Resolves bug-report http://bugs.openfoam.org/view.php?id=2239

Renamed the original 'laminar' model to 'Stokes' to indicate it is a
linear stress model supporting both Newtonian and non-Newtonian
viscosity.

This general framework will support linear, non-linear, visco-elastic
etc. laminar transport models.

For backward compatibility the 'Stokes' laminar stress model can be
selected either the original 'laminar' 'simulationType'
specification in turbulenceProperties:

    simulationType laminar;

or using the new more general 'laminarModel' specification:

    simulationType laminar;

    laminar
    {
        laminarModel        Stokes;
    }

which allows other laminar stress models to be selected.

solvers: Moved createRDeltaT.H into createFields.H so that it is available with the -postProcess option

Required to support LTS with the -postProcess option with sub-models dependent on ddt
terms during construction, in particular reactingTwoPhaseEulerFoam.

Patch proveded by Alexey Matveichev
Resolves bug-report http://bugs.openfoam.org/view.php?id=2229

Resolves bug-report http://bugs.openfoam.org/bug_change_status_page.php

Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2233

  - There will be triangles rendered inside the mesh (when
    surface-rendering), because one of the cell's triangles is defined
    as a quadrangle in VTK_WEDGE.

  - Therefore, this VTK_WEDGE representation is only used when
    decomposing the mesh, otherwise the correct representation is done
    by VTK_POLYHEDRON.

  - Furthermore, using VTK_PYRAMID gave worse result, because it renders
    2 triangles inside the mesh for the collapsed quadrangle, likely due
    to mismatch with the adjacent cell's face.

  - Using VTK_HEXAHEDRON was not tested in this iteration, given that it
    should give even worse results, when compared to using VTK_PYRAMID.

Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2099

Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2213

Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2192

SLList: now a C++11 template alias rather than a wrapper-class.

Resolves bug-report http://bugs.openfoam.org/view.php?id=2186

Resolves bug-report http://bugs.openfoam.org/view.php?id=2181

Now the functionality to write single graph files or log files (vs time)
may be used in the creation of any form of functionObject, not just
those relating to a mesh region.

e.g.
    HashTable<label, string> table1
    {
        {"kjhk", 10},
        {"kjhk2", 12}
    };

    HashTable<label, label, Hash<label>> table2
    {
        {3, 10},
        {5, 12},
        {7, 16}
    };

Requires gcc version 4.7 or higher

FixedList: Add constructors from iterators and C++11 initializer_list using C++11 constructor delegation

Test-List: Add demonstration of C++11 initializer list in conjunction with uniform initialization of vector

     List<vector> list5
     {
         {5, 3, 1},
         {10, 2, 2},
         {8, 1, 0}
     };

Until C++ supports 'concepts' the only way to support construction from
two iterators is to provide a constructor of the form:

        template<class InputIterator>
        List(InputIterator first, InputIterator last);

which for some types conflicts with

        //- Construct with given size and value for all elements
        List(const label, const T&);

e.g. to construct a list of 5 scalars initialized to 0:

    List<scalar> sl(5, 0);

causes a conflict because the initialization type is 'int' rather than
'scalar'.  This conflict may be resolved by specifying the type of the
initialization value:

    List<scalar> sl(5, scalar(0));

The new initializer list contructor provides a convenient and efficient alternative
to using 'IStringStream' to provide an initial list of values:

    List<vector> list4(IStringStream("((0 1 2) (3 4 5) (6 7 8))")());

or

    List<vector> list4
    {
        vector(0, 1, 2),
        vector(3, 4, 5),
        vector(6, 7, 8)
    };

Thanks to Bruno Santos for providing the script to check the files
Resolves bug-report http://bugs.openfoam.org/view.php?id=2169

TurbulenceModels: Reorganized support macros to simplify the creation of additional turbulence model libraries

  - the checking for point-connected multiple-regions now also writes the
    conflicting points to a pointSet
  - with the -writeSets option it now also reconstructs & writes pointSets

  - the checking for point-connected multiple-regions now also writes the
    conflicting points to a pointSet
  - with the -writeSets option it now also reconstructs & writes pointSets

Resolves bug-report http://bugs.openfoam.org/view.php?id=2156

Resolves bug-report http://bugs.openfoam.org/view.php?id=2156

Resolves bug-report http://bugs.openfoam.org/view.php?id=2148

Provides efficient integration of complex laminar reaction chemistry,
combining the advantages of automatic dynamic specie and reaction
reduction with ISAT (in situ adaptive tabulation).  The advantages grow
as the complexity of the chemistry increases.

References:
    Contino, F., Jeanmart, H., Lucchini, T., & D’Errico, G. (2011).
    Coupling of in situ adaptive tabulation and dynamic adaptive chemistry:
    An effective method for solving combustion in engine simulations.
    Proceedings of the Combustion Institute, 33(2), 3057-3064.

    Contino, F., Lucchini, T., D'Errico, G., Duynslaegher, C.,
    Dias, V., & Jeanmart, H. (2012).
    Simulations of advanced combustion modes using detailed chemistry
    combined with tabulation and mechanism reduction techniques.
    SAE International Journal of Engines,
    5(2012-01-0145), 185-196.

    Contino, F., Foucher, F., Dagaut, P., Lucchini, T., D’Errico, G., &
    Mounaïm-Rousselle, C. (2013).
    Experimental and numerical analysis of nitric oxide effect on the
    ignition of iso-octane in a single cylinder HCCI engine.
    Combustion and Flame, 160(8), 1476-1483.

    Contino, F., Masurier, J. B., Foucher, F., Lucchini, T., D’Errico, G., &
    Dagaut, P. (2014).
    CFD simulations using the TDAC method to model iso-octane combustion
    for a large range of ozone seeding and temperature conditions
    in a single cylinder HCCI engine.
    Fuel, 137, 179-184.

Two tutorial cases are currently provided:
    + tutorials/combustion/chemFoam/ic8h18_TDAC
    + tutorials/combustion/reactingFoam/laminar/counterFlowFlame2D_GRI_TDAC

the first of which clearly demonstrates the advantage of dynamic
adaptive chemistry providing ~10x speedup,

the second demonstrates ISAT on the modest complex GRI mechanisms for
methane combustion, providing a speedup of ~4x.

More tutorials demonstrating TDAC on more complex mechanisms and cases
will be provided soon in addition to documentation for the operation and
settings of TDAC.  Also further updates to the TDAC code to improve
consistency and integration with the rest of OpenFOAM and further
optimize operation can be expected.

Original code providing all algorithms for chemistry reduction and
tabulation contributed by Francesco Contino, Tommaso Lucchini, Gianluca
D’Errico, Hervé Jeanmart, Nicolas Bourgeois and Stéphane Backaert.

Implementation updated, optimized and integrated into OpenFOAM-dev by
Henry G. Weller, CFD Direct Ltd with the help of Francesco Contino.

Based on a patch contributed by Francesco Contino, Tommaso Lucchini,
Gianluca D’Errico, Hervé Jeanmart, Nicolas Bourgeois and Stéphane
Backaert.

Resolves bug-report http://bugs.openfoam.org/view.php?id=2140

for consistency with HeatAndMassTransferPhaseSystem.C
Resolves bug-report http://bugs.openfoam.org/view.php?id=2141