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catalyst
Commit 478eeaed authored by Mark Olesen's avatar Mark Olesen
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ENH: updated to use OpenFOAM vtk::vtuAdaptor structure

parent 566968ca
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Showing with 11 additions and 308 deletions
src/catalyst/CMakeLists-Project.txt
View file @ 478eeaed
......@@ -68,7 +68,6 @@ file(GLOB SOURCE_FILES
volMesh/catalystFvMesh.C
volMesh/foamVtkFvMeshAdaptor.C
volMesh/foamVtkFvMeshAdaptorGeom.C
volMesh/foamVtkFvMeshAdaptorGeomVtu.C
volMesh/foamVtkFvMeshAdaptorFields.C
)
......
src/catalyst/volMesh/foamVtkFvMeshAdaptor.H
View file @ 478eeaed
......@@ -58,14 +58,7 @@ SourceFiles
#include "PrimitivePatchInterpolation.H"
#include "volPointInterpolation.H"
#include "foamVtkTools.H"
#include "foamVtkMeshMaps.H"
#include <vtkSmartPointer.h>
#include <vtkPoints.h>
#include <vtkPolyData.h>
#include <vtkUnstructuredGrid.h>
#include <vtkMultiBlockDataSet.h>
#include "foamVtkVtuAdaptor.H"
// * * * * * * * * * * * * * Forward Declarations * * * * * * * * * * * * * //
......@@ -136,30 +129,8 @@ private:
//- Bookkeeping for vtkUnstructuredGrid
struct foamVtuData
:
public vtk::Caching<vtkUnstructuredGrid>,
public foamVtkMeshMaps
{
//- The vtk points for the mesh (and decomposition)
vtkSmartPointer<vtkPoints> points
(
const fvMesh& mesh
) const;
//- The vtk points for the mesh (and decomposition)
//- using the provided pointMap
vtkSmartPointer<vtkPoints> points
(
const fvMesh& mesh,
const labelUList& pointMap
) const;
//- Internal mesh as vtkUnstructuredGrid
vtkSmartPointer<vtkUnstructuredGrid> internal
(
const fvMesh& mesh,
const bool decompPoly
);
};
public vtk::vtuAdaptor
{};
// Private Data
......@@ -225,15 +196,6 @@ private:
//- Convert specified volume fields
void convertVolFields(const wordRes& selectFields);
//- Volume field
template<class Type>
vtkSmartPointer<vtkFloatArray> convertVolFieldToVTK
(
const GeometricField<Type, fvPatchField, volMesh>& fld,
const foamVtuData& vtuData
) const;
//- Volume field - all types
template<class Type>
void convertVolField
......
src/catalyst/volMesh/foamVtkFvMeshAdaptorFieldTemplates.C
View file @ 478eeaed
......@@ -216,30 +216,17 @@ void Foam::vtk::fvMeshAdaptor::convertVolFieldInternal
foamVtuData& vtuData = iter.object();
auto dataset = vtuData.dataset;
vtkSmartPointer<vtkFloatArray> cdata = convertVolFieldToVTK
dataset->GetCellData()->AddArray
(
fld,
vtuData
vtuData.convertField(fld)
);
dataset->GetCellData()->AddArray(cdata);
// double cbound[2];
// cdata->GetRange(cbound);
// Info<< "range cdata: " << cbound[0] << " - " << cbound[1] << nl;
if (ptfPtr.valid())
{
vtkSmartPointer<vtkFloatArray> pdata = convertPointField
dataset->GetPointData()->AddArray
(
ptfPtr(),
fld,
vtuData
convertPointField(ptfPtr(), fld, vtuData)
);
dataset->GetPointData()->AddArray(pdata);
// double bound[2];
// pdata->GetRange(bound);
// Info<< "range pdata: " << bound[0] << " - " << bound[1] << nl;
}
}
......@@ -331,49 +318,6 @@ vtkSmartPointer<vtkFloatArray> Foam::vtk::fvMeshAdaptor::convertPointField
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
//
// low-level conversions
//
template<class Type>
vtkSmartPointer<vtkFloatArray>
Foam::vtk::fvMeshAdaptor::convertVolFieldToVTK
(
const GeometricField<Type, fvPatchField, volMesh>& fld,
const foamVtuData& vtuData
) const
{
const int nComp(pTraits<Type>::nComponents);
const labelUList& cellMap = vtuData.cellMap();
auto data = vtkSmartPointer<vtkFloatArray>::New();
data->SetName(fld.name().c_str());
data->SetNumberOfComponents(nComp);
data->SetNumberOfTuples(cellMap.size());
DebugInfo
<< "convert volField: " << fld.name()
<< " size=" << cellMap.size()
<< " (" << fld.size() << " + "
<< (cellMap.size() - fld.size())
<< ") nComp=" << nComp << endl;
float scratch[pTraits<Type>::nComponents];
vtkIdType celli = 0;
for (const label meshCelli : cellMap)
{
vtk::Tools::foamToVtkTuple(scratch, fld[meshCelli]);
data->SetTuple(celli++, scratch);
}
return data;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#endif
// ************************************************************************* //
src/catalyst/volMesh/foamVtkFvMeshAdaptorGeom.C
View file @ 478eeaed
......@@ -27,10 +27,10 @@ License
#include "cellCellStencilObject.H"
// VTK includes
#include <vtkMultiBlockDataSet.h>
#include <vtkPolyData.h>
#include <vtkUnstructuredGrid.h>
#include <vtkSmartPointer.h>
#include "vtkMultiBlockDataSet.h"
#include "vtkPolyData.h"
#include "vtkUnstructuredGrid.h"
#include "vtkSmartPointer.h"
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
......
src/catalyst/volMesh/foamVtkFvMeshAdaptorGeomVtu.C deleted 100644 → 0
View file @ 566968ca
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright (C) 2016-2018 OpenCFD Ltd.
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM. If not, see <http://www.gnu.org/licenses/>.
\*---------------------------------------------------------------------------*/
#include "foamVtkFvMeshAdaptor.H"
// OpenFOAM includes
#include "fvMesh.H"
#include "foamVtkTools.H"
#include "foamVtuSizing.H"
// VTK includes
#include <vtkUnstructuredGrid.h>
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
vtkSmartPointer<vtkPoints>
Foam::vtk::fvMeshAdaptor::foamVtuData::points
(
const fvMesh& mesh
) const
{
// Convert OpenFOAM mesh vertices to VTK
auto vtkpoints = vtkSmartPointer<vtkPoints>::New();
// Normal points
const pointField& pts = mesh.points();
// Additional cell centres
const labelUList& addPoints = this->additionalIds();
vtkpoints->SetNumberOfPoints(pts.size() + addPoints.size());
// Normal points
vtkIdType pointId = 0;
for (const point& p : pts)
{
vtkpoints->SetPoint(pointId++, p.v_);
}
// Cell centres
for (const label meshCelli : addPoints)
{
vtkpoints->SetPoint(pointId++, mesh.cellCentres()[meshCelli].v_);
}
return vtkpoints;
}
vtkSmartPointer<vtkPoints>
Foam::vtk::fvMeshAdaptor::foamVtuData::points
(
const fvMesh& mesh,
const labelUList& pointMap
) const
{
// Convert OpenFOAM mesh vertices to VTK
auto vtkpoints = vtkSmartPointer<vtkPoints>::New();
// Normal points
const pointField& pts = mesh.points();
// Additional cell centres
const labelUList& addPoints = this->additionalIds();
vtkpoints->SetNumberOfPoints(pointMap.size() + addPoints.size());
// Normal points
vtkIdType pointId = 0;
for (const label meshPointi : pointMap)
{
vtkpoints->SetPoint(pointId++, pts[meshPointi].v_);
}
// Cell centres
for (const label meshCelli : addPoints)
{
vtkpoints->SetPoint(pointId++, mesh.cellCentres()[meshCelli].v_);
}
return vtkpoints;
}
vtkSmartPointer<vtkUnstructuredGrid>
Foam::vtk::fvMeshAdaptor::foamVtuData::internal
(
const fvMesh& mesh,
const bool decompPoly
)
{
vtk::vtuSizing sizing(mesh, decompPoly);
auto cellTypes = vtkSmartPointer<vtkUnsignedCharArray>::New();
auto cells = vtkSmartPointer<vtkCellArray>::New();
auto faces = vtkSmartPointer<vtkIdTypeArray>::New();
auto cellLocations = vtkSmartPointer<vtkIdTypeArray>::New();
auto faceLocations = vtkSmartPointer<vtkIdTypeArray>::New();
UList<uint8_t> cellTypesUL =
vtk::Tools::asUList(cellTypes, sizing.nFieldCells());
UList<vtkIdType> cellsUL =
vtk::Tools::asUList
(
cells,
sizing.nFieldCells(),
sizing.sizeInternal(vtk::vtuSizing::slotType::CELLS)
);
UList<vtkIdType> cellLocationsUL =
vtk::Tools::asUList
(
cellLocations,
sizing.sizeInternal(vtk::vtuSizing::slotType::CELLS_OFFSETS)
);
UList<vtkIdType> facesUL =
vtk::Tools::asUList
(
faces,
sizing.sizeInternal(vtk::vtuSizing::slotType::FACES)
);
UList<vtkIdType> faceLocationsUL =
vtk::Tools::asUList
(
faceLocations,
sizing.sizeInternal(vtk::vtuSizing::slotType::FACES_OFFSETS)
);
sizing.populateInternal
(
mesh,
cellTypesUL,
cellsUL,
cellLocationsUL,
facesUL,
faceLocationsUL,
static_cast<foamVtkMeshMaps&>(*this)
);
auto vtkmesh = vtkSmartPointer<vtkUnstructuredGrid>::New();
// Convert OpenFOAM mesh vertices to VTK
// - can only do this *after* populating the decompInfo with cell-ids
// for any additional points (ie, mesh cell-centres)
vtkmesh->SetPoints(this->points(mesh));
if (facesUL.size())
{
vtkmesh->SetCells
(
cellTypes,
cellLocations,
cells,
faceLocations,
faces
);
}
else
{
vtkmesh->SetCells
(
cellTypes,
cellLocations,
cells,
nullptr,
nullptr
);
}
return vtkmesh;
}
// ************************************************************************* //
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