small updates and removing X permissions

0c1d0884 · Andrew Heather · af88d9be · 0c1d0884 · 0c1d0884 · 0c1d0884
Commit 0c1d0884 authored Jun 23, 2008 by Andrew Heather
--- a/applications/solvers/molecularDynamics/gnemdFoam/gnemdFoam.C
+++ b/applications/solvers/molecularDynamics/gnemdFoam/gnemdFoam.C
--- a/applications/solvers/molecularDynamics/mdEquilibrationFoam/mdEquilibrationFoam.C
+++ b/applications/solvers/molecularDynamics/mdEquilibrationFoam/mdEquilibrationFoam.C
--- a/applications/solvers/molecularDynamics/mdEquilibrationFoam/readmdEquilibrationDict.H
+++ b/applications/solvers/molecularDynamics/mdEquilibrationFoam/readmdEquilibrationDict.H
--- a/src/lagrangian/Allwmake
+++ b/src/lagrangian/Allwmake
@@ -5,4 +5,6 @@ wmake libso basic
 wmake libso solidParticle
 wmake libso intermediate
 wmake libso dieselSpray
-wmake libso molecule
+(cd molecularDynamics && wmake libso potential)
+(cd molecularDynamics && wmake libso molecule)
+
--- a/src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulator.C
+++ b/src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulator.C
--- a/src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulator.H
+++ b/src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulator.H
--- a/src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulatorI.H
+++ b/src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulatorI.H
--- a/src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulatorIO.C
+++ b/src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulatorIO.C
--- a/src/lagrangian/molecularDynamics/molecule/distribution/distribution.C
+++ b/src/lagrangian/molecularDynamics/molecule/distribution/distribution.C
--- a/src/lagrangian/molecularDynamics/molecule/distribution/distribution.H
+++ b/src/lagrangian/molecularDynamics/molecule/distribution/distribution.H
--- a/src/lagrangian/molecularDynamics/molecule/distribution/distributionI.H
+++ b/src/lagrangian/molecularDynamics/molecule/distribution/distributionI.H
--- a/src/lagrangian/molecularDynamics/molecule/distribution/distributionIO.C
+++ b/src/lagrangian/molecularDynamics/molecule/distribution/distributionIO.C
--- a/src/lagrangian/molecularDynamics/molecule/mdTools/averageMDFields.H
+++ b/src/lagrangian/molecularDynamics/molecule/mdTools/averageMDFields.H
--- a/src/lagrangian/molecularDynamics/molecule/mdTools/calculateMDFields.H
+++ b/src/lagrangian/molecularDynamics/molecule/mdTools/calculateMDFields.H
--- a/src/lagrangian/molecularDynamics/molecule/mdTools/createMDFields.H
+++ b/src/lagrangian/molecularDynamics/molecule/mdTools/createMDFields.H
--- a/src/lagrangian/molecularDynamics/molecule/mdTools/md.H
+++ b/src/lagrangian/molecularDynamics/molecule/mdTools/md.H
--- a/src/lagrangian/molecularDynamics/molecule/mdTools/meanMomentumEnergyAndNMols.H
+++ b/src/lagrangian/molecularDynamics/molecule/mdTools/meanMomentumEnergyAndNMols.H
--- a/src/lagrangian/molecularDynamics/molecule/mdTools/resetMDFields.H
+++ b/src/lagrangian/molecularDynamics/molecule/mdTools/resetMDFields.H
--- a/src/lagrangian/molecularDynamics/molecule/mdTools/temperatureAndPressure.H
+++ b/src/lagrangian/molecularDynamics/molecule/mdTools/temperatureAndPressure.H
--- a/src/lagrangian/molecularDynamics/molecule/mdTools/temperatureAndPressureVariables.H
+++ b/src/lagrangian/molecularDynamics/molecule/mdTools/temperatureAndPressureVariables.H