Development issueshttps://develop.openfoam.com/groups/Development/-/issues2022-03-04T17:49:31Zhttps://develop.openfoam.com/Development/openfoam/-/issues/2351FixedList/Pair writeEntry is not opposite of primitiveEntry reading2022-03-04T17:49:31ZMattijs Janssens4-Mattijs@users.noreply.develop.openfoam.comFixedList/Pair writeEntry is not opposite of primitiveEntry reading<!--
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### Summary
<!-- Summarize the bug encountered concisely -->
Write a Pair or FixedList to a binary stream using 'writeEntry' and the result cannot be read as a dictionary.
### Steps to reproduce
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Run attached test app (bit of hack) and it fails with some stream error on the worker processor. Run on e.g. cavity decomposed into two.
### Environment information
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- OpenFOAM version : v2112
### Possible fixes
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Have specialised writeEntry for FixedList which does not use the << operator (or the write routine) to maintain backwards compatibility but instead outputs 'like a List'.[Test-parallel-communicators.C](/uploads/af137f4bf2e969ad2355ae1f8f3ae353/Test-parallel-communicators.C)Mark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/2382fieldScaling : missing for sampling in ensight format2022-03-02T14:25:16ZPrashant SonakarfieldScaling : missing for sampling in ensight format### Functionality to add/problem to solve
With commit https://develop.openfoam.com/Development/openfoam/-/commit/f8ffee8135d242d352531cbb9dc6b80c5bf4e62a field scaling was extended, however it is still missing for ensight format.### Functionality to add/problem to solve
With commit https://develop.openfoam.com/Development/openfoam/-/commit/f8ffee8135d242d352531cbb9dc6b80c5bf4e62a field scaling was extended, however it is still missing for ensight format.Mark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/2376VTK export specifies binary format but writes ASCII files2022-03-01T21:36:07ZAaronVTK export specifies binary format but writes ASCII filesI noticed the vtk files written by openfoam are quite large - by reading and re-writing from paraview they can be made half the size.
It seems the default format:binary option mentioned in [functionObjects/utilities/vtkWrite.H](https://...I noticed the vtk files written by openfoam are quite large - by reading and re-writing from paraview they can be made half the size.
It seems the default format:binary option mentioned in [functionObjects/utilities/vtkWrite.H](https://develop.openfoam.com/Development/openfoam/blob/OpenFOAM-v2112/src/functionObjects/utilities/vtkWrite/vtkWrite.H) does not work - the resulting files are ASCII. Same for the [vtkSurfaceWriter.H](https://www.openfoam.com/documentation/guides/latest/api/vtkSurfaceWriter_8H_source.html)
This is easy to reproduce, just run the following on the motorbike tutorial.
`postProcess -funcs '(expCl_isoP expCl_wallVtp)'`
[expCl_isoP](/uploads/e2a2f3f81683436252fb53d23b90e0e0/expCl_isoP)
[expCl_wallVtp](/uploads/4b042f77d217611ffe846dc0bfe46adc/expCl_wallVtp)
It would be useful to have binary, compressed files as the files can get quite large for unsteady runs. Reporting as a bug since the source code and documentation suggest this capability is intended to be there already.Mark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/2280remove unused domainName and full hostName2022-02-28T13:26:41ZMark OLESENremove unused domainName and full hostName- neither are used
- probably don't work properly on windows
- POSIX version use deprecated gethostbyname()- neither are used
- probably don't work properly on windows
- POSIX version use deprecated gethostbyname()v2206Mark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/1623Add real density in turbulence models (for 2 phase flow simulations, such as ...2022-02-28T11:46:59ZGabriel Barajasbarajasg@unican.esAdd real density in turbulence models (for 2 phase flow simulations, such as fluid-structure interaction)It is a request that can be very useful when simulating fluid-structure interaction cases (two phase flow cases with an interface) for reducing the numerical damping.
I have realized that in turbulence models, density is defined as *geo...It is a request that can be very useful when simulating fluid-structure interaction cases (two phase flow cases with an interface) for reducing the numerical damping.
I have realized that in turbulence models, density is defined as *geometricOneField* (value of One all over the domain).
Just by changing to real density values (rhoFluid and rhoAir defined in *constant/transportProperties*), we can get more realistic values in the inteface water-air of the turbulent kinematic viscosity (as it can be seen in the picture).
![pic](/uploads/221e939f8e2c0d3f5cb517e58df4c085/pic.png)
I have added the subfix **IH** to all the new modification, so the *standard* and *new* turbulence models can coexist in the same libraries.
I enclose the codes ( **transportModels.tar.xz** and **TurbulenceModels.tar.xz**), the new solver (**interFoamIH.tar.xz**) and two tutorials:
* **waveExample_StokesI_Kepsilon.tar.xz**: waves (stokesI) in empty channel with standard turbulence model (kEpsilon).
* **waveExample_StokesI_KepsilonIH.tar.xz**: waves (stokesI) in empty channel with new turbulence models (called kEpsilonIH).
Please note that I have just updated the three most used turbulence models for fluid-structure interaction (kEpsilon, kOmega, kOmegaSST). It can be done for all the others too.
[interFoamIH.tar.xz](/uploads/d2e8104a9d09132e63cda38ae3815f04/interFoamIH.tar.xz)
[transportModels.tar.xz](/uploads/643299a779dffb9cf98ff470cc256336/transportModels.tar.xz)
[waveExample_StokesI_Kepsilon.tar.xz](/uploads/628207ad9bd7135d3f6017ac10a6f031/waveExample_StokesI_Kepsilon.tar.xz)
[TurbulenceModels.tar.xz](/uploads/c1c9eec00c515a4197a9cb3f8e090c08/TurbulenceModels.tar.xz)
[waveExample_StokesI_kEpsilonIH.tar.xz](/uploads/a236fe8cd44b1d50e278604db340e80b/waveExample_StokesI_kEpsilonIH.tar.xz)https://develop.openfoam.com/Development/openfoam/-/issues/1556issue with surfaceFieldValue in v19122022-02-28T09:38:35ZJozsef Nagyissue with surfaceFieldValue in v1912I noticed an issue with surfaceFieldValue combination with dynamicMotionSolverFvMesh in v1912. The function writes out the header for all time steps into the dat file.
I upload the case as a zip file. [case.zip](/uploads/41bf0f56d1470d7...I noticed an issue with surfaceFieldValue combination with dynamicMotionSolverFvMesh in v1912. The function writes out the header for all time steps into the dat file.
I upload the case as a zip file. [case.zip](/uploads/41bf0f56d1470d7e32d6695b6d80ef2a/case.zip)
If you run it in v1812 the dat file in postProcessing is fine. If you run it in v1912 it writes out the header in each time step, however if you change in dynamicMeshDict "dynamicMotionSolverFvMesh" to "staticFvMesh", the output is fine again.
Please consider, that the case is a constructed one for this problem, so it has no real physical meaning.https://develop.openfoam.com/Development/openfoam/-/issues/138writePrecision for sampled items2022-02-25T10:09:26ZMattijs Janssens4-Mattijs@users.noreply.develop.openfoam.comwritePrecision for sampled itemswritePrecision is definable for FOs but not
- surface writers (except for VTK; Ensight not possible)
- set writers
We could e.g. use IOstream::defaultPrecision which even without a runTime (e.g. surfaceConvert) still is set from etc/cont...writePrecision is definable for FOs but not
- surface writers (except for VTK; Ensight not possible)
- set writers
We could e.g. use IOstream::defaultPrecision which even without a runTime (e.g. surfaceConvert) still is set from etc/controlDict to 7.https://develop.openfoam.com/Development/openfoam/-/issues/2363AMIMethod not restartable2022-02-24T16:31:22ZMattijs Janssens4-Mattijs@users.noreply.develop.openfoam.comAMIMethod not restartable<!--
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### Summary
<!-- Summarize the bug encountered concisely -->
Various AMIMethods do not output their optional inputs.
### Steps to reproduce
<!-- How one can reproduce the issue - this is very important -->
E.g. create a blockMeshDict a cyclicAMI
AMIMethod nearestFaceAMI;
maxDistance2 1e-10; // optional max search distance (squared)
run blockMesh and look at the boundary file.
### Environment information
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- OpenFOAM version : v2112
@andyMattijs Janssens4-Mattijs@users.noreply.develop.openfoam.comMattijs Janssens4-Mattijs@users.noreply.develop.openfoam.comhttps://develop.openfoam.com/Development/openfoam/-/issues/2377BUG: timeActivatedFileUpdate check on non-master2022-02-24T16:31:22ZMark OLESENBUG: timeActivatedFileUpdate check on non-masterduring startup it checks the file existence on all processes, but the source is usually normally only present on the master.
In the best case, this faulty logic causes excessive filesystem queries. In the worst case, it will abort due to...during startup it checks the file existence on all processes, but the source is usually normally only present on the master.
In the best case, this faulty logic causes excessive filesystem queries. In the worst case, it will abort due to missing file on the non-master processes.
cross-ref: EP1839Mark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/2368masterUncollated with #include inside decomposeParDict hangs2022-02-24T16:31:22ZMattijs Janssens4-Mattijs@users.noreply.develop.openfoam.commasterUncollated with #include inside decomposeParDict hangs<!--
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### Summary
<!-- Summarize the bug encountered concisely -->
#include a file in the decomposeParDict. Now any parallel run will hang when run with -fileHandler masterUncollated.
See https://exchange.openfoam.com/node/1828
### Steps to reproduce
<!-- How one can reproduce the issue - this is very important -->
Any case. See above.
### What is the current *bug* behaviour?
<!-- What actually happens -->
Hangs. Stuck in some gatherList when parsing the dictionary (on the master).
### Environment information
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- OpenFOAM version : v2112
### Possible fixes
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decomposeParDict is special - it gets read during startup to read any roots and the number of processors. At this point the dictionary reading is not yet 'set up' so it should disable any parallel communication. The #include statement in the decomposeParDict triggers parallel communication.Mattijs Janssens4-Mattijs@users.noreply.develop.openfoam.comMattijs Janssens4-Mattijs@users.noreply.develop.openfoam.comhttps://develop.openfoam.com/Development/openfoam/-/issues/2290Native Windows binaries using MSYS22022-02-11T19:04:35ZFoadNative Windows binaries using MSYS2It appears as if the [natively](https://develop.openfoam.com/Development/openfoam/-/wikis/precompiled/windows#native-windows) compiled OpenFOAM package using MSYS2 and MinGW compilers/toolchain, requires [admin rights](https://www.cfd-on...It appears as if the [natively](https://develop.openfoam.com/Development/openfoam/-/wikis/precompiled/windows#native-windows) compiled OpenFOAM package using MSYS2 and MinGW compilers/toolchain, requires [admin rights](https://www.cfd-online.com/Forums/openfoam-installation/221673-question-opencfd-openfoam-v1906-dp-mingw-crosscompiled-windowsinstaller-exe.html#post751113). This is counterproductive as anyone having admin privileges would rather WSL immediately.
Trying to install the package on a Windows machine without the admin rights leads to the infamous
> path/to/folder/v2106/msys64/home/ofuser/OpenFOAM/OpenFOAM-v2106/platforms/win64MingwDPInt32Opt/bin/blockMesh.exe: error while loading shared libraries: libstdc++-6.dll: cannot open shared object file: No such file or directory
errors and others as I have explained [here](https://stackoverflow.com/q/70256103/4999991). MSYS2 folks tried helping me [here](https://discordapp.com/channels/792780131906617355/794889490941476915/918068453057921025) on their Discord server, to no avail. The MSYS2 now updates, but we are stuck at `msmpi` dependency. It would be great if you could
- provide a temporary workaround to solve the missing `libstdc++-6.dll` and `msmpi.dll`
- update/upgrade the underlying MSYS2 layer of the package
- provide some versions without MPI or use the MSYS2/MinGW native packages over externally installed ones.Pawan GhildiyalPawan Ghildiyalhttps://develop.openfoam.com/Development/openfoam/-/issues/2300odd behaviour with namedDictionary and/or SLList2022-02-11T19:03:34ZMark OLESENodd behaviour with namedDictionary and/or SLListStill under investigation - @Mattijs noticed that valgrind + topoSet was indicating some memory issues. v2012 is fine, v2106 and v2112 exhibit this problem. The main change between these versions is the handling of the topoSet entries. T...Still under investigation - @Mattijs noticed that valgrind + topoSet was indicating some memory issues. v2012 is fine, v2106 and v2112 exhibit this problem. The main change between these versions is the handling of the topoSet entries. There were previously a PtrList of entry, which meant that naming the action (looks like a dictionary) would not work - the reading would grab the entire content as a dictionary instead.
The problem seems to lie either with some assignment problems with namedDictionary itself, or slicing of the SLList types. Changing the List to an SLList in the topoSet application seems to indicate it might be the latter.
Testing on simpleFoam/pipeCyclic
Will investigate _after_ the v2112 release.v2206Mark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/2332reduce communication for globalIndex gather operations2022-02-11T19:03:12ZMark OLESENreduce communication for globalIndex gather operations- add in mpiGatherOp() to complement the gatherOp() static method
- populate globalIndex on master only: avoid gather/scatter list expense- add in mpiGatherOp() to complement the gatherOp() static method
- populate globalIndex on master only: avoid gather/scatter list expenseMark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/2349untriggered bug with vtk write uniform field in parallel2022-02-11T19:02:55ZMark OLESENuntriggered bug with vtk write uniform field in parallelThe VTK writers writeUniform method uses writeValueParallel (in parallel), which includes
a low-level MPI gather. However the wrapping routine contains an
additional safety check for is_contiguous which is not defined for
various `std::p...The VTK writers writeUniform method uses writeValueParallel (in parallel), which includes
a low-level MPI gather. However the wrapping routine contains an
additional safety check for is_contiguous which is not defined for
various `std::pair<..>` combinations.
Bug is not triggered with current code use, but should be eliminated.Mark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/2353ThirdParty documentation inconsistency2022-02-11T19:02:44ZDarrin StephensThirdParty documentation inconsistency
### Summary
The ThirdParty SOURCES.md says that the ADIOS2 version for OpenFOAM-v2112 is 2.7.1. However the version set in
etc/config.sh/adios2 and etc/config.csh/adios2 is still 2.6.0.
### Possible fixes
Update the etc/config.sh/adio...
### Summary
The ThirdParty SOURCES.md says that the ADIOS2 version for OpenFOAM-v2112 is 2.7.1. However the version set in
etc/config.sh/adios2 and etc/config.csh/adios2 is still 2.6.0.
### Possible fixes
Update the etc/config.sh/adios2 and etc/config.sh/adios2 files to use version 2.7.1.Mark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/2362writeDictionary function object with too many disk accesses2022-02-11T19:01:50ZMark OLESENwriteDictionary function object with too many disk accessesNoted in EP1794 when monitoring "controlDict"
Since the writeDictionary is attached to a regionFunctionObject, it will not see objects registered on time. For items that are not registered at all, it needs some improved logic.
@chiaraNoted in EP1794 when monitoring "controlDict"
Since the writeDictionary is attached to a regionFunctionObject, it will not see objects registered on time. For items that are not registered at all, it needs some improved logic.
@chiaraMark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/1558BUG: cyclicACMI & redistributePar Error2022-02-10T13:47:10ZJustin GraupmanBUG: cyclicACMI & redistributePar Error### Summary
Running redistributePar after decomposing a model with cyclicACMI patches will result in this error...
`[0] --> FOAM FATAL ERROR:
[0] Inconsistent ACMI patches ACMI2_couple and ACMI2_blockage. Patches should have identical...### Summary
Running redistributePar after decomposing a model with cyclicACMI patches will result in this error...
`[0] --> FOAM FATAL ERROR:
[0] Inconsistent ACMI patches ACMI2_couple and ACMI2_blockage. Patches should have identical topology
[0]
[0] From function virtual Foam::label Foam::cyclicACMIPolyPatch::nonOverlapPatchID() const
[0] in file AMIInterpolation/patches/cyclicACMI/cyclicACMIPolyPatch/cyclicACMIPolyPatch.C at line 538.
[0]
FOAM parallel run exiting`
### Steps to reproduce
Modify the Allrun-parallel file in the oscillatingInletACMI2D tutorial, add a **runParallel redistributePar** line after the decomposePar line. Optionally comment out the solver and reconstruct lines since they aren't needed to reproduce the error. Should look like this...
* runApplication decomposePar
* runParallel redistributePar
* #runParallel $(getApplication)
* #runApplication reconstructPar
Run the Allrun-parallel file, you'll find the error in log.redistributePar
### Example case
oscillatingInletACMI2D tutorial
### What is the current *bug* behaviour?
`[0] --> FOAM FATAL ERROR:
[0] Inconsistent ACMI patches ACMI2_couple and ACMI2_blockage. Patches should have identical topology
[0]
[0] From function virtual Foam::label Foam::cyclicACMIPolyPatch::nonOverlapPatchID() const
[0] in file AMIInterpolation/patches/cyclicACMI/cyclicACMIPolyPatch/cyclicACMIPolyPatch.C at line 538.
[0]
FOAM parallel run exiting`
### What is the expected *correct* behavior?
I expect it to redistribute the already decomposed mesh.
### Environment information
- OpenFOAM version : v1906
- Operating system : RHEL/Windows 10
- Hardware info : Intel
- Compiler : GCC/minGW
~bugMattijs Janssens4-Mattijs@users.noreply.develop.openfoam.comMattijs Janssens4-Mattijs@users.noreply.develop.openfoam.comhttps://develop.openfoam.com/Development/openfoam/-/issues/1827use default template parameter for Tuple22022-02-03T19:34:23ZMark OLESENuse default template parameter for Tuple2Could change declaration of Tuple2 to this:
```
template<class T1, class T2 = T1>
class Tuple2
{
...
}:
```
This would make it simpler, less verbose to use something like `Tuple2<label>` instead of `Tuple2<label, label>` for places whe...Could change declaration of Tuple2 to this:
```
template<class T1, class T2 = T1>
class Tuple2
{
...
}:
```
This would make it simpler, less verbose to use something like `Tuple2<label>` instead of `Tuple2<label, label>` for places where we would normally use `Pair<label>` but don't want the automatic binary output associated with Pair (inherited from FixedList).
Alternative? Derive Pair from Tuple2 ... not sure about that one.Mark OLESENMark OLESENhttps://develop.openfoam.com/Development/openfoam/-/issues/1481Website only consists of the letter x2022-01-31T23:18:06ZAdminWebsite only consists of the letter x[Here](https://www.openfoam.com/documentation/guides/latest/doc/openfoam-guide-mesh-motion.html) you link to [this](https://www.openfoam.com/documentation/guides/latest/doc/guide-mesh-motion-dynamicRefineFvMesh.html) and [this](https://w...[Here](https://www.openfoam.com/documentation/guides/latest/doc/openfoam-guide-mesh-motion.html) you link to [this](https://www.openfoam.com/documentation/guides/latest/doc/guide-mesh-motion-dynamicRefineFvMesh.html) and [this](https://www.openfoam.com/documentation/guides/latest/doc/guide-mesh-motion-dynamicMotionSolverFvMesh.html) website. Both of them are clearly unfinished: Quote from the site:
Properties
XXX
Usage
XXX
Details
XXX
Further information
Source code:
-XXX
\## Reattaching the author to the issue ticket: @volker-weissmann ##https://develop.openfoam.com/Development/openfoam/-/issues/2053Phase-constrained ScalarTransport only diffusive and not phase-constrained2022-01-31T15:19:13ZFranz DPhase-constrained ScalarTransport only diffusive and not phase-constrained<!--
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### Summary
Using the scalarTransport function object with interFoam results in the scalar being "stuck in the air" (i.e. leaving the phase and not propagating any further). Furthermore, there is no convective transport of the scalar.
The issue is described e.g. in this post as well: https://www.cfd-online.com/Forums/openfoam-solving/234344-interfoam-scalar-transport-single-phase.html#post798013
### Steps to reproduce
<!-- How one can reproduce the issue - this is very important -->
### Example case
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### What is the current *bug* behaviour?
Scalar which should be phase-constrained leaves the phase. No convective transport.
Setting the diffusion coefficient D=0 will result in the scalar not being transported at all.
### What is the expected *correct* behavior?
Convective + Diffusive transport of scalar, scalar should not leave the defined phase.
### Relevant logs and/or images
See this post:
https://www.cfd-online.com/Forums/openfoam-solving/234344-interfoam-scalar-transport-single-phase.html#post798013
### Environment information
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Operating system :
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- OpenFOAM version : v1912,v2006,v2012
- Operating system : Ubuntu
- Hardware info : various.
- Compiler : gcc
### Possible fixes
Maybe see https://www.cfd-online.com/Forums/openfoam-solving/234344-interfoam-scalar-transport-single-phase.html#post798013
And https://www.cfd-online.com/Forums/openfoam-solving/188437-foam-error-printstack-foam-ostream-interfoam-parallel-2.html#post797806
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