TUT: cleanup compressible tutorials

See merge request !337

 - for all tutorial cases:
     - correct/uniformize dict-style
     - rm redundant dict entries

 - compressible.overRhoPimpleDyMFoam.twoSimpleRotors: rm redundant file: pointDisplacement
 - compressible.overRhoSimpleFoam.hotCylinder
 - compressible.rhoCentralDyMFoam.movingCone
 - compressible.rhoCentralFoam.forwardStep: activate purgeWrite=10
 - compressible.rhoCentralFoam.LadenburgJet60psi: rm redundant files: mapFieldsDict & sample
 - compressible.rhoCentralFoam.shockTube: rm redundant file: sample; command: cleanSample
 - compressible.rhoPimpleFoam.laminar.sineWaveDamping: rm redundant file: V; activate purgeWrite=10
 - compressible.rhoPimpleFoam.LES.pitzDaily: activate purgeWrite=10
 - compressible.rhoPimpleFoam.RAS.aerofoilNACA0012: activate purgeWrite=10
 - compressible.rhoPimpleFoam.RAS.angledDuct: add Allclean
 - compressible.rhoPimpleFoam.RAS.mixerVessel2D: add Allclean; rm makeMesh
 - compressible.rhoPimpleFoam.RAS.angledDuctLTS: add Allclean
 - compressible.rhoPimpleFoam.RAS.TJunctionAverage
 - compressible.rhoPorousSimpleFoam.angledDuct
 - compressible.rhoSimpleFoam.aerofoilNACA0012
 - compressible.rhoSimpleFoam.angledDuctExplicitFixedCoeff
 - compressible.rhoSimpleFoam.squareBend
 - compressible.rhoSimpleFoam.gasMixing.injectorPipe
 - compressible.sonicDyMFoam.movingCone: rm redundant file: cuttingPlane
 - compressible.sonicFoam.laminar.shockTube
 - compressible.sonicFoam.RAS.nacaAirfoil
 - compressible.sonicFoam.RAS.prism

  - refactors the corresponding tutorial by removing redundant files and items:
    compressible/rhoCentralFoam/biconic25-55Run35

- remove stray, unused file

- the vtkCellArray internal structure was still largely oriented on
  the VTK legacy format, but has now been revised.
  https://gitlab.kitware.com/vtk/vtk/merge_requests/5682

  The `VTK_CELL_ARRAY_V2` define from vtkCellArray.h indicates
  that the newer version is being used.

* In VTK-8.2.0 and older, sizes are interwoven (prefixed) in the
  connectivity.

  Connectivity: [n1, verts..., n2, verts... ]

  When using these in vtkUnstructuredGrid, also needed a secondary
  list of offsets for each of the starting locations.

* The update version now resembles a CompactListList. For example

  Connectivity: [verts..., verts... ]
  Offsets:      [0, n1, n1+n2, n1+n2+n3... ]

  The offsets are properly handled within vtkCellArray, and dropped as
  an additional input for vtkUnstructuredGrid.

- rationalized some layout and comments

ENH: stream adjustments

See merge request !332

- make stream constructors explicit

- remove "using std::ifstream", "using std::iofstream" statements
  for a cleaner namespace.

* copy/move assignments for ITstream

* IStringStream: default construct and construct from std::string
  instead of Foam::string

- reduce some overhead in masterOFstream

- simplify Pstream handling of string variants (#1525)

Submodule visualization

See merge request !331

- this submodule (https://develop.openfoam.com/modules/visualization)
  consolidates VTK-related visualization routines:

    * catalyst
    * paraview-plugins
    * runTimePostProcessing

  A benefit of this is make it easier to mix and match
  different combinations of VTK/ParaView versions and capabilities
  (Eg, MESA, MPI etc).

The catalyst submodule is now obsolete

SUBMODULE: added OpenQBMM submodule - see #1522

See merge request !330

Andrew Heather authored Jan 21, 2020 and Mark OLESEN committed Jan 23, 2020

OpenQBMM is a suite of solvers to simulate polydisperse multiphase flows using
Quadrature-Based Moment Methods (QBMM).  For more information, please see
https://www.openqbmm.org/

Main author: Alberto Passalacqua

- allows suppression when the banner is suppressed

For example,
  - ParaFoamReader     = (paraview >= 5.7)
  - libParaFoamReader  = (paraview < 5.7) and (OPENFOAM > 1912)
  - libPVFoamReader_SM = (OPENFOAM <= 1912)

- avoid stealing autoPtr in interpolationTable copy operations

- improve local memory requirements of readers

- make OpenFOAM table reader default constructible

- more code alignment between csvTableReader and Function1::CSV
  (fix #1498 for csvTableReader as well)

COMP: use generated methods in a few more places

- use os::write(token) for verbatim string to preserve its type

- consistent way of writing "patch" + Foam::name(id) etc.

- remove (unused) Istream constructors, prune some unused methods,
  rationalize write() vs writeDict().
  Deprecate inconsistent construction order.

- handle empty names for ".ftr" surface patches (for plain triSurface
  format) with double-quoted strings for more reliable streaming.
  Written on a single line.

  This is _backward_ compatible, but if users have been parsing these
  files manually, they will need to adjust their code.

Previously:
```
  (
  frt-fairing:001%1
  empty

  windshield:002%2
  empty
  ...
  )
```

Updated (with example handling of empty name):
```
  (
  frt-fairing:001%1 empty

  windshield:002%2 ""
  ...
  )
```

- was in surfMesh/triSurface/patches/
  now in OpenFOAM/meshes/Identifiers/surface/

This places the code closer to other identifier classes,
which aids in maintaining consistency

- make IOerror constructors explicit

ENH: shm: support for automatic faceZones

See merge request !327

ENH: regIOobject store() now also registers the object

See merge request !326

Mark OLESEN authored Jan 09, 2020 and Mattijs Janssens committed Jan 13, 2020

- previously the store() method just set the ownedByRegistry flag.
  Now ensure that it is indeed registered first.

- support register/store of tmp<> items.
  The tmp parameter is not cleared, but changed from PTR to CREF
  to allow further use.

  The implicit registration allows code simplification using the
  GeometricField::New factory method, for example.

  Old Code
  ========
      volScalarField* ptr = new volScalarField
      (
          IOobject
          (
              fieldName,
              mesh.time().timeName(),
              mesh,
              IOobject::NO_READ,
              IOobject::NO_WRITE,
              true  // Register
          ),
          mesh,
          dimless,
          zeroGradientFvPatchField<scalar>::typeName
      );
      ptr->store();

  New Code
  ========
      auto tptr = volScalarField::New
      (
          fieldName,
          mesh,
          dimless,
          zeroGradientFvPatchField<scalar>::typeName
      );
      regIOobject::store(tptr);

  or even
      regIOobject::store
      (
          volScalarField::New
          (
              fieldName,
              mesh,
              dimless,
              zeroGradientFvPatchField<scalar>::typeName
          )
      );