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    /*---------------------------------------------------------------------------*\
      =========                 |
      \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
       \\    /   O peration     |
        \\  /    A nd           | Copyright (C) 2005-2007 Franjo Juretic
         \\/     M anipulation  |
    -------------------------------------------------------------------------------
    License
        This file is part of OpenFOAM.
    
        OpenFOAM is free software; you can redistribute it and/or modify it
        under the terms of the GNU General Public License as published by the
        Free Software Foundation; either version 2 of the License, or (at your
        option) any later version.
    
        OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
        ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
        FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
        for more details.
    
        You should have received a copy of the GNU General Public License
        along with OpenFOAM; if not, write to the Free Software Foundation,
        Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
    
    Description
    
    \*---------------------------------------------------------------------------*/
    
    #include "cartesianMeshGenerator.H"
    #include "triSurf.H"
    #include "demandDrivenData.H"
    #include "objectRegistry.H"
    #include "Time.H"
    #include "meshOctreeCreator.H"
    #include "cartesianMeshExtractor.H"
    #include "meshSurfaceEngine.H"
    #include "meshSurfaceMapper.H"
    #include "meshSurfaceEdgeExtractorNonTopo.H"
    #include "surfaceMorpherCells.H"
    #include "meshOptimizer.H"
    #include "meshSurfaceOptimizer.H"
    #include "topologicalCleaner.H"
    #include "boundaryLayers.H"
    #include "renameBoundaryPatches.H"
    #include "checkMeshDict.H"
    #include "checkCellConnectionsOverFaces.H"
    #include "checkIrregularSurfaceConnections.H"
    #include "checkNonMappableCellConnections.H"
    #include "checkBoundaryFacesSharingTwoEdges.H"
    
    //#define DEBUG
    //#define DEBUGfpma
    
    # ifdef DEBUG
    #include "writeMeshEnsight.H"
    #include "writeMeshFPMA.H"
    # endif
    
    // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
    
    namespace Foam
    {
    
    // * * * * * * * * * * * * Private member functions  * * * * * * * * * * * * //
        
    void cartesianMeshGenerator::createCartesianMesh()
    {
    	//- create polyMesh from octree boxes
    	cartesianMeshExtractor cme(*octreePtr_, meshDict_, mesh_);
    	
        if( meshDict_.found("decomposePolyhedraIntoTetsAndPyrs") )
        {
            if( readBool(meshDict_.lookup("decomposePolyhedraIntoTetsAndPyrs")) )
                cme.decomposeSplitHexes();
        }
        
    	cme.createMesh();
    	
    	# ifdef DEBUG
    	mesh_.write();
    	# ifdef DEBUGfpma
    	writeMeshFPMA(mesh_, "cartesianMesh");
    	# else
    	writeMeshEnsight(mesh_, "cartesianMesh");
    	# endif
    	//::exit(EXIT_FAILURE);
    	# endif
    }
    	
    void cartesianMeshGenerator::surfacePreparation()
    {
    	//- removes unnecessary cells and morph the boundary
        //- such that there is only one boundary face per cell
    	//- It also checks topology of cells after morphing is performed
    /*	do
    	{
    		surfaceMorpherCells* cmPtr = new surfaceMorpherCells(mesh_);
    		cmPtr->morphMesh();
    		deleteDemandDrivenData(cmPtr);
    	} while( topologicalCleaner(mesh_).cleanTopology() );
        */
        
        bool changed;
        do
        {
            changed = false;
    
            checkIrregularSurfaceConnections checkConnections(mesh_);
            if( checkConnections.checkAndFixIrregularConnections() )
                changed = true;
            
            if( checkNonMappableCellConnections(mesh_).removeCells() )
                changed = true;
            
            if( checkCellConnectionsOverFaces(mesh_).checkCellGroups() )
                changed = true;
    	} while( changed );
        
        checkBoundaryFacesSharingTwoEdges(mesh_).improveTopology();
        
    	# ifdef DEBUG
    	mesh_.write();
    	# ifdef DEBUGfpma
    	writeMeshFPMA(mesh_, "afterTopoCleaning");
    	# else
    	writeMeshEnsight(mesh_, "afterTopoCleaning");
    	# endif
    	//::exit(EXIT_FAILURE);
    	# endif
    }
    		
    void cartesianMeshGenerator::mapMeshToSurface()
    {
    	//- calculate mesh surface
        meshSurfaceEngine* msePtr = new meshSurfaceEngine(mesh_);
        
        //- pre-map mesh surface
        meshSurfaceMapper mapper(*msePtr, *octreePtr_);
        mapper.preMapVertices();
        
        # ifdef DEBUG
    	# ifdef DEBUGfpma
        writeMeshFPMA(mesh_, "preMappedMesh");
        # else
    	writeMeshEnsight(mesh_, "preMappedMesh");
    	# endif
    	mesh_.write();
    	//::exit(EXIT_FAILURE);
    	# endif
        
    	//- map mesh surface on the geometry surface	
    	mapper.mapVerticesOntoSurface();
        
    	# ifdef DEBUG
    	# ifdef DEBUGfpma
    	writeMeshFPMA(mesh_, "afterMapping");
    	# else
    	writeMeshEnsight(mesh_, "afterMapping");
    	# endif
    	mesh_.write();
    	//::exit(EXIT_FAILURE);
    	# endif
    	
    	//- untangle surface faces
    	meshSurfaceOptimizer(*msePtr, *octreePtr_).preOptimizeSurface();
    	
    	# ifdef DEBUG
    	# ifdef DEBUGfpma
    	writeMeshFPMA(mesh_, "afterSurfaceSmoothing");
    	# else
    	writeMeshEnsight(mesh_, "afterSurfaceSmoothing");
    	# endif
    	mesh_.write();
    	//::exit(EXIT_FAILURE);
    	# endif
        
        deleteDemandDrivenData(msePtr);
    }
    
    void cartesianMeshGenerator::mapEdgesAndCorners()
    {
    	meshSurfaceEdgeExtractorNonTopo(mesh_, *octreePtr_);
        
    	# ifdef DEBUG
    	mesh_.write();
    	//meshOptimizer(*octreePtr_, mesh_).preOptimize();
    	# ifdef DEBUGfpma
    	writeMeshFPMA(mesh_, "withEdges");
    	# else
    	writeMeshEnsight(mesh_, "withEdges");
    	#endif
    	//::exit(EXIT_FAILURE);
    	# endif
    }
    
    void cartesianMeshGenerator::optimiseMeshSurface()
    {
    	meshSurfaceEngine mse(mesh_);
    	meshSurfaceOptimizer(mse, *octreePtr_).optimizeSurface();
    	
    	# ifdef DEBUG
    	mesh_.write();
    	# ifdef DEBUGfpma
    	writeMeshFPMA(mesh_, "optSurfaceWithEdges");
    	# else
    	writeMeshEnsight(mesh_, "optSurfaceWithEdges");
    	#endif
    	//::exit(EXIT_FAILURE);
    	# endif
    }
    		
    void cartesianMeshGenerator::generateBoudaryLayers()
    {
    	boundaryLayers bl(mesh_);
        
        if( meshDict_.found("boundaryLayers") )
        {
            wordList createLayers(meshDict_.lookup("boundaryLayers"));
            
            forAll(createLayers, patchI)
                bl.addLayerForPatch(createLayers[patchI]);
        }
        else
        {
            //bl.createOTopologyLayers();
            bl.addLayerForAllPatches();
    	}
        
    	# ifdef DEBUG
        # ifdef DEBUGfpma
        writeMeshFPMA(mesh_, "meshWithBndLayer");
        # else 
    	writeMeshEnsight(mesh_, "meshWithBndLayer");
        # endif
    	mesh_.write();
    	//::exit(EXIT_FAILURE);
    	# endif
    }
    		
    void cartesianMeshGenerator::optimiseFinalMesh()
    {
    	//- final optimisation
    	meshOptimizer optimizer(mesh_);
        
        optimizer.optimizeSurface(*octreePtr_);
        
        deleteDemandDrivenData(octreePtr_);
        
        optimizer.optimizeMeshFV();
    	
    	# ifdef DEBUG
    	# ifdef DEBUGfpma
    	writeMeshFPMA(mesh_,"optimisedMesh");
    	# else
    	writeMeshEnsight(mesh_, "optimisedMesh");
    	#endif
    	# endif
    }
    
    void cartesianMeshGenerator::replaceBoundaries()
    {
        renameBoundaryPatches rbp(mesh_, meshDict_);
        
        # ifdef DEBUG
    	# ifdef DEBUGfpma
    	writeMeshFPMA(mesh_,"renamedPatchesMesh");
    	# else
    	writeMeshEnsight(mesh_, "renamedPatchesMesh");
    	#endif
    	# endif
    }
    
    void cartesianMeshGenerator::renumberMesh()
    {
    	polyMeshGenModifier(mesh_).renumberMesh();
    	
    	# ifdef DEBUG
    	# ifdef DEBUGfpma
    	writeMeshFPMA(mesh_,"renumberedMesh");
    	# else
    	writeMeshEnsight(mesh_, "renumberedMesh");
    	#endif
    	# endif
    }
    	
    void cartesianMeshGenerator::generateMesh()
    {
    	createCartesianMesh();
    	
    	surfacePreparation();
    	
    	mapMeshToSurface();
    	
    	mapEdgesAndCorners();
    	
    	optimiseMeshSurface();
    
    	generateBoudaryLayers();
    	
    	optimiseFinalMesh();
    	
    	renumberMesh();
        
        replaceBoundaries();
    }
    
    // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
    
    // Construct from objectRegistry
    cartesianMeshGenerator::cartesianMeshGenerator(const Time& time)
    :
        db_(time),
        surfacePtr_(NULL),
        meshDict_
        (
            IOobject
            (
                "meshDict",
                db_.system(),
                db_,
                IOobject::MUST_READ,
                IOobject::NO_WRITE
            )
        ),
        octreePtr_(NULL),
    	mesh_(time)
    {
        if( true )
        {
            checkMeshDict cmd(meshDict_);
        }
        
        fileName surfaceFile = meshDict_.lookup("surfaceFile");
        if( Pstream::parRun() )
    		surfaceFile = ".."/surfaceFile;
    
        surfacePtr_ = new triSurf(db_.path()/surfaceFile);
    	
    	if( meshDict_.found("subsetFileName") )
    	{
    		fileName subsetFileName = meshDict_.lookup("subsetFileName");
            if( Pstream::parRun() )
    			subsetFileName = ".."/subsetFileName;
    		surfacePtr_->readFaceSubsets(db_.path()/subsetFileName);
    	}
    
        octreePtr_ = new meshOctree(*surfacePtr_);
    	
    	meshOctreeCreator(*octreePtr_, meshDict_).createOctreeBoxes();
    
        generateMesh();
    }
    
    /*
    cartesianMeshGenerator::cartesianMeshGenerator
    (
        const objectRegistry& time,
        const volScalarField& localCellSize
    )
    :
        db_(time),
        surfacePtr_(NULL),
        meshDict_
        (
            IOobject
            (
                "meshDict",
                db_.time().constant(),
                db_,
                IOobject::MUST_READ,
                IOobject::NO_WRITE
            )
        ),
        octreePtr_(NULL),
    	mesh_(time)
    {
        fileName surfaceFile = meshDict_.lookup("surfaceFile");
    
        surfacePtr_ = new triSurface(db_.path()/surfaceFile);
    
        octreePtr_ = new meshOctree(*surfacePtr_);
    
        generateMesh();
    }
    */
    
    // * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
    
    cartesianMeshGenerator::~cartesianMeshGenerator()
    {
        deleteDemandDrivenData(surfacePtr_);
        deleteDemandDrivenData(octreePtr_);
    }
    
    // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
    
    void cartesianMeshGenerator::writeMesh() const
    {	
    	mesh_.write();
    }
    
    // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
    
    } // End namespace Foam
    
    // ************************************************************************* //