1. 07 May, 2018 1 commit
    • Mark Olesen's avatar
      ENH: improvements in the surface sampling infrastructure · b0648f2b
      Mark Olesen authored
      - improvement documentation for surface sampling.
      
      - can now specify alternative sampling scheme for obtaining the
        face values instead of just using the "cell" value. For example,
      
            sampleScheme    cellPoint;
      
        This can be useful for cases when the surface is close to a boundary
        cell and there are large gradients in the sampled field.
      
      - distanceSurface now handles non-closed surfaces more robustly.
        Unknown regions (not inside or outside) are marked internally and
        excluded from consideration. This allows use of 'signed' surfaces
        where not previously possible.
      b0648f2b
  2. 05 Mar, 2018 1 commit
    • Mark Olesen's avatar
      STYLE: use direct iteration for HashSet · 4fe8ed82
      Mark Olesen authored
      - The iterator for a HashSet dereferences directly to its key.
      
      - Eg,
      
            for (const label patchi : patchSet)
            {
                ...
            }
        vs.
            forAllConstIter(labelHashSet, patchSet, iter)
            {
                const label patchi = iter.key();
                ...
            }
      4fe8ed82
  3. 12 Apr, 2018 1 commit
    • Mark Olesen's avatar
      STYLE: reorder/refactor stream format options · 4cf932b2
      Mark Olesen authored
      - IOstreamOption class to encapsulate format, compression, version.
        This is ordered to avoid internal padding in the structure, which
        reduces several bytes of memory overhead for stream objects
        and other things using this combination of data.
      
        Byte-sizes:
            old  IOstream:48  PstreamBuffers:88  Time:928
            new  IOstream:24  PstreamBuffers:72  Time:904
      
      ====
      
      STYLE: remove support for deprecated uncompressed/compressed selectors
      
      In older versions, the system/controlDict used these types of
      specifications:
      
          writeCompression uncompressed;
          writeCompression compressed;
      
      As of DEC-2009, these were deprecated in favour of using normal switch
      names:
      
          writeCompression true;
          writeCompression false;
          writeCompression on;
          writeCompression off;
      
      Now removed these deprecated names and treat like any other unknown
      input and issue a warning. Eg,
      
         Unknown compression specifier 'compressed', assuming no compression
      
      ====
      
      STYLE: provide Enum of stream format names (ascii, binary)
      
      ====
      
      COMP: fixed incorrect IFstream construct in FIREMeshReader
      
      - spurious bool argument (presumably meant as uncompressed) was being
        implicitly converted to a versionNumber. Now caught by making
        IOstreamOption::versionNumber constructor explicit.
      
      - bad version specifier in changeDictionary
      4cf932b2
  4. 28 Mar, 2018 1 commit
  5. 26 Mar, 2018 1 commit
    • Mark Olesen's avatar
      STYLE: consistent lookupOrDefault template parameters · 36719bf5
      Mark Olesen authored
      - in many cases can just use lookupOrDefault("key", bool) instead of
        lookupOrDefault<bool> or lookupOrDefault<Switch> since reading a
        bool from an Istream uses the Switch(Istream&) anyhow
      
      STYLE: relocated Switch string names into file-local scope
      36719bf5
  6. 21 Mar, 2018 1 commit
  7. 22 Mar, 2018 1 commit
  8. 16 Mar, 2018 1 commit
    • Mark Olesen's avatar
      STYLE: more consistent use of dimensioned Zero · 2f86cdc7
      Mark Olesen authored
      - when constructing dimensioned fields that are to be zero-initialized,
        it is preferrable to use a form such as
      
            dimensionedScalar(dims, Zero)
            dimensionedVector(dims, Zero)
      
        rather than
      
            dimensionedScalar("0", dims, 0)
            dimensionedVector("zero", dims, vector::zero)
      
        This reduces clutter and also avoids any suggestion that the name of
        the dimensioned quantity has any influence on the field's name.
      
        An even shorter version is possible. Eg,
      
            dimensionedScalar(dims)
      
        but reduces the clarity of meaning.
      
      - NB: UniformDimensionedField is an exception to these style changes
        since it does use the name of the dimensioned type (instead of the
        regIOobject).
      2f86cdc7
  9. 14 Mar, 2018 1 commit
  10. 13 Mar, 2018 1 commit
    • Mark Olesen's avatar
      ENH: code reduction in PackedList, PackedBoolList (issue #751) · 5d1fb235
      Mark Olesen authored
      - eliminate iterators from PackedList since they were unused, had
        lower performance than direct access and added unneeded complexity.
      
      - eliminate auto-vivify for the PackedList '[] operator.
        The set() method provides any required auto-vivification and
        removing this ability from the '[]' operator allows for a lower
        when accessing the values. Replaced the previous cascade of iterators
        with simpler reference class.
      
      PackedBoolList:
      
      - (temporarily) eliminate logic and addition operators since
        these contained partially unclear semantics.
      
      - the new test() method tests the value of a single bit position and
        returns a bool without any ambiguity caused by the return type
        (like the get() method), nor the const/non-const access (like
        operator[] has). The name corresponds to what std::bitset uses.
      
      - more consistent use of PackedBoolList test(), set(), unset() methods
        for fewer operation and clearer code. Eg,
      
            if (list.test(index)) ...    |  if (list[index]) ...
            if (!list.test(index)) ...   |  if (list[index] == 0u) ...
            list.set(index);             |  list[index] = 1u;
            list.unset(index);           |  list[index] = 0u;
      
      - deleted the operator=(const labelUList&) and replaced with a setMany()
        method for more clarity about the intended operation and to avoid any
        potential inadvertent behaviour.
      5d1fb235
  11. 07 Mar, 2018 1 commit
    • Mark Olesen's avatar
      ENH: new bitSet class and improved PackedList class (closes #751) · bac943e6
      Mark Olesen authored
      - The bitSet class replaces the old PackedBoolList class.
        The redesign provides better block-wise access and reduced method
        calls. This helps both in cases where the bitSet may be relatively
        sparse, and in cases where advantage of contiguous operations can be
        made. This makes it easier to work with a bitSet as top-level object.
      
        In addition to the previously available count() method to determine
        if a bitSet is being used, now have simpler queries:
      
          - all()  - true if all bits in the addressable range are empty
          - any()  - true if any bits are set at all.
          - none() - true if no bits are set.
      
        These are faster than count() and allow early termination.
      
        The new test() method tests the value of a single bit position and
        returns a bool without any ambiguity caused by the return type
        (like the get() method), nor the const/non-const access (like
        operator[] has). The name corresponds to what std::bitset uses.
      
        The new find_first(), find_last(), find_next() methods provide a faster
        means of searching for bits that are set.
      
        This can be especially useful when using a bitSet to control an
        conditional:
      
        OLD (with macro):
      
            forAll(selected, celli)
            {
                if (selected[celli])
                {
                    sumVol += mesh_.cellVolumes()[celli];
                }
            }
      
        NEW (with const_iterator):
      
            for (const label celli : selected)
            {
                sumVol += mesh_.cellVolumes()[celli];
            }
      
            or manually
      
            for
            (
                label celli = selected.find_first();
                celli != -1;
                celli = selected.find_next()
            )
            {
                sumVol += mesh_.cellVolumes()[celli];
            }
      
      - When marking up contiguous parts of a bitset, an interval can be
        represented more efficiently as a labelRange of start/size.
        For example,
      
        OLD:
      
            if (isA<processorPolyPatch>(pp))
            {
                forAll(pp, i)
                {
                    ignoreFaces.set(i);
                }
            }
      
        NEW:
      
            if (isA<processorPolyPatch>(pp))
            {
                ignoreFaces.set(pp.range());
            }
      bac943e6
  12. 28 Feb, 2018 2 commits
  13. 05 Mar, 2018 1 commit
  14. 26 Feb, 2018 3 commits
    • Mark Olesen's avatar
    • Mark Olesen's avatar
      ENH: cleanup tmp class (issue #639) · 52b36f84
      Mark Olesen authored
      Improve alignment of its behaviour with std::shared_ptr
      
        - element_type typedef
        - swap, reset methods
      
      * additional reference access methods:
      
      cref()
          returns a const reference, synonymous with operator().
          This provides a more verbose alternative to using the '()' operator
          when that is desired.
      
              Mnemonic: a const form of 'ref()'
      
      constCast()
          returns a non-const reference, regardless if the underlying object
          itself is a managed pointer or a const object.
          This is similar to ref(), but more permissive.
      
              Mnemonic: const_cast<>
      
          Using the constCast() method greatly reduces the amount of typing
          and reading. And since the data type is already defined via the tmp
          template parameter, the type deduction is automatically known.
      
          Previously,
      
              const tmp<volScalarField>& tfld;
      
              const_cast<volScalarField&>(tfld()).rename("name");
              volScalarField& fld = const_cast<volScalarField&>(tfld());
      
          Now,
      
              tfld.constCast().rename("name");
              auto& fld = tfld.constCast();
      
      --
      
      BUG: attempts to move tmp value that may still be shared.
      
      - old code simply checked isTmp() to decide if the contents could be
        transfered. However, this means that the content of a shared tmp
        would be removed, leaving other instances without content.
      
      * movable() method checks that for a non-null temporary that is
        unique (not shared).
      52b36f84
    • Mark Olesen's avatar
      ENH: cleanup autoPtr class (issue #639) · 660f3e54
      Mark Olesen authored
      Improve alignment of its behaviour with std::unique_ptr
      
        - element_type typedef
        - release() method - identical to ptr() method
        - get() method to get the pointer without checking and without releasing it.
        - operator*() for dereferencing
      
      Method name changes
      
        - renamed rawPtr() to get()
        - renamed rawRef() to ref(), removed unused const version.
      
      Removed methods/operators
      
        - assignment from a raw pointer was deleted (was rarely used).
          Can be convenient, but uncontrolled and potentially unsafe.
          Do allow assignment from a literal nullptr though, since this
          can never leak (and also corresponds to the unique_ptr API).
      
      Additional methods
      
        - clone() method: forwards to the clone() method of the underlying
          data object with argument forwarding.
      
        - reset(autoPtr&&) as an alternative to operator=(autoPtr&&)
      
      STYLE: avoid implicit conversion from autoPtr to object type in many places
      
      - existing implementation has the following:
      
           operator const T&() const { return operator*(); }
      
        which means that the following code works:
      
             autoPtr<mapPolyMesh> map = ...;
             updateMesh(*map);    // OK: explicit dereferencing
             updateMesh(map());   // OK: explicit dereferencing
             updateMesh(map);     // OK: implicit dereferencing
      
        for clarity it may preferable to avoid the implicit dereferencing
      
      - prefer operator* to operator() when deferenced a return value
        so it is clearer that a pointer is involve and not a function call
        etc    Eg,   return *meshPtr_;  vs.  return meshPtr_();
      660f3e54
  15. 01 Mar, 2018 1 commit
    • Mark Olesen's avatar
      ENH: cleanup of ListOps, ListListOps. Adjustments to List, PackedList. · 15f72608
      Mark Olesen authored
      - relocated ListAppendEqOp and ListUniqueEqOp to ListOps::appendEqOp
        and ListOps::UniqueEqOp, respectively for better code isolation and
        documentation of purpose.
      
      - relocated setValues to ListOps::setValue() with many more
        alternative selectors possible
      
      - relocated createWithValues to ListOps::createWithValue
        for better code isolation. The default initialization value is itself
        now a default parameter, which allow for less typing.
      
        Negative indices in the locations to set are now silently ignored,
        which makes it possible to use an oldToNew mapping that includes
        negative indices.
      
      - additional ListOps::createWithValue taking a single position to set,
        available both in copy assign and move assign versions.
        Since a negative index is ignored, it is possible to combine with
        the output of List::find() etc.
      
      STYLE: changes for PackedList
      
      - code simplication in the PackedList iterators, including dropping
        the unused operator() on iterators, which is not available in plain
        list versions either.
      
      - improved sizing for PackedBoolList creation from a labelUList.
      
      ENH: additional List constructors, for handling single element list.
      
      - can assist in reducing constructor ambiguity, but can also helps
        memory optimization when creating a single element list.
        For example,
      
          labelListList labels(one(), identity(mesh.nFaces()));
      15f72608
  16. 21 Feb, 2018 1 commit
  17. 08 Feb, 2018 1 commit
  18. 30 Jan, 2018 2 commits
  19. 17 Jan, 2018 1 commit
  20. 27 Dec, 2017 1 commit
  21. 30 Nov, 2017 1 commit
  22. 13 Nov, 2017 2 commits
  23. 07 Nov, 2017 2 commits
  24. 06 Dec, 2017 1 commit
  25. 20 Nov, 2017 1 commit
  26. 19 Nov, 2017 2 commits
  27. 16 Nov, 2017 1 commit
  28. 21 Sep, 2017 2 commits
  29. 22 Sep, 2017 1 commit
  30. 29 Aug, 2017 1 commit
    • mattijs's avatar
      BUG: sampledTriSurfaceMesh: sampling outside of mesh. Fixes #575. · 0e7954c2
      mattijs authored
      There are a few issues:
      - error would only throw exceptions if not parallel
      - if we change this we also need to make sure the functionObjectList
        construction is synchronised
      - bounding box overlap was not returning the correct status so the code
        to avoid the issue of 'badly formed bounding box' was not triggered.
      0e7954c2
  31. 17 Aug, 2017 1 commit
  32. 11 Aug, 2017 1 commit