Allrun

#!/bin/bash
cd "${0%/*}" || exit                                # Run from this directory
. ${WM_PROJECT_DIR:?}/bin/tools/RunFunctions        # Tutorial run functions
. ${WM_PROJECT_DIR:?}/bin/tools/CleanFunctions      # Tutorial clean functions
#------------------------------------------------------------------------------

./Allrun.pre

cp -rf $FOAM_TUTORIALS/resources/dataset/atm-Arnqvist-2015 system/.

RASmodel="kEpsilon"    # kOmegaSST

declare -A stabilityStates
declare -A Lmaxs
declare -A qPlants

stabilityStates[0]="veryStable"
stabilityStates[1]="stable"
stabilityStates[2]="slightlyStable"
stabilityStates[3]="neutral"
stabilityStates[4]="slightlyUnstable"
stabilityStates[5]="unstable"

Lmaxs[0]="5.0"
Lmaxs[1]="13.0"
Lmaxs[2]="25.5"
Lmaxs[3]="41.0"
Lmaxs[4]="80.75"
Lmaxs[5]="200.0"

qPlants[0]="-20.0"
qPlants[1]="-9.0"
qPlants[2]="-5.0"
qPlants[3]="0.0"
qPlants[4]="15.0"
qPlants[5]="60.0"


for i in "${!stabilityStates[@]}"
do
    state=${stabilityStates[$i]}
    Lmax=${Lmaxs[$i]}
    qPlant=${qPlants[$i]}

    echo "    # Computations for the atmopsheric stability = $state:"
    echo "        ## Lmax = $Lmax [m], qPlant = $qPlant [-]"
    echo ""

    sed -e "s|RAS_MODEL|$RASmodel|g" \
        constant/turbulenceProperties.template \
      > constant/turbulenceProperties
    sed -e "s|L_MAX|$Lmax|g" constant/fvOptions.template > constant/fvOptions
    sed -e "s|Q_PLANT|$qPlant|g" 0.orig/qPlant.template > 0/qPlant
    sed -e "s|Q_PLANT|$qPlant|g" \
        system/setFieldsDict.template \
      > system/setFieldsDict

    runApplication decomposePar
    runParallel -s parallel renumberMesh -overwrite
    runParallel -s $i setFields
    runParallel $(getApplication)
    runParallel postProcess -funcs \
        "(minMaxComponents(U) minMaxMagnitude(U))" -latestTime
    runParallel redistributePar -reconstruct -latestTime

    # Collect results into $resultDir
    resultDir="results/$state"
    mkdir -p $resultDir
    timeDir=$(foamListTimes -latestTime)
    mv -f $timeDir postProcessing log.* $resultDir
    cp -rf system/fv* constant/fv* constant/*Properties 0 $resultDir

    cleanTimeDirectories
    rm -rf processor*
done

#------------------------------------------------------------------------------