)
- {
- return rampStartRelaxation_;
- }
-
- if (t - tStart < rampEndFraction_*tSpan)
- {
- // Ramp
-
- return rampGradient_*((t - tStart)/tSpan) + rampStartRelaxation_;
- }
- else if (t - tStart > fallStartFraction_*tSpan)
- {
- // Fall
-
- return
- fallGradient_*((t - tStart)/tSpan)
- + fallEndRelaxation_ - fallGradient_;
- }
- else
- {
- //Hold
-
- return holdRelaxation_;
- }
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/rampHoldFall/rampHoldFall.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/rampHoldFall/rampHoldFall.H
deleted file mode 100644
index 3c156c197119228cd2b028372fb3efe51ea69998..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/rampHoldFall/rampHoldFall.H
+++ /dev/null
@@ -1,115 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::rampHoldFall
-
-Description
- Piecewise linear function with a ramp from a start value to a plateaux
- value, holding at this, then a linear fall to an end value.
-
-SourceFiles
- rampHoldFall.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef rampHoldFall_H
-#define rampHoldFall_H
-
-#include "relaxationModel.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class rampHoldFall Declaration
-\*---------------------------------------------------------------------------*/
-
-class rampHoldFall
-:
- public relaxationModel
-{
-
-private:
-
- // Private data
-
- //- Relaxation coefficient at the start of the ramp
- scalar rampStartRelaxation_;
-
- //- Relaxation coefficient for the hold portion
- scalar holdRelaxation_;
-
- //- Relaxation coefficient at the end of the fall
- scalar fallEndRelaxation_;
-
- //- Fraction through the run where the ramp ends and the hold starts
- scalar rampEndFraction_;
-
- //- Fraction through the run where the hold ends and the fall starts
- scalar fallStartFraction_;
-
- //- Gradient in ramp portion, normalised against time
- scalar rampGradient_;
-
- //- Gradient in fall portion, normalised against time
- scalar fallGradient_;
-
-public:
-
- //- Runtime type information
- TypeName("rampHoldFall");
-
- // Constructors
-
- //- Construct from components
- rampHoldFall
- (
- const dictionary& relaxationDict,
- const Time& runTime
- );
-
-
- //- Destructor
- virtual ~rampHoldFall()
- {}
-
-
- // Member Functions
-
- //- Return the current relaxation coefficient
- virtual scalar relaxation();
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/relaxationModel/relaxationModel.C b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/relaxationModel/relaxationModel.C
deleted file mode 100644
index 76493390554c71640e85b5e4b4f8701a759bae49..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/relaxationModel/relaxationModel.C
+++ /dev/null
@@ -1,102 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-\*---------------------------------------------------------------------------*/
-
-#include "relaxationModel.H"
-#include "addToRunTimeSelectionTable.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-defineTypeNameAndDebug(relaxationModel, 0);
-defineRunTimeSelectionTable(relaxationModel, dictionary);
-
-
-// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
-
-relaxationModel::relaxationModel
-(
- const word& type,
- const dictionary& relaxationDict,
- const Time& runTime
-)
-:
- dictionary(relaxationDict),
- runTime_(runTime),
- coeffDict_(subDict(type + "Coeffs"))
-{}
-
-
-// * * * * * * * * * * * * * * * * * Selectors * * * * * * * * * * * * * * * //
-
-autoPtr<relaxationModel> relaxationModel::New
-(
- const dictionary& relaxationDict,
- const Time& runTime
-)
-{
- word relaxationModelTypeName
- (
- relaxationDict.lookup("relaxationModel")
- );
-
- Info<< nl << "Selecting relaxationModel "
- << relaxationModelTypeName << endl;
-
- dictionaryConstructorTable::iterator cstrIter =
- dictionaryConstructorTablePtr_->find(relaxationModelTypeName);
-
- if (cstrIter == dictionaryConstructorTablePtr_->end())
- {
- FatalErrorIn
- (
- "relaxationModel::New(const dictionary&, "
- "const conformalVoronoiMesh&)"
- ) << "Unknown relaxationModel type "
- << relaxationModelTypeName
- << endl << endl
- << "Valid relaxationModel types are :" << endl
- << dictionaryConstructorTablePtr_->toc()
- << exit(FatalError);
- }
-
- return autoPtr<relaxationModel>(cstrIter()(relaxationDict, runTime));
-}
-
-
-// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
-
-relaxationModel::~relaxationModel()
-{}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/relaxationModel/relaxationModel.H b/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/relaxationModel/relaxationModel.H
deleted file mode 100644
index 433a5d38e1f6fb1070159631a1719b0210f33046..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/conformalVoronoiMesh/relaxationModel/relaxationModel/relaxationModel.H
+++ /dev/null
@@ -1,147 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::relaxationModel
-
-Description
- Abstract base class for providing relaxation values to the cell motion
- controller
-
-SourceFiles
- relaxationModel.C
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef relaxationModel_H
-#define relaxationModel_H
-
-#include "point.H"
-#include "Time.H"
-#include "dictionary.H"
-#include "autoPtr.H"
-#include "runTimeSelectionTables.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Class relaxationModel Declaration
-\*---------------------------------------------------------------------------*/
-
-class relaxationModel
-:
- public dictionary
-{
-
-protected:
-
- // Protected data
-
- //- Reference to the conformalVoronoiMesh holding this cvControls object
- const Time& runTime_;
-
- //- Method coeffs dictionary
- dictionary coeffDict_;
-
-private:
-
- // Private Member Functions
-
- //- Disallow default bitwise copy construct
- relaxationModel(const relaxationModel&);
-
- //- Disallow default bitwise assignment
- void operator=(const relaxationModel&);
-
-
-public:
-
- //- Runtime type information
- TypeName("relaxationModel");
-
-
- // Declare run-time constructor selection table
-
- declareRunTimeSelectionTable
- (
- autoPtr,
- relaxationModel,
- dictionary,
- (
- const dictionary& relaxationDict,
- const Time& runTime
- ),
- (relaxationDict, runTime)
- );
-
-
- // Constructors
-
- //- Construct from components
- relaxationModel
- (
- const word& type,
- const dictionary& relaxationDict,
- const Time& runTime
- );
-
-
- // Selectors
-
- //- Return a reference to the selected relaxationModel
- static autoPtr<relaxationModel> New
- (
- const dictionary& relaxationDict,
- const Time& runTime
- );
-
-
- //- Destructor
- virtual ~relaxationModel();
-
-
- // Member Functions
-
- //- Const access to the coeffs dictionary
- const dictionary& coeffDict() const
- {
- return coeffDict_;
- }
-
- //- Return the current relaxation coefficient
- virtual scalar relaxation() = 0;
-};
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMesh.C b/applications/utilities/mesh/generation/cvMesh/cvMesh.C
deleted file mode 100644
index e9487b909b8bafca164f8aa01d8ee6f299bd26dd..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMesh.C
+++ /dev/null
@@ -1,124 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2011-2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Application
- cvMesh
-
-Description
- Conformal Voronoi automatic mesh generator
-
-\*---------------------------------------------------------------------------*/
-
-#include "argList.H"
-#include "conformalVoronoiMesh.H"
-#include "vtkSetWriter.H"
-
-using namespace Foam;
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-int main(int argc, char *argv[])
-{
- Foam::argList::addBoolOption
- (
- "checkGeometry",
- "check all surface geometry for quality"
- );
-
- #include "setRootCase.H"
- #include "createTime.H"
-
- runTime.functionObjects().off();
-
- const bool checkGeometry = args.optionFound("checkGeometry");
-
- IOdictionary cvMeshDict
- (
- IOobject
- (
- "cvMeshDict",
- runTime.system(),
- runTime,
- IOobject::MUST_READ_IF_MODIFIED,
- IOobject::NO_WRITE
- )
- );
-
-
- if (checkGeometry)
- {
- const searchableSurfaces allGeometry
- (
- IOobject
- (
- "cvSearchableSurfaces",
- runTime.constant(),
- "triSurface",
- runTime,
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- cvMeshDict.subDict("geometry")
- );
-
- // Write some stats
- allGeometry.writeStats(List<wordList>(0), Info);
- // Check topology
- allGeometry.checkTopology(true);
- // Check geometry
- allGeometry.checkGeometry
- (
- 100.0, // max size ratio
- 1e-9, // intersection tolerance
- autoPtr<writer<scalar> >(new vtkSetWriter<scalar>()),
- 0.01, // min triangle quality
- true
- );
-
- return 0;
- }
-
-
- conformalVoronoiMesh::debug = true;
-
- conformalVoronoiMesh mesh(runTime, cvMeshDict);
-
-
- while (runTime.loop())
- {
- Info<< nl << "Time = " << runTime.timeName() << endl;
-
- mesh.move();
-
- Info<< nl << "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
- << " ClockTime = " << runTime.elapsedClockTime() << " s"
- << endl;
- }
-
- Info<< nl << "End" << nl << endl;
-
- return 0;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMeshBackgroundMesh/Make/files b/applications/utilities/mesh/generation/cvMesh/cvMeshBackgroundMesh/Make/files
deleted file mode 100644
index 58406b931afc7b1b1b72a8c3eb68587d2c2d210d..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMeshBackgroundMesh/Make/files
+++ /dev/null
@@ -1,3 +0,0 @@
-cvMeshBackgroundMesh.C
-
-EXE = $(FOAM_APPBIN)/cvMeshBackgroundMesh
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMeshBackgroundMesh/Make/options b/applications/utilities/mesh/generation/cvMesh/cvMeshBackgroundMesh/Make/options
deleted file mode 100644
index 0322435c8c9c6d6512c5e3ec2e0a91e08199d84f..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMeshBackgroundMesh/Make/options
+++ /dev/null
@@ -1,33 +0,0 @@
-EXE_DEBUG = -DFULLDEBUG -g -O0
-EXE_FROUNDING_MATH = -frounding-math
-EXE_NDEBUG = -DNDEBUG
-
-include $(GENERAL_RULES)/CGAL
-
-EXE_INC = \
- ${EXE_FROUNDING_MATH} \
- ${EXE_NDEBUG} \
- ${CGAL_INC} \
- -I../conformalVoronoiMesh/lnInclude \
- -I$(LIB_SRC)/parallel/decompose/decompositionMethods/lnInclude \
- -I$(LIB_SRC)/edgeMesh/lnInclude \
- -I$(LIB_SRC)/triSurface/lnInclude \
- -I$(LIB_SRC)/finiteVolume/lnInclude \
- -I$(LIB_SRC)/meshTools/lnInclude \
- -I$(LIB_SRC)/dynamicMesh/lnInclude \
- -I../vectorTools
-
-EXE_LIBS = \
- $(CGAL_LIBS) \
- -lboost_thread \
- -lmpfr \
- -lgmp \
- -lconformalVoronoiMesh \
- -ldecompositionMethods /* -L$(FOAM_LIBBIN)/dummy -lscotchDecomp */ \
- -ledgeMesh \
- -ltriSurface \
- -lmeshTools \
- -lfileFormats \
- -lsampling \
- -ldynamicMesh \
- -lfiniteVolume
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMeshBackgroundMesh/cvMeshBackgroundMesh.C b/applications/utilities/mesh/generation/cvMesh/cvMeshBackgroundMesh/cvMeshBackgroundMesh.C
deleted file mode 100644
index 53766c59a02c2209f86ae725362b7a24eb8edeb5..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMeshBackgroundMesh/cvMeshBackgroundMesh.C
+++ /dev/null
@@ -1,775 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Application
- cvMeshBackGroundMesh
-
-Description
- Writes out background mesh as constructed by cvMesh and constructs
- distanceSurface.
-
-\*---------------------------------------------------------------------------*/
-
-#include "PatchTools.H"
-#include "argList.H"
-#include "Time.H"
-#include "triSurface.H"
-#include "searchableSurfaces.H"
-#include "conformationSurfaces.H"
-#include "cellShapeControl.H"
-#include "backgroundMeshDecomposition.H"
-#include "cellShape.H"
-#include "cellModeller.H"
-#include "DynamicField.H"
-#include "isoSurfaceCell.H"
-#include "vtkSurfaceWriter.H"
-#include "syncTools.H"
-
-using namespace Foam;
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-// Tolerance (as fraction of the bounding box). Needs to be fairly lax since
-// usually meshes get written with limited precision (6 digits)
-static const scalar defaultMergeTol = 1e-6;
-
-// Get merging distance when matching face centres
-scalar getMergeDistance
-(
- const argList& args,
- const Time& runTime,
- const boundBox& bb
-)
-{
- scalar mergeTol = defaultMergeTol;
- args.optionReadIfPresent("mergeTol", mergeTol);
-
- scalar writeTol =
- Foam::pow(scalar(10.0), -scalar(IOstream::defaultPrecision()));
-
- Info<< "Merge tolerance : " << mergeTol << nl
- << "Write tolerance : " << writeTol << endl;
-
- if (runTime.writeFormat() == IOstream::ASCII && mergeTol < writeTol)
- {
- FatalErrorIn("getMergeDistance")
- << "Your current settings specify ASCII writing with "
- << IOstream::defaultPrecision() << " digits precision." << endl
- << "Your merging tolerance (" << mergeTol << ") is finer than this."
- << endl
- << "Please change your writeFormat to binary"
- << " or increase the writePrecision" << endl
- << "or adjust the merge tolerance (-mergeTol)."
- << exit(FatalError);
- }
-
- scalar mergeDist = mergeTol * bb.mag();
-
- Info<< "Overall meshes bounding box : " << bb << nl
- << "Relative tolerance : " << mergeTol << nl
- << "Absolute matching distance : " << mergeDist << nl
- << endl;
-
- return mergeDist;
-}
-
-
-void printMeshData(const polyMesh& mesh)
-{
- // Collect all data on master
-
- globalIndex globalCells(mesh.nCells());
- labelListList patchNeiProcNo(Pstream::nProcs());
- labelListList patchSize(Pstream::nProcs());
- const labelList& pPatches = mesh.globalData().processorPatches();
- patchNeiProcNo[Pstream::myProcNo()].setSize(pPatches.size());
- patchSize[Pstream::myProcNo()].setSize(pPatches.size());
- forAll(pPatches, i)
- {
- const processorPolyPatch& ppp = refCast<const processorPolyPatch>
- (
- mesh.boundaryMesh()[pPatches[i]]
- );
- patchNeiProcNo[Pstream::myProcNo()][i] = ppp.neighbProcNo();
- patchSize[Pstream::myProcNo()][i] = ppp.size();
- }
- Pstream::gatherList(patchNeiProcNo);
- Pstream::gatherList(patchSize);
-
-
- // Print stats
-
- globalIndex globalBoundaryFaces(mesh.nFaces()-mesh.nInternalFaces());
-
- label maxProcCells = 0;
- label totProcFaces = 0;
- label maxProcPatches = 0;
- label totProcPatches = 0;
- label maxProcFaces = 0;
-
- for (label procI = 0; procI < Pstream::nProcs(); procI++)
- {
- Info<< endl
- << "Processor " << procI << nl
- << " Number of cells = " << globalCells.localSize(procI)
- << endl;
-
- label nProcFaces = 0;
-
- const labelList& nei = patchNeiProcNo[procI];
-
- forAll(patchNeiProcNo[procI], i)
- {
- Info<< " Number of faces shared with processor "
- << patchNeiProcNo[procI][i] << " = " << patchSize[procI][i]
- << endl;
-
- nProcFaces += patchSize[procI][i];
- }
-
- Info<< " Number of processor patches = " << nei.size() << nl
- << " Number of processor faces = " << nProcFaces << nl
- << " Number of boundary faces = "
- << globalBoundaryFaces.localSize(procI) << endl;
-
- maxProcCells = max(maxProcCells, globalCells.localSize(procI));
- totProcFaces += nProcFaces;
- totProcPatches += nei.size();
- maxProcPatches = max(maxProcPatches, nei.size());
- maxProcFaces = max(maxProcFaces, nProcFaces);
- }
-
- // Stats
-
- scalar avgProcCells = scalar(globalCells.size())/Pstream::nProcs();
- scalar avgProcPatches = scalar(totProcPatches)/Pstream::nProcs();
- scalar avgProcFaces = scalar(totProcFaces)/Pstream::nProcs();
-
- // In case of all faces on one processor. Just to avoid division by 0.
- if (totProcPatches == 0)
- {
- avgProcPatches = 1;
- }
- if (totProcFaces == 0)
- {
- avgProcFaces = 1;
- }
-
- Info<< nl
- << "Number of processor faces = " << totProcFaces/2 << nl
- << "Max number of cells = " << maxProcCells
- << " (" << 100.0*(maxProcCells-avgProcCells)/avgProcCells
- << "% above average " << avgProcCells << ")" << nl
- << "Max number of processor patches = " << maxProcPatches
- << " (" << 100.0*(maxProcPatches-avgProcPatches)/avgProcPatches
- << "% above average " << avgProcPatches << ")" << nl
- << "Max number of faces between processors = " << maxProcFaces
- << " (" << 100.0*(maxProcFaces-avgProcFaces)/avgProcFaces
- << "% above average " << avgProcFaces << ")" << nl
- << endl;
-}
-
-
-// Return cellID
-label cellLabel
-(
- const Vector<label>& nCells,
- const label i,
- const label j,
- const label k
-)
-{
- return i*nCells[1]*nCells[2]+j*nCells[2]+k;
-}
-
-label vtxLabel
-(
- const Vector<label>& nCells,
- const label i,
- const label j,
- const label k
-)
-{
- Vector<label> nPoints
- (
- nCells[0]+1,
- nCells[1]+1,
- nCells[2]+1
- );
- return i*nPoints[1]*nPoints[2]+j*nPoints[2]+k;
-}
-
-
-autoPtr<polyMesh> generateHexMesh
-(
- const IOobject& io,
- const point& origin,
- const vector& cellSize,
- const Vector<label>& nCells
-)
-{
- pointField points;
- if (nCells[0]+nCells[1]+nCells[2] > 0)
- {
- points.setSize((nCells[0]+1)*(nCells[1]+1)*(nCells[2]+1));
-
- // Generate points
- for (label i = 0; i <= nCells[0]; i++)
- {
- for (label j = 0; j <= nCells[1]; j++)
- {
- for (label k = 0; k <= nCells[2]; k++)
- {
- point pt = origin;
- pt.x() += i*cellSize[0];
- pt.y() += j*cellSize[1];
- pt.z() += k*cellSize[2];
- points[vtxLabel(nCells, i, j, k)] = pt;
- }
- }
- }
- }
-
-
- const cellModel& hex = *(cellModeller::lookup("hex"));
- cellShapeList cellShapes(nCells[0]*nCells[1]*nCells[2]);
-
- labelList hexPoints(8);
- label cellI = 0;
- for (label i = 0; i < nCells[0]; i++)
- {
- for (label j = 0; j < nCells[1]; j++)
- {
- for (label k = 0; k < nCells[2]; k++)
- {
- hexPoints[0] = vtxLabel(nCells, i, j, k);
- hexPoints[1] = vtxLabel(nCells, i+1, j, k);
- hexPoints[2] = vtxLabel(nCells, i+1, j+1, k);
- hexPoints[3] = vtxLabel(nCells, i, j+1, k);
- hexPoints[4] = vtxLabel(nCells, i, j, k+1);
- hexPoints[5] = vtxLabel(nCells, i+1, j, k+1);
- hexPoints[6] = vtxLabel(nCells, i+1, j+1, k+1);
- hexPoints[7] = vtxLabel(nCells, i, j+1, k+1);
- cellShapes[cellI++] = cellShape(hex, hexPoints);
- }
- }
- }
-
- faceListList boundary(0);
- wordList patchNames(0);
- wordList patchTypes(0);
- word defaultFacesName = "defaultFaces";
- word defaultFacesType = polyPatch::typeName;
- wordList patchPhysicalTypes(0);
-
- return autoPtr<polyMesh>
- (
- new polyMesh
- (
- io,
- xferMoveTo<pointField>(points),
- cellShapes,
- boundary,
- patchNames,
- patchTypes,
- defaultFacesName,
- defaultFacesType,
- patchPhysicalTypes
- )
- );
-}
-
-
-// Determine for every point a signed distance to the nearest surface
-// (outside is positive)
-tmp<scalarField> signedDistance
-(
- const scalarField& distSqr,
- const pointField& points,
- const searchableSurfaces& geometry,
- const labelList& surfaces
-)
-{
- tmp<scalarField> tfld(new scalarField(points.size(), Foam::sqr(GREAT)));
- scalarField& fld = tfld();
-
- // Find nearest
- List<pointIndexHit> nearest;
- labelList nearestSurfaces;
- searchableSurfacesQueries::findNearest
- (
- geometry,
- surfaces,
- points,
- scalarField(points.size(), Foam::sqr(GREAT)),//distSqr
- nearestSurfaces,
- nearest
- );
-
- // Determine sign of nearest. Sort by surface to do this.
- DynamicField<point> surfPoints(points.size());
- DynamicList<label> surfIndices(points.size());
-
- forAll(surfaces, surfI)
- {
- // Extract points on this surface
- surfPoints.clear();
- surfIndices.clear();
- forAll(nearestSurfaces, i)
- {
- if (nearestSurfaces[i] == surfI)
- {
- surfPoints.append(points[i]);
- surfIndices.append(i);
- }
- }
-
- // Calculate sideness of these surface points
- label geomI = surfaces[surfI];
- List<searchableSurface::volumeType> volType;
- geometry[geomI].getVolumeType(surfPoints, volType);
-
- // Push back to original
- forAll(volType, i)
- {
- label pointI = surfIndices[i];
- scalar dist = mag(points[pointI] - nearest[pointI].hitPoint());
-
- searchableSurface::volumeType vT = volType[i];
-
- if (vT == searchableSurface::OUTSIDE)
- {
- fld[pointI] = dist;
- }
- else if (vT == searchableSurface::INSIDE)
- {
- fld[i] = -dist;
- }
- else
- {
- FatalErrorIn("signedDistance()")
- << "getVolumeType failure, neither INSIDE or OUTSIDE"
- << exit(FatalError);
- }
- }
- }
-
- return tfld;
-}
-
-
-
-// Main program:
-
-int main(int argc, char *argv[])
-{
- argList::addNote
- (
- "Generate cvMesh-consistent representation of surfaces"
- );
- argList::addBoolOption
- (
- "writeMesh",
- "write the resulting mesh and distance fields"
- );
- argList::addOption
- (
- "mergeTol",
- "scalar",
- "specify the merge distance relative to the bounding box size "
- "(default 1e-6)"
- );
-
- #include "setRootCase.H"
- #include "createTime.H"
- runTime.functionObjects().off();
-
- const bool writeMesh = args.optionFound("writeMesh");
-
- if (writeMesh)
- {
- Info<< "Writing resulting mesh and cellDistance, pointDistance fields."
- << nl << endl;
- }
-
-
- IOdictionary cvMeshDict
- (
- IOobject
- (
- "cvMeshDict",
- runTime.system(),
- runTime,
- IOobject::MUST_READ_IF_MODIFIED,
- IOobject::NO_WRITE
- )
- );
-
- // Define/load all geometry
- searchableSurfaces allGeometry
- (
- IOobject
- (
- "cvSearchableSurfaces",
- runTime.constant(),
- "triSurface",
- runTime,
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- cvMeshDict.subDict("geometry")
- );
-
- Random rndGen(64293*Pstream::myProcNo());
-
- conformationSurfaces geometryToConformTo
- (
- runTime,
- rndGen,
- allGeometry,
- cvMeshDict.subDict("surfaceConformation")
- );
-
- autoPtr<cellShapeControl> cellShapeControls
- (
- cellShapeControl::New
- (
- runTime,
- cvMeshDict.subDict("motionControl"),
- allGeometry,
- geometryToConformTo
- )
- );
-
-
- // Generate starting block mesh
- vector cellSize;
- {
- const treeBoundBox& bb = geometryToConformTo.globalBounds();
-
- // Determine the number of cells in each direction.
- const vector span = bb.span();
- vector nScalarCells = span/cellShapeControls().defaultCellSize();
-
- // Calculate initial cell size to be a little bit smaller than the
- // defaultCellSize to avoid initial refinement triggering.
- Vector<label> nCells = Vector<label>
- (
- label(nScalarCells.x())+2,
- label(nScalarCells.y())+2,
- label(nScalarCells.z())+2
- );
- cellSize = vector
- (
- span[0]/nCells[0],
- span[1]/nCells[1],
- span[2]/nCells[2]
- );
-
- Info<< "Generating initial hex mesh with" << nl
- << " bounding box : " << bb << nl
- << " nCells : " << nCells << nl
- << " cellSize : " << cellSize << nl
- << endl;
-
- autoPtr<polyMesh> meshPtr
- (
- generateHexMesh
- (
- IOobject
- (
- polyMesh::defaultRegion,
- runTime.constant(),
- runTime
- ),
- bb.min(),
- cellSize,
- (
- Pstream::master()
- ? nCells
- : Vector<label>(0, 0, 0)
- )
- )
- );
- Info<< "Writing initial hex mesh to " << meshPtr().instance() << nl
- << endl;
- meshPtr().write();
- }
-
- // Distribute the initial mesh
- if (Pstream::parRun())
- {
-# include "createMesh.H"
- Info<< "Loaded mesh:" << endl;
- printMeshData(mesh);
-
- // Allocate a decomposer
- IOdictionary decompositionDict
- (
- IOobject
- (
- "decomposeParDict",
- runTime.system(),
- mesh,
- IOobject::MUST_READ_IF_MODIFIED,
- IOobject::NO_WRITE
- )
- );
-
- autoPtr<decompositionMethod> decomposer
- (
- decompositionMethod::New
- (
- decompositionDict
- )
- );
-
- labelList decomp = decomposer().decompose(mesh, mesh.cellCentres());
-
- // Global matching tolerance
- const scalar tolDim = getMergeDistance
- (
- args,
- runTime,
- mesh.bounds()
- );
-
- // Mesh distribution engine
- fvMeshDistribute distributor(mesh, tolDim);
-
- Info<< "Wanted distribution:"
- << distributor.countCells(decomp) << nl << endl;
-
- // Do actual sending/receiving of mesh
- autoPtr<mapDistributePolyMesh> map = distributor.distribute(decomp);
-
- // Print some statistics
- //Info<< "After distribution:" << endl;
- //printMeshData(mesh);
-
- mesh.setInstance(runTime.constant());
- Info<< "Writing redistributed mesh" << nl << endl;
- mesh.write();
- }
-
-
- Info<< "Refining backgroud mesh according to cell size specification" << nl
- << endl;
-
- backgroundMeshDecomposition backgroundMesh
- (
- 1.0, //spanScale,ratio of poly cell size v.s. hex cell size
- 0.0, //minCellSizeLimit
- 0, //minLevels
- 4, //volRes, check multiple points per cell
- 20.0, //maxCellWeightCoeff
- runTime,
- geometryToConformTo,
- cellShapeControls(),
- rndGen,
- cvMeshDict
- );
-
- if (writeMesh)
- {
- runTime++;
- Info<< "Writing mesh to " << runTime.timeName() << endl;
- backgroundMesh.mesh().write();
- }
-
- const scalar tolDim = getMergeDistance
- (
- args,
- runTime,
- backgroundMesh.mesh().bounds()
- );
-
-
- faceList isoFaces;
- pointField isoPoints;
-
- {
- // Apply a distanceSurface to it.
- const fvMesh& fvm = backgroundMesh.mesh();
-
- volScalarField cellDistance
- (
- IOobject
- (
- "cellDistance",
- fvm.time().timeName(),
- fvm.time(),
- IOobject::NO_READ,
- IOobject::NO_WRITE,
- false
- ),
- fvm,
- dimensionedScalar("zero", dimLength, 0)
- );
-
- const searchableSurfaces& geometry = geometryToConformTo.geometry();
- const labelList& surfaces = geometryToConformTo.surfaces();
-
-
- // Get maximum search size per cell
- scalarField distSqr(cellDistance.size());
-
- const labelList& cellLevel = backgroundMesh.cellLevel();
- forAll(cellLevel, cellI)
- {
- // The largest edge of the cell will always be less than the
- // span of the bounding box of the cell.
- distSqr[cellI] = magSqr(cellSize)/pow(2, cellLevel[cellI]);
- }
-
- {
- // Internal field
- cellDistance.internalField() = signedDistance
- (
- distSqr,
- fvm.C(),
- geometry,
- surfaces
- );
- // Patch fields
- forAll(fvm.C().boundaryField(), patchI)
- {
- const pointField& cc = fvm.C().boundaryField()[patchI];
- fvPatchScalarField& fld = cellDistance.boundaryField()[patchI];
- scalarField patchDistSqr
- (
- fld.patch().patchInternalField(distSqr)
- );
- fld = signedDistance(patchDistSqr, cc, geometry, surfaces);
- }
-
- // On processor patches the fvm.C() will already be the cell centre
- // on the opposite side so no need to swap cellDistance.
-
- if (writeMesh)
- {
- cellDistance.write();
- }
- }
-
-
- // Distance to points
- pointScalarField pointDistance
- (
- IOobject
- (
- "pointDistance",
- fvm.time().timeName(),
- fvm.time(),
- IOobject::NO_READ,
- IOobject::NO_WRITE,
- false
- ),
- pointMesh::New(fvm),
- dimensionedScalar("zero", dimLength, 0)
- );
- {
- scalarField pointDistSqr(fvm.nPoints(), -sqr(GREAT));
- for (label faceI = 0; faceI < fvm.nInternalFaces(); faceI++)
- {
- label own = fvm.faceOwner()[faceI];
- label ownDistSqr = distSqr[own];
-
- const face& f = fvm.faces()[faceI];
- forAll(f, fp)
- {
- pointDistSqr[f[fp]] = max(pointDistSqr[f[fp]], ownDistSqr);
- }
- }
- syncTools::syncPointList
- (
- fvm,
- pointDistSqr,
- maxEqOp<scalar>(),
- -sqr(GREAT) // null value
- );
-
- pointDistance.internalField() = signedDistance
- (
- pointDistSqr,
- fvm.points(),
- geometry,
- surfaces
- );
-
- if (writeMesh)
- {
- pointDistance.write();
- }
- }
-
- isoSurfaceCell iso
- (
- fvm,
- cellDistance,
- pointDistance,
- 0, //distance,
- false //regularise
- );
-
- isoFaces.setSize(iso.size());
- forAll(isoFaces, i)
- {
- isoFaces[i] = iso[i].triFaceFace();
- }
- isoPoints = iso.points();
- }
-
-
- pointField mergedPoints;
- faceList mergedFaces;
- labelList pointMergeMap;
- PatchTools::gatherAndMerge
- (
- tolDim,
- primitivePatch
- (
- SubList<face>(isoFaces, isoFaces.size()),
- isoPoints
- ),
- mergedPoints,
- mergedFaces,
- pointMergeMap
- );
-
- vtkSurfaceWriter writer;
- writer.write
- (
- runTime.path(),
- "iso",
- mergedPoints,
- mergedFaces
- );
-
- Info<< "End\n" << endl;
-
- return 0;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMeshDict b/applications/utilities/mesh/generation/cvMesh/cvMeshDict
deleted file mode 100644
index 2c71c50e56e9acdc75727b7e98c3ffd13b823613..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMeshDict
+++ /dev/null
@@ -1,533 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object cvMeshDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-
-/*
-
-Control dictionary for cvMesh - polyhedral mesh generator.
-
-cvMesh phases:
-1. fill volume with initial points (initialPoints subdictionary). An option
- is to reread from previous set of points.
-
-2. internal point motion (motionControl subdictionary)
-
-3. every once in a while add point duplets/triplets to conform to
- surfaces and features (surfaceConformation subdictionary)
-
-4. back to 2
-
-5. construct polyMesh.
- - filter (polyMeshFiltering subdictionary)
- - check (meshQualityControls subdictionary) and undo filtering
-
-
-See also cvControls.H in the conformalVoronoiMesh library
-
-*/
-
-
-// Important:
-// ----------
-// Any scalar with a name <name>Coeff specifies a value that will be implemented
-// as a faction of the local target cell size
-// Any scalar with a name <name>Size specifies an absolute size.
-
-
-// Geometry. Definition of all surfaces. All surfaces are of class
-// searchableSurface.
-// Surfaces need to be (almost) closed - use closedTriSurfaceMesh
-// if they are not topologically closed. Surfaces need to be oriented so
-// the space to be meshed is always on the inside of all surfaces. Use e.g.
-// surfaceOrient.
-geometry
-{
- // Surface to conform to
- flange.obj
- {
- type triSurfaceMesh;
- }
-
- // Surface used for cell size control
- ref7.stl
- {
- name ref7;
- type triSurfaceMesh;
- }
-
- // Surface used for cell size control
- tunnel_APPROACH_INLET.obj
- {
- type triSurfaceMesh;
- }
-}
-
-
-// Controls for conforming to the surfaces.
-surfaceConformation
-{
- // A point inside surfaces that is inside mesh.
- locationInMesh (0 0 0);
-
- // How far apart are point-duplets generated. Balance this between
- // - very low distance: little chance of interference from other
- // surfaces
- // - largish distance: less non-orthogonality in final cell
- // (circumcentre far away from centroid)
- pointPairDistanceCoeff 0.1;
-
- // Mixed feature points - connected to both inside and outside edges.
- // Recreated by inserting triplets of points to recreate a single edge.
- // Done for all edges emanating from point. triplets of points get inserted
- // mixedFeaturePointPPDistanceCoeff distance away from feature point.
- // Set to a negative number to disable.
- mixedFeaturePointPPDistanceCoeff 5.0; //-1;
-
- // Distance to a feature point within which surface and edge
- // conformation points are excluded - fraction of the local target
- // cell size
- featurePointExclusionDistanceCoeff 0.4;
-
- // Distance to an existing feature edge conformation location
- // within which other edge conformation location are excluded -
- // fraction of the local target cell size
- featureEdgeExclusionDistanceCoeff 0.2;
-
- // Optimisation: do not check for surface intersection (of dual edges)
- // for points near to surface.
- surfaceSearchDistanceCoeff 2.5;
-
- // Maximum allowable protrusion through the surface before
- // conformation points are added - fraction of the local target
- // cell size. These small protusions are (hopefully) done by mesh filtering
- // instead.
- maxSurfaceProtrusionCoeff 0.1;
-
- // If feature edge with large angle (so more than 125 degrees) introduce
- // additional points to create two half angled cells (= mitering).
- maxQuadAngle 125;
-
- // Frequency to redo surface conformation (expensive).
- surfaceConformationRebuildFrequency 10;
-
- // Initial and intermediate controls
- coarseConformationControls
- {
- // Initial conformation
- initial
- {
- // We've got a point poking through the surface. Don't do any
- // surface conformation if near feature edge (since feature edge
- // conformation should have priority)
-
- // distance to search for near feature edges
- edgeSearchDistCoeff 1.1;
-
- // Proximity to a feature edge where a surface hit is
- // not created, only the edge conformation is created
- // - fraction of the local target cell size. Coarse
- // conformation, initial protrusion tests.
- surfacePtReplaceDistCoeff 0.5;
- }
-
- // Same for iterations
- iteration
- {
- edgeSearchDistCoeff 1.25;
- surfacePtReplaceDistCoeff 0.7;
- }
-
- // Stop either at maxIterations or if the number of surface pokes
- // is very small (iterationToInitialHitRatioLimit * initial number)
- // Note: perhaps iterationToInitialHitRatioLimit should be absolute
- // count?
- maxIterations 15;
-
- iterationToInitialHitRatioLimit 0.001;
- }
-
- // Final (at endTime) controls
- fineConformationControls
- {
- initial
- {
- edgeSearchDistCoeff 1.1;
- surfacePtReplaceDistCoeff 0.5;
- }
-
- iteration
- {
- edgeSearchDistCoeff 1.25;
- surfacePtReplaceDistCoeff 0.7;
- }
-
- maxIterations 15;
-
- iterationToInitialHitRatioLimit 0.001;
- }
-
- // Geometry to mesh to
- geometryToConformTo
- {
- flange.obj
- {
- featureMethod extendedFeatureEdgeMesh; // or none;
- extendedFeatureEdgeMesh "flange.extendedFeatureEdgeMesh";
- }
- }
-
- // Additional features.
- additionalFeatures
- {
- //line
- //{
- // featureMethod extendedFeatureEdgeMesh; // or none;
- // extendedFeatureEdgeMesh "line.extendedFeatureEdgeMesh";
- //}
- }
-}
-
-
-// Controls for seeding initial points and general control of the target
-// cell size (used everywhere)
-initialPoints
-{
- // Do not place point closer than minimumSurfaceDistanceCoeff
- // to the surface. Is fraction of local target cell size (see below)
- minimumSurfaceDistanceCoeff 0.55;
-
- initialPointsMethod autoDensity;
- // initialPointsMethod uniformGrid;
- // initialPointsMethod bodyCentredCubic;
- // initialPointsMethod pointFile;
-
-
- // Take boundbox of all geometry. Sample with this box. If too much
- // samples in box (due to target cell size) split box.
- autoDensityDetails
- {
- // Initial number of refinement levels. Needs to be enough to pick
- // up features due to size ratio. If not enough it will take longer
- // to determine point seeding.
- minLevels 4;
- // Split box if ratio of min to max cell size larger than maxSizeRatio
- maxSizeRatio 5.0;
- // Per box sample 5x5x5 internally
- sampleResolution 5;
- // Additionally per face of the box sample 5x5
- surfaceSampleResolution 5;
- }
-
- uniformGridDetails
- {
- // Absolute cell size.
- initialCellSize 0.0015;
- randomiseInitialGrid yes;
- randomPerturbationCoeff 0.02;
- }
-
- bodyCentredCubicDetails
- {
- initialCellSize 0.0015;
- randomiseInitialGrid no;
- randomPerturbationCoeff 0.1;
- }
-
- pointFileDetails
- {
- // Reads points from file. Still rejects points that are too
- // close to the surface (minimumSurfaceDistanceCoeff) or on the
- // wrong side of the surfaces.
- pointFile "constant/internalDelaunayVertices";
- }
-}
-
-
-// Control size of voronoi cells i.e. distance between points. This
-// determines the target cell size which is used everywhere.
-// It determines the cell size given a location. It then uses all
-// the rules
-// - defaultCellSize
-// - cellShapeControl
-// to determine target cell size. Rule with highest priority wins. If same
-// priority smallest cell size wins.
-motionControl
-{
- // Absolute cell size of back ground mesh. This is the maximum cell size.
- defaultCellSize 0.00075;
-
- // Absolute cell size of back ground mesh. This is the minimum cell size.
- minimumCellSize 0;
-
- //cellShapeControl constantControl;
- //cellShapeControl fileControl;
- cellShapeControl surfaceControl;
-
- // Provide constant values for cell size and alignment
- constantControlCoeffs
- {
- cellSize 0.00075;
- cellAlignment (1 0 0 0 1 0 0 0 1);
- }
-
- // Read in the points of the background grid used for cell shape control
- // from a file, with corresponding files for alignment and size
- fileControlCoeffs
- {
- pointFile "";
- sizesFile "";
- alignmentsFile "";
- }
-
- // Calculate the sizes and alignments from surfaces
- surfaceControlCoeffs
- {
- ref7_outside
- {
- // optional name of geometry
- surface ref7;
- priority 1;
- mode outside;//inside/bothSides
- cellSizeFunction linearDistance;
-
- // cellSizeFunctions:
- // uniform : uniform size
- // uniformDistance : fixed size for all within distance
- // linearSpatial : grading in specified direction only
- // linearDistance : vary linearly as distance to surface
- // surfaceOffsetLinearDistance : constant close to surface then
- // fade like linearDistance
-
- // Vary from surfaceCellSize (close to the surface) to
- // distanceCellSize (further than 'distance')
- linearDistanceCoeffs
- {
- surfaceCellSize 1e-5; // absolute size
- distanceCellSize $defaultCellSize;
- distance 1.0;
- }
- }
-
- tunnel_APPROACH_INLET.obj
- {
- priority 1;
- mode bothSides;
- cellSizeFunction surfaceOffsetLinearDistance;
- // Constant within a certain distance then linear fade away.
- // Good for layers.
- surfaceOffsetLinearDistanceCoeffs
- {
- surfaceCellSize 1e-5;
- distanceCellSize $defaultCellSize;
- surfaceOffset 0.1;
- totalDistance 1.0;
- }
- }
- }
-
- // Provide an aspect ratio and the direction in which it acts on the mesh.
- // Default is 1.0 if this section is not present in the dictionary
- cellAspectRatioControl
- {
- // Aspect ratio.
- aspectRatio 2.0;
- // Direction of action of the aspect ratio
- aspectRatioDirection (1 0 0);
- }
-
- // Underrelaxation for point motion. Simulated annealing: starts off at 1
- // and lowers to 0 (at simulation endTime) to converge points.
- // adaptiveLinear is preferred choice.
- // Points move by e.g. 10% of tet size.
- relaxationModel adaptiveLinear; //rampHoldFall
-
- adaptiveLinearCoeffs
- {
- relaxationStart 1.0;
- relaxationEnd 0.0;
- }
-
- // Output lots and lots of .obj files
- objOutput no;
-
- // Timing and memory usage.
- timeChecks yes;
-
- // Number of rays in plane parallel to nearest surface. Used to detect
- // next closest surfaces. Used to work out alignment (three vectors)
- // to surface.
- // Note that only the initial points (from the seeding) calculate this
- // information so if these are not fine enough the alignment will
- // not be correct. (any points added during the running will lookup
- // this information from the nearest initial point since it is
- // expensive)
- alignmentSearchSpokes 36;
-
- // For each delaunay edge (between two vertices, becomes
- // the Voronoi face normal) snap to the alignment direction if within
- // alignmentAcceptanceAngle. Slightly > 45 is a good choice - prevents
- // flipping.
- alignmentAcceptanceAngle 48;
-
- // How often to rebuild the alignment info (expensive)
- sizeAndAlignmentRebuildFrequency 20;
-
- // When to insert points. Not advisable change to
- // these settings.
- pointInsertionCriteria
- {
- // If edge larger than 1.75 target cell size
- // (so tets too large/stretched) insert point
- cellCentreDistCoeff 1.75;
- // Do not insert point if voronoi face (on edge) very small.
- faceAreaRatioCoeff 0.0025;
- // Insert point only if edge closely aligned to local alignment
- // direction.
- acceptanceAngle 21.5;
- }
-
- // Opposite: remove point if mesh too compressed. Do not change these
- // settings.
- pointRemovalCriteria
- {
- cellCentreDistCoeff 0.65;
- }
-
- // How to determine the point motion. All edges got some direction.
- // Sum all edge contributions to determine point motion. Weigh by
- // face area so motion is preferentially determined by large faces
- // (or more importantly ignore contribution from small faces).
- // Do not change these settings.
- faceAreaWeightModel piecewiseLinearRamp;
-
- piecewiseLinearRampCoeffs
- {
- lowerAreaFraction 0.5;
- upperAreaFraction 1.0;
- }
-}
-
-
-// After simulation, when converting to polyMesh, filter out small faces/edges.
-// Do not change. See cvControls.H
-polyMeshFiltering
-{
- // Filter small edges
- filterEdges on;
-
- // Filter small and sliver faces
- filterFaces off;
-
- // Write the underlying Delaunay tet mesh at output time
- writeTetDualMesh false; //true;
-
- // Upper limit on the size of faces to be filtered.
- // fraction of the local target cell size
- filterSizeCoeff 0.2;
-
- // Upper limit on how close two dual vertices can be before
- // being merged, fraction of the local target cell size
- mergeClosenessCoeff 1e-9;
-
- // To not filter: set maxNonOrtho to 1 (so check fails) and then
- // set continueFilteringOnBadInitialPolyMesh to false.
- continueFilteringOnBadInitialPolyMesh true;
-
- // When a face is "bad", what fraction should the filterSizeCoeff be
- // reduced by. Recursive, so for a filterCount value of fC, the
- // filterSizeCoeff is reduced by pow(filterErrorReductionCoeff, fC)
- filterErrorReductionCoeff 0.5;
-
- // Maximum number of filterCount applications before a face
- // is not attempted to be filtered
- filterCountSkipThreshold 4;
-
- // Maximum number of permissible iterations of the face collapse
- // algorithm. The value to choose will be related the maximum number
- // of points on a face that is to be collapsed and how many faces
- // around it need to be collapsed.
- maxCollapseIterations 25;
-
- // Maximum number of times an to allow an equal faceSet to be
- // returned from the face quality assessment before stopping iterations
- // to break an infinitie loop.
- maxConsecutiveEqualFaceSets 5;
- // Remove little steps (almost perp to surface) by collapsing face.
- surfaceStepFaceAngle 80;
- // Do not collapse face to edge if should become edges
- edgeCollapseGuardFraction 0.3;
- // Only collapse face to point if high aspect ratio
- maxCollapseFaceToPointSideLengthCoeff 0.35;
-}
-
-
-// Generic mesh quality settings. At any undoable phase these determine
-// where to undo. Same as in snappyHexMeshDict
-meshQualityControls
-{
- //- Maximum non-orthogonality allowed. Set to 180 to disable.
- maxNonOrtho 65;
-
- //- Max skewness allowed. Set to <0 to disable.
- maxBoundarySkewness 50;
- maxInternalSkewness 10;
-
- //- Max concaveness allowed. Is angle (in degrees) below which concavity
- // is allowed. 0 is straight face, <0 would be convex face.
- // Set to 180 to disable.
- maxConcave 80;
-
- //- Minimum pyramid volume. Is absolute volume of cell pyramid.
- // Set to a sensible fraction of the smallest cell volume expected.
- // Set to very negative number (e.g. -1E30) to disable.
- minVol -1E30;
-
- //- Minimum quality of the tet formed by the
- // variable base point minimum decomposition triangles and
- // the cell centre (so not face-centre decomposition).
- // This has to be a positive number for tracking
- // to work. Set to very negative number (e.g. -1E30) to
- // disable.
- // <0 = inside out tet,
- // 0 = flat tet
- // 1 = regular tet
- minTetQuality 1e-30;
-
- //- Minimum absolute face area. Set to <0 to disable.
- minArea -1;
-
- //- Minimum face twist. Set to <-1 to disable. dot product of face normal
- //- and face centre triangles normal
- minTwist 0.02;
-
- //- minimum normalised cell determinant
- //- 1 = hex, <= 0 = folded or flattened illegal cell
- minDeterminant 0.001;
-
- //- minFaceWeight (0 -> 0.5)
- minFaceWeight 0.02;
-
- //- minVolRatio (0 -> 1)
- minVolRatio 0.01;
-
- //must be >0 for Fluent compatibility
- minTriangleTwist -1;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/Allwmake b/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/Allwmake
deleted file mode 100755
index 98dec66c76bfc035c39136cff18ad685c707128c..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/Allwmake
+++ /dev/null
@@ -1,10 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-set -x
-
-if [ -d "${FASTDUALOCTREE_SRC_PATH}" ]
-then
- wmake
-fi
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/Make/files b/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/Make/files
deleted file mode 100644
index fbe4cfeda6cc8bd7e41dd0bc3e34eb92108cfce8..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/Make/files
+++ /dev/null
@@ -1,22 +0,0 @@
-/*
-cvMeshSurfaceSimplify_non_octree.C
-MarchingCubes/MarchingCubes.cpp
-MarchingCubes/ply.c
-*/
-
-/*
-MarchingCubes = fastdualoctree_sgp
-
-$(MarchingCubes)/data_access.cpp
-$(MarchingCubes)/fparser.cpp
-$(MarchingCubes)/fpoptimizer.cpp
-$(MarchingCubes)/MarchingCubes.cpp
-$(MarchingCubes)/mc_draw.cpp
-$(MarchingCubes)/morton.cpp
-$(MarchingCubes)/opt_octree.cpp
-$(MarchingCubes)/hash_octree.cpp
-*/
-
-cvMeshSurfaceSimplify.C
-
-EXE = $(FOAM_APPBIN)/cvMeshSurfaceSimplify
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/Make/options b/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/Make/options
deleted file mode 100644
index 7bd92a24abf566234ee02a26c3615c10151286a1..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/Make/options
+++ /dev/null
@@ -1,28 +0,0 @@
-MarchingCubes = fastdualoctree_sgp
-
-include $(GENERAL_RULES)/CGAL
-
-EXE_INC = \
- -DUNIX \
- -Wno-old-style-cast \
- /* -IMarchingCubes */ \
- -I$(FASTDUALOCTREE_SRC_PATH) \
- -I../conformalVoronoiMesh/lnInclude \
- -I$(LIB_SRC)/edgeMesh/lnInclude \
- -I$(LIB_SRC)/fileFormats/lnInclude \
- -I$(LIB_SRC)/triSurface/lnInclude \
- -I$(LIB_SRC)/meshTools/lnInclude
-
-EXE_LIBS = \
- $(CGAL_LIBS) \
- -lboost_thread \
- -lmpfr \
- -L$(FASTDUALOCTREE_SRC_PATH) -lperf_main \
- -lGL \
- -lconformalVoronoiMesh \
- -ldecompositionMethods -L$(FOAM_LIBBIN)/dummy -lscotchDecomp \
- -ledgeMesh \
- -lfileFormats \
- -ltriSurface \
- -lmeshTools \
- -ldynamicMesh
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/cvMeshSurfaceSimplify.C b/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/cvMeshSurfaceSimplify.C
deleted file mode 100644
index ae4f8812f7d7faaeac4abf525aa5262083993d80..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/cvMeshSurfaceSimplify.C
+++ /dev/null
@@ -1,639 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Application
- cvMeshSurfaceSimplify
-
-Description
- Simplifies surfaces by resampling.
-
- Uses Thomas Lewiner's topology preserving MarchingCubes.
- (http://zeus.mat.puc-rio.br/tomlew/tomlew_uk.php)
-
-\*---------------------------------------------------------------------------*/
-
-#include "argList.H"
-#include "Time.H"
-#include "searchableSurfaces.H"
-#include "conformationSurfaces.H"
-#include "triSurfaceMesh.H"
-
-#include "opt_octree.h"
-#include "cube.h"
-
-using namespace Foam;
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-class pointConversion
-{
- const vector scale_;
-
- const vector offset_;
-
-public:
-
- //- Construct from components
- pointConversion
- (
- const vector scale,
- const vector offset
- )
- :
- scale_(scale),
- offset_(offset)
- {}
-
- inline Point toLocal(const Foam::point& pt) const
- {
- Foam::point p = cmptMultiply(scale_, (pt + offset_));
- return Point(p.x(), p.y(), p.z());
- }
-
- inline Foam::point toGlobal(const Point& pt) const
- {
- point p(pt.x(), pt.y(), pt.z());
- return cmptDivide(p, scale_) - offset_;
- }
-};
-
-
-
-
-// For use in Fast-Dual Octree from Thomas Lewiner
-class distanceCalc
-:
- public ::data_access
-{
-
- const Level min_level_;
-
- const conformationSurfaces& geometryToConformTo_;
-
- const pointConversion& converter_;
-
-
- // Private Member Functions
-
- scalar signedDistance(const Foam::point& pt) const
- {
- const searchableSurfaces& geometry = geometryToConformTo_.geometry();
- const labelList& surfaces = geometryToConformTo_.surfaces();
-
- static labelList nearestSurfaces;
- static scalarField distance;
-
- static pointField samples(1);
- samples[0] = pt;
-
- searchableSurfacesQueries::signedDistance
- (
- geometry,
- surfaces,
- samples,
- scalarField(1, GREAT),
- searchableSurface::OUTSIDE,
- nearestSurfaces,
- distance
- );
-
- return distance[0];
- }
-
-
-public:
-
- // Constructors
-
- //- Construct from components
- distanceCalc
- (
- Level max_level_,
- real iso_val_,
- Level min_level,
- const conformationSurfaces& geometryToConformTo,
- const pointConversion& converter
- )
- :
- data_access(max_level_,iso_val_),
- min_level_(min_level),
- geometryToConformTo_(geometryToConformTo),
- converter_(converter)
- {}
-
-
- //- Destructor
- virtual ~distanceCalc()
- {}
-
-
- // Member Functions
-
- //- test function
- virtual bool need_refine( const Cube &c )
- {
- int l = c.lv() ;
-
- if( l >= _max_level ) return false;
- if( l < min_level_ ) return true;
-
- treeBoundBox bb
- (
- converter_.toGlobal
- (
- Point
- (
- c.xmin(),
- c.ymin(),
- c.zmin()
- )
- ),
- converter_.toGlobal
- (
- Point
- (
- c.xmax(),
- c.ymax(),
- c.zmax()
- )
- )
- );
-
- const searchableSurfaces& geometry =
- geometryToConformTo_.geometry();
- const labelList& surfaces =
- geometryToConformTo_.surfaces();
-
-
- //- Uniform refinement around surface
- {
- forAll(surfaces, i)
- {
- if (geometry[surfaces[i]].overlaps(bb))
- {
- return true;
- }
- }
- return false;
- }
-
-
- ////- Surface intersects bb (but not using intersection test)
- //scalar ccDist = signedDistance(bb.midpoint());
- //scalar ccVal = ccDist - _iso_val;
- //if (mag(ccVal) < SMALL)
- //{
- // return true;
- //}
- //const pointField points(bb.points());
- //forAll(points, pointI)
- //{
- // scalar pointVal = signedDistance(points[pointI]) - _iso_val;
- // if (ccVal*pointVal < 0)
- // {
- // return true;
- // }
- //}
- //return false;
-
-
- ////- Refinement based on intersection with multiple planes.
- //// Does not work well - too high a ratio between
- //// neighbouring cubes.
- //const pointField points(bb.points());
- //const edgeList& edges = treeBoundBox::edges;
- //pointField start(edges.size());
- //pointField end(edges.size());
- //forAll(edges, i)
- //{
- // start[i] = points[edges[i][0]];
- // end[i] = points[edges[i][1]];
- //}
- //Foam::List<Foam::List<pointIndexHit> > hitInfo;
- //labelListList hitSurfaces;
- //searchableSurfacesQueries::findAllIntersections
- //(
- // geometry,
- // surfaces,
- // start,
- // end,
- // hitSurfaces,
- // hitInfo
- //);
- //
- //// Count number of intersections
- //label nInt = 0;
- //forAll(hitSurfaces, edgeI)
- //{
- // nInt += hitSurfaces[edgeI].size();
- //}
- //
- //if (nInt == 0)
- //{
- // // No surface intersected. See if there is one inside
- // forAll(surfaces, i)
- // {
- // if (geometry[surfaces[i]].overlaps(bb))
- // {
- // return true;
- // }
- // }
- // return false;
- //}
- //
- //// Check multiple surfaces
- //label baseSurfI = -1;
- //forAll(hitSurfaces, edgeI)
- //{
- // const labelList& hSurfs = hitSurfaces[edgeI];
- // forAll(hSurfs, i)
- // {
- // if (baseSurfI == -1)
- // {
- // baseSurfI = hSurfs[i];
- // }
- // else if (baseSurfI != hSurfs[i])
- // {
- // // Multiple surfaces
- // return true;
- // }
- // }
- //}
- //
- //// Get normals
- //DynamicList<pointIndexHit> baseInfo(nInt);
- //forAll(hitInfo, edgeI)
- //{
- // const Foam::List<pointIndexHit>& hits = hitInfo[edgeI];
- // forAll(hits, i)
- // {
- // (void)hits[i].hitPoint();
- // baseInfo.append(hits[i]);
- // }
- //}
- //vectorField normals;
- //geometry[surfaces[baseSurfI]].getNormal(baseInfo, normals);
- //for (label i = 1; i < normals.size(); ++i)
- //{
- // if ((normals[0] & normals[i]) < 0.9)
- // {
- // return true;
- // }
- //}
- //labelList regions;
- //geometry[surfaces[baseSurfI]].getRegion(baseInfo, regions);
- //for (label i = 1; i < regions.size(); ++i)
- //{
- // if (regions[0] != regions[i])
- // {
- // return true;
- // }
- //}
- //return false;
-
-
-
- //samples[0] = point(c.xmin(), c.ymin(), c.zmin());
- //samples[1] = point(c.xmax(), c.ymin(), c.zmin());
- //samples[2] = point(c.xmax(), c.ymax(), c.zmin());
- //samples[3] = point(c.xmin(), c.ymax(), c.zmin());
- //
- //samples[4] = point(c.xmin(), c.ymin(), c.zmax());
- //samples[5] = point(c.xmax(), c.ymin(), c.zmax());
- //samples[6] = point(c.xmax(), c.ymax(), c.zmax());
- //samples[7] = point(c.xmin(), c.ymax(), c.zmax());
-
- //scalarField nearestDistSqr(8, GREAT);
- //
- //Foam::List<pointIndexHit> nearestInfo;
- //surf_.findNearest(samples, nearestDistSqr, nearestInfo);
- //vectorField normals;
- //surf_.getNormal(nearestInfo, normals);
- //
- //for (label i = 1; i < normals.size(); ++i)
- //{
- // if ((normals[0] & normals[i]) < 0.5)
- // {
- // return true;
- // }
- //}
- //return false;
-
- //// Check if surface octree same level
- //const labelList elems(surf_.tree().findBox(bb));
- //
- //if (elems.size() > 1)
- //{
- // return true;
- //}
- //else
- //{
- // return false;
- //}
- }
-
- //- data function
- virtual real value_at( const Cube &c )
- {
- return signedDistance(converter_.toGlobal(c)) - _iso_val;
- }
-};
-
-
-// Main program:
-
-int main(int argc, char *argv[])
-{
- argList::addNote
- (
- "Re-sample surfaces used in cvMesh operation"
- );
- argList::validArgs.append("outputName");
-
- #include "setRootCase.H"
- #include "createTime.H"
- runTime.functionObjects().off();
-
- const fileName exportName = args.args()[1];
-
- Info<< "Reading surfaces as specified in the cvMeshDict and"
- << " writing a re-sampled surface to " << exportName
- << nl << endl;
-
- cpuTime timer;
-
- IOdictionary cvMeshDict
- (
- IOobject
- (
- "cvMeshDict",
- runTime.system(),
- runTime,
- IOobject::MUST_READ_IF_MODIFIED,
- IOobject::NO_WRITE
- )
- );
-
- // Define/load all geometry
- searchableSurfaces allGeometry
- (
- IOobject
- (
- "cvSearchableSurfaces",
- runTime.constant(),
- "triSurface",
- runTime,
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- cvMeshDict.subDict("geometry")
- );
-
- Info<< "Geometry read in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
-
- Random rndGen(64293*Pstream::myProcNo());
-
- conformationSurfaces geometryToConformTo
- (
- runTime,
- rndGen,
- allGeometry,
- cvMeshDict.subDict("surfaceConformation")
- );
-
- Info<< "Set up geometry in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
-
- const searchableSurfaces& geometry = geometryToConformTo.geometry();
- const labelList& surfaces = geometryToConformTo.surfaces();
-
-
- const label minLevel = 2;
-
- // The max cube size follows from the minLevel and the default cube size
- // (1)
- const scalar maxSize = 1.0 / (1 << minLevel);
- const scalar halfMaxSize = 0.5*maxSize;
-
-
- // Scale the geometry to fit within
- // halfMaxSize .. 1-halfMaxSize
-
- scalar wantedRange = 1.0-maxSize;
-
- const treeBoundBox bb = geometryToConformTo.globalBounds();
-
- const vector scale = cmptDivide
- (
- point(wantedRange, wantedRange, wantedRange),
- bb.span()
- );
- const vector offset =
- cmptDivide
- (
- point(halfMaxSize, halfMaxSize, halfMaxSize),
- scale
- )
- -bb.min();
-
-
- const pointConversion converter(scale, offset);
-
-
- // Marching cubes
-
- OptOctree octree;
-
- distanceCalc ref
- (
- 8, //maxLevel
- 0.0, //distance
- minLevel, //minLevel
- geometryToConformTo,
- converter
- );
-
- octree.refine(&ref);
- octree.set_impl(&ref);
-
- Info<< "Calculated octree in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
- MarchingCubes& mc = octree.mc();
-
- mc.clean_all() ;
- octree.build_isosurface(&ref) ;
-
- Info<< "Constructed iso surface of distance in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
- // Write output file
- if (mc.ntrigs() > 0)
- {
- Triangle* triangles = mc.triangles();
- label nTris = mc.ntrigs();
- Foam::DynamicList<labelledTri> tris(mc.ntrigs());
- for (label triI = 0; triI < nTris; ++triI)
- {
- const Triangle& t = triangles[triI];
- if (t.v1 != t.v2 && t.v1 != t.v3 && t.v2 != t.v3)
- {
- tris.append
- (
- labelledTri
- (
- triangles[triI].v1,
- triangles[triI].v2,
- triangles[triI].v3,
- 0 // region
- )
- );
- }
- }
-
-
- Point* vertices = mc.vertices();
- pointField points(mc.nverts());
- forAll(points, pointI)
- {
- const Point& v = vertices[pointI];
- points[pointI] = converter.toGlobal(v);
- }
-
-
- // Find correspondence to original surfaces
- labelList regionOffsets(surfaces.size());
- label nRegions = 0;
- forAll(surfaces, i)
- {
- const wordList& regions = geometry[surfaces[i]].regions();
- regionOffsets[i] = nRegions;
- nRegions += regions.size();
- }
-
-
- geometricSurfacePatchList patches(nRegions);
- nRegions = 0;
- forAll(surfaces, i)
- {
- const wordList& regions = geometry[surfaces[i]].regions();
-
- forAll(regions, regionI)
- {
- patches[nRegions] = geometricSurfacePatch
- (
- "patch",
- geometry[surfaces[i]].name() + "_" + regions[regionI],
- nRegions
- );
- nRegions++;
- }
- }
-
- triSurface s(tris, patches, points, true);
- tris.clearStorage();
-
- Info<< "Extracted triSurface in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
-
- // Find out region on local surface of nearest point
- {
- Foam::List<pointIndexHit> hitInfo;
- labelList hitSurfaces;
- geometryToConformTo.findSurfaceNearest
- (
- s.faceCentres(),
- scalarField(s.size(), sqr(GREAT)),
- hitInfo,
- hitSurfaces
- );
-
- // Get region
- DynamicList<pointIndexHit> surfInfo(hitSurfaces.size());
- DynamicList<label> surfIndices(hitSurfaces.size());
-
- forAll(surfaces, surfI)
- {
- // Extract info on this surface
- surfInfo.clear();
- surfIndices.clear();
- forAll(hitSurfaces, triI)
- {
- if (hitSurfaces[triI] == surfI)
- {
- surfInfo.append(hitInfo[triI]);
- surfIndices.append(triI);
- }
- }
-
- // Calculate sideness of these surface points
- labelList region;
- geometry[surfaces[surfI]].getRegion(surfInfo, region);
-
- forAll(region, i)
- {
- label triI = surfIndices[i];
- s[triI].region() = regionOffsets[surfI]+region[i];
- }
- }
- }
-
- Info<< "Re-patched surface in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
- triSurfaceMesh smesh
- (
- IOobject
- (
- exportName,
- runTime.constant(), // instance
- "triSurface",
- runTime, // registry
- IOobject::NO_READ,
- IOobject::AUTO_WRITE,
- false
- ),
- s
- );
-
- Info<< "writing surfMesh:\n "
- << smesh.searchableSurface::objectPath() << nl << endl;
- smesh.searchableSurface::write();
-
- Info<< "Written surface in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
- }
-
- mc.clean_all() ;
-
- Info<< "End\n" << endl;
-
- return 0;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/cvMeshSurfaceSimplify_non_octree.C b/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/cvMeshSurfaceSimplify_non_octree.C
deleted file mode 100644
index c3518ef1a0365e5359f9d402068a6914053049b9..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/cvMeshSurfaceSimplify/cvMeshSurfaceSimplify_non_octree.C
+++ /dev/null
@@ -1,352 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Application
- cvMeshSurfaceSimplify
-
-Description
- Simplifies surfaces by resampling.
-
- Uses Thomas Lewiner's topology preserving MarchingCubes.
-
-\*---------------------------------------------------------------------------*/
-
-#include "argList.H"
-#include "Time.H"
-#include "searchableSurfaces.H"
-#include "conformationSurfaces.H"
-#include "triSurfaceMesh.H"
-
-#include "MarchingCubes.h"
-
-
-using namespace Foam;
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-// Main program:
-
-int main(int argc, char *argv[])
-{
- argList::addNote
- (
- "Re-sample surfaces used in cvMesh operation"
- );
- //argList::validArgs.append("inputFile");
- argList::validArgs.append("(nx ny nz)");
- argList::validArgs.append("outputName");
-
- #include "setRootCase.H"
- #include "createTime.H"
- runTime.functionObjects().off();
-
- const Vector<label> n(IStringStream(args.args()[1])());
- const fileName exportName = args.args()[2];
-
- Info<< "Reading surfaces as specified in the cvMeshDict and"
- << " writing re-sampled " << n << " to " << exportName
- << nl << endl;
-
- cpuTime timer;
-
- IOdictionary cvMeshDict
- (
- IOobject
- (
- "cvMeshDict",
- runTime.system(),
- runTime,
- IOobject::MUST_READ_IF_MODIFIED,
- IOobject::NO_WRITE
- )
- );
-
- // Define/load all geometry
- searchableSurfaces allGeometry
- (
- IOobject
- (
- "cvSearchableSurfaces",
- runTime.constant(),
- "triSurface",
- runTime,
- IOobject::MUST_READ,
- IOobject::NO_WRITE
- ),
- cvMeshDict.subDict("geometry")
- );
-
- Info<< "Geometry read in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
-
- Random rndGen(64293*Pstream::myProcNo());
-
- conformationSurfaces geometryToConformTo
- (
- runTime,
- rndGen,
- allGeometry,
- cvMeshDict.subDict("surfaceConformation")
- );
-
- Info<< "Set up geometry in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
-
-
- // Extend
- treeBoundBox bb = geometryToConformTo.globalBounds();
- {
- const vector smallVec = 0.1*bb.span();
- bb.min() -= smallVec;
- bb.max() += smallVec;
- }
-
- Info<< "Meshing to bounding box " << bb << nl << endl;
-
- const vector span(bb.span());
- const vector d
- (
- span.x()/(n.x()-1),
- span.y()/(n.y()-1),
- span.z()/(n.z()-1)
- );
-
- MarchingCubes mc(span.x(), span.y(), span.z() ) ;
- mc.set_resolution(n.x(), n.y(), n.z());
- mc.init_all() ;
-
-
- // Generate points
- pointField points(mc.size_x()*mc.size_y()*mc.size_z());
- label pointI = 0;
-
- point pt;
- for( int k = 0 ; k < mc.size_z() ; k++ )
- {
- pt.z() = bb.min().z() + k*d.z();
- for( int j = 0 ; j < mc.size_y() ; j++ )
- {
- pt.y() = bb.min().y() + j*d.y();
- for( int i = 0 ; i < mc.size_x() ; i++ )
- {
- pt.x() = bb.min().x() + i*d.x();
- points[pointI++] = pt;
- }
- }
- }
-
- Info<< "Generated " << points.size() << " sampling points in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
-
- // Compute data
- const searchableSurfaces& geometry = geometryToConformTo.geometry();
- const labelList& surfaces = geometryToConformTo.surfaces();
-
- scalarField signedDist;
- labelList nearestSurfaces;
- searchableSurfacesQueries::signedDistance
- (
- geometry,
- surfaces,
- points,
- scalarField(points.size(), sqr(GREAT)),
- searchableSurface::OUTSIDE, // for non-closed surfaces treat as
- // outside
- nearestSurfaces,
- signedDist
- );
-
- // Fill elements
- pointI = 0;
- for( int k = 0 ; k < mc.size_z() ; k++ )
- {
- for( int j = 0 ; j < mc.size_y() ; j++ )
- {
- for( int i = 0 ; i < mc.size_x() ; i++ )
- {
- mc.set_data(float(signedDist[pointI++]), i, j, k);
- }
- }
- }
-
- Info<< "Determined signed distance in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
-
- mc.run() ;
-
- Info<< "Constructed iso surface in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
-
- mc.clean_temps() ;
-
-
-
- // Write output file
- if (mc.ntrigs() > 0)
- {
- Triangle* triangles = mc.triangles();
- List<labelledTri> tris(mc.ntrigs());
- forAll(tris, triI)
- {
- tris[triI] = labelledTri
- (
- triangles[triI].v1,
- triangles[triI].v2,
- triangles[triI].v3,
- 0 // region
- );
- }
-
-
- Vertex* vertices = mc.vertices();
- pointField points(mc.nverts());
- forAll(points, pointI)
- {
- Vertex& v = vertices[pointI];
- points[pointI] = point
- (
- bb.min().x() + v.x*span.x()/mc.size_x(),
- bb.min().y() + v.y*span.y()/mc.size_y(),
- bb.min().z() + v.z*span.z()/mc.size_z()
- );
- }
-
-
- // Find correspondence to original surfaces
- labelList regionOffsets(surfaces.size());
- label nRegions = 0;
- forAll(surfaces, i)
- {
- const wordList& regions = geometry[surfaces[i]].regions();
- regionOffsets[i] = nRegions;
- nRegions += regions.size();
- }
-
-
- geometricSurfacePatchList patches(nRegions);
- nRegions = 0;
- forAll(surfaces, i)
- {
- const wordList& regions = geometry[surfaces[i]].regions();
-
- forAll(regions, regionI)
- {
- patches[nRegions] = geometricSurfacePatch
- (
- "patch",
- geometry[surfaces[i]].name() + "_" + regions[regionI],
- nRegions
- );
- nRegions++;
- }
- }
-
- triSurface s(tris, patches, points, true);
-
- Info<< "Extracted triSurface in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
-
- // Find out region on local surface of nearest point
- {
- List<pointIndexHit> hitInfo;
- labelList hitSurfaces;
- geometryToConformTo.findSurfaceNearest
- (
- s.faceCentres(),
- scalarField(s.size(), sqr(GREAT)),
- hitInfo,
- hitSurfaces
- );
-
- // Get region
- DynamicList<pointIndexHit> surfInfo(hitSurfaces.size());
- DynamicList<label> surfIndices(hitSurfaces.size());
-
- forAll(surfaces, surfI)
- {
- // Extract info on this surface
- surfInfo.clear();
- surfIndices.clear();
- forAll(hitSurfaces, triI)
- {
- if (hitSurfaces[triI] == surfI)
- {
- surfInfo.append(hitInfo[triI]);
- surfIndices.append(triI);
- }
- }
-
- // Calculate sideness of these surface points
- labelList region;
- geometry[surfaces[surfI]].getRegion(surfInfo, region);
-
- forAll(region, i)
- {
- label triI = surfIndices[i];
- s[triI].region() = regionOffsets[surfI]+region[i];
- }
- }
- }
-
- Info<< "Re-patched surface in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
-
- triSurfaceMesh smesh
- (
- IOobject
- (
- exportName,
- runTime.constant(), // instance
- "triSurface",
- runTime, // registry
- IOobject::NO_READ,
- IOobject::AUTO_WRITE,
- false
- ),
- s
- );
-
- Info<< "writing surfMesh:\n "
- << smesh.searchableSurface::objectPath() << nl << endl;
- smesh.searchableSurface::write();
-
- Info<< "Written surface in = "
- << timer.cpuTimeIncrement() << " s." << nl << endl;
- }
-
- mc.clean_all() ;
-
-
- Info<< "End\n" << endl;
-
- return 0;
-}
-
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/cvMesh/vectorTools/vectorTools.H b/applications/utilities/mesh/generation/cvMesh/vectorTools/vectorTools.H
deleted file mode 100644
index 9fb39a159bafbfb8de882cb4b469fbf6e7d14af8..0000000000000000000000000000000000000000
--- a/applications/utilities/mesh/generation/cvMesh/vectorTools/vectorTools.H
+++ /dev/null
@@ -1,157 +0,0 @@
-/*---------------------------------------------------------------------------*\
- ========= |
- \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
- \\ / O peration |
- \\ / A nd | Copyright (C) 2011 OpenFOAM Foundation
- \\/ M anipulation |
--------------------------------------------------------------------------------
-License
- This file is part of OpenFOAM.
-
- OpenFOAM is free software: you can redistribute it and/or modify it
- under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
- ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
- FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
- for more details.
-
- You should have received a copy of the GNU General Public License
- along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
-
-Class
- Foam::vectorTools
-
-Description
- Functions for analysing the relationships between vectors
-
-SourceFiles
-
-\*---------------------------------------------------------------------------*/
-
-#ifndef vectorTools_H
-#define vectorTools_H
-
-#include "vector.H"
-#include "unitConversion.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-/*---------------------------------------------------------------------------*\
- Namespace vectorTools Declaration
-\*---------------------------------------------------------------------------*/
-
-//- Collection of functions for testing relationships between two vectors.
-namespace vectorTools
-{
- //- Test if a and b are parallel: a.b = 1
- // Uses the cross product, so the tolerance is proportional to
- // the sine of the angle between a and b in radians
- template <typename T>
- bool areParallel
- (
- const Vector<T>& a,
- const Vector<T>& b,
- const T& tolerance = SMALL
- )
- {
- return (mag(a ^ b) < tolerance) ? true : false;
-// return ( mag( mag(a & b)/(mag(a)*mag(b)) - 1.0 ) < tolerance )
-// ? true
-// : false;
- }
-
- //- Test if a and b are orthogonal: a.b = 0
- // Uses the dot product, so the tolerance is proportional to
- // the cosine of the angle between a and b in radians
- template <typename T>
- bool areOrthogonal
- (
- const Vector<T>& a,
- const Vector<T>& b,
- const T& tolerance = SMALL
- )
- {
- return (mag(a & b) < tolerance) ? true : false;
- }
-
- //- Test if angle between a and b is acute: a.b > 0
- template <typename T>
- bool areAcute
- (
- const Vector<T>& a,
- const Vector<T>& b
- )
- {
- return ((a & b) > 0) ? true : false;
- }
-
- //- Test if angle between a and b is obtuse: a.b < 0
- template <typename T>
- bool areObtuse
- (
- const Vector<T>& a,
- const Vector<T>& b
- )
- {
- return ((a & b) < 0) ? true : false;
- }
-
- //- Calculate angle between a and b in radians
- template <typename T>
- T cosPhi
- (
- const Vector<T>& a,
- const Vector<T>& b,
- const T& tolerance = SMALL
- )
- {
- scalar cosPhi = (a & b)/(mag(a)*mag(b) + tolerance);
-
- // Enforce bounding between -1 and 1
- return min(max(cosPhi, -1), 1);
- }
-
- //- Calculate angle between a and b in radians
- template <typename T>
- T radAngleBetween
- (
- const Vector<T>& a,
- const Vector<T>& b,
- const T& tolerance = SMALL
- )
- {
- scalar cosPhi = (a & b)/(mag(a)*mag(b) + tolerance);
-
- // Enforce bounding between -1 and 1
- return acos( min(max(cosPhi, -1), 1) );
- }
-
- //- Calculate angle between a and b in degrees
- template <typename T>
- T degAngleBetween
- (
- const Vector<T>& a,
- const Vector<T>& b,
- const T& tolerance = SMALL
- )
- {
- return radToDeg(radAngleBetween(a, b, tolerance));
- }
-
-} // End namespace vectorTools
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-#endif
-
-// ************************************************************************* //
diff --git a/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMesh/extrude2DMesh/extrude2DMesh.C b/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMesh/extrude2DMesh/extrude2DMesh.C
index 0bbe7d926a16733c25ff9b63d58ffea347a39642..9b70418abc323a59c3c6096f2592c27e38a53230 100644
--- a/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMesh/extrude2DMesh/extrude2DMesh.C
+++ b/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMesh/extrude2DMesh/extrude2DMesh.C
@@ -2,7 +2,7 @@
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
+ \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
@@ -90,7 +90,6 @@ Foam::extrude2DMesh::extrude2DMesh
dict_(dict),
//patchDict_(dict.subDict("patchInfo")),
model_(model),
- modelType_(dict.lookup("extrudeModel")),
patchType_(dict.lookup("patchType")),
frontPatchI_(-1),
backPatchI_(-1)
diff --git a/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMesh/extrude2DMesh/extrude2DMesh.H b/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMesh/extrude2DMesh/extrude2DMesh.H
index 3b6efd267efbcc44be597de5edac863b554c616d..0c5d143c0aab283dcdd892cee7360c541f1c83f0 100644
--- a/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMesh/extrude2DMesh/extrude2DMesh.H
+++ b/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMesh/extrude2DMesh/extrude2DMesh.H
@@ -2,7 +2,7 @@
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
- \\ / A nd | Copyright (C) 2012 OpenFOAM Foundation
+ \\ / A nd | Copyright (C) 2012-2013 OpenFOAM Foundation
\\/ M anipulation |
-------------------------------------------------------------------------------
License
@@ -53,10 +53,9 @@ class polyMesh;
class polyTopoChange;
class mapPolyMesh;
class mapDistributePolyMesh;
-class polyBoundaryMesh;
/*---------------------------------------------------------------------------*\
- Class extrude2DMesh Declaration
+ Class extrude2DMesh Declaration
\*---------------------------------------------------------------------------*/
class extrude2DMesh
@@ -66,19 +65,24 @@ class extrude2DMesh
//- Reference to 2D mesh
polyMesh& mesh_;
+ //- Extrusion dictionary
const dictionary dict_;
//const dictionary patchDict_;
+ //- The extrusion model
const extrudeModel& model_;
- const word modelType_;
-
+ //- Type of the patches that will be created by the extrusion.
const word patchType_;
+ //- Patch ID of the front patch
label frontPatchI_;
+
+ //- Patch ID of the back patch
label backPatchI_;
+
// Private Member Functions
//- Check the mesh is 2D
@@ -93,6 +97,7 @@ class extrude2DMesh
//- Disallow default bitwise assignment
void operator=(const extrude2DMesh&);
+
public:
//- Runtime type information
@@ -100,6 +105,8 @@ public:
// Constructors
+
+ //- Construct from a 2D polyMesh, a dictionary and an extrusion model
extrude2DMesh
(
polyMesh&,
@@ -114,30 +121,36 @@ public:
// Member Functions
- //- Add front and back patches
- void addFrontBackPatches();
+ // Access
+
+ //- Return the patch ID of the front patch
+ inline label frontPatchI() const
+ {
+ return frontPatchI_;
+ }
+
+ //- Return the patch ID of the back patch
+ inline label backPatchI() const
+ {
+ return backPatchI_;
+ }
- //- Play commands into polyTopoChange to extrude mesh.
- void setRefinement(polyTopoChange&);
- //- Force recalculation of locally stored data on topological change
- void updateMesh(const mapPolyMesh&)
- {}
+ // Edit
- //- Force recalculation of locally stored data for mesh distribution
- void distribute(const mapDistributePolyMesh&)
- {}
+ //- Add front and back patches
+ void addFrontBackPatches();
- label frontPatchI() const
- {
- return frontPatchI_;
- }
+ //- Play commands into polyTopoChange to extrude mesh.
+ void setRefinement(polyTopoChange&);
- label backPatchI() const
- {
- return backPatchI_;
- }
+ //- Force recalculation of locally stored data on topological change
+ void updateMesh(const mapPolyMesh&)
+ {}
+ //- Force recalculation of locally stored data for mesh distribution
+ void distribute(const mapDistributePolyMesh&)
+ {}
};
diff --git a/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMeshDict b/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMeshDict
index 5e53c29c886fa05b2158b0d032d85b5f6ed148b7..fa1b37b304968eb9c86fa12ae33ce6253e638e61 100644
--- a/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMeshDict
+++ b/applications/utilities/mesh/generation/extrude2DMesh/extrude2DMeshDict
@@ -5,42 +5,48 @@
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
-
FoamFile
{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object extrude2DMeshDict;
+ version 2.0;
+ format ascii;
+ class dictionary;
+ object extrude2DMeshDict;
}
-
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Type of extrusion
extrudeModel linearDirection;
//extrudeModel wedge;
+// Patch type the extruded patches will take
patchType empty;
//patchType wedge;
+// Number of layers to extrude
nLayers 1;
+// Expansion ratio. If >1 then grows the layers
expansionRatio 1.0;
linearDirectionCoeffs
{
+ // Direction of extrusion
direction (0 0 1);
+
+ // Width of newly extruded cells
thickness 0.1;
}
wedgeCoeffs
{
- axisPt (0 0 0);
- axis (1 0 0);
- angle 10;
+ // Point the extrusion axis goes through
+ axisPt (0 0 0);
+
+ // Axis to extrude around
+ axis (1 0 0);
+
+ // Total angle of the wedge in degrees
+ angle 10;
}
+
+// ************************************************************************* //
\ No newline at end of file
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/0.org/T b/tutorials/mesh/cv2DMesh/OpenCFD/0.org/T
deleted file mode 100644
index 9a6eca29ca3969af30086bdf9e4daee75ef1799d..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/0.org/T
+++ /dev/null
@@ -1,50 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class volScalarField;
- object T;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-dimensions [0 0 0 1 0 0 0];
-
-internalField uniform 1;
-
-boundaryField
-{
- box_inlet
- {
- type fixedValue;
- value uniform 1;
- }
-
- box_outlet
- {
- type zeroGradient;
- }
-
- box_bottom
- {
- type zeroGradient;
- }
-
- box_top
- {
- type zeroGradient;
- }
-
- letters_text
- {
- type zeroGradient;
- }
-}
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/0.org/U b/tutorials/mesh/cv2DMesh/OpenCFD/0.org/U
deleted file mode 100644
index 8bfcf3d1780f8e110bb39e46e20a9ed4267a9971..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/0.org/U
+++ /dev/null
@@ -1,59 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class volVectorField;
- object U;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-dimensions [0 1 -1 0 0 0 0];
-
-internalField uniform (0 0 0);
-
-boundaryField
-{
- box_inlet
- {
- type fixedValue;
- value uniform (3 0 0);
- }
-
- box_outlet
- {
- type zeroGradient;
- }
-
- box_bottom
- {
- type supersonicFreestream;
- UInf (3 0 0);
- pInf 1;
- TInf 1;
- gamma 1.4;
- }
-
- box_top
- {
- type supersonicFreestream;
- UInf (3 0 0);
- pInf 1;
- TInf 1;
- gamma 1.4;
- }
-
- letters_text
- {
- type fixedValue;
- value uniform (0 0 0);
- }
-}
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/0.org/p b/tutorials/mesh/cv2DMesh/OpenCFD/0.org/p
deleted file mode 100644
index 634675e05c3a50c8ecf1659596a2c05af308bf98..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/0.org/p
+++ /dev/null
@@ -1,51 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class volScalarField;
- object p;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-dimensions [1 -1 -2 0 0 0 0];
-
-internalField uniform 1;
-
-boundaryField
-{
- box_inlet
- {
- type fixedValue;
- value uniform 1;
- }
-
- box_outlet
- {
- type zeroGradient;
- }
-
- box_bottom
- {
- type zeroGradient;
- }
-
- box_top
- {
- type zeroGradient;
- }
-
- letters_text
- {
- type zeroGradient;
- }
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/Allclean b/tutorials/mesh/cv2DMesh/OpenCFD/Allclean
deleted file mode 100755
index 766547e755807945df7c6713bf32c6f18576fe0f..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/Allclean
+++ /dev/null
@@ -1,15 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/CleanFunctions
-
-rm -rf constant/extendedFeatureEdgeMesh > /dev/null 2>&1
-rm -rf constant/triSurface/*.eMesh > /dev/null 2>&1
-rm -rf 0 > /dev/null 2>&1
-rm -rf MeshedSurface.obj > /dev/null 2>&1
-
-cleanCase
-
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/Allrun b/tutorials/mesh/cv2DMesh/OpenCFD/Allrun
deleted file mode 100755
index c86f5608da82f9be64ba958861c15324ed4c9c8c..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/Allrun
+++ /dev/null
@@ -1,15 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-cp system/controlDict.mesher system/controlDict
-
-runApplication surfaceFeatureExtract
-runApplication cv2DMesh -overwrite
-runApplication extrude2DMesh -overwrite polyMesh2D
-runApplication checkMesh -allGeometry -allTopology -constant -noZero
-
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/Allrun-rhoCentralFoam b/tutorials/mesh/cv2DMesh/OpenCFD/Allrun-rhoCentralFoam
deleted file mode 100755
index a87455256146301b73272509a08181cf6c7b8506..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/Allrun-rhoCentralFoam
+++ /dev/null
@@ -1,18 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-# Get the number of processors to run on from system/decomposeParDict
-nProcs=$(getNumberOfProcessors)
-
-cp system/controlDict.rhoCentralFoam system/controlDict
-cp -r 0.org 0
-
-runApplication decomposePar
-runParallel rhoCentralFoam $nProcs
-runApplication reconstructPar
-
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/constant/thermophysicalProperties b/tutorials/mesh/cv2DMesh/OpenCFD/constant/thermophysicalProperties
deleted file mode 100644
index 4f3963307118eeb9f80178bc25e7706e5661e3ef..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/constant/thermophysicalProperties
+++ /dev/null
@@ -1,43 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "constant";
- object thermophysicalProperties;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-thermoType hePsiThermo<pureMixture<const<hConst<perfectGas<specie>>,sensibleEnthalpy>>>;
-
-// Note: these are the properties for a "normalised" inviscid gas
-// for which the speed of sound is 1 m/s at a temperature of 1K
-// and gamma = 7/5
-mixture
-{
- specie
- {
- nMoles 1;
- molWeight 11640.3;
- }
- thermodynamics
- {
- Cp 2.5;
- Hf 0;
- }
- transport
- {
- mu 0;
- Pr 1;
- }
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/constant/triSurface/opencfd_box.stl b/tutorials/mesh/cv2DMesh/OpenCFD/constant/triSurface/opencfd_box.stl
deleted file mode 100644
index dd250ea5ae9e21d687a26b84003155908e6f9405..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/constant/triSurface/opencfd_box.stl
+++ /dev/null
@@ -1,96 +0,0 @@
-solid back
- facet normal 0 0 -1
- outer loop
- vertex -1.618703 -1.830978 -0.557967
- vertex 4.82342 2.27362 -0.557967
- vertex 4.82342 -1.830978 -0.557967
- endloop
- endfacet
- facet normal 0 0 -1
- outer loop
- vertex -1.618703 -1.830978 -0.557967
- vertex -1.618703 2.27362 -0.557967
- vertex 4.82342 2.27362 -0.557967
- endloop
- endfacet
-endsolid back
-solid front
- facet normal 0 0 1
- outer loop
- vertex 4.82342 2.27362 0.586404
- vertex -1.618703 -1.830978 0.586404
- vertex 4.82342 -1.830978 0.586404
- endloop
- endfacet
- facet normal 0 0 1
- outer loop
- vertex 4.82342 2.27362 0.586404
- vertex -1.618703 2.27362 0.586404
- vertex -1.618703 -1.830978 0.586404
- endloop
- endfacet
-endsolid front
-solid bottom
- facet normal -2.19049e-08 -1 2.0834e-07
- outer loop
- vertex -1.618703 -1.830978 0.586404
- vertex -1.618703 -1.830978 -0.557967
- vertex 4.82342 -1.830978 -0.557967
- endloop
- endfacet
- facet normal -1.97144e-07 -1 -6.25021e-07
- outer loop
- vertex 4.82342 -1.830978 -0.557967
- vertex 4.82342 -1.830978 0.586404
- vertex -1.618703 -1.830978 0.586404
- endloop
- endfacet
-endsolid bottom
-solid top
- facet normal 6.57148e-08 1 4.1668e-07
- outer loop
- vertex 4.82342 2.27362 0.586404
- vertex 4.82342 2.27362 -0.557967
- vertex -1.618703 2.27362 -0.557967
- endloop
- endfacet
- facet normal 8.76197e-08 1 3.1251e-07
- outer loop
- vertex -1.618703 2.27362 -0.557967
- vertex -1.618703 2.27362 0.586404
- vertex 4.82342 2.27362 0.586404
- endloop
- endfacet
-endsolid top
-solid inlet
- facet normal -1 2.54891e-07 -2.60425e-07
- outer loop
- vertex -1.618703 -1.830978 -0.557967
- vertex -1.618703 2.27362 0.586404
- vertex -1.618703 2.27362 -0.557967
- endloop
- endfacet
- facet normal -1 1.69927e-07 -1.0417e-07
- outer loop
- vertex -1.618703 -1.830978 -0.557967
- vertex -1.618703 -1.830978 0.586404
- vertex -1.618703 2.27362 0.586404
- endloop
- endfacet
-endsolid inlet
-solid outlet
- facet normal 1 0 8.33361e-07
- outer loop
- vertex 4.82342 2.27362 -0.557967
- vertex 4.82342 -1.830978 0.586404
- vertex 4.82342 -1.830978 -0.557967
- endloop
- endfacet
- facet normal 1 -6.79708e-07 -4.16681e-07
- outer loop
- vertex 4.82342 2.27362 -0.557967
- vertex 4.82342 2.27362 0.586404
- vertex 4.82342 -1.830978 0.586404
- endloop
- endfacet
-endsolid outlet
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/constant/triSurface/opencfd_text.stl b/tutorials/mesh/cv2DMesh/OpenCFD/constant/triSurface/opencfd_text.stl
deleted file mode 100644
index 0c289a16cf676609859671dc1a20b82b7f7e3195..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/constant/triSurface/opencfd_text.stl
+++ /dev/null
@@ -1,16466 +0,0 @@
-solid text
- facet normal -0.0721417 -0.997394 -0
- outer loop
- vertex 0.436903 0.696938 0.489362
- vertex 0.436903 0.696938 -0.510638
- vertex 0.458558 0.695372 -0.510638
- endloop
- endfacet
- facet normal -0.0721417 -0.997394 0
- outer loop
- vertex 0.436903 0.696938 0.489362
- vertex 0.458558 0.695372 -0.510638
- vertex 0.458558 0.695372 0.489362
- endloop
- endfacet
- facet normal -0.121287 -0.992617 -0
- outer loop
- vertex 0.458558 0.695372 0.489362
- vertex 0.458558 0.695372 -0.510638
- vertex 0.479633 0.692796 -0.510638
- endloop
- endfacet
- facet normal -0.121287 -0.992617 0
- outer loop
- vertex 0.458558 0.695372 0.489362
- vertex 0.479633 0.692796 -0.510638
- vertex 0.479633 0.692796 0.489362
- endloop
- endfacet
- facet normal -0.171015 -0.985268 -0
- outer loop
- vertex 0.479633 0.692796 0.489362
- vertex 0.479633 0.692796 -0.510638
- vertex 0.500116 0.689241 -0.510638
- endloop
- endfacet
- facet normal -0.171015 -0.985268 0
- outer loop
- vertex 0.479633 0.692796 0.489362
- vertex 0.500116 0.689241 -0.510638
- vertex 0.500116 0.689241 0.489362
- endloop
- endfacet
- facet normal -0.221101 -0.975251 -0
- outer loop
- vertex 0.500116 0.689241 0.489362
- vertex 0.500116 0.689241 -0.510638
- vertex 0.519992 0.684735 -0.510638
- endloop
- endfacet
- facet normal -0.221101 -0.975251 0
- outer loop
- vertex 0.500116 0.689241 0.489362
- vertex 0.519992 0.684735 -0.510638
- vertex 0.519992 0.684735 0.489362
- endloop
- endfacet
- facet normal -0.271312 -0.962492 -0
- outer loop
- vertex 0.519992 0.684735 0.489362
- vertex 0.519992 0.684735 -0.510638
- vertex 0.53925 0.679306 -0.510638
- endloop
- endfacet
- facet normal -0.271312 -0.962492 0
- outer loop
- vertex 0.519992 0.684735 0.489362
- vertex 0.53925 0.679306 -0.510638
- vertex 0.53925 0.679306 0.489362
- endloop
- endfacet
- facet normal -0.321405 -0.946942 -0
- outer loop
- vertex 0.53925 0.679306 0.489362
- vertex 0.53925 0.679306 -0.510638
- vertex 0.557876 0.672985 -0.510638
- endloop
- endfacet
- facet normal -0.321405 -0.946942 0
- outer loop
- vertex 0.53925 0.679306 0.489362
- vertex 0.557876 0.672985 -0.510638
- vertex 0.557876 0.672985 0.489362
- endloop
- endfacet
- facet normal -0.371124 -0.928583 -0
- outer loop
- vertex 0.557876 0.672985 0.489362
- vertex 0.557876 0.672985 -0.510638
- vertex 0.575857 0.665798 -0.510638
- endloop
- endfacet
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diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/constant/turbulenceProperties b/tutorials/mesh/cv2DMesh/OpenCFD/constant/turbulenceProperties
deleted file mode 100644
index c2c3b28a1b4e8f4a2cae55f58bd61f9b1a67b488..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/constant/turbulenceProperties
+++ /dev/null
@@ -1,21 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "constant";
- object turbulenceProperties;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-simulationType laminar;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/system/controlDict b/tutorials/mesh/cv2DMesh/OpenCFD/system/controlDict
deleted file mode 100644
index a2364b630302f7a39c53db9122470780fd607654..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/system/controlDict
+++ /dev/null
@@ -1,55 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object controlDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-application rhoCentralFoam;
-
-startFrom startTime;
-
-startTime 0;
-
-stopAt endTime;
-
-endTime 10;
-
-deltaT 0.001;
-
-writeControl adjustableRunTime;
-
-writeInterval 1;
-
-purgeWrite 0;
-
-writeFormat ascii;
-
-writePrecision 12;
-
-writeCompression off;
-
-timeFormat general;
-
-timePrecision 6;
-
-runTimeModifiable true;
-
-adjustTimeStep yes;
-
-maxCo 0.5;
-
-maxDeltaT 1;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/system/controlDict.mesher b/tutorials/mesh/cv2DMesh/OpenCFD/system/controlDict.mesher
deleted file mode 100644
index c38028778507bd88fe2d873829afabf405e0f20e..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/system/controlDict.mesher
+++ /dev/null
@@ -1,55 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object controlDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-application rhoCentralFoam;
-
-startFrom startTime;
-
-startTime 0;
-
-stopAt endTime;
-
-endTime 100;
-
-deltaT 1;
-
-writeControl adjustableRunTime;
-
-writeInterval 1;
-
-purgeWrite 0;
-
-writeFormat ascii;
-
-writePrecision 12;
-
-writeCompression off;
-
-timeFormat general;
-
-timePrecision 6;
-
-runTimeModifiable true;
-
-adjustTimeStep yes;
-
-maxCo 0.2;
-
-maxDeltaT 1;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/system/controlDict.rhoCentralFoam b/tutorials/mesh/cv2DMesh/OpenCFD/system/controlDict.rhoCentralFoam
deleted file mode 100644
index a2364b630302f7a39c53db9122470780fd607654..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/system/controlDict.rhoCentralFoam
+++ /dev/null
@@ -1,55 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object controlDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-application rhoCentralFoam;
-
-startFrom startTime;
-
-startTime 0;
-
-stopAt endTime;
-
-endTime 10;
-
-deltaT 0.001;
-
-writeControl adjustableRunTime;
-
-writeInterval 1;
-
-purgeWrite 0;
-
-writeFormat ascii;
-
-writePrecision 12;
-
-writeCompression off;
-
-timeFormat general;
-
-timePrecision 6;
-
-runTimeModifiable true;
-
-adjustTimeStep yes;
-
-maxCo 0.5;
-
-maxDeltaT 1;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/system/cv2DMeshDict b/tutorials/mesh/cv2DMesh/OpenCFD/system/cv2DMeshDict
deleted file mode 100644
index c90cb88c278c136fff9aa9a3cb063e60a3c26378..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/system/cv2DMeshDict
+++ /dev/null
@@ -1,158 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object cv2DMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-geometry
-{
- opencfd_text.stl
- {
- name letters;
- type closedTriSurfaceMesh;
- }
-
- opencfd_box.stl
- {
- name box;
- type closedTriSurfaceMesh;
- }
-}
-
-
-surfaceConformation
-{
- // The z-coordinate of the plane is taken from here.
- locationInMesh (0 0 0);
-
- pointPairDistanceCoeff 0.1;
-
- minEdgeLenCoeff 0.1;
-
- maxNotchLenCoeff 1.0;
-
- minNearPointDistCoeff 0.1;
-
- maxQuadAngle 120;
-
- // Insert near-boundary point mirror or point-pairs
- insertSurfaceNearestPointPairs yes;
-
- // Mirror near-boundary points rather than insert point-pairs
- mirrorPoints no;
-
- // Insert point-pairs vor dual-cell vertices very near the surface
- insertSurfaceNearPointPairs yes;
-
- // Maximum number of iterations used in boundaryConform.
- maxBoundaryConformingIter 5;
-
- geometryToConformTo
- {
- letters
- {
- featureMethod extendedFeatureEdgeMesh;
- extendedFeatureEdgeMesh "opencfd_text.extendedFeatureEdgeMesh";
- }
-
- box
- {
- featureMethod extendedFeatureEdgeMesh;
- extendedFeatureEdgeMesh "opencfd_box.extendedFeatureEdgeMesh";
- }
- }
-
- additionalFeatures
- {}
-
- // Choose if to randomise the initial grid created by insertGrid.
- randomiseInitialGrid yes;
-
- // Perturbation fraction, 1 = cell-size.
- randomPerturbation 0.1;
-}
-
-
-motionControl
-{
- // This is a tolerance for determining whether to deal with surface
- // protrusions or not.
- minCellSize 0.02;
-
- // Assign a priority to all requests for cell sizes, the highest overrules.
- defaultPriority 0;
-
- shapeControlFunctions
- {
- letters
- {
- type searchableSurfaceControl;
- priority 1;
- mode bothSides;
- cellSizeFunction uniform;
-
- linearDistanceCoeffs
- {
- distanceCellSize $minCellSize;
- distance 1;
- }
- uniformCoeffs
- {}
-
- surfaceCellSizeFunction uniformValue;
- uniformValueCoeffs
- {
- surfaceCellSize $minCellSize;
- }
- }
- }
-
- relaxationModel adaptiveLinear;
-
- adaptiveLinearCoeffs
- {
- relaxationStart 0.5;
- relaxationEnd 0.0;
- }
-
- objOutput no;
-
- meshedSurfaceOutput yes;
-
- // Near-wall region where cells are aligned with the wall specified as a
- // number of cell layers
- nearWallAlignedDist 3;
-}
-
-
-shortEdgeFilter
-{
- // Factor to multiply the average of a face's edge lengths by.
- // If an edge of that face is smaller than that value then delete it.
- shortEdgeFilterFactor 0.2;
-
- // Weighting for the lengths of edges that are attached to the boundaries.
- // Used when calculating the length of an edge. Default 2.0.
- edgeAttachedToBoundaryFactor 2.0;
-}
-
-
-extrusion
-{
- extrude off;
-
- #include "extrude2DMeshDict"
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/system/decomposeParDict b/tutorials/mesh/cv2DMesh/OpenCFD/system/decomposeParDict
deleted file mode 100644
index 791022fa1f6732089cf56731b1771376b52eb5c4..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/system/decomposeParDict
+++ /dev/null
@@ -1,45 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object decomposeParDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-numberOfSubdomains 8;
-
-method hierarchical;
-
-simpleCoeffs
-{
- n ( 2 2 1 );
- delta 0.001;
-}
-
-hierarchicalCoeffs
-{
- n ( 2 2 2 );
- delta 0.001;
- order xyz;
-}
-
-manualCoeffs
-{
- dataFile "";
-}
-
-distributed no;
-
-roots ( );
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/system/extrude2DMeshDict b/tutorials/mesh/cv2DMesh/OpenCFD/system/extrude2DMeshDict
deleted file mode 100644
index b825f1608b358adf65d9bcdf3a1ed23ed5cb0b3b..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/system/extrude2DMeshDict
+++ /dev/null
@@ -1,42 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object extrude2DMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-extrudeModel linearDirection;
-
-patchInfo
-{}
-
-patchType empty;
-
-nLayers 1;
-
-expansionRatio 1.0;
-
-linearDirectionCoeffs
-{
- direction (0 0 1);
- thickness 0.1;
-}
-
-wedgeCoeffs
-{
- axisPt (0 0 0);
- axis (1 0 0);
- angle 10;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/system/fvSchemes b/tutorials/mesh/cv2DMesh/OpenCFD/system/fvSchemes
deleted file mode 100644
index 067f035d2675eb2f4cbb6b15d2e6ad341c0de416..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/system/fvSchemes
+++ /dev/null
@@ -1,61 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSchemes;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-//fluxScheme Kurganov;
-fluxScheme Tadmor;
-
-ddtSchemes
-{
- default Euler;
-}
-
-gradSchemes
-{
- default Gauss linear;
-}
-
-divSchemes
-{
- default none;
- div(tauMC) Gauss linear;
-}
-
-laplacianSchemes
-{
- default Gauss linear corrected;
-}
-
-interpolationSchemes
-{
- default linear;
- reconstruct(rho) vanLeer;
- reconstruct(U) vanLeerV;
- reconstruct(T) vanLeer;
-}
-
-snGradSchemes
-{
- default corrected;
-}
-
-fluxRequired
-{
- default no;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/system/fvSolution b/tutorials/mesh/cv2DMesh/OpenCFD/system/fvSolution
deleted file mode 100644
index bdde37d65cc33bee0ce9ca353df523a26031616e..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/system/fvSolution
+++ /dev/null
@@ -1,42 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSolution;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-solvers
-{
- "(rho|rhoU|rhoE)"
- {
- solver diagonal;
- }
-
- U
- {
- solver smoothSolver;
- smoother GaussSeidel;
- nSweeps 2;
- tolerance 1e-09;
- relTol 0.01;
- }
-
- h
- {
- $U;
- tolerance 1e-10;
- relTol 0;
- }
-}
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/OpenCFD/system/surfaceFeatureExtractDict b/tutorials/mesh/cv2DMesh/OpenCFD/system/surfaceFeatureExtractDict
deleted file mode 100644
index d82c88dd2bb3dceefc333613badedda45c8dd8fc..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/OpenCFD/system/surfaceFeatureExtractDict
+++ /dev/null
@@ -1,87 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object surfaceFeatureExtractDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-opencfd_text.stl
-{
- extractionMethod extractFromSurface;
-
- extractFromSurfaceCoeffs
- {
- // Mark edges whose adjacent surface normals are at an angle less
- // than includedAngle as features
- // - 0 : selects no edges
- // - 180: selects all edges
- includedAngle 120;
- }
-
- subsetFeatures
- {
- // Use a plane to select feature edges
- // (normal)(basePoint)
- // Keep only edges that intersect the plane will be included
- plane (0 0 1)(0 0 0);
-
- // Keep nonManifold edges (edges with >2 connected faces where
- // the faces form more than two different normal planes)
- nonManifoldEdges no;
-
- // Keep open edges (edges with 1 connected face)
- openEdges no;
- }
-
- // Write options
-
- // Write features to obj format for postprocessing
- writeObj no;
-}
-
-
-opencfd_box.stl
-{
- extractionMethod extractFromSurface;
-
- extractFromSurfaceCoeffs
- {
- // Mark edges whose adjacent surface normals are at an angle less
- // than includedAngle as features
- // - 0 : selects no edges
- // - 180: selects all edges
- includedAngle 120;
- }
-
- subsetFeatures
- {
- // Use a plane to select feature edges
- // (normal)(basePoint)
- // Keep only edges that intersect the plane will be included
- plane (0 0 1)(0 0 0);
-
- // Keep nonManifold edges (edges with >2 connected faces where
- // the faces form more than two different normal planes)
- nonManifoldEdges no;
-
- // Keep open edges (edges with 1 connected face)
- openEdges no;
- }
-
- // Write options
-
- // Write features to obj format for postprocessing
- writeObj no;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/jaggedBoundary/Allclean b/tutorials/mesh/cv2DMesh/jaggedBoundary/Allclean
deleted file mode 100755
index 4f25de0e51ddfbf94201cce54bedbab23b2514ec..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/jaggedBoundary/Allclean
+++ /dev/null
@@ -1,16 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/CleanFunctions
-
-rm -rf constant/extendedFeatureEdgeMesh > /dev/null 2>&1
-rm -rf constant/triSurface/jaggedBoundary.eMesh > /dev/null 2>&1
-rm -rf constant/polyMesh > /dev/null 2>&1
-
-rm -rf MeshedSurface.obj > /dev/null 2>&1
-
-cleanCase
-
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cv2DMesh/jaggedBoundary/Allrun b/tutorials/mesh/cv2DMesh/jaggedBoundary/Allrun
deleted file mode 100755
index cda5a63e282cfb2fa94f6fb4d3685be0c06a4db5..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/jaggedBoundary/Allrun
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-runApplication surfaceFeatureExtract
-runApplication cv2DMesh -overwrite
-runApplication extrude2DMesh -overwrite MeshedSurface
-runApplication checkMesh -allGeometry -allTopology -constant -noZero
-
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cv2DMesh/jaggedBoundary/constant/triSurface/jaggedBoundary.stl b/tutorials/mesh/cv2DMesh/jaggedBoundary/constant/triSurface/jaggedBoundary.stl
deleted file mode 100644
index ff4c993d3502f68da01a6c5cbd3713a580acf2b3..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/jaggedBoundary/constant/triSurface/jaggedBoundary.stl
+++ /dev/null
@@ -1,954 +0,0 @@
-solid jagged
- facet normal 0.468764725245 0.883323062286 -0
- outer loop
- vertex 0.0385189987719 -0.0289657991379 -1.5
- vertex -0.0187957007438 0.00145015004091 1.5
- vertex 0.0385189987719 -0.0289657991379 1.5
- endloop
- endfacet
- facet normal 0.647754318236 0.761849291662 -0
- outer loop
- vertex -0.0682383030653 0.0434882007539 -1.5
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- facet normal 0.796376571447 0.604801088334 -0
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- facet normal 0.976665530864 0.214766014121 -0
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- facet normal 1 0 -0
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- facet normal 0.976666240056 -0.214762788992 0
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- vertex -0.899999976158 -0.10000000149 1.5
- endloop
- endfacet
- facet normal 0.707106702161 -0.707106860212 0
- outer loop
- vertex -1.10000002384 0 1.5
- vertex -1.10000002384 0 -1.5
- vertex -0.899999976158 0.20000000298 -1.5
- endloop
- endfacet
- facet normal 0.707106702161 -0.707106860212 0
- outer loop
- vertex -1.10000002384 0 1.5
- vertex -0.899999976158 0.20000000298 -1.5
- vertex -0.899999976158 0.20000000298 1.5
- endloop
- endfacet
-endsolid jagged
diff --git a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/controlDict b/tutorials/mesh/cv2DMesh/jaggedBoundary/system/controlDict
deleted file mode 100644
index 97f40d27531af3a6c5c595a81aa9ef2e096d932b..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/controlDict
+++ /dev/null
@@ -1,47 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object controlDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-startFrom startTime;
-
-startTime 0;
-
-stopAt endTime;
-
-endTime 100;
-
-deltaT 1;
-
-writeControl timeStep;
-
-writeInterval 1;
-
-purgeWrite 0;
-
-writeFormat ascii;
-
-writePrecision 12;
-
-writeCompression off;
-
-timeFormat general;
-
-timePrecision 6;
-
-runTimeModifiable true;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/cv2DMeshDict b/tutorials/mesh/cv2DMesh/jaggedBoundary/system/cv2DMeshDict
deleted file mode 100644
index 76d790c4c22db911749d7bcd2441937e2ffde24c..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/cv2DMeshDict
+++ /dev/null
@@ -1,147 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object cv2DMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-geometry
-{
- jaggedBoundary.stl
- {
- name jaggedBoundary;
- type closedTriSurfaceMesh;
- }
-}
-
-surfaceConformation
-{
- // The z-coordinate of the plane is taken from here.
- locationInMesh (-0.6 0.3 0.0);
-
- pointPairDistanceCoeff 0.001;
-
- // If area of a dual cell is less than the square of this, do not refine.
- minEdgeLenCoeff 0.001;
-
- // How much cells are allowed to stick out of the surfaces before
- // points are inserted onto the boundary
- maxNotchLenCoeff 1;
-
- minNearPointDistCoeff 0.001;
-
- maxQuadAngle 125;
-
- // Insert near-boundary point mirror or point-pairs
- insertSurfaceNearestPointPairs yes;
-
- // Mirror near-boundary points rather than insert point-pairs
- mirrorPoints no;
-
- // Insert point-pairs vor dual-cell vertices very near the surface
- insertSurfaceNearPointPairs yes;
-
- // Maximum number of iterations used in boundaryConform.
- maxBoundaryConformingIter 5;
-
- geometryToConformTo
- {
- jaggedBoundary
- {
- featureMethod extendedFeatureEdgeMesh;
- extendedFeatureEdgeMesh "jaggedBoundary.extendedFeatureEdgeMesh";
- }
- }
-
- additionalFeatures
- {
- }
-
- // Choose if to randomise the initial grid created by insertGrid.
- randomiseInitialGrid yes;
-
- // Perturbation fraction, 1 = cell-size.
- randomPerturbation 0.1;
-}
-
-
-motionControl
-{
- // This is a tolerance for determining whether to deal with surface
- // protrusions or not.
- minCellSize 0.04;
-
- // Assign a priority to all requests for cell sizes, the highest overrules.
- defaultPriority 0;
-
- shapeControlFunctions
- {
- jaggedBoundary
- {
- type searchableSurfaceControl;
- priority 1;
- mode inside;
-
- cellSizeFunction surfaceOffsetLinearDistance;
- surfaceOffsetLinearDistanceCoeffs
- {
- distanceCellSize $minCellSize;
- totalDistance 0.2;
- surfaceOffset 0.05;
- }
-
- surfaceCellSizeFunction uniformValue;
- uniformValueCoeffs
- {
- surfaceCellSize 0.005;
- }
- }
- }
-
- relaxationModel adaptiveLinear;
-
- adaptiveLinearCoeffs
- {
- relaxationStart 0.5;
- relaxationEnd 0.0;
- }
-
- objOutput no;
-
- meshedSurfaceOutput yes;
-
- // Near-wall region where cells are aligned with the wall specified as a
- // number of cell layers
- nearWallAlignedDist 3;
-}
-
-
-shortEdgeFilter
-{
- // Factor to multiply the average of a face's edge lengths by.
- // If an edge of that face is smaller than that value then delete it.
- shortEdgeFilterFactor 0.2;
-
- // Weighting for the lengths of edges that are attached to the boundaries.
- // Used when calculating the length of an edge. Default 2.0.
- edgeAttachedToBoundaryFactor 2.0;
-}
-
-
-extrusion
-{
- extrude off;
- #include "extrude2DMeshDict";
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/extrude2DMeshDict b/tutorials/mesh/cv2DMesh/jaggedBoundary/system/extrude2DMeshDict
deleted file mode 100644
index b825f1608b358adf65d9bcdf3a1ed23ed5cb0b3b..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/extrude2DMeshDict
+++ /dev/null
@@ -1,42 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object extrude2DMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-extrudeModel linearDirection;
-
-patchInfo
-{}
-
-patchType empty;
-
-nLayers 1;
-
-expansionRatio 1.0;
-
-linearDirectionCoeffs
-{
- direction (0 0 1);
- thickness 0.1;
-}
-
-wedgeCoeffs
-{
- axisPt (0 0 0);
- axis (1 0 0);
- angle 10;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/fvSchemes b/tutorials/mesh/cv2DMesh/jaggedBoundary/system/fvSchemes
deleted file mode 100644
index 2e5c55b28ba64ca0cfc1a7c714148109cd736563..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/fvSchemes
+++ /dev/null
@@ -1,54 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSchemes;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-ddtSchemes
-{
- default none;
-}
-
-gradSchemes
-{
- default none;
-}
-
-divSchemes
-{
- default none;
-}
-
-laplacianSchemes
-{
- default none;
-}
-
-interpolationSchemes
-{
- default none;
-}
-
-snGradSchemes
-{
- default none;
-}
-
-fluxRequired
-{
- default no;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/fvSolution b/tutorials/mesh/cv2DMesh/jaggedBoundary/system/fvSolution
deleted file mode 100644
index 8ce8c60878cf19b4d62a2c8cc71c3b465f3829ce..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/fvSolution
+++ /dev/null
@@ -1,22 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSolution;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-solvers
-{}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/surfaceFeatureExtractDict b/tutorials/mesh/cv2DMesh/jaggedBoundary/system/surfaceFeatureExtractDict
deleted file mode 100644
index 7ff6c35a0b093a2cd0a15ddbea69ee27a8f25fd6..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/jaggedBoundary/system/surfaceFeatureExtractDict
+++ /dev/null
@@ -1,52 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object surfaceFeatureExtractDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-jaggedBoundary.stl
-{
- extractionMethod extractFromSurface;
-
- extractFromSurfaceCoeffs
- {
- // Mark edges whose adjacent surface normals are at an angle less
- // than includedAngle as features
- // - 0 : selects no edges
- // - 180: selects all edges
- includedAngle 175;
- }
-
- subsetFeatures
- {
- // Use a plane to select feature edges
- // (normal)(basePoint)
- // Keep only edges that intersect the plane will be included
- plane (0 0 1)(-0.6 0.3 0.0);
-
- // Keep nonManifold edges (edges with >2 connected faces where
- // the faces form more than two different normal planes)
- nonManifoldEdges no;
-
- // Keep open edges (edges with 1 connected face)
- openEdges no;
- }
-
- // Write options
-
- // Write features to obj format for postprocessing
- writeObj no;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/square/Allclean b/tutorials/mesh/cv2DMesh/square/Allclean
deleted file mode 100755
index f30f73d875c750ccf27f825b52486c7c4ed4ae17..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/square/Allclean
+++ /dev/null
@@ -1,16 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/CleanFunctions
-
-rm -rf constant/extendedFeatureEdgeMesh > /dev/null 2>&1
-rm -rf constant/triSurface/unit_cube.eMesh > /dev/null 2>&1
-rm -rf constant/polyMesh > /dev/null 2>&1
-
-rm -rf MeshedSurface*.obj > /dev/null 2>&1
-
-cleanCase
-
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cv2DMesh/square/Allrun b/tutorials/mesh/cv2DMesh/square/Allrun
deleted file mode 100755
index 469561f159d2c1fcda71722e6ddbe3b80e5cf274..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/square/Allrun
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-runApplication surfaceFeatureExtract
-runApplication cv2DMesh -overwrite
-runApplication extrude2DMesh -overwrite polyMesh2D
-runApplication checkMesh -allGeometry -allTopology -constant -noZero
-
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cv2DMesh/square/constant/triSurface/unit_cube.stl b/tutorials/mesh/cv2DMesh/square/constant/triSurface/unit_cube.stl
deleted file mode 100644
index 4b213c284df4991591dac5e75a57e081817d7d39..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/square/constant/triSurface/unit_cube.stl
+++ /dev/null
@@ -1,88 +0,0 @@
-solid inlet
- facet normal 1 0 0
- outer loop
- vertex 1 1 0.5
- vertex 1 0 0.5
- vertex 1 0 -0.5
- endloop
- endfacet
- facet normal 1 0 -0
- outer loop
- vertex 1 1 -0.5
- vertex 1 1 0.5
- vertex 1 0 -0.5
- endloop
- endfacet
-endsolid inlet
-solid cube.tri
- facet normal -1 0 0
- outer loop
- vertex 0 0 -0.5
- vertex 0 0 0.5
- vertex 0 1 0.5
- endloop
- endfacet
- facet normal -1 0 0
- outer loop
- vertex 0 1 -0.5
- vertex 0 0 -0.5
- vertex 0 1 0.5
- endloop
- endfacet
- facet normal 0 1 0
- outer loop
- vertex 1 1 0.5
- vertex 1 1 -0.5
- vertex 0 1 -0.5
- endloop
- endfacet
- facet normal -0 1 0
- outer loop
- vertex 0 1 0.5
- vertex 1 1 0.5
- vertex 0 1 -0.5
- endloop
- endfacet
- facet normal 0 -1 0
- outer loop
- vertex 0 0 -0.5
- vertex 1 0 -0.5
- vertex 1 0 0.5
- endloop
- endfacet
- facet normal 0 -1 0
- outer loop
- vertex 0 0 0.5
- vertex 0 0 -0.5
- vertex 1 0 0.5
- endloop
- endfacet
- facet normal 0 0 1
- outer loop
- vertex 1 1 0.5
- vertex 0 1 0.5
- vertex 0 0 0.5
- endloop
- endfacet
- facet normal 0 -0 1
- outer loop
- vertex 1 0 0.5
- vertex 1 1 0.5
- vertex 0 0 0.5
- endloop
- endfacet
- facet normal 0 0 -1
- outer loop
- vertex 0 0 -0.5
- vertex 0 1 -0.5
- vertex 1 1 -0.5
- endloop
- endfacet
- facet normal 0 0 -1
- outer loop
- vertex 1 0 -0.5
- vertex 0 0 -0.5
- vertex 1 1 -0.5
- endloop
- endfacet
-endsolid cube.tri
diff --git a/tutorials/mesh/cv2DMesh/square/system/controlDict b/tutorials/mesh/cv2DMesh/square/system/controlDict
deleted file mode 100644
index ccd8cd716ac1fb207115871ecfeeecabb71848fc..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/square/system/controlDict
+++ /dev/null
@@ -1,52 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object controlDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-startFrom startTime;
-
-startTime 0;
-
-stopAt endTime;
-
-endTime 100;
-
-deltaT 1;
-
-writeControl timeStep;
-
-writeInterval 1;
-
-purgeWrite 0;
-
-writeFormat ascii;
-
-writePrecision 12;
-
-writeCompression off;
-
-timeFormat general;
-
-timePrecision 6;
-
-runTimeModifiable true;
-
-DebugSwitches
-{
- shortEdgeFilter2D 0;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/square/system/cv2DMeshDict b/tutorials/mesh/cv2DMesh/square/system/cv2DMeshDict
deleted file mode 100644
index 160a2e7518662153808e1da1d5417d43fb7f2c92..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/square/system/cv2DMeshDict
+++ /dev/null
@@ -1,165 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object DMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-geometry
-{
- unit_cube.stl
- {
- name cube;
- type triSurfaceMesh;
- }
-
- refinementBox
- {
- type searchableBox;
- min (0.25 0.25 -1000);
- max (0.75 0.75 1000);
- }
-}
-
-
-surfaceConformation
-{
- // The z-coordinate of the plane is taken from here.
- locationInMesh (0 0 0);
-
- pointPairDistanceCoeff 0.005;
-
- minEdgeLenCoeff 0.005;
-
- maxNotchLenCoeff 0.003;
-
- minNearPointDistCoeff 0.0025;
-
- maxQuadAngle 125;
-
- // Insert near-boundary point mirror or point-pairs
- insertSurfaceNearestPointPairs yes;
-
- // Mirror near-boundary points rather than insert point-pairs
- mirrorPoints no;
-
- // Insert point-pairs vor dual-cell vertices very near the surface
- insertSurfaceNearPointPairs yes;
-
- // Maximum number of iterations used in boundaryConform.
- maxBoundaryConformingIter 5;
-
- geometryToConformTo
- {
- cube
- {
- featureMethod extendedFeatureEdgeMesh;
- extendedFeatureEdgeMesh "unit_cube.extendedFeatureEdgeMesh";
- }
- }
-
- additionalFeatures
- {}
-
- // Choose if to randomise the initial grid created by insertGrid.
- randomiseInitialGrid yes;
-
- // Perturbation fraction, 1 = cell-size.
- randomPerturbation 0.1;
-}
-
-
-motionControl
-{
- minCellSize 0.04;
-
- // Assign a priority to all requests for cell sizes, the highest overrules.
- defaultPriority 0;
-
- shapeControlFunctions
- {
- cube
- {
- type searchableSurfaceControl;
- priority 1;
- mode bothSides;
- cellSizeFunction linearDistance;
- linearDistanceCoeffs
- {
- distanceCellSize $minCellSize;
- distance #calc"5*$minCellSize";
- }
- surfaceCellSizeFunction uniformValue;
- uniformValueCoeffs
- {
- surfaceCellSize #calc"0.05*$minCellSize";
- }
- }
-
- refinementBox
- {
- type searchableSurfaceControl;
- priority 1;
- mode bothSides;
- cellSizeFunction linearDistance;
- linearDistanceCoeffs
- {
- distanceCellSize $minCellSize;
- distance #calc"5*$minCellSize";
- }
- surfaceCellSizeFunction uniformValue;
- uniformValueCoeffs
- {
- surfaceCellSize #calc"0.05*$minCellSize";
- }
- }
- }
-
- relaxationModel adaptiveLinear;
-
- adaptiveLinearCoeffs
- {
- relaxationStart 0.5;
- relaxationEnd 0.0;
- }
-
- objOutput no;
-
- meshedSurfaceOutput yes;
-
- // Near-wall region where cells are aligned with the wall specified as a
- // number of cell layers
- nearWallAlignedDist 3;
-}
-
-
-shortEdgeFilter
-{
- // Factor to multiply the average of a face's edge lengths by.
- // If an edge of that face is smaller than that value then delete it.
- shortEdgeFilterFactor 0.25;
-
- // Weighting for the lengths of edges that are attached to the boundaries.
- // Used when calculating the length of an edge. Default 2.0.
- edgeAttachedToBoundaryFactor 2.0;
-}
-
-
-extrusion
-{
- extrude off;
-
- #include "extrude2DMeshDict";
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/square/system/extrude2DMeshDict b/tutorials/mesh/cv2DMesh/square/system/extrude2DMeshDict
deleted file mode 100644
index b7116172e31faf4704909c60b88f4d0cd8217a3f..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/square/system/extrude2DMeshDict
+++ /dev/null
@@ -1,42 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object extrude2DMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-extrudeModel wedge;
-
-patchInfo
-{}
-
-patchType wedge;
-
-nLayers 1;
-
-expansionRatio 1.0;
-
-linearDirectionCoeffs
-{
- direction (0 0 1);
- thickness 0.1;
-}
-
-wedgeCoeffs
-{
- axisPt (0 0 0);
- axis (1 0 0);
- angle 10;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/square/system/fvSchemes b/tutorials/mesh/cv2DMesh/square/system/fvSchemes
deleted file mode 100644
index 2e5c55b28ba64ca0cfc1a7c714148109cd736563..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/square/system/fvSchemes
+++ /dev/null
@@ -1,54 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSchemes;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-ddtSchemes
-{
- default none;
-}
-
-gradSchemes
-{
- default none;
-}
-
-divSchemes
-{
- default none;
-}
-
-laplacianSchemes
-{
- default none;
-}
-
-interpolationSchemes
-{
- default none;
-}
-
-snGradSchemes
-{
- default none;
-}
-
-fluxRequired
-{
- default no;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/square/system/fvSolution b/tutorials/mesh/cv2DMesh/square/system/fvSolution
deleted file mode 100644
index 8ce8c60878cf19b4d62a2c8cc71c3b465f3829ce..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/square/system/fvSolution
+++ /dev/null
@@ -1,22 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSolution;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-solvers
-{}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cv2DMesh/square/system/surfaceFeatureExtractDict b/tutorials/mesh/cv2DMesh/square/system/surfaceFeatureExtractDict
deleted file mode 100644
index 6a2e6d3ffeb6709c39d112c2956869f000c526be..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cv2DMesh/square/system/surfaceFeatureExtractDict
+++ /dev/null
@@ -1,52 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object surfaceFeatureExtractDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-unit_cube.stl
-{
- extractionMethod extractFromSurface;
-
- extractFromSurfaceCoeffs
- {
- // Mark edges whose adjacent surface normals are at an angle less
- // than includedAngle as features
- // - 0 : selects no edges
- // - 180: selects all edges
- includedAngle 175;
- }
-
- subsetFeatures
- {
- // Use a plane to select feature edges
- // (normal)(basePoint)
- // Keep only edges that intersect the plane will be included
- plane (0 0 1)(0 0 0);
-
- // Keep nonManifold edges (edges with >2 connected faces where
- // the faces form more than two different normal planes)
- nonManifoldEdges no;
-
- // Keep open edges (edges with 1 connected face)
- openEdges yes;
- }
-
- // Write options
-
- // Write features to obj format for postprocessing
- writeObj yes;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/Allclean b/tutorials/mesh/cvMesh/blob/Allclean
deleted file mode 100755
index 3b8eb25810039817af3290c78cec672d91be429c..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/Allclean
+++ /dev/null
@@ -1,14 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/CleanFunctions
-
-cleanCase
-
-rm -rf constant/cellAlignments > /dev/null 2>&1
-rm -rf constant/targetCellSize > /dev/null 2>&1
-rm -rf constant/internalDelaunayVertices > /dev/null 2>&1
-
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/blob/Allrun b/tutorials/mesh/cvMesh/blob/Allrun
deleted file mode 100755
index ab12a6cbd5e5cd43785ffae0f8d8e1c4e2019ebf..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/Allrun
+++ /dev/null
@@ -1,11 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-runApplication cvMesh
-runApplication collapseEdges -latestTime -collapseFaces
-runApplication checkMesh -latestTime -allGeometry -allTopology
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/blob/Allrun-parallel b/tutorials/mesh/cvMesh/blob/Allrun-parallel
deleted file mode 100755
index 253294de1f153f5933dac13f3c4559a366225cf1..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/Allrun-parallel
+++ /dev/null
@@ -1,19 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-# Get the number of processors to run on from system/decomposeParDict
-nProc=$(getNumberOfProcessors)
-
-runApplication blockMesh
-runApplication decomposePar
-
-runParallel cvMesh $nProc
-runParallel collapseEdges $nProc -latestTime -collapseFaces
-runParallel checkMesh $nProc -latestTime -allTopology -allGeometry
-
-runApplication reconstructParMesh -latestTime
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/blob/Alltest b/tutorials/mesh/cvMesh/blob/Alltest
deleted file mode 100755
index fc9136aea51b1f0ea208ef462afc59dbbb9b3693..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/Alltest
+++ /dev/null
@@ -1,18 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-runApplication cvMesh
-
-# Change collapseEdges to only do one iteration
-cp system/collapseDict system/collapseDict.org
-
-sed -e s/"\(maximumIterations[ \t]*\)\([0-9]*\);"/"\1 1;"/g \
-system/collapseDict.org > system/collapseDict
-
-runApplication collapseEdges -latestTime -collapseFaces
-
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/blob/constant/polyMesh/blockMeshDict b/tutorials/mesh/cvMesh/blob/constant/polyMesh/blockMeshDict
deleted file mode 100644
index a0d9e31895cd3db25759d74fdaefc8c16eb5a4bf..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/constant/polyMesh/blockMeshDict
+++ /dev/null
@@ -1,69 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object blockMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-convertToMeters 1.0;
-
-xmin -1.3;
-xmax 0.65;
-ymin -1.1;
-ymax 0.8;
-zmin -1.4;
-zmax 0.55;
-
-vertices
-(
- ($xmin $ymin $zmin)
- ($xmax $ymin $zmin)
- ($xmax $ymax $zmin)
- ($xmin $ymax $zmin)
- ($xmin $ymin $zmax)
- ($xmax $ymin $zmax)
- ($xmax $ymax $zmax)
- ($xmin $ymax $zmax)
-
-);
-
-blocks
-(
- hex (0 1 2 3 4 5 6 7) (11 11 9) simpleGrading (1 1 1)
-);
-
-edges
-(
-);
-
-boundary
-(
- walls
- {
- type wall;
- faces
- (
- (3 7 6 2)
- (0 4 7 3)
- (2 6 5 1)
- (1 5 4 0)
- (0 3 2 1)
- (4 5 6 7)
- );
- }
-);
-
-mergePatchPairs
-(
-);
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/constant/polyMesh/boundary b/tutorials/mesh/cvMesh/blob/constant/polyMesh/boundary
deleted file mode 100644
index 69a2a888d4cbc8ceaaf582487e5027df213da58a..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/constant/polyMesh/boundary
+++ /dev/null
@@ -1,28 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class polyBoundaryMesh;
- location "constant/polyMesh";
- object boundary;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-1
-(
- walls
- {
- type wall;
- nFaces 638;
- startFace 2948;
- }
-)
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/constant/triSurface/blob.stl b/tutorials/mesh/cvMesh/blob/constant/triSurface/blob.stl
deleted file mode 100644
index 2aa427a4f186e2b8b45a854f4a4b7776f93083ca..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/constant/triSurface/blob.stl
+++ /dev/null
@@ -1,21506 +0,0 @@
-solid patch1
- facet normal 0.0423597 0.0421465 -0.998213
- outer loop
- vertex -0.327179 -0.153076 -1.35078
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- endfacet
- facet normal -0.661176 0.749936 -0.0210368
- outer loop
- vertex -0.921915 0.564782 -0.12303
- vertex -0.98901 0.508756 -0.0115394
- vertex -0.923782 0.566271 -0.0112786
- endloop
- endfacet
- facet normal -0.661359 0.750004 0.00987881
- outer loop
- vertex -0.923782 0.566271 -0.0112786
- vertex -0.98901 0.508756 -0.0115394
- vertex -0.988237 0.507983 0.0988907
- endloop
- endfacet
- facet normal -0.661089 0.750238 0.0101605
- outer loop
- vertex -0.923782 0.566271 -0.0112786
- vertex -0.988237 0.507983 0.0988907
- vertex -0.923665 0.564873 0.0995073
- endloop
- endfacet
- facet normal -0.660314 0.748855 0.0565847
- outer loop
- vertex -0.923665 0.564873 0.0995073
- vertex -0.988237 0.507983 0.0988907
- vertex -0.984236 0.503981 0.198536
- endloop
- endfacet
- facet normal -0.658724 0.75012 0.0583349
- outer loop
- vertex -0.923665 0.564873 0.0995073
- vertex -0.984236 0.503981 0.198536
- vertex -0.92233 0.558168 0.20081
- endloop
- endfacet
- facet normal -0.65496 0.742338 0.141285
- outer loop
- vertex -0.92233 0.558168 0.20081
- vertex -0.984236 0.503981 0.198536
- vertex -0.976233 0.495979 0.277683
- endloop
- endfacet
- facet normal -0.653714 0.743144 0.142811
- outer loop
- vertex -0.92233 0.558168 0.20081
- vertex -0.976233 0.495979 0.277683
- vertex -0.920541 0.543733 0.284113
- endloop
- endfacet
- facet normal -0.644467 0.715155 0.270584
- outer loop
- vertex -0.920541 0.543733 0.284113
- vertex -0.976233 0.495979 0.277683
- vertex -0.966663 0.486408 0.325773
- endloop
- endfacet
- facet normal -0.647131 0.714299 0.266456
- outer loop
- vertex -0.920541 0.543733 0.284113
- vertex -0.966663 0.486408 0.325773
- vertex -0.926049 0.515237 0.347126
- endloop
- endfacet
-endsolid patch1
diff --git a/tutorials/mesh/cvMesh/blob/system/collapseDict b/tutorials/mesh/cvMesh/blob/system/collapseDict
deleted file mode 100644
index 4948b7a61dddeec6c67cc7210ed6cbd1007d222c..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/system/collapseDict
+++ /dev/null
@@ -1,54 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object collapseDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-collapseEdgesCoeffs
-{
- minimumEdgeLength 1e-4;
- maximumMergeAngle 180;
- reductionFactor 0.5;
-}
-
-
-collapseFacesCoeffs
-{
- initialFaceLengthFactor 0.5;
- reductionFactor 0.5;
-
- allowEarlyCollapseToPoint on;
- allowEarlyCollapseCoeff 0.2;
- guardFraction 0.1;
- maxCollapseFaceToPointSideLengthCoeff 0.3;
-}
-
-
-meshQualityCoeffs
-{
- #include "meshQualityDict";
- maximumIterations 10;
- maximumSmoothingIterations 1;
- maxPointErrorCount 5;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/system/controlDict b/tutorials/mesh/cvMesh/blob/system/controlDict
deleted file mode 100644
index 56534bc1d5ad67209fb7d79524d0684cc1d0e4f6..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/system/controlDict
+++ /dev/null
@@ -1,53 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object controlDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-startFrom startTime;
-
-startTime 0;
-
-stopAt endTime;
-
-endTime 80;
-
-deltaT 1;
-
-writeControl timeStep;
-
-writeInterval 80;
-
-purgeWrite 0;
-
-writeFormat ascii;
-
-writePrecision 12;
-
-writeCompression uncompressed;
-
-timeFormat general;
-
-timePrecision 6;
-
-runTimeModifiable yes;
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/system/cvMeshDict b/tutorials/mesh/cvMesh/blob/system/cvMeshDict
deleted file mode 100644
index eda52324f55ca0fdb1431ce058ee1304f61ab4de..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/system/cvMeshDict
+++ /dev/null
@@ -1,212 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object cvMeshDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-// Any scalar with a name <name>Coeff specifies a value that will be implemented
-// as a faction of the local target cell size
-
-geometry
-{
- blob.stl
- {
- type triSurfaceMesh;
- }
-
- refinementBox
- {
- type searchableBox;
- min (-0.2 -0.6 -0.2);
- max ( 0.4 0.2 0.35);
- }
-}
-
-
-backgroundMeshDecomposition
-{
- minLevels 0;
- sampleResolution 4;
- spanScale 20;
- maxCellWeightCoeff 20;
-}
-
-
-initialPoints
-{
- minimumSurfaceDistanceCoeff 0.55;
-
- initialPointsMethod autoDensity;
- // initialPointsMethod pointFile;
-
- autoDensityCoeffs
- {
- minLevels 0;
- maxSizeRatio 5.0;
- sampleResolution 5;
- surfaceSampleResolution 5;
- }
-
- pointFileCoeffs
- {
- pointFile "constant/internalDelaunayVertices";
- }
-}
-
-
-surfaceConformation
-{
- locationInMesh (0.1 0.1 0.2);
-
- pointPairDistanceCoeff 0.1;
-
- mixedFeaturePointPPDistanceCoeff 5.0;
-
- featurePointExclusionDistanceCoeff 0.4;
-
- featureEdgeExclusionDistanceCoeff 0.2;
-
- surfaceSearchDistanceCoeff 5;
-
- nearBoundaryDistanceCoeff 5;
-
- maxSurfaceProtrusionCoeff 0.001;
-
- maxQuadAngle 125;
-
- surfaceConformationRebuildFrequency 10;
-
- specialiseFeaturePoints off;
-
- conformationControls
- {
- edgeSearchDistCoeff 5;
- surfacePtReplaceDistCoeff 0.5;
- surfacePtExclusionDistanceCoeff 0.5;
-
- maxIterations 15;
-
- iterationToInitialHitRatioLimit 0.0001;
- }
-
- geometryToConformTo
- {
- blob.stl
- {
- featureMethod none;
- }
- }
-
- additionalFeatures
- {
- }
-}
-
-
-motionControl
-{
- defaultCellSize 0.1;
-
- shapeControlFunctions
- {
- blob.stl
- {
- type searchableSurfaceControl;
- priority 1;
- mode bothSides;
-
- surfaceCellSizeFunction uniformValue;
- uniformValueCoeffs
- {
- surfaceCellSize $defaultCellSize;
- }
-
- cellSizeFunction uniform;
- uniformCoeffs
- {}
- }
- }
-
- maxRefinementIterations 1;
-
- cellAspectRatioControl
- {
- aspectRatio 1.0;
- aspectRatioDirection (1 0 0);
- }
-
- relaxationModel adaptiveLinear;
-
- adaptiveLinearCoeffs
- {
- relaxationStart 1.0;
- relaxationEnd 0.0;
- }
-
- objOutput no;
-
- timeChecks no;
-
- maxLoadUnbalance 0.5;
-
- alignmentSearchSpokes 24;
-
- alignmentAcceptanceAngle 48;
-
- sizeAndAlignmentRebuildFrequency 40;
-
- pointInsertionCriteria
- {
- cellCentreDistCoeff 1.75;
- faceAreaRatioCoeff 0.0025;
- acceptanceAngle 21.5;
- }
-
- pointRemovalCriteria
- {
- cellCentreDistCoeff 0.65;
- }
-
- faceAreaWeightModel piecewiseLinearRamp;
-
- piecewiseLinearRampCoeffs
- {
- lowerAreaFraction 0.5;
- upperAreaFraction 1.0;
- }
-}
-
-
-polyMeshFiltering
-{
- filterEdges on;
- filterFaces off;
- writeTetDualMesh false;
-}
-
-
-meshQualityControls
-{
- #include "meshQualityDict"
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/system/decomposeParDict b/tutorials/mesh/cvMesh/blob/system/decomposeParDict
deleted file mode 100644
index 3d3806e87382b1f4fef074e2aad6f535c98881b6..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/system/decomposeParDict
+++ /dev/null
@@ -1,47 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object decomposeParDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-numberOfSubdomains 2;
-
-method scotch;
-//method ptscotch;
-// method hierarchical;
-
-simpleCoeffs
-{
- n ( 2 2 1 );
- delta 0.001;
-}
-
-hierarchicalCoeffs
-{
- n ( 2 1 1 );
- delta 0.001;
- order xyz;
-}
-
-manualCoeffs
-{
- dataFile "";
-}
-
-distributed no;
-
-roots ( );
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/system/fvSchemes b/tutorials/mesh/cvMesh/blob/system/fvSchemes
deleted file mode 100644
index 2e5c55b28ba64ca0cfc1a7c714148109cd736563..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/system/fvSchemes
+++ /dev/null
@@ -1,54 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSchemes;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-ddtSchemes
-{
- default none;
-}
-
-gradSchemes
-{
- default none;
-}
-
-divSchemes
-{
- default none;
-}
-
-laplacianSchemes
-{
- default none;
-}
-
-interpolationSchemes
-{
- default none;
-}
-
-snGradSchemes
-{
- default none;
-}
-
-fluxRequired
-{
- default no;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/system/fvSolution b/tutorials/mesh/cvMesh/blob/system/fvSolution
deleted file mode 100644
index 740eb61a4bcb97e64ae0b33558f5c7057e7a6d20..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/system/fvSolution
+++ /dev/null
@@ -1,22 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSolution;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-solvers
-{
-}
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/system/meshQualityDict b/tutorials/mesh/cvMesh/blob/system/meshQualityDict
deleted file mode 100644
index fa5319e087c5e36fe7c3cd93d3a69d5ebc75463e..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/system/meshQualityDict
+++ /dev/null
@@ -1,73 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object meshQualityDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-//- Maximum non-orthogonality allowed. Set to 180 to disable.
-maxNonOrtho 65;
-
-//- Max skewness allowed. Set to <0 to disable.
-maxBoundarySkewness 50;
-maxInternalSkewness 10;
-
-//- Max concaveness allowed. Is angle (in degrees) below which concavity
-// is allowed. 0 is straight face, <0 would be convex face.
-// Set to 180 to disable.
-maxConcave 80;
-
-//- Minimum quality of the tet formed by the face-centre
-// and variable base point minimum decomposition triangles and
-// the cell centre. This has to be a positive number for tracking
-// to work. Set to very negative number (e.g. -1E30) to
-// disable.
-// <0 = inside out tet,
-// 0 = flat tet
-// 1 = regular tet
-minTetQuality 1e-30;
-
-//- Minimum pyramid volume. Is absolute volume of cell pyramid.
-// Set to a sensible fraction of the smallest cell volume expected.
-// Set to very negative number (e.g. -1E30) to disable.
-minVol 1e-20;
-
-//- Minimum face area. Set to <0 to disable.
-minArea -1;
-
-//- Minimum face twist. Set to <-1 to disable. dot product of face normal
-//- and face centre triangles normal
-minTwist 0.001;
-
-//- minimum normalised cell determinant
-//- 1 = hex, <= 0 = folded or flattened illegal cell
-minDeterminant 0.001;
-
-//- minFaceWeight (0 -> 0.5)
-minFaceWeight 0.02;
-
-//- minVolRatio (0 -> 1)
-minVolRatio 0.01;
-
-//must be >0 for Fluent compatibility
-minTriangleTwist -1;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/system/snappyHexMeshDict b/tutorials/mesh/cvMesh/blob/system/snappyHexMeshDict
deleted file mode 100644
index c5723d829f22cd893114a969605b413cdcb75b84..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/system/snappyHexMeshDict
+++ /dev/null
@@ -1,310 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object snappyHexMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-// Which of the steps to run
-castellatedMesh false;
-snap false;
-addLayers true;
-
-
-// Geometry. Definition of all surfaces. All surfaces are of class
-// searchableSurface.
-// Surfaces are used
-// - to specify refinement for any mesh cell intersecting it
-// - to specify refinement for any mesh cell inside/outside/near
-// - to 'snap' the mesh boundary to the surface
-geometry
-{
-// motorBike.obj
-// {
-// type triSurfaceMesh;
-// name motorBike;
-// }
-//
-// refinementBox
-// {
-// type searchableBox;
-// min (-1.0 -0.7 0.0);
-// max ( 8.0 0.7 2.5);
-// }
-};
-
-
-
-// Settings for the castellatedMesh generation.
-castellatedMeshControls
-{
-
- // Refinement parameters
- // ~~~~~~~~~~~~~~~~~~~~~
-
- // If local number of cells is >= maxLocalCells on any processor
- // switches from from refinement followed by balancing
- // (current method) to (weighted) balancing before refinement.
- maxLocalCells 100000;
-
- // Overall cell limit (approximately). Refinement will stop immediately
- // upon reaching this number so a refinement level might not complete.
- // Note that this is the number of cells before removing the part which
- // is not 'visible' from the keepPoint. The final number of cells might
- // actually be a lot less.
- maxGlobalCells 2000000;
-
- // The surface refinement loop might spend lots of iterations refining just a
- // few cells. This setting will cause refinement to stop if <= minimumRefine
- // are selected for refinement. Note: it will at least do one iteration
- // (unless the number of cells to refine is 0)
- minRefinementCells 10;
-
- // Allow a certain level of imbalance during refining
- // (since balancing is quite expensive)
- // Expressed as fraction of perfect balance (= overall number of cells /
- // nProcs). 0=balance always.
- maxLoadUnbalance 0.10;
-
-
- // Number of buffer layers between different levels.
- // 1 means normal 2:1 refinement restriction, larger means slower
- // refinement.
- nCellsBetweenLevels 3;
-
-
-
- // Explicit feature edge refinement
- // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- // Specifies a level for any cell intersected by its edges.
- // This is a featureEdgeMesh, read from constant/triSurface for now.
- features
- (
- //{
- // file "someLine.eMesh";
- // level 2;
- //}
- );
-
-
-
- // Surface based refinement
- // ~~~~~~~~~~~~~~~~~~~~~~~~
-
- // Specifies two levels for every surface. The first is the minimum level,
- // every cell intersecting a surface gets refined up to the minimum level.
- // The second level is the maximum level. Cells that 'see' multiple
- // intersections where the intersections make an
- // angle > resolveFeatureAngle get refined up to the maximum level.
-
- refinementSurfaces
- {
-// motorBike
-// {
-// // Surface-wise min and max refinement level
-// level (5 6);
-//
-// // Optional specification of patch type (default is wall). No
-// // constraint types (cyclic, symmetry) etc. are allowed.
-// patchInfo
-// {
-// type wall;
-// inGroups (motorBike);
-// }
-// }
- }
-
- // Resolve sharp angles
- resolveFeatureAngle 30;
-
-
- // Region-wise refinement
- // ~~~~~~~~~~~~~~~~~~~~~~
-
- // Specifies refinement level for cells in relation to a surface. One of
- // three modes
- // - distance. 'levels' specifies per distance to the surface the
- // wanted refinement level. The distances need to be specified in
- // descending order.
- // - inside. 'levels' is only one entry and only the level is used. All
- // cells inside the surface get refined up to the level. The surface
- // needs to be closed for this to be possible.
- // - outside. Same but cells outside.
-
- refinementRegions
- {
-// refinementBox
-// {
-// mode inside;
-// levels ((1E15 4));
-// }
- }
-
-
- // Mesh selection
- // ~~~~~~~~~~~~~~
-
- // After refinement patches get added for all refinementSurfaces and
- // all cells intersecting the surfaces get put into these patches. The
- // section reachable from the locationInMesh is kept.
- // NOTE: This point should never be on a face, always inside a cell, even
- // after refinement.
- locationInMesh (-1 0 0);
-
-
- // Whether any faceZones (as specified in the refinementSurfaces)
- // are only on the boundary of corresponding cellZones or also allow
- // free-standing zone faces. Not used if there are no faceZones.
- allowFreeStandingZoneFaces true;
-}
-
-
-
-// Settings for the snapping.
-snapControls
-{
- //- Number of patch smoothing iterations before finding correspondence
- // to surface
- nSmoothPatch 3;
-
- //- Relative distance for points to be attracted by surface feature point
- // or edge. True distance is this factor times local
- // maximum edge length.
- tolerance 4.0;
-
- //- Number of mesh displacement relaxation iterations.
- nSolveIter 0;
-
- //- Maximum number of snapping relaxation iterations. Should stop
- // before upon reaching a correct mesh.
- nRelaxIter 5;
-
- //- Highly experimental and wip: number of feature edge snapping
- // iterations. Leave out altogether to disable.
- // Do not use here since mesh resolution too low and baffles present
- //nFeatureSnapIter 10;
-}
-
-
-
-// Settings for the layer addition.
-addLayersControls
-{
- // Are the thickness parameters below relative to the undistorted
- // size of the refined cell outside layer (true) or absolute sizes (false).
- relativeSizes false;
-
- // Per final patch (so not geometry!) the layer information
- layers
- {
- blob.stl_patch1
- {
- nSurfaceLayers 4;
- }
- }
-
- // Expansion factor for layer mesh
- expansionRatio 1.5;
-
- // Wanted thickness of final added cell layer. If multiple layers
- // is the thickness of the layer furthest away from the wall.
- // Relative to undistorted size of cell outside layer.
- // is the thickness of the layer furthest away from the wall.
- // See relativeSizes parameter.
- finalLayerThickness 0.02;
-
- // Minimum thickness of cell layer. If for any reason layer
- // cannot be above minThickness do not add layer.
- // Relative to undistorted size of cell outside layer.
- minThickness 0.005;
-
- // If points get not extruded do nGrow layers of connected faces that are
- // also not grown. This helps convergence of the layer addition process
- // close to features.
- // Note: changed(corrected) w.r.t 17x! (didn't do anything in 17x)
- nGrow 0;
-
- // Advanced settings
-
- // When not to extrude surface. 0 is flat surface, 90 is when two faces
- // are perpendicular
- featureAngle 90;
-
- // Maximum number of snapping relaxation iterations. Should stop
- // before upon reaching a correct mesh.
- nRelaxIter 3;
-
- // Number of smoothing iterations of surface normals
- nSmoothSurfaceNormals 1;
-
- // Number of smoothing iterations of interior mesh movement direction
- nSmoothNormals 3;
-
- // Smooth layer thickness over surface patches
- nSmoothThickness 10;
-
- // Stop layer growth on highly warped cells
- maxFaceThicknessRatio 1000;
-
- // Reduce layer growth where ratio thickness to medial
- // distance is large
- maxThicknessToMedialRatio 0.3;
-
- // Angle used to pick up medial axis points
- // Note: changed(corrected) w.r.t 17x! 90 degrees corresponds to 130 in 17x.
- minMedianAxisAngle 90;
-
-
- // Create buffer region for new layer terminations
- nBufferCellsNoExtrude 0;
-
-
- // Overall max number of layer addition iterations. The mesher will exit
- // if it reaches this number of iterations; possibly with an illegal
- // mesh.
- nLayerIter 50;
-}
-
-
-
-// Generic mesh quality settings. At any undoable phase these determine
-// where to undo.
-meshQualityControls
-{
- #include "meshQualityDict"
-
- // Advanced
-
- //- Number of error distribution iterations
- nSmoothScale 4;
- //- amount to scale back displacement at error points
- errorReduction 0.75;
-}
-
-
-// Advanced
-
-// Flags for optional output
-// 0 : only write final meshes
-// 1 : write intermediate meshes
-// 2 : write volScalarField with cellLevel for postprocessing
-// 4 : write current intersections as .obj files
-debug 0;
-
-
-// Merge tolerance. Is fraction of overall bounding box of initial mesh.
-// Note: the write tolerance needs to be higher than this.
-mergeTolerance 1e-6;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/blob/system/topoSetDict b/tutorials/mesh/cvMesh/blob/system/topoSetDict
deleted file mode 100644
index f58b038ef44b5ca08da4e9f125f1ef933fa66ebd..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/blob/system/topoSetDict
+++ /dev/null
@@ -1,149 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object topoSetDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-actions
-(
- {
- name z;
- type cellSet;
- action new;
- source boxToCell;
- sourceInfo
- {
- box (-100 -100 -0.2)(100 100 100);
- }
- }
-
- {
- name zf;
- type faceSet;
- action new;
- source cellToFace;
- sourceInfo
- {
- set z;
- option all;
- }
- }
-
- {
- name z;
- type cellSet;
- action invert;
- }
-
- {
- name zf;
- type faceSet;
- action subset;
- source cellToFace;
- sourceInfo
- {
- set z;
- option all;
- }
- }
-
- // ~~~~~~~~~~~~~~~~ //
-
- {
- name x;
- type cellSet;
- action new;
- source boxToCell;
- sourceInfo
- {
- box (-0.32 -100 -100)(100 100 100);
- }
- }
-
- {
- name xf;
- type faceSet;
- action new;
- source cellToFace;
- sourceInfo
- {
- set x;
- option all;
- }
- }
-
- {
- name x;
- type cellSet;
- action invert;
- }
-
- {
- name xf;
- type faceSet;
- action subset;
- source cellToFace;
- sourceInfo
- {
- set x;
- option all;
- }
- }
-
- // ~~~~~~~~~~~~~~~~ //
-
- {
- name sp;
- type cellSet;
- action new;
- source sphereToCell;
- sourceInfo
- {
- centre (-0.3 -0.3 -0.3);
- radius 0.4;
- }
- }
-
- {
- name spf;
- type faceSet;
- action new;
- source cellToFace;
- sourceInfo
- {
- set sp;
- option all;
- }
- }
-
- {
- name sp;
- type cellSet;
- action invert;
- }
-
- {
- name spf;
- type faceSet;
- action subset;
- source cellToFace;
- sourceInfo
- {
- set sp;
- option all;
- }
- }
-);
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/Allclean b/tutorials/mesh/cvMesh/flange/Allclean
deleted file mode 100755
index dc1ee49a8fe81c236846b581745b8bf9c0f9b13a..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/Allclean
+++ /dev/null
@@ -1,14 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/CleanFunctions
-
-rm -rf constant/extendedFeatureEdgeMesh > /dev/null 2>&1
-rm -r constant/ccx constant/ccy constant/ccz > /dev/null 2>&1
-rm -r constant/internalDelaunayVertices constant/targetCellSize > /dev/null 2>&1
-rm -r 0/ccx 0/ccy 0/ccz > /dev/null 2>&1
-
-cleanCase
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/flange/Allrun b/tutorials/mesh/cvMesh/flange/Allrun
deleted file mode 100755
index f3f891243724f6262cc41d0e6115929907235b4d..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/Allrun
+++ /dev/null
@@ -1,19 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-runApplication surfaceFeatureExtract
-
-# Create tight-fitting background mesh
-runApplication blockMesh
-runApplication topoSet -dict system/topoSetDict-background
-mv log.topoSet log.topoSet.background
-runApplication subsetMesh background -patch walls -overwrite
-
-runApplication cvMesh
-runApplication collapseEdges -latestTime -collapseFaces
-runApplication checkMesh -latestTime -allGeometry -allTopology
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/flange/Allrun-parallel b/tutorials/mesh/cvMesh/flange/Allrun-parallel
deleted file mode 100755
index f5bedb8935ec8f063146fa1432b4769182cdc2f9..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/Allrun-parallel
+++ /dev/null
@@ -1,26 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-# Get the number of processors to run on from system/decomposeParDict
-nProc=$(getNumberOfProcessors)
-
-runApplication surfaceFeatureExtract
-
-# Create tight-fitting background mesh
-runApplication blockMesh
-runApplication topoSet -dict system/topoSetDict-background
-mv log.topoSet log.topoSet.background
-runApplication subsetMesh background -patch walls -overwrite
-
-runApplication decomposePar
-
-runParallel cvMesh $nProc
-runParallel collapseEdges $nProc -latestTime -collapseFaces
-runParallel checkMesh $nProc -latestTime -allTopology -allGeometry
-
-runApplication reconstructParMesh -latestTime
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/flange/Alltest b/tutorials/mesh/cvMesh/flange/Alltest
deleted file mode 100755
index 75b5887193055fc87ce8120145c5e72d0c335399..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/Alltest
+++ /dev/null
@@ -1,21 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-runApplication surfaceFeatureExtract
-
-# Create tight-fitting background mesh
-runApplication blockMesh
-runApplication cvMesh
-
-# Change collapseEdges to only do one iteration
-cp system/collapseDict system/collapseDict.org
-
-sed -e s/"\(maximumIterations[ \t]*\)\([0-9]*\);"/"\1 1;"/g \
-system/collapseDict.org > system/collapseDict
-
-runApplication collapseEdges -latestTime -collapseFaces
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/flange/constant/polyMesh/blockMeshDict b/tutorials/mesh/cvMesh/flange/constant/polyMesh/blockMeshDict
deleted file mode 100644
index 81d15816e37cbce5427f961bf339915ba1395524..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/constant/polyMesh/blockMeshDict
+++ /dev/null
@@ -1,69 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object blockMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-convertToMeters 1.0;
-
-xmin -0.0265;
-xmax 0.0265;
-ymin -0.028;
-ymax 0.023;
-zmin -0.024;
-zmax 0.01;
-
-vertices
-(
- ($xmin $ymin $zmin)
- ($xmax $ymin $zmin)
- ($xmax $ymax $zmin)
- ($xmin $ymax $zmin)
- ($xmin $ymin $zmax)
- ($xmax $ymin $zmax)
- ($xmax $ymax $zmax)
- ($xmin $ymax $zmax)
-
-);
-
-blocks
-(
- hex (0 1 2 3 4 5 6 7) (5 6 3) simpleGrading (1 1 1)
-);
-
-edges
-(
-);
-
-boundary
-(
- walls
- {
- type wall;
- faces
- (
- (3 7 6 2)
- (0 4 7 3)
- (2 6 5 1)
- (1 5 4 0)
- (0 3 2 1)
- (4 5 6 7)
- );
- }
-);
-
-mergePatchPairs
-(
-);
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/constant/polyMesh/boundary b/tutorials/mesh/cvMesh/flange/constant/polyMesh/boundary
deleted file mode 100644
index efe6bfe832fedad4de807c79b291f6dcc2b14dde..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/constant/polyMesh/boundary
+++ /dev/null
@@ -1,28 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class polyBoundaryMesh;
- location "constant/polyMesh";
- object boundary;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-1
-(
- walls
- {
- type wall;
- nFaces 126;
- startFace 207;
- }
-)
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/constant/triSurface/flange.obj b/tutorials/mesh/cvMesh/flange/constant/triSurface/flange.obj
deleted file mode 100644
index 8b3998fe8a8b0b5e4759cef6521038f4e71db02d..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/constant/triSurface/flange.obj
+++ /dev/null
@@ -1,9710 +0,0 @@
-# Wavefront OBJ file
-# Regions:
-# 0 patch1
-# 1 patch2
-# 2 patch3
-# 3 patch4
-#
-# points : 3228
-# triangles : 6468
-#
-v 0.003234 0.00317894 -0.01375
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-v 0.0065 0.002 -0.02375
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-v 0.0210577 0.002 -0.00168803
-v 0.0193148 0.002 -0.00345514
-v 0.0193617 0.002 -0.0022119
-v 0.0194085 0.002 -0.0009687
-v 0.0177593 0.002 -0.00325
-v 0.0177593 0.002 -0.00182637
-v 0.0177593 0.002 -0.000249369
-v 0.0107846 0.002 -0.0075088
-v 0.0096058 0.002 -0.007319
-v 0.0119634 0.002 -0.0076985
-v 0.0162069 0.002 -0.0034543
-v 0.0147592 0.002 -0.0040539
-v 0.0166766 0.002 -0.00212568
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-v 0.0158684 0.002 0.00057542
-v 0.008014 0.002 -0.00136532
-v 0.0090659 0.002 -0.00221207
-v 0.0079468 0.002 -0.0035327
-v 0.0065 0.002 -0.00193928
-v 0.0065 0.002 0.00043318
-v 0.008476 0.002 5.5378e-05
-v 0.0106532 0.002 -0.00083587
-v 0.0065 0.002 0.00225
-v 0.0088096 0.002 0.00225
-v 0.0116557 0.002 0.00089514
-v 0.0120812 0.002 2.32197e-05
-v 0.010708 0.002 0.0011982
-v 0.0121778 0.002 0.00146398
-v 0.0130909 0.002 0.00076461
-v 0.0120291 0.002 0.00225
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-v 0.0089605 0.002 -0.00529437
-v 0.0120464 0.002 -0.0012165
-v 0.0129252 0.002 -0.000731
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-g patch2
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-f 927 932 2829
-g patch3
-f 2867 2868 126
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-f 2869 2867 125
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-g patch4
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-f 3065 3083 3078
-f 3078 3039 3065
-f 1206 1126 3078
-f 3078 3083 1206
-f 3067 3084 3083
-f 3083 3065 3067
-f 1208 1206 3083
-f 3083 3084 1208
-f 3021 3084 3067
-f 3067 3069 3021
-f 1210 1208 3084
-f 3084 3021 1210
-f 3021 3069 3022
-f 3022 1212 3021
-f 1108 1107 3085
-f 3085 3086 1108
-f 1107 1110 3087
-f 3087 3085 1107
-f 1110 1112 3088
-f 3088 3087 1110
-f 1112 1114 3089
-f 3089 3088 1112
-f 1114 1116 3090
-f 3090 3089 1114
-f 1120 1119 3091
-f 3091 3092 1120
-f 1116 1120 3092
-f 3092 3090 1116
-f 1119 1122 3093
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-f 1122 1124 3094
-f 3094 3093 1122
-f 3095 1128 1127
-f 1127 3096 3095
-f 1128 3095 3097
-f 3097 1130 1128
-f 1132 1130 3097
-f 3097 3098 1132
-f 1134 1132 3098
-f 3098 3099 1134
-f 1136 1134 3099
-f 3099 3100 1136
-f 3101 3102 1140
-f 1140 1139 3101
-f 1139 1136 3100
-f 3100 3101 1139
-f 1142 1140 3102
-f 3102 3103 1142
-f 1124 1142 3103
-f 3103 3094 1124
-f 1189 1108 3086
-f 3086 3104 1189
-f 1191 1189 3104
-f 3104 3105 1191
-f 1193 1191 3105
-f 3105 3106 1193
-f 1195 1193 3106
-f 3106 3107 1195
-f 1197 1195 3107
-f 3107 3108 1197
-f 1201 1200 3109
-f 3109 3110 1201
-f 1200 1197 3108
-f 3108 3109 1200
-f 1203 1201 3110
-f 3110 3111 1203
-f 1205 1203 3111
-f 3111 3112 1205
-f 3113 3096 1127
-f 1127 1207 3113
-f 1207 1209 3114
-f 3114 3113 1207
-f 1209 1211 3115
-f 3115 3114 1209
-f 1211 1213 3116
-f 3116 3115 1211
-f 1213 1215 3117
-f 3117 3116 1213
-f 3118 1219 1218
-f 1218 3119 3118
-f 1219 3118 3117
-f 3117 1215 1219
-f 1218 1221 3120
-f 3120 3119 1218
-f 1221 1205 3112
-f 3112 3120 1221
-f 3086 3085 3121
-f 3121 3122 3086
-f 3085 3087 3123
-f 3123 3121 3085
-f 3087 3088 3124
-f 3124 3123 3087
-f 3088 3089 3125
-f 3125 3124 3088
-f 3089 3090 3126
-f 3126 3125 3089
-f 3092 3091 3127
-f 3127 3128 3092
-f 3090 3092 3128
-f 3128 3126 3090
-f 3091 3093 3129
-f 3129 3127 3091
-f 3093 3094 3130
-f 3130 3129 3093
-f 3095 3096 3131
-f 3131 3132 3095
-f 3097 3095 3132
-f 3132 3133 3097
-f 3098 3097 3133
-f 3133 3134 3098
-f 3099 3098 3134
-f 3134 3135 3099
-f 3100 3099 3135
-f 3135 3136 3100
-f 3102 3101 3137
-f 3137 3138 3102
-f 3101 3100 3136
-f 3136 3137 3101
-f 3103 3102 3138
-f 3138 3139 3103
-f 3094 3103 3139
-f 3139 3130 3094
-f 3104 3086 3122
-f 3122 3140 3104
-f 3105 3104 3140
-f 3140 3141 3105
-f 3106 3105 3141
-f 3141 3142 3106
-f 3107 3106 3142
-f 3142 3143 3107
-f 3108 3107 3143
-f 3143 3144 3108
-f 3110 3109 3145
-f 3145 3146 3110
-f 3109 3108 3144
-f 3144 3145 3109
-f 3111 3110 3146
-f 3146 3147 3111
-f 3112 3111 3147
-f 3147 3148 3112
-f 3096 3113 3149
-f 3149 3131 3096
-f 3113 3114 3150
-f 3150 3149 3113
-f 3114 3115 3151
-f 3151 3150 3114
-f 3115 3116 3152
-f 3152 3151 3115
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-f 3153 3152 3116
-f 3118 3119 3154
-f 3154 3155 3118
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-f 3156 3154 3119
-f 3120 3112 3148
-f 3148 3156 3120
-f 3122 3121 3157
-f 3157 3158 3122
-f 3121 3123 3159
-f 3159 3157 3121
-f 3123 3124 3160
-f 3160 3159 3123
-f 3124 3125 3161
-f 3161 3160 3124
-f 3125 3126 3162
-f 3162 3161 3125
-f 3128 3127 3163
-f 3163 3164 3128
-f 3126 3128 3164
-f 3164 3162 3126
-f 3127 3129 3165
-f 3165 3163 3127
-f 3129 3130 3166
-f 3166 3165 3129
-f 3132 3131 3167
-f 3167 3168 3132
-f 3133 3132 3168
-f 3168 3169 3133
-f 3134 3133 3169
-f 3169 3170 3134
-f 3135 3134 3170
-f 3170 3171 3135
-f 3136 3135 3171
-f 3171 3172 3136
-f 3138 3137 3173
-f 3173 3174 3138
-f 3137 3136 3172
-f 3172 3173 3137
-f 3139 3138 3174
-f 3174 3175 3139
-f 3130 3139 3175
-f 3175 3166 3130
-f 3140 3122 3158
-f 3158 3176 3140
-f 3141 3140 3176
-f 3176 3177 3141
-f 3142 3141 3177
-f 3177 3178 3142
-f 3143 3142 3178
-f 3178 3179 3143
-f 3144 3143 3179
-f 3179 3180 3144
-f 3146 3145 3181
-f 3181 3182 3146
-f 3145 3144 3180
-f 3180 3181 3145
-f 3147 3146 3182
-f 3182 3183 3147
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-f 3131 3149 3185
-f 3185 3167 3131
-f 3149 3150 3186
-f 3186 3185 3149
-f 3150 3151 3187
-f 3187 3186 3150
-f 3151 3152 3188
-f 3188 3187 3151
-f 3152 3153 3189
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-f 3155 3154 3190
-f 3190 3191 3155
-f 3153 3155 3191
-f 3191 3189 3153
-f 3154 3156 3192
-f 3192 3190 3154
-f 3156 3148 3184
-f 3184 3192 3156
-f 3158 3157 3193
-f 3193 3194 3158
-f 3157 3159 3195
-f 3195 3193 3157
-f 3159 3160 3196
-f 3196 3195 3159
-f 3160 3161 3197
-f 3197 3196 3160
-f 3161 3162 3198
-f 3198 3197 3161
-f 3164 3163 3199
-f 3199 3200 3164
-f 3162 3164 3200
-f 3200 3198 3162
-f 3163 3165 3201
-f 3201 3199 3163
-f 3165 3166 3202
-f 3202 3201 3165
-f 3168 3167 3203
-f 3203 3204 3168
-f 3169 3168 3204
-f 3204 3205 3169
-f 3170 3169 3205
-f 3205 3206 3170
-f 3171 3170 3206
-f 3206 3207 3171
-f 3172 3171 3207
-f 3207 3208 3172
-f 3174 3173 3209
-f 3209 3210 3174
-f 3173 3172 3208
-f 3208 3209 3173
-f 3175 3174 3210
-f 3210 3211 3175
-f 3166 3175 3211
-f 3211 3202 3166
-f 3176 3158 3194
-f 3194 3212 3176
-f 3177 3176 3212
-f 3212 3213 3177
-f 3178 3177 3213
-f 3213 3214 3178
-f 3179 3178 3214
-f 3214 3215 3179
-f 3180 3179 3215
-f 3215 3216 3180
-f 3182 3181 3217
-f 3217 3218 3182
-f 3181 3180 3216
-f 3216 3217 3181
-f 3183 3182 3218
-f 3218 3219 3183
-f 3184 3183 3219
-f 3219 3220 3184
-f 3167 3185 3221
-f 3221 3203 3167
-f 3185 3186 3222
-f 3222 3221 3185
-f 3186 3187 3223
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-f 3187 3188 3224
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-f 3194 3193 503
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-f 518 515 3197
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-f 3204 3203 664
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-f 688 530 3202
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-f 838 841 3213
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-f 3216 3215 848
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-f 3218 3217 853
-f 853 856 3218
-f 3217 3216 851
-f 851 853 3217
-f 3219 3218 856
-f 856 860 3219
-f 3220 3219 860
-f 860 863 3220
-f 3203 3221 978
-f 978 664 3203
-f 3221 3222 981
-f 981 978 3221
-f 3222 3223 984
-f 984 981 3222
-f 3223 3224 987
-f 987 984 3223
-f 3224 3225 990
-f 990 987 3224
-f 3227 3226 994
-f 994 993 3227
-f 3225 3227 993
-f 993 990 3225
-f 3226 3228 999
-f 999 994 3226
-f 3228 3220 863
-f 863 999 3228
diff --git a/tutorials/mesh/cvMesh/flange/system/collapseDict b/tutorials/mesh/cvMesh/flange/system/collapseDict
deleted file mode 100644
index 729710d9fdd70b60a0f0787fc62d2fe3e0d0b415..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/collapseDict
+++ /dev/null
@@ -1,52 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object collapseDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-collapseEdgesCoeffs
-{
- minimumEdgeLength 1e-6;
- maximumMergeAngle 180;
- reductionFactor 0.5;
-}
-
-collapseFacesCoeffs
-{
- initialFaceLengthFactor 0.5;
- reductionFactor 0.5;
-
- allowEarlyCollapseToPoint on;
- allowEarlyCollapseCoeff 0.2;
- guardFraction 0.1;
- maxCollapseFaceToPointSideLengthCoeff 0.3;
-}
-
-meshQualityCoeffs
-{
- #include "meshQualityDict";
- maximumIterations 10;
- maximumSmoothingIterations 1;
- maxPointErrorCount 5;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/controlDict b/tutorials/mesh/cvMesh/flange/system/controlDict
deleted file mode 100644
index 8d7092895478f5bc1dc88904efe55f2249ce6ee6..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/controlDict
+++ /dev/null
@@ -1,58 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object controlDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-application cvMesh;
-
-startFrom startTime;
-
-startTime 0;
-
-stopAt endTime;
-
-endTime 100;
-
-deltaT 1;
-
-writeControl timeStep;
-
-writeInterval 100;
-
-purgeWrite 0;
-
-writeFormat ascii;
-
-writePrecision 10;
-
-writeCompression uncompressed;
-
-timeFormat general;
-
-timePrecision 6;
-
-runTimeModifiable yes;
-
-libs ("libdistributed.so");
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/cvMeshDict b/tutorials/mesh/cvMesh/flange/system/cvMeshDict
deleted file mode 100644
index fe581a549397396649d5df9696bac8cef3367406..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/cvMeshDict
+++ /dev/null
@@ -1,200 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object cvMeshDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-// Any scalar with a name <name>Coeff specifies a value that will be implemented
-// as a faction of the local target cell size
-
-geometry
-{
- flange.obj
- {
- type triSurfaceMesh;
- }
-}
-
-
-backgroundMeshDecomposition
-{
- minLevels 1;
- sampleResolution 4;
- spanScale 5;
- maxCellWeightCoeff 10;
-}
-
-
-surfaceConformation
-{
- locationInMesh (0 0 0);
-
- pointPairDistanceCoeff 0.1;
-
- mixedFeaturePointPPDistanceCoeff 5.0;
-
- featurePointExclusionDistanceCoeff 0.7;
-
- featureEdgeExclusionDistanceCoeff 0.7;
-
- surfaceSearchDistanceCoeff 5;
-
- maxSurfaceProtrusionCoeff 0.1;
-
- maxQuadAngle 125;
-
- surfaceConformationRebuildFrequency 10;
-
- specialiseFeaturePoints on;
-
- conformationControls
- {
- edgeSearchDistCoeff 5;
- surfacePtReplaceDistCoeff 0.5;
- surfacePtExclusionDistanceCoeff 0.5;
-
- maxIterations 15;
-
- iterationToInitialHitRatioLimit 0.0001;
- }
-
- geometryToConformTo
- {
- flange.obj
- {
- featureMethod extendedFeatureEdgeMesh;
- extendedFeatureEdgeMesh "flange.extendedFeatureEdgeMesh";
- }
- }
-
- additionalFeatures
- {
- }
-}
-
-
-initialPoints
-{
- minimumSurfaceDistanceCoeff 0.55;
-
- initialPointsMethod autoDensity;
- //initialPointsMethod pointFile;
-
- autoDensityCoeffs
- {
- minLevels 1;
- maxSizeRatio 3.0;
- sampleResolution 4;
- surfaceSampleResolution 5;
- }
-
- pointFileCoeffs
- {
- pointFile "constant/internalDelaunayVertices";
- }
-}
-
-
-motionControl
-{
- defaultCellSize 0.001;
-
- shapeControlFunctions
- {
- flange.obj
- {
- type searchableSurfaceControl;
- priority 1;
- mode inside;
- surfaceCellSizeFunction uniformValue;
- uniformValueCoeffs
- {
- surfaceCellSize $defaultCellSize;
- }
-
- cellSizeFunction uniform;
- uniformCoeffs{}
- }
- }
-
- cellAspectRatioControl
- {
- aspectRatio 1.0;
- aspectRatioDirection (0 0 0);
- }
-
- relaxationModel adaptiveLinear;
-
- adaptiveLinearCoeffs
- {
- relaxationStart 1.0;
- relaxationEnd 0.0;
- }
-
- objOutput no;
-
- timeChecks no;
-
- maxLoadUnbalance 0.2;
-
- alignmentSearchSpokes 36;
-
- alignmentAcceptanceAngle 48;
-
- sizeAndAlignmentRebuildFrequency 20;
-
- pointInsertionCriteria
- {
- cellCentreDistCoeff 1.75;
- faceAreaRatioCoeff 0.0025;
- acceptanceAngle 21.5;
- }
-
- pointRemovalCriteria
- {
- cellCentreDistCoeff 0.65;
- }
-
- faceAreaWeightModel piecewiseLinearRamp;
-
- piecewiseLinearRampCoeffs
- {
- lowerAreaFraction 0.5;
- upperAreaFraction 1.0;
- }
-}
-
-
-polyMeshFiltering
-{
- filterEdges on;
- filterFaces off;
- writeTetDualMesh false;
-}
-
-
-meshQualityControls
-{
- #include "meshQualityDict"
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/decomposeParDict b/tutorials/mesh/cvMesh/flange/system/decomposeParDict
deleted file mode 100644
index afb5d8a226cc699ab6db67b043e65ba01103f2d7..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/decomposeParDict
+++ /dev/null
@@ -1,46 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object decomposeParDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-numberOfSubdomains 8;
-
-//method scotch;
-method hierarchical;
-
-simpleCoeffs
-{
- n ( 2 2 2 );
- delta 0.001;
-}
-
-hierarchicalCoeffs
-{
- n ( 2 2 2 );
- delta 0.001;
- order xyz;
-}
-
-manualCoeffs
-{
- dataFile "";
-}
-
-distributed no;
-
-roots ( );
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/faceSetDict b/tutorials/mesh/cvMesh/flange/system/faceSetDict
deleted file mode 100644
index 68666ebc86dbf5e0b216a9c6d6e51a790506f54d..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/faceSetDict
+++ /dev/null
@@ -1,35 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object faceSetDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-// Name of set to operate on
-name facesToBeRemoved;
-
-// One of clear/new/invert/add/delete|subset/list
-action new;
-
-// Actions to apply to pointSet. These are all the topoSetSource's ending
-// in ..ToFace (see the meshTools library).
-topoSetSources
-(
- // Select by explicitly providing face labels
- labelToFace
- {
- value #include "../facesToBeRemoved";
- }
-);
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/fvSchemes b/tutorials/mesh/cvMesh/flange/system/fvSchemes
deleted file mode 100644
index 046181f3576de294a25da6429547f491989dd144..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/fvSchemes
+++ /dev/null
@@ -1,55 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSchemes;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-ddtSchemes
-{
- default none;
-}
-
-gradSchemes
-{
- default Gauss linear;
-}
-
-divSchemes
-{
- default none;
-}
-
-laplacianSchemes
-{
- default none;
- laplacian(nn) Gauss linear corrected;
-}
-
-interpolationSchemes
-{
- default none;
-}
-
-snGradSchemes
-{
- default corrected;
-}
-
-fluxRequired
-{
- default no;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/fvSolution b/tutorials/mesh/cvMesh/flange/system/fvSolution
deleted file mode 100644
index 6368c1229865b54c53db9d5d239567540a12540b..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/fvSolution
+++ /dev/null
@@ -1,29 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSolution;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-solvers
-{
- nn
- {
- solver PCG;
- preconditioner DIC;
- tolerance 1e-06;
- relTol 0;
- }
-}
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/meshQualityDict b/tutorials/mesh/cvMesh/flange/system/meshQualityDict
deleted file mode 100644
index 4a182cc0b58b9795df86df5d6e220f285bd42595..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/meshQualityDict
+++ /dev/null
@@ -1,73 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object meshQualityDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-//- Maximum non-orthogonality allowed. Set to 180 to disable.
-maxNonOrtho 45;
-
-//- Max skewness allowed. Set to <0 to disable.
-maxBoundarySkewness 50;
-maxInternalSkewness 10;
-
-//- Max concaveness allowed. Is angle (in degrees) below which concavity
-// is allowed. 0 is straight face, <0 would be convex face.
-// Set to 180 to disable.
-maxConcave 80;
-
-//- Minimum quality of the tet formed by the face-centre
-// and variable base point minimum decomposition triangles and
-// the cell centre. This has to be a positive number for tracking
-// to work. Set to very negative number (e.g. -1E30) to
-// disable.
-// <0 = inside out tet,
-// 0 = flat tet
-// 1 = regular tet
-minTetQuality 1e-30;
-
-//- Minimum pyramid volume. Is absolute volume of cell pyramid.
-// Set to a sensible fraction of the smallest cell volume expected.
-// Set to very negative number (e.g. -1E30) to disable.
-minVol 0;
-
-//- Minimum face area. Set to <0 to disable.
-minArea -1;
-
-//- Minimum face twist. Set to <-1 to disable. dot product of face normal
-//- and face centre triangles normal
-minTwist 0.001;
-
-//- minimum normalised cell determinant
-//- 1 = hex, <= 0 = folded or flattened illegal cell
-minDeterminant 0.001;
-
-//- minFaceWeight (0 -> 0.5)
-minFaceWeight 0.02;
-
-//- minVolRatio (0 -> 1)
-minVolRatio 0.01;
-
-//must be >0 for Fluent compatibility
-minTriangleTwist -1;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/snappyHexMeshDict b/tutorials/mesh/cvMesh/flange/system/snappyHexMeshDict
deleted file mode 100644
index 12c88b16c4dba21ff638a3d6c8738fb70fa44c40..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/snappyHexMeshDict
+++ /dev/null
@@ -1,308 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object snappyHexMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-// Which of the steps to run
-castellatedMesh false;
-snap false;
-addLayers true;
-
-
-// Geometry. Definition of all surfaces. All surfaces are of class
-// searchableSurface.
-// Surfaces are used
-// - to specify refinement for any mesh cell intersecting it
-// - to specify refinement for any mesh cell inside/outside/near
-// - to 'snap' the mesh boundary to the surface
-geometry
-{
-// motorBike.obj
-// {
-// type triSurfaceMesh;
-// name motorBike;
-// }
-//
-// refinementBox
-// {
-// type searchableBox;
-// min (-1.0 -0.7 0.0);
-// max ( 8.0 0.7 2.5);
-// }
-};
-
-
-
-// Settings for the castellatedMesh generation.
-castellatedMeshControls
-{
-
- // Refinement parameters
- // ~~~~~~~~~~~~~~~~~~~~~
-
- // If local number of cells is >= maxLocalCells on any processor
- // switches from from refinement followed by balancing
- // (current method) to (weighted) balancing before refinement.
- maxLocalCells 100000;
-
- // Overall cell limit (approximately). Refinement will stop immediately
- // upon reaching this number so a refinement level might not complete.
- // Note that this is the number of cells before removing the part which
- // is not 'visible' from the keepPoint. The final number of cells might
- // actually be a lot less.
- maxGlobalCells 2000000;
-
- // The surface refinement loop might spend lots of iterations refining just a
- // few cells. This setting will cause refinement to stop if <= minimumRefine
- // are selected for refinement. Note: it will at least do one iteration
- // (unless the number of cells to refine is 0)
- minRefinementCells 10;
-
- // Allow a certain level of imbalance during refining
- // (since balancing is quite expensive)
- // Expressed as fraction of perfect balance (= overall number of cells /
- // nProcs). 0=balance always.
- maxLoadUnbalance 0.10;
-
-
- // Number of buffer layers between different levels.
- // 1 means normal 2:1 refinement restriction, larger means slower
- // refinement.
- nCellsBetweenLevels 3;
-
-
-
- // Explicit feature edge refinement
- // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
- // Specifies a level for any cell intersected by its edges.
- // This is a featureEdgeMesh, read from constant/triSurface for now.
- features
- (
- //{
- // file "someLine.eMesh";
- // level 2;
- //}
- );
-
-
-
- // Surface based refinement
- // ~~~~~~~~~~~~~~~~~~~~~~~~
-
- // Specifies two levels for every surface. The first is the minimum level,
- // every cell intersecting a surface gets refined up to the minimum level.
- // The second level is the maximum level. Cells that 'see' multiple
- // intersections where the intersections make an
- // angle > resolveFeatureAngle get refined up to the maximum level.
-
- refinementSurfaces
- {
-// motorBike
-// {
-// // Surface-wise min and max refinement level
-// level (5 6);
-//
-// // Optional specification of patch type (default is wall). No
-// // constraint types (cyclic, symmetry) etc. are allowed.
-// patchInfo
-// {
-// type wall;
-// inGroups (motorBike);
-// }
-// }
- }
-
- // Resolve sharp angles
- resolveFeatureAngle 30;
-
-
- // Region-wise refinement
- // ~~~~~~~~~~~~~~~~~~~~~~
-
- // Specifies refinement level for cells in relation to a surface. One of
- // three modes
- // - distance. 'levels' specifies per distance to the surface the
- // wanted refinement level. The distances need to be specified in
- // descending order.
- // - inside. 'levels' is only one entry and only the level is used. All
- // cells inside the surface get refined up to the level. The surface
- // needs to be closed for this to be possible.
- // - outside. Same but cells outside.
-
- refinementRegions
- {
-// refinementBox
-// {
-// mode inside;
-// levels ((1E15 4));
-// }
- }
-
-
- // Mesh selection
- // ~~~~~~~~~~~~~~
-
- // After refinement patches get added for all refinementSurfaces and
- // all cells intersecting the surfaces get put into these patches. The
- // section reachable from the locationInMesh is kept.
- // NOTE: This point should never be on a face, always inside a cell, even
- // after refinement.
- locationInMesh (-1 0 0);
-
-
- // Whether any faceZones (as specified in the refinementSurfaces)
- // are only on the boundary of corresponding cellZones or also allow
- // free-standing zone faces. Not used if there are no faceZones.
- allowFreeStandingZoneFaces true;
-}
-
-
-
-// Settings for the snapping.
-snapControls
-{
- //- Number of patch smoothing iterations before finding correspondence
- // to surface
- nSmoothPatch 3;
-
- //- Relative distance for points to be attracted by surface feature point
- // or edge. True distance is this factor times local
- // maximum edge length.
- tolerance 4.0;
-
- //- Number of mesh displacement relaxation iterations.
- nSolveIter 0;
-
- //- Maximum number of snapping relaxation iterations. Should stop
- // before upon reaching a correct mesh.
- nRelaxIter 5;
-
- //- Highly experimental and wip: number of feature edge snapping
- // iterations. Leave out altogether to disable.
- // Do not use here since mesh resolution too low and baffles present
- //nFeatureSnapIter 10;
-}
-
-
-
-// Settings for the layer addition.
-addLayersControls
-{
- // Are the thickness parameters below relative to the undistorted
- // size of the refined cell outside layer (true) or absolute sizes (false).
- relativeSizes false;
-
- // Per final patch (so not geometry!) the layer information
- layers
- {
- "flange.obj.*"
- {
- nSurfaceLayers 1;
- }
- }
-
- // Expansion factor for layer mesh
- expansionRatio 1.5;
-
- // Wanted thickness of final added cell layer. If multiple layers
- // is the thickness of the layer furthest away from the wall.
- // Relative to undistorted size of cell outside layer.
- // is the thickness of the layer furthest away from the wall.
- // See relativeSizes parameter.
- finalLayerThickness 0.0003;
-
- // Minimum thickness of cell layer. If for any reason layer
- // cannot be above minThickness do not add layer.
- // Relative to undistorted size of cell outside layer.
- minThickness 0.0001;
-
- // If points get not extruded do nGrow layers of connected faces that are
- // also not grown. This helps convergence of the layer addition process
- // close to features.
- // Note: changed(corrected) w.r.t 17x! (didn't do anything in 17x)
- nGrow 0;
-
- // Advanced settings
-
- // When not to extrude surface. 0 is flat surface, 90 is when two faces
- // are perpendicular
- featureAngle 90;
-
- // Maximum number of snapping relaxation iterations. Should stop
- // before upon reaching a correct mesh.
- nRelaxIter 3;
-
- // Number of smoothing iterations of surface normals
- nSmoothSurfaceNormals 1;
-
- // Number of smoothing iterations of interior mesh movement direction
- nSmoothNormals 3;
-
- // Smooth layer thickness over surface patches
- nSmoothThickness 10;
-
- // Stop layer growth on highly warped cells
- maxFaceThicknessRatio 1000;
-
- // Reduce layer growth where ratio thickness to medial
- // distance is large
- maxThicknessToMedialRatio 0.3;
-
- // Angle used to pick up medial axis points
- // Note: changed(corrected) w.r.t 17x! 90 degrees corresponds to 130 in 17x.
- minMedianAxisAngle 90;
-
-
- // Create buffer region for new layer terminations
- nBufferCellsNoExtrude 0;
-
-
- // Overall max number of layer addition iterations. The mesher will exit
- // if it reaches this number of iterations; possibly with an illegal
- // mesh.
- nLayerIter 50;
-}
-
-
-
-meshQualityControls
-{
- // Generic mesh quality settings. At any undoable phase these determine
- // where to undo.
- #include "meshQualityDict"
-
- //- Number of error distribution iterations
- nSmoothScale 4;
- //- amount to scale back displacement at error points
- errorReduction 0.75;
-}
-
-
-// Advanced
-
-// Flags for optional output
-// 0 : only write final meshes
-// 1 : write intermediate meshes
-// 2 : write volScalarField with cellLevel for postprocessing
-// 4 : write current intersections as .obj files
-debug 0;
-
-
-// Merge tolerance. Is fraction of overall bounding box of initial mesh.
-// Note: the write tolerance needs to be higher than this.
-mergeTolerance 1e-6;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/surfaceFeatureExtractDict b/tutorials/mesh/cvMesh/flange/system/surfaceFeatureExtractDict
deleted file mode 100644
index 520df11958ba69a71cf8b55c16a97653b883cdd3..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/surfaceFeatureExtractDict
+++ /dev/null
@@ -1,38 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object surfaceFeatureExtractDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-flange.obj
-{
- extractionMethod extractFromSurface;
-
- extractFromSurfaceCoeffs
- {
- // Mark edges whose adjacent surface normals are at an angle less
- // than includedAngle as features
- // - 0 : selects no edges
- // - 180: selects all edges
- includedAngle 100;
- }
-
-
- // Write options
-
- // Write features to obj format for postprocessing
- writeObj yes;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/topoSetDict-background b/tutorials/mesh/cvMesh/flange/system/topoSetDict-background
deleted file mode 100644
index 03ae10303e7b0724ba72c8fce5db5ae5611aafe3..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/topoSetDict-background
+++ /dev/null
@@ -1,319 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object topoSetDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-// List of actions. Each action is a dictionary with e.g.
-// // name of set
-// name c0;
-//
-// // type: pointSet/faceSet/cellSet/faceZoneSet/cellZoneSet
-// type cellSet;
-//
-// // action to perform on set. Two types:
-// // - require no source : clear/invert
-// // - require source : new/add/delete/subset
-// action new;
-//
-// The source entry varies according to the type of set:
-//
-// cellSet
-// ~~~~~~~
-//
-// // Select by explicitly providing cell labels
-// source labelToCell;
-// {
-// value (12 13 56); // labels of cells
-// }
-//
-// // Copy elements from cellSet
-// source cellToCell;
-// {
-// set c1;
-// }
-//
-// // Cells in cell zone
-// source zoneToCell;
-// {
-// name ".*Zone"; // Name of cellZone, regular expressions allowed
-// }
-//
-// // Cells on master or slave side of faceZone
-// source faceZoneToCell;
-// {
-// name ".*Zone"; // Name of faceZone, regular expressions allowed
-// option master; // master/slave
-// }
-//
-// // Select based on faceSet
-// source faceToCell;
-// {
-// set f0; // Name of faceSet
-//
-// //option neighbour; // cell with neighbour in faceSet
-// //option owner; // ,, owner
-// option any; // cell with any face in faceSet
-// //option all; // cell with all faces in faceSet
-// }
-//
-// // Select based on pointSet
-// source pointToCell;
-// {
-// set p0;
-// option any; // cell with any point in pointSet
-// //option all; // cell with all points in pointSet
-// }
-//
-// // Select based on cellShape
-// source shapeToCell;
-// {
-// type hex; // hex/wedge/prism/pyr/tet/tetWedge/splitHex
-// }
-//
-// // Cells with cell centre within box
-// source boxToCell;
-// {
-// box (0 0 0) (1 1 1);
-// }
-//
-// // Cells with cell centre within box
-// // Is skewed, rotated box. Given as origin and three spanning vectors.
-// source rotatedBoxToCell;
-// {
-// origin (0.2 0.2 -10);
-// i (0.2 0.2 0);
-// j (-0.2 0.2 0);
-// k (10 10 10);
-// }
-//
-// // Cells with centre within cylinder
-// source cylinderToCell;
-// {
-// p1 (0.2 0.2 -10); // start point on cylinder axis
-// p2 (0.2 0.2 0); // end point on cylinder axis
-// radius 5.0;
-// }
-//
-// // Cells with centre within sphere
-// source sphereToCell;
-// {
-// centre (0.2 0.2 -10);
-// radius 5.0;
-// }
-//
-// // Cells with cellCentre nearest to coordinates
-// source nearestToCell;
-// {
-// points ((0 0 0) (1 1 1)(2 2 2));
-// }
-//
-// // Select based on surface
-// source surfaceToCell;
-// {
-// file "www.avl.com-geometry.stl";
-// outsidePoints ((-99 -99 -59)); // definition of outside
-// includeCut false; // cells cut by surface
-// includeInside false; // cells not on outside of surf
-// includeOutside false; // cells on outside of surf
-// nearDistance -1; // cells with centre near surf
-// // (set to -1 if not used)
-// curvature 0.9; // cells within nearDistance
-// // and near surf curvature
-// // (set to -100 if not used)
-// }
-//
-// // values of field within certain range
-// source fieldToCell;
-// {
-// fieldName U; // Note: uses mag(U) since volVectorField
-// min 0.1;
-// max 0.5;
-// }
-//
-// // Mesh region (non-face connected part of (subset of)mesh)
-// source regionToCell;
-// {
-// set c0; // name of cellSet giving mesh subset
-// insidePoint (1 2 3); // point inside region to select
-// }
-//
-//
-//
-// faceSet
-// ~~~~~~~
-//
-// // Copy elements from faceSet
-// source faceToFace;
-// {
-// set f1;
-// }
-//
-// // Select based on cellSet
-// source cellToFace;
-// {
-// set c0;
-// option all; // All faces of cells
-// //option both; // Only faces whose owner&neighbour are in cellSet
-// }
-//
-// // Select based on pointSet
-// source pointToFace;
-// {
-// set p0;
-// option any; // Faces using any point in pointSet
-// //option all // Faces with all points in pointSet
-// }
-//
-// // Select by explicitly providing face labels
-// source labelToFace;
-// {
-// value (12 13 56); // labels of faces
-// }
-//
-// // All faces of patch
-// source patchToFace;
-// {
-// name ".*Wall"; // Name of patch, regular expressions allowed
-// }
-//
-// // All faces of faceZone
-// source zoneToFace;
-// {
-// name ".*Zone1"; // Name of faceZone, regular expressions allowed
-// }
-//
-// // Faces with face centre within box
-// source boxToFace;
-// {
-// box (0 0 0) (1 1 1);
-// }
-//
-// // Faces with normal to within certain angle aligned with vector.
-// source normalToFace;
-// {
-// normal (0 0 1); // Vector
-// cos 0.01; // Tolerance (max cos of angle)
-// }
-//
-//
-//
-// pointSet
-// ~~~~~~~
-//
-// // Copy elements from pointSet
-// source pointToPoint;
-// {
-// set p1;
-// }
-//
-// // Select based on cellSet
-// source cellToPoint;
-// {
-// set c0;
-// option all; // all points of cell
-// }
-//
-// // Select based on faceSet
-// source faceToPoint;
-// {
-// set f0; // name of faceSet
-// option all; // all points of face
-// }
-//
-// // Select by explicitly providing point labels
-// source labelToPoint;
-// {
-// value (12 13 56); // labels of points
-// }
-//
-// // All points in pointzone
-// source zoneToPoint;
-// {
-// name ".*Zone"; // name of pointZone, regular expressions allowed
-// }
-//
-// // Points nearest to coordinates
-// source nearestToPoint;
-// {
-// points ((0 0 0) (1 1 1));
-// }
-//
-// // Points with coordinate within box
-// source boxToPoint;
-// {
-// box (0 0 0) (1 1 1);
-// }
-//
-// // Select based on surface
-// source surfaceToPoint;
-// {
-// file "www.avl.com-geometry.stl";
-// nearDistance 0.1; // points near to surface
-// includeInside false; // points on inside of surface
-// // (requires closed surface with consistent
-// // normals)
-// includeOutside false; // ,, outside ,,
-// }
-//
-//
-//
-//
-// cellZoneSet
-// ~~~~~~~~~~~
-// (mirrors operations on a cellSet into a cellZone)
-//
-// // Select based on cellSet
-// source setToCellZone;
-// {
-// set c0; // name of cellSet
-// }
-//
-//
-//
-// faceZoneSet
-// ~~~~~~~~~~~
-// // Select based on faceSet without orientation
-// source setToFaceZone;
-// {
-// set f0; // name of faceSet
-// }
-//
-// // Select based on faceSet, using cellSet to determine orientation
-// source setsToFaceZone;
-// {
-// faceSet f0; // name of faceSet
-// cellSet c0; // name of cellSet of slave side
-// }
-
-actions
-(
- {
- name background;
- type cellSet;
- action new;
- source surfaceToCell;
- sourceInfo
- {
- file "constant/triSurface/flange.obj";
- outsidePoints ((-0.026 -0.0275 -0.0235));
- includeCut true;
- includeInside true;
- includeOutside false;
- nearDistance -1;
- curvature -100;
- }
- }
-);
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/flange/system/topoSetDict-slices b/tutorials/mesh/cvMesh/flange/system/topoSetDict-slices
deleted file mode 100644
index 2b158377884d20598c8b95069b483b7a5c9b739b..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/flange/system/topoSetDict-slices
+++ /dev/null
@@ -1,152 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object topoSetDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-zSlice -0.009;
-ySlice 0.0;
-xSlice 0.0;
-
-actions
-(
- {
- name z;
- type cellSet;
- action new;
- source boxToCell;
- sourceInfo
- {
- box (-100 -100 $zSlice)(100 100 100);
- }
- }
-
- {
- name zf;
- type faceSet;
- action new;
- source cellToFace;
- sourceInfo
- {
- set z;
- option all;
- }
- }
-
- {
- name z;
- type cellSet;
- action invert;
- }
-
- {
- name zf;
- type faceSet;
- action subset;
- source cellToFace;
- sourceInfo
- {
- set z;
- option all;
- }
- }
-
- // ~~~~~~~~~~~~~~~~ //
-
- {
- name y;
- type cellSet;
- action new;
- source boxToCell;
- sourceInfo
- {
- box (-100 $ySlice -100)(100 100 100);
- }
- }
-
- {
- name yf;
- type faceSet;
- action new;
- source cellToFace;
- sourceInfo
- {
- set y;
- option all;
- }
- }
-
- {
- name y;
- type cellSet;
- action invert;
- }
-
- {
- name yf;
- type faceSet;
- action subset;
- source cellToFace;
- sourceInfo
- {
- set y;
- option all;
- }
- }
-
- // ~~~~~~~~~~~~~~~~ //
-
- {
- name x;
- type cellSet;
- action new;
- source boxToCell;
- sourceInfo
- {
- box ($xSlice -100 -100)(100 100 100);
- }
- }
-
- {
- name xf;
- type faceSet;
- action new;
- source cellToFace;
- sourceInfo
- {
- set x;
- option all;
- }
- }
-
- {
- name x;
- type cellSet;
- action invert;
- }
-
- {
- name xf;
- type faceSet;
- action subset;
- source cellToFace;
- sourceInfo
- {
- set x;
- option all;
- }
- }
-);
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/simpleShapes/Allclean b/tutorials/mesh/cvMesh/simpleShapes/Allclean
deleted file mode 100755
index 5361756c0d83d2cb6bf35f75930d4b625fd7d142..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/Allclean
+++ /dev/null
@@ -1,18 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/CleanFunctions
-
-rm -r constant/extendedFeatureEdgeMesh constant/internalDelaunayVertices > /dev/null 2>&1
-rm constant/triSurface/*.eMesh > /dev/null 2>&1
-rm constant/triSurface/*_clean* > /dev/null 2>&1
-rm -r constant/polyMesh > /dev/null 2>&1
-rm constant/targetCellSize > /dev/null 2>&1
-rm -r constant/tetDualMesh > /dev/null 2>&1
-
-rm domain coneAndSphere > /dev/null 2>&1
-
-cleanCase
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/simpleShapes/Allrun b/tutorials/mesh/cvMesh/simpleShapes/Allrun
deleted file mode 100755
index c37109987b9f66122fdddb9d394a3ccaea0e059a..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/Allrun
+++ /dev/null
@@ -1,43 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1 # run from this directory
-
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-# Remove any small triangles (edges < 1e-4, sliver with Q < 1e-6) from surface
-# (cvMesh will try to conform to every feature).
-runApplication surfaceClean \
- constant/triSurface/coneAndSphere.obj \
- 1e-4 1e-6 \
- constant/triSurface/coneAndSphere_clean.obj
-mv log.surfaceClean log.surfaceClean.coneAndSphere
-# Orient so point to be meshed is inside surface
-runApplication surfaceOrient \
- constant/triSurface/coneAndSphere_clean.obj \
- -inside '(0 -0.5 0)' \
- constant/triSurface/coneAndSphere_clean_orient.obj
-mv log.surfaceOrient log.surfaceOrient.coneAndSphere
-
-# Same for outside
-runApplication surfaceClean \
- constant/triSurface/domain.stl \
- 1e-4 1e-6 \
- constant/triSurface/domain_clean.stl
-mv log.surfaceClean log.surfaceClean.domain
-runApplication surfaceOrient \
- constant/triSurface/domain_clean.stl \
- -inside '(0 -0.5 0)' \
- constant/triSurface/domain_clean_orient.stl
-mv log.surfaceOrient log.surfaceOrient.domain
-
-unset FOAM_SIGFPE
-runApplication surfaceFeatureExtract
-
-# Generate aligned points (in constant/internalDelaunayVertices) and a
-# mesh from that.
-runApplication cvMesh
-
-# Generate some sets for a bit of mesh inspection
-runApplication topoSet -time 0:100
-
-# ----------------------------------------------------------------- end-of-file
diff --git a/tutorials/mesh/cvMesh/simpleShapes/constant/triSurface/cone.stl b/tutorials/mesh/cvMesh/simpleShapes/constant/triSurface/cone.stl
deleted file mode 100644
index 98e4698edbb223cbe7ea60d269b901911fdcd368..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/constant/triSurface/cone.stl
+++ /dev/null
@@ -1,828 +0,0 @@
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- facet normal 0.221288 -0.112752 -0.968668
- outer loop
- vertex 0.731344 0.204573 -0.472909
- vertex 0.678269 0.274569 -0.493181
- vertex 0.754404 0.249831 -0.472909
- endloop
- endfacet
- facet normal 0.2453 -0.0388517 0.968668
- outer loop
- vertex 0.678269 0.274569 0.493181
- vertex 0.754404 0.249831 0.472909
- vertex 0.76235 0.3 0.472909
- endloop
- endfacet
- facet normal 0.2453 -0.0388516 0.968668
- outer loop
- vertex 0.678269 0.274569 0.493181
- vertex 0.76235 0.3 0.472909
- vertex 0.682297 0.3 0.493181
- endloop
- endfacet
- facet normal 0.400885 -0.0634941 0.913926
- outer loop
- vertex 0.754404 0.249831 0.472909
- vertex 0.826326 0.226462 0.439737
- vertex 0.837974 0.3 0.439737
- endloop
- endfacet
- facet normal 0.400885 -0.0634939 0.913926
- outer loop
- vertex 0.754404 0.249831 0.472909
- vertex 0.837974 0.3 0.439737
- vertex 0.76235 0.3 0.472909
- endloop
- endfacet
- facet normal 0.544907 -0.0863045 0.834043
- outer loop
- vertex 0.826326 0.226462 0.439737
- vertex 0.892076 0.205099 0.39457
- vertex 0.907106 0.3 0.39457
- endloop
- endfacet
- facet normal 0.544907 -0.0863051 0.834043
- outer loop
- vertex 0.826326 0.226462 0.439737
- vertex 0.907106 0.3 0.39457
- vertex 0.837974 0.3 0.439737
- endloop
- endfacet
- facet normal 0.673418 -0.106659 0.731527
- outer loop
- vertex 0.892076 0.205099 0.39457
- vertex 0.949858 0.186324 0.338641
- vertex 0.967862 0.3 0.338641
- endloop
- endfacet
- facet normal 0.673418 -0.106659 0.731527
- outer loop
- vertex 0.892076 0.205099 0.39457
- vertex 0.967862 0.3 0.338641
- vertex 0.907106 0.3 0.39457
- endloop
- endfacet
- facet normal 0.783048 -0.124023 0.609471
- outer loop
- vertex 0.949858 0.186324 0.338641
- vertex 0.998096 0.170651 0.273474
- vertex 1.01858 0.3 0.273474
- endloop
- endfacet
- facet normal 0.783048 -0.124022 0.609471
- outer loop
- vertex 0.949858 0.186324 0.338641
- vertex 1.01858 0.3 0.273474
- vertex 0.967862 0.3 0.338641
- endloop
- endfacet
- facet normal 0.871064 -0.137963 0.471396
- outer loop
- vertex 0.998096 0.170651 0.273474
- vertex 1.03548 0.158505 0.200848
- vertex 1.05789 0.3 0.200848
- endloop
- endfacet
- facet normal 0.871064 -0.137963 0.471396
- outer loop
- vertex 0.998096 0.170651 0.273474
- vertex 1.05789 0.3 0.200848
- vertex 1.01858 0.3 0.273474
- endloop
- endfacet
- facet normal 0.93538 -0.14815 0.321116
- outer loop
- vertex 1.03548 0.158505 0.200848
- vertex 1.06098 0.15022 0.122743
- vertex 1.0847 0.3 0.122743
- endloop
- endfacet
- facet normal 0.93538 -0.14815 0.321115
- outer loop
- vertex 1.03548 0.158505 0.200848
- vertex 1.0847 0.3 0.122743
- vertex 1.05789 0.3 0.200848
- endloop
- endfacet
- facet normal 0.974541 -0.154352 0.162623
- outer loop
- vertex 1.06098 0.15022 0.122743
- vertex 1.0739 0.146019 0.0412897
- vertex 1.09829 0.3 0.0412897
- endloop
- endfacet
- facet normal 0.974541 -0.154352 0.162622
- outer loop
- vertex 1.06098 0.15022 0.122743
- vertex 1.09829 0.3 0.0412897
- vertex 1.0847 0.3 0.122743
- endloop
- endfacet
- facet normal 0.987688 -0.156434 0
- outer loop
- vertex 1.0739 0.146019 0.0412897
- vertex 1.0739 0.146019 -0.0412897
- vertex 1.09829 0.3 -0.0412897
- endloop
- endfacet
- facet normal 0.987688 -0.156434 0
- outer loop
- vertex 1.0739 0.146019 0.0412897
- vertex 1.09829 0.3 -0.0412897
- vertex 1.09829 0.3 0.0412897
- endloop
- endfacet
- facet normal 0.974541 -0.154352 -0.162623
- outer loop
- vertex 1.0739 0.146019 -0.0412897
- vertex 1.06098 0.15022 -0.122743
- vertex 1.0847 0.3 -0.122743
- endloop
- endfacet
- facet normal 0.974541 -0.154352 -0.162622
- outer loop
- vertex 1.0739 0.146019 -0.0412897
- vertex 1.0847 0.3 -0.122743
- vertex 1.09829 0.3 -0.0412897
- endloop
- endfacet
- facet normal 0.93538 -0.148149 -0.321116
- outer loop
- vertex 1.06098 0.15022 -0.122743
- vertex 1.03548 0.158505 -0.200848
- vertex 1.05789 0.3 -0.200848
- endloop
- endfacet
- facet normal 0.93538 -0.14815 -0.321117
- outer loop
- vertex 1.06098 0.15022 -0.122743
- vertex 1.05789 0.3 -0.200848
- vertex 1.0847 0.3 -0.122743
- endloop
- endfacet
- facet normal 0.871064 -0.137962 -0.471396
- outer loop
- vertex 1.03548 0.158505 -0.200848
- vertex 0.998096 0.170651 -0.273474
- vertex 1.01858 0.3 -0.273474
- endloop
- endfacet
- facet normal 0.871064 -0.137963 -0.471396
- outer loop
- vertex 1.03548 0.158505 -0.200848
- vertex 1.01858 0.3 -0.273474
- vertex 1.05789 0.3 -0.200848
- endloop
- endfacet
- facet normal 0.783048 -0.124022 -0.609471
- outer loop
- vertex 0.998096 0.170651 -0.273474
- vertex 0.949858 0.186324 -0.338641
- vertex 0.967862 0.3 -0.338641
- endloop
- endfacet
- facet normal 0.783048 -0.124022 -0.60947
- outer loop
- vertex 0.998096 0.170651 -0.273474
- vertex 0.967862 0.3 -0.338641
- vertex 1.01858 0.3 -0.273474
- endloop
- endfacet
- facet normal 0.673418 -0.106659 -0.731527
- outer loop
- vertex 0.949858 0.186324 -0.338641
- vertex 0.892075 0.205099 -0.39457
- vertex 0.907106 0.3 -0.39457
- endloop
- endfacet
- facet normal 0.673418 -0.106659 -0.731527
- outer loop
- vertex 0.949858 0.186324 -0.338641
- vertex 0.907106 0.3 -0.39457
- vertex 0.967862 0.3 -0.338641
- endloop
- endfacet
- facet normal 0.544908 -0.0863047 -0.834043
- outer loop
- vertex 0.892075 0.205099 -0.39457
- vertex 0.826326 0.226462 -0.439737
- vertex 0.837974 0.3 -0.439737
- endloop
- endfacet
- facet normal 0.544907 -0.0863049 -0.834043
- outer loop
- vertex 0.892075 0.205099 -0.39457
- vertex 0.837974 0.3 -0.439737
- vertex 0.907106 0.3 -0.39457
- endloop
- endfacet
- facet normal 0.400885 -0.0634939 -0.913926
- outer loop
- vertex 0.826326 0.226462 -0.439737
- vertex 0.754404 0.249831 -0.472909
- vertex 0.76235 0.3 -0.472909
- endloop
- endfacet
- facet normal 0.400885 -0.0634938 -0.913925
- outer loop
- vertex 0.826326 0.226462 -0.439737
- vertex 0.76235 0.3 -0.472909
- vertex 0.837974 0.3 -0.439737
- endloop
- endfacet
- facet normal 0.2453 -0.0388516 -0.968668
- outer loop
- vertex 0.754404 0.249831 -0.472909
- vertex 0.678269 0.274569 -0.493181
- vertex 0.682297 0.3 -0.493181
- endloop
- endfacet
- facet normal 0.2453 -0.0388517 -0.968668
- outer loop
- vertex 0.754404 0.249831 -0.472909
- vertex 0.682297 0.3 -0.493181
- vertex 0.76235 0.3 -0.472909
- endloop
- endfacet
-endsolid
diff --git a/tutorials/mesh/cvMesh/simpleShapes/system/collapseDict b/tutorials/mesh/cvMesh/simpleShapes/system/collapseDict
deleted file mode 100644
index 9034677ca9c28252bd5ecf19eb24095c33c763c9..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/system/collapseDict
+++ /dev/null
@@ -1,52 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object collapseDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-collapseEdgesCoeffs
-{
- minimumEdgeLength 1e-6;
- maximumMergeAngle 180;
- reductionFactor 0.5;
-}
-
-collapseFacesCoeffs
-{
- initialFaceLengthFactor 0.5;
- reductionFactor 0.5;
-
- allowEarlyCollapseToPoint on;
- allowEarlyCollapseCoeff 0.2;
- guardFraction 0.1;
- maxCollapseFaceToPointSideLengthCoeff 0.3;
-}
-
-meshQualityCoeffs
-{
- #include "meshQualityDict";
- maximumIterations 30;
- maximumSmoothingIterations 1;
- maxPointErrorCount 5;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/simpleShapes/system/controlDict b/tutorials/mesh/cvMesh/simpleShapes/system/controlDict
deleted file mode 100644
index 8bbced6c67a446eef989729934ebaa162998c034..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/system/controlDict
+++ /dev/null
@@ -1,54 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object controlDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-startFrom latestTime;
-
-startTime 0;
-
-stopAt endTime;
-
-endTime 80;
-
-deltaT 1;
-
-writeControl timeStep;
-
-writeInterval 80; // 10 to see the meshing steps
-
-purgeWrite 0;
-
-writeFormat ascii;
-
-writePrecision 10;
-
-writeCompression uncompressed;
-
-timeFormat general;
-
-timePrecision 6;
-
-runTimeModifiable yes;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/simpleShapes/system/cvMeshDict b/tutorials/mesh/cvMesh/simpleShapes/system/cvMeshDict
deleted file mode 100644
index 99379e62c9399731eb8f9949bfcf84f4daf669cc..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/system/cvMeshDict
+++ /dev/null
@@ -1,371 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object cvMeshDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-
-/*
-
-Control dictionary for cvMesh - polyhedral mesh generator.
-
-cvMesh phases:
-1. fill volume with initial points (initialPoints subdictionary). An option
- is to reread from previous set of points.
-
-2. internal point motion (motionControl subdictionary)
-
-3. every once in a while add point duplets/triplets to conform to
- surfaces and features (surfaceConformation subdictionary)
-
-4. back to 2
-
-5. construct polyMesh.
- - filter (polyMeshFiltering subdictionary)
- - check (meshQualityControls subdictionary) and undo filtering
-
-
-See also cvControls.H in the conformalVoronoiMesh library
-
-*/
-
-
-// Important:
-// ----------
-// Any scalar with a name <name>Coeff specifies a value that will be implemented
-// as a faction of the local target cell size
-// Any scalar with a name <name>Size specifies an absolute size.
-
-
-// Geometry. Definition of all surfaces. All surfaces are of class
-// searchableSurface.
-// Surfaces need to be (almost) closed - use closedTriSurfaceMesh
-// if they are not topologically closed. Surfaces need to be oriented so
-// the space to be meshed is always on the inside of all surfaces. Use e.g.
-// surfaceOrient.
-geometry
-{
- // Internal shape
- coneAndSphere_clean_orient.obj
- {
- name coneAndSphere;
- type triSurfaceMesh;
- }
-
- // Outside of domain
- domain_clean_orient.stl
- {
- name domain;
- type triSurfaceMesh;
- }
-
-}
-
-
-// Controls for conforming to the surfaces.
-surfaceConformation
-{
- // A point inside surfaces that is inside mesh.
- locationInMesh (0 -0.5 0);
-
- // How far apart are point-duplets generated. Balance this between
- // - very low distance: little chance of interference from other
- // surfaces
- // - largish distance: less non-orthogonality in final cell
- // (circumcentre far away from centroid)
- pointPairDistanceCoeff 0.1;
-
- // Mixed feature edges - both inside and outside edges. Recreated
- // by inserting triplets of points to recreate a single edge. Done for
- // all edges emanating from point. triplets of points get inserted
- // mixedFeaturePointPPDistanceCoeff distance away from feature point.
- mixedFeaturePointPPDistanceCoeff 5.0;
-
- // Distance to a feature point within which surface and edge
- // conformation points are excluded - fraction of the local target
- // cell size
- featurePointExclusionDistanceCoeff 0.6;
-
- // Distance to an existing feature edge conformation location
- // within which other edge conformation location are excluded -
- // fraction of the local target cell size
- featureEdgeExclusionDistanceCoeff 0.6;
-
- // Optimisation: do not check for surface intersection (of dual edges)
- // for points near to surface.
- surfaceSearchDistanceCoeff 2.5;
-
- // Maximum allowable protrusion through the surface before
- // conformation points are added - fraction of the local target
- // cell size. These small protusions are (hopefully) done by mesh filtering
- // instead.
- maxSurfaceProtrusionCoeff 0.1;
-
- // If feature edge with large angle (so more than 125 degrees) introduce
- // additional points to create two half angled cells (= mitering).
- maxQuadAngle 125;
-
- // Frequency to redo surface conformation (expensive).
- surfaceConformationRebuildFrequency 10;
-
- // Specialised feature point handling
- specialiseFeaturePoints on;
-
- // Initial and intermediate controls
- conformationControls
- {
- // We've got a point poking through the surface. Don't do any
- // surface conformation if near feature edge (since feature edge
- // conformation should have priority)
-
- // distance to search for near feature edges
- edgeSearchDistCoeff 2;
-
- // Proximity to a feature edge where a surface hit is
- // not created, only the edge conformation is created
- // - fraction of the local target cell size. Coarse
- // conformation, initial protrusion tests.
- surfacePtReplaceDistCoeff 0.5;
-
-
- surfacePtExclusionDistanceCoeff 0.5;
-
- // Stop either at maxIterations or if the number of surface pokes
- // is very small (iterationToInitialHitRatioLimit * initial number)
- // Note: perhaps iterationToInitialHitRatioLimit should be absolute
- // count?
- maxIterations 15;
-
- iterationToInitialHitRatioLimit 0.001;
- }
-
- // Geometry to mesh to
- geometryToConformTo
- {
- coneAndSphere
- {
- featureMethod extendedFeatureEdgeMesh;
- extendedFeatureEdgeMesh "coneAndSphere_clean_orient.extendedFeatureEdgeMesh";
- }
-
- domain
- {
- featureMethod extendedFeatureEdgeMesh;
- extendedFeatureEdgeMesh "domain_clean_orient.extendedFeatureEdgeMesh";
- }
- }
-
- additionalFeatures {}
-}
-
-
-// Controls for seeding initial points and general control of the target
-// cell size (used everywhere)
-initialPoints
-{
- // Do not place point closer than minimumSurfaceDistanceCoeff
- // to the surface. Is fraction of local target cell size (see below)
- minimumSurfaceDistanceCoeff 0.55;
-
- initialPointsMethod autoDensity;
- // initialPointsMethod uniformGrid;
- // initialPointsMethod bodyCentredCubic;
- // initialPointsMethod pointFile;
-
- // Take boundbox of all geometry. Samples with this box. If too much
- // samples (due to target cell size) in box split box.
- autoDensityCoeffs
- {
- minCellSizeLimit 0.1;
- // Initial number of refinement levels. Needs to be enough to pick
- // up features due to size ratio. If not enough it will take longer
- // to determine point seeding.
- minLevels 4;
- // Split box if ratio of min to max cell size larger than maxSizeRatio
- maxSizeRatio 5.0;
- // Per box sample 3x3x3 internally
- sampleResolution 3;
- // Additionally per face of the box sample 3
- surfaceSampleResolution 3;
- }
-
- uniformGridCoeffs
- {
- // Absolute cell size.
- initialCellSize 0.0015;
- randomiseInitialGrid yes;
- randomPerturbationCoeff 0.02;
- }
-
- bodyCentredCubicCoeffs
- {
- initialCellSize 0.0015;
- randomiseInitialGrid no;
- randomPerturbationCoeff 0.1;
- }
-
- pointFileCoeffs
- {
- // Reads points from file. Still rejects points that are too
- // close to the surface (minimumSurfaceDistanceCoeff) or on the
- // wrong side of the surfaces.
- pointFile "constant/internalDelaunayVertices";
- }
-}
-
-
-// Control size of voronoi cells i.e. distance between points. This
-// determines the target cell size which is used everywhere.
-// It determines the cell size given a location. It then uses all
-// the rules
-// - defaultCellSize
-// - cellSizeControlGeometry
-// to determine target cell size. Rule with highest priority wins. If same
-// priority smallest cell size wins.
-motionControl
-{
- // Absolute cell size of back ground mesh. This is the maximum cell size.
- defaultCellSize 0.1;
-
- shapeControlFunctions
- {
- coneAndSphere
- {
- type searchableSurfaceControl;
- priority 1;
- mode bothSides;
-
- surfaceCellSizeFunction uniformValue;
- uniformValueCoeffs
- {
- surfaceCellSize 0.075;
- }
-
- cellSizeFunction uniform;
- uniformCoeffs
- {}
- }
-
- domain
- {
- type searchableSurfaceControl;
- priority 1;
- mode bothSides;
-
- surfaceCellSizeFunction uniformValue;
- uniformValueCoeffs
- {
- surfaceCellSize $defaultCellSize;
- }
-
- cellSizeFunction uniform;
- uniformCoeffs
- {}
- }
- }
-
- cellAspectRatioControl
- {
- aspectRatio 1.0;
- aspectRatioDirection (0 0 0);
- }
-
- // Underrelaxation for point motion. Simulated annealing: starts off at 1
- // and lowers to 0 (at simulation endTime) to converge points.
- // adaptiveLinear is preferred choice.
- // Points move by e.g. 10% of tet size.
- relaxationModel adaptiveLinear; //rampHoldFall
-
- adaptiveLinearCoeffs
- {
- relaxationStart 1.0;
- relaxationEnd 0.0;
- }
-
- // Output lots and lots of .obj files
- objOutput no;
-
- // Timing and memory usage.
- timeChecks no;
-
- // Number of rays in plane parallel to nearest surface. Used to detect
- // next closest surfaces. Used to work out alignment (three vectors)
- // to surface.
- // Note that only the initial points (from the seeding) calculate this
- // information so if these are not fine enough the alignment will
- // not be correct. (any points added during the running will lookup
- // this information from the nearest initial point since it is
- // expensive)
- alignmentSearchSpokes 36;
-
- // For each delaunay edge (between two vertices, becomes
- // the Voronoi face normal) snap to the alignment direction if within
- // alignmentAcceptanceAngle. Slightly > 45 is a good choice - prevents
- // flipping.
- alignmentAcceptanceAngle 48;
-
- // How often to rebuild the alignment info (expensive)
- sizeAndAlignmentRebuildFrequency 20;
-
- // When to insert points. Not advisable change to
- // these settings.
- pointInsertionCriteria
- {
- // If edge larger than 1.75 target cell size
- // (so tets too large/stretched) insert point
- cellCentreDistCoeff 1.75;
- // Do not insert point if voronoi face (on edge) very small.
- faceAreaRatioCoeff 0.0025;
- // Insert point only if edge closely aligned to local alignment
- // direction.
- acceptanceAngle 21.5;
- }
-
- // Opposite: remove point if mesh too compressed. Do not change these
- // settings.
- pointRemovalCriteria
- {
- cellCentreDistCoeff 0.65;
- }
-
- // How to determine the point motion. All edges got some direction.
- // Sum all edge contributions to determine point motion. Weigh by
- // face area so motion is preferentially determined by large faces
- // (or more importantly ignore contribution from small faces).
- // Do not change these settings.
- faceAreaWeightModel piecewiseLinearRamp;
-
- piecewiseLinearRampCoeffs
- {
- lowerAreaFraction 0.5;
- upperAreaFraction 1.0;
- }
-}
-
-
-// After simulation, when converting to polyMesh, filter out small faces/edges.
-// Do not change. See cvControls.H
-polyMeshFiltering
-{
- filterEdges on;
- filterFaces on;
- writeTetDualMesh false;
-}
-
-
-#include "meshQualityDict";
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/simpleShapes/system/fvSchemes b/tutorials/mesh/cvMesh/simpleShapes/system/fvSchemes
deleted file mode 100644
index d8d476c57fee0824977fcf92dc4d484653bd003b..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/system/fvSchemes
+++ /dev/null
@@ -1,55 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSchemes;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-d2dt2Schemes
-{
- default steadyState;
-}
-
-gradSchemes
-{
- default Gauss cubic;
-}
-
-divSchemes
-{
- default Gauss cubic;
-}
-
-laplacianSchemes
-{
- default Gauss linear uncorrected;
-}
-
-interpolationSchemes
-{
- default cubic;
-}
-
-snGradSchemes
-{
- default uncorrected;
-}
-
-fluxRequired
-{
- default no;
- D ;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/simpleShapes/system/fvSolution b/tutorials/mesh/cvMesh/simpleShapes/system/fvSolution
deleted file mode 100644
index 8dabfdac0a8192e197f0550d41b1691f1c3b68e6..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/system/fvSolution
+++ /dev/null
@@ -1,41 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- location "system";
- object fvSolution;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-solvers
-{
- "(D|Dcorr)"
- {
- solver GAMG;
- tolerance 1e-06;
- relTol 0.99;
- smoother GaussSeidel;
- cacheAgglomeration true;
- nCellsInCoarsestLevel 6;
- agglomerator faceAreaPair;
- mergeLevels 1;
- }
-}
-
-stressAnalysis
-{
- nCorrectors 1;
- D 1e-10;
- accelerationFactor 2;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/simpleShapes/system/meshQualityDict b/tutorials/mesh/cvMesh/simpleShapes/system/meshQualityDict
deleted file mode 100644
index 1b83e2bd87b647e97cf8b39d2dccbb30af267c8e..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/system/meshQualityDict
+++ /dev/null
@@ -1,73 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
- version 2.0;
- format ascii;
-
- root "";
- case "";
- instance "";
- local "";
-
- class dictionary;
- object meshQualityDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-//- Maximum non-orthogonality allowed. Set to 180 to disable.
-maxNonOrtho 65;
-
-//- Max skewness allowed. Set to <0 to disable.
-maxBoundarySkewness 50;
-maxInternalSkewness 10;
-
-//- Max concaveness allowed. Is angle (in degrees) below which concavity
-// is allowed. 0 is straight face, <0 would be convex face.
-// Set to 180 to disable.
-maxConcave 80;
-
-//- Minimum quality of the tet formed by the face-centre
-// and variable base point minimum decomposition triangles and
-// the cell centre. This has to be a positive number for tracking
-// to work. Set to very negative number (e.g. -1E30) to
-// disable.
-// <0 = inside out tet,
-// 0 = flat tet
-// 1 = regular tet
-minTetQuality 1e-30;
-
-//- Minimum pyramid volume. Is absolute volume of cell pyramid.
-// Set to a sensible fraction of the smallest cell volume expected.
-// Set to very negative number (e.g. -1E30) to disable.
-minVol 0;
-
-//- Minimum face area. Set to <0 to disable.
-minArea -1;
-
-//- Minimum face twist. Set to <-1 to disable. dot product of face normal
-//- and face centre triangles normal
-minTwist 0.001;
-
-//- minimum normalised cell determinant
-//- 1 = hex, <= 0 = folded or flattened illegal cell
-minDeterminant 0.001;
-
-//- minFaceWeight (0 -> 0.5)
-minFaceWeight 0.02;
-
-//- minVolRatio (0 -> 1)
-minVolRatio 0.01;
-
-//must be >0 for Fluent compatibility
-minTriangleTwist -1;
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/simpleShapes/system/surfaceFeatureExtractDict b/tutorials/mesh/cvMesh/simpleShapes/system/surfaceFeatureExtractDict
deleted file mode 100644
index 850a4ea41f48c278271672540d2f1eff0dd60b03..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/system/surfaceFeatureExtractDict
+++ /dev/null
@@ -1,57 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object surfaceFeatureExtractDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-coneAndSphere_clean_orient.obj
-{
- extractionMethod extractFromSurface;
-
- extractFromSurfaceCoeffs
- {
- // Mark edges whose adjacent surface normals are at an angle less
- // than includedAngle as features
- // - 0 : selects no edges
- // - 180: selects all edges
- includedAngle 125;
- }
-
- // Write options
-
- // Write features to obj format for postprocessing
- writeObj no;
-}
-
-
-domain_clean_orient.stl
-{
- extractionMethod extractFromSurface;
-
- extractFromSurfaceCoeffs
- {
- // Mark edges whose adjacent surface normals are at an angle less
- // than includedAngle as features
- // - 0 : selects no edges
- // - 180: selects all edges
- includedAngle 125;
- }
-
- // Write options
-
- // Write features to obj format for postprocessing
- writeObj no;
-}
-
-
-// ************************************************************************* //
diff --git a/tutorials/mesh/cvMesh/simpleShapes/system/topoSetDict b/tutorials/mesh/cvMesh/simpleShapes/system/topoSetDict
deleted file mode 100644
index 363fbd4fc15ac9b64be4c912371670f1c256f1f3..0000000000000000000000000000000000000000
--- a/tutorials/mesh/cvMesh/simpleShapes/system/topoSetDict
+++ /dev/null
@@ -1,148 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| ========= | |
-| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
-| \\ / O peration | Version: dev |
-| \\ / A nd | Web: www.OpenFOAM.org |
-| \\/ M anipulation | |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
- version 2.0;
- format ascii;
- class dictionary;
- object topoSetDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-actions
-(
- {
- name z;
- type cellSet;
- action new;
- source boxToCell;
- sourceInfo
- {
- box (-100 -100 0)(100 100 100);
- }
- }
-
- {
- name zf;
- type faceSet;
- action new;
- source cellToFace;
- sourceInfo
- {
- set z;
- option all;
- }
- }
-
- {
- name z;
- type cellSet;
- action invert;
- }
-
- {
- name zf;
- type faceSet;
- action subset;
- source cellToFace;
- sourceInfo
- {
- set z;
- option all;
- }
- }
-
- // ~~~~~~~~~~~~~~~~ //
-
- {
- name y;
- type cellSet;
- action new;
- source boxToCell;
- sourceInfo
- {
- box (-100 0.1 -100)(100 100 100);
- }
- }
-
- {
- name yf;
- type faceSet;
- action new;
- source cellToFace;
- sourceInfo
- {
- set y;
- option all;
- }
- }
-
- {
- name y;
- type cellSet;
- action invert;
- }
-
- {
- name yf;
- type faceSet;
- action subset;
- source cellToFace;
- sourceInfo
- {
- set y;
- option all;
- }
- }
-
- // ~~~~~~~~~~~~~~~~ //
-
- {
- name x;
- type cellSet;
- action new;
- source boxToCell;
- sourceInfo
- {
- box (0.3 -100 -100)(100 100 100);
- }
- }
-
- {
- name xf;
- type faceSet;
- action new;
- source cellToFace;
- sourceInfo
- {
- set x;
- option all;
- }
- }
-
- {
- name x;
- type cellSet;
- action invert;
- }
-
- {
- name xf;
- type faceSet;
- action subset;
- source cellToFace;
- sourceInfo
- {
- set x;
- option all;
- }
- }
-);
-
-// ************************************************************************* //