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Commit 1ed1f647 authored by Mark OLESEN's avatar Mark OLESEN
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CONFIG: update versions 

|       v2312       |       v2406       |   comment     |
|-------------------|-------------------|---------------|
| ADIOS2-2.9.2      | ADIOS2-2.10.1     | updates       |
| ParaView-v5.11.2  | ParaView-v5.12.1  | updates       |
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BUILD.md
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......@@ -419,6 +419,7 @@ you may have additional hurdles to using the newest versions of clang.
| [boost][page boost] | [download][link boost]
| [CGAL][page CGAL] | [download][link CGAL]
| [FFTW][page FFTW] | [download][link FFTW]
| [HDF5][page HDF5] | [download][link HDF5]
| [PETSC][page PETSC] | [download][link PETSC]
| [HYPRE][page HYPRE] | [repo][repo HYPRE] or [download][link HYPRE]
| [ADF/CGNS][page CGNS], ccm | [link ccmio][link ccmio]
......@@ -526,7 +527,11 @@ easier to use `grep` and find the relevant pages and links.
<!-- parallel -->
[page adios]: https://csmd.ornl.gov/software/adios2
[repo adios]: https://github.com/ornladios/ADIOS2
[link adios]: https://github.com/ornladios/ADIOS2/archive/v2.8.3.tar.gz
[link adios]: https://github.com/ornladios/ADIOS2/archive/v2.10.1.tar.gz
[page hdf5]: https://www.hdfgroup.org
[repo hdf5]: https://github.com/HDFGroup/hdf5
[link hdf5]: https://github.com/HDFGroup/hdf5/archive/refs/tags/hdf5_1.14.4.3.tar.gz
[page zfp]: http://computation.llnl.gov/projects/floating-point-compression/zfp-versions
......@@ -555,7 +560,7 @@ easier to use `grep` and find the relevant pages and links.
[link mpich]: http://www.mpich.org/static/downloads/3.4.2/mpich-3.4.2.tar.gz
[page mvpapich]: http://mvapich.cse.ohio-state.edu/
[link mvpapich]: http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-2.3.6.tar.gz
[link mvpapich]: https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-2.3.7-1.tar.gz
<!-- general -->
[page cmake]: http://www.cmake.org/
......@@ -570,12 +575,12 @@ easier to use `grep` and find the relevant pages and links.
[page FFTW]: http://www.fftw.org/
[link FFTW]: http://www.fftw.org/fftw-3.3.10.tar.gz
[page petsc]: https://www.mcs.anl.gov/petsc/
[link petsc]: https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.19.2.tar.gz
[page petsc]: https://petsc.org/
[link petsc]: https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-lite-3.21.2.tar.gz
[page hypre]: https://computing.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods/
[repo hypre]: https://github.com/hypre-space/hypre/
[link hypre]: https://github.com/hypre-space/hypre/archive/v2.28.0.tar.gz
[link hypre]: https://github.com/hypre-space/hypre/archive/v2.31.0.tar.gz
[page cgns]: http://cgns.github.io/
[link ccmio]: http://portal.nersc.gov/project/visit/third_party/libccmio-2.6.1.tar.gz (check usage conditions)
......@@ -590,8 +595,8 @@ easier to use `grep` and find the relevant pages and links.
<!-- profilint -->
[link extrae]: https://github.com/bsc-performance-tools/extrae/archive/refs/tags/4.0.6.tar.gz
[link libunwind]: https://github.com/libunwind/libunwind/releases/download/v1.7.2/libunwind-1.7.2.tar.gz
[link extrae]: https://github.com/bsc-performance-tools/extrae/archive/refs/tags/4.1.7.tar.gz
[link libunwind]: https://github.com/libunwind/libunwind/releases/download/v1.8.1/libunwind-1.8.1.tar.gz
[link papi]: http://icl.utk.edu/projects/papi/downloads/papi-7.0.1.tar.gz
<!-- Visualization -->
......@@ -603,8 +608,9 @@ easier to use `grep` and find the relevant pages and links.
[link ParaView58]: http://www.paraview.org/files/v5.8/ParaView-v5.8.1.tar.xz
[link ParaView59]: http://www.paraview.org/files/v5.9/ParaView-v5.9.1.tar.xz
[link ParaView510]: http://www.paraview.org/files/v5.10/ParaView-v5.10.1.tar.xz
[link ParaView511]: http://www.paraview.org/files/v5.11/ParaView-v5.11.1.tar.xz
[link ParaView]: http://www.paraview.org/files/v5.11/ParaView-v5.11.2.tar.xz
[link ParaView511]: http://www.paraview.org/files/v5.11/ParaView-v5.11.2.tar.xz
[link ParaView512]: http://www.paraview.org/files/v5.12/ParaView-v5.12.1.tar.xz
[link ParaView]: http://www.paraview.org/files/v5.12/ParaView-v5.12.1.tar.xz
[page mesa]: http://mesa3d.org/
[link mesa]: ftp://ftp.freedesktop.org/pub/mesa/mesa-17.1.1.tar.xz
......@@ -618,4 +624,4 @@ easier to use `grep` and find the relevant pages and links.
---
Copyright 2016-2023 OpenCFD Ltd
Copyright 2016-2024 OpenCFD Ltd
SOURCES.md
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Third-party software (shipped) versions according to OpenFOAM version
# OpenFOAM-2406
- ADIOS2-2.10.1 *update*
- CGAL-4.14.3
- ParaView-v5.12.1 *update*
- boost_1_74_0
- fftw-3.3.10
- openmpi-4.1.2
- scotch_6.1.0
- kahip-3.15
# OpenFOAM-2312
- ADIOS2-2.9.2 *update*
......
makeHDF5 0 → 100755
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#!/bin/sh
#------------------------------------------------------------------------------
# \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
# \\ / O peration |
# \\ / A nd | www.openfoam.com
# \\/ M anipulation |
#------------------------------------------------------------------------------
# Copyright (C) 2024 OpenCFD Ltd.
#------------------------------------------------------------------------------
# License
# This file is part of OpenFOAM, distributed under GPL-3.0-or-later.
#
# Script
# makeHDF5
#
# Description
# Build script for HDF5
#
# ----------------------------------------------
# NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
#------------------------------------------------------------------------------
# Dynamic library ending (default is .so)
[ "$(uname -s)" = Darwin ] && EXT_SO=.dylib || EXT_SO=.so
# Short-circuit test for an installation
if [ "$1" = "-test" ]
then
[ "$#" -eq 2 ] || { echo "${0##*/} -test : needs 1 argument"; exit 1; }
dir="${2%/}" # <- *_ARCH_PATH
[ -d "$dir/include" ] || exit 2
package="hdf5"
libName="hdf5"
for lib in \
"$dir/lib/$libName$EXT_SO" \
"$dir/lib$WM_COMPILER_LIB_ARCH/$libName$EXT_SO" \
;
do
if [ -r "$lib" ]
then
echo " $package include: $dir/include"
echo " $package library: ${lib%/*}"
exit 0
fi
done
exit 2
fi
#------------------------------------------------------------------------------
if : # Run from third-party directory
then
cd "${0%/*}" || exit
wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
echo "Error (${0##*/}) : not located in \$WM_THIRD_PARTY_DIR"
echo " Check your OpenFOAM environment and installation"
exit 1
}
fi
. "${WM_THIRD_PARTY_DIR:?}"/etc/tools/ThirdPartyFunctions
. "${WM_THIRD_PARTY_DIR:?}"/etc/tools/CMakeFunctions
#------------------------------------------------------------------------------
# Obtain version from OpenFOAM etc/config.sh file:
_foamConfig hdf5
PACKAGE="${hdf5_version:-none}"
# Hint for cmake findMPI
if [ -d "$MPI_ARCH_PATH" ]
then
export MPI_HOME="$MPI_ARCH_PATH"
fi
#------------------------------------------------------------------------------
printVersions() { listPackageVersions hdf5; exit 0; }
printHelp() {
cat<<USAGE
Usage: ${0##*/} [OPTION] [HDF5-VERSION]
options:
-force Force compilation, even if include/library already exists
-gcc Force use of gcc/g++
-cmake PATH With cmake from the given path
-mpi-home PATH With hint for MPI_HOME
-DNAME=VALUE add cmake variable
-list List available unpacked source versions
-help Display usage help
* Build HDF5
${PACKAGE:-[unspecified]}
USAGE
showDownloadHint hdf5
exit 0 # Clean exit
}
#------------------------------------------------------------------------------
exportCompiler minimal # Minimal compiler info for CMake/configure
unset optForce
# Parse options
while [ "$#" -gt 0 ]
do
case "$1" in
'') ;; # Ignore empty
-h | -help*) printHelp;;
-list) printVersions;;
-gcc) useGcc ;;
-force) optForce=true ;;
-cmake)
[ "$#" -ge 2 ] || die "'$1' option requires an argument"
CMAKE_PATH="${2%%/}"
shift
;;
-mpi-home) # mpi with hint
[ "$#" -ge 2 ] || die "'$1' option requires an argument"
export MPI_HOME="${2%%/}"
case "${MPI_HOME:-none}" in (false|none) unset MPI_HOME;; esac
shift
;;
hdf/* | hdf5/* | sources/hdf* | \
hdf5[-_][0-9]* | hdf5-git* )
PACKAGE="${1%%/}"
;;
-D[A-Z]*=* | [A-Z]*=*) # cmake variables
addCMakeVariable "$1"
;;
*)
die "unknown option/argument: '$1'"
;;
esac
shift
done
if [ -z "$PACKAGE" ]
then
die "The HDF5 package/version not specified"
elif _foamIsNone "$PACKAGE" || _foamIsSystem "$PACKAGE"
then
echo "Using none/system (skip ThirdParty build of HDF5)"
exit 0
fi
# Known build issues for mingw (various things)
case "$WM_COMPILER" in
(Mingw*)
if [ "$optForce" = true ]
then
echo "Warning: hdf5 - likely compilation issues with $WM_COMPILER"
else
echo "Skipping hdf5 - likely compilation issues with $WM_COMPILER"
exit 0
fi
;;
esac
#------------------------------------------------------------------------------
#
# Build HDF5
# *PACKAGE : name-version of the package
# *SOURCE : location of original sources
# *PREFIX : installation directory
PKG_SOURCE="$(findSourceDir "$PACKAGE")"
PACKAGE="$(basename "$PACKAGE")"
PKG_PREFIX="$installBASE/$PACKAGE"
export GIT_DIR="$PKG_SOURCE/.git"
: "${FOAM_MPI:=dummy}"
# FUTURE:
#
# Manual installation of parallel libraries
# from libdir to -> $FOAM_EXT_LIBBIN/$FOAM_MPI
#
echo
echo ========================================
echo "Build hdf5 library $PACKAGE for $FOAM_MPI"
echo
# Needs future adjustment
# - for mpi-specific library locations
if [ -z "$optForce" ] \
&& [ -f "$PKG_PREFIX/include/hdf5.h" ] \
&& {
[ -r "$PKG_PREFIX/lib/libhdf5$EXT_SO" ] \
|| [ -r "$PKG_PREFIX/lib$WM_COMPILER_LIB_ARCH/libhdf5$EXT_SO" ]
}
then
echo " HDF5 already built : $PKG_PREFIX"
else
# CMake options often lag the configure ones
echo "Starting build: $PACKAGE (using cmake)"
echo
(
PKG_BUILD="$buildBASE/$PACKAGE"
cd "$PKG_SOURCE" || exit
applyPatch "$PACKAGE" "$PKG_SOURCE"
# Remove any existing build folder and recreate
rm -rf "$PKG_PREFIX"
rm -rf "$PKG_BUILD"
mkdir -p "$PKG_BUILD"
# May not work properly with FOAM_MPI = dummy
if [ "$FOAM_MPI" != dummy ]
then
CC=mpicc
CXX=mpicxx
fi
cmake=$(findCMake)
# Installs into lib64/
cd "$PKG_BUILD" && set -x && \
${cmake:?} \
-DCMAKE_INSTALL_PREFIX="$PKG_PREFIX" \
-DCMAKE_BUILD_TYPE=Release \
-DHDF5_BUILD_FORTRAN=FALSE \
-DHDF5_BUILD_TESTING=FALSE \
-DHDF5_BUILD_STATIC_LIBS=FALSE \
${WM_QUIET:+-DCMAKE_RULE_MESSAGES=OFF} \
"$PKG_SOURCE" \
&& make -j $WM_NCOMPPROCS all \
&& make install \
&& echo "Built: $PACKAGE"
) || {
echo "Error building: $PACKAGE"
exit 1
}
fi
# -----------------------------------------------------------------------------
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