Merge branch 'master' of ssh://noisy/home/noisy3/OpenFOAM/OpenFOAM-dev

applications/solvers/compressible/rhoCentralFoam/rhoCentralDyMFoam/rhoCentralDyMFoam.C

@@ -157,7 +157,7 @@ int main(int argc, char *argv[])
           + aphiv_neg*(rho_neg*(e_neg + 0.5*magSqr(U_neg)) + p_neg)
           + aSf*p_pos - aSf*p_neg;
 
-        volTensorField tauMC("tauMC", mu*dev2(fvc::grad(U)().T()));
+        volTensorField tauMC("tauMC", mu*dev2(Foam::T(fvc::grad(U))));
 
         // --- Solve density
         Info<< max(rho) << " " << min(rho) << endl;

applications/solvers/compressible/rhoCentralFoam/rhoCentralFoam.C

@@ -139,7 +139,7 @@ int main(int argc, char *argv[])
           + aphiv_neg*(rho_neg*(e_neg + 0.5*magSqr(U_neg)) + p_neg)
           + aSf*p_pos - aSf*p_neg;
 
-        volTensorField tauMC("tauMC", mu*dev2(fvc::grad(U)().T()));
+        volTensorField tauMC("tauMC", mu*dev2(Foam::T(fvc::grad(U))));
 
         // --- Solve density
         solve(fvm::ddt(rho) + fvc::div(phi));

applications/utilities/mesh/manipulation/setSet/setSet.C

@@ -482,7 +482,7 @@ bool doCommand
             topoSet& currentSet = currentSetPtr();
 
             Info<< "    Set:" << currentSet.name()
-                << "  Size:" << currentSet.size()
+                << "  Size:" << returnReduce(currentSet.size(), sumOp<label>())
                 << "  Action:" << actionName
                 << endl;
 
@@ -579,7 +579,9 @@ bool doCommand
                     );
 
                     Info<< "    Writing " << currentSet.name()
-                        << " (size " << currentSet.size() << ") to "
+                        << " (size "
+                        << returnReduce(currentSet.size(), sumOp<label>())
+                        << ") to "
                         << currentSet.instance()/currentSet.local()
                            /currentSet.name()
                         << " and to vtk file " << vtkName << endl << endl;
@@ -589,7 +591,9 @@ bool doCommand
                 else
                 {
                     Info<< "    Writing " << currentSet.name()
-                        << " (size " << currentSet.size() << ") to "
+                        << " (size "
+                        << returnReduce(currentSet.size(), sumOp<label>())
+                        << ") to "
                         << currentSet.instance()/currentSet.local()
                            /currentSet.name() << endl << endl;
                 }
@@ -642,9 +646,9 @@ enum commandStatus
 void printMesh(const Time& runTime, const polyMesh& mesh)
 {
     Info<< "Time:" << runTime.timeName()
-        << "  cells:" << mesh.nCells()
-        << "  faces:" << mesh.nFaces()
-        << "  points:" << mesh.nPoints()
+        << "  cells:" << mesh.globalData().nTotalCells()
+        << "  faces:" << mesh.globalData().nTotalFaces()
+        << "  points:" << mesh.globalData().nTotalPoints()
         << "  patches:" << mesh.boundaryMesh().size()
         << "  bb:" << mesh.bounds() << nl;
 }

applications/utilities/parallelProcessing/redistributeMeshPar/redistributeMeshPar.C

@@ -561,10 +561,6 @@ int main(int argc, char *argv[])
         mkDir(args.path());
     }
 
-    // Switch timeStamp checking to one which does not do any
-    // parallel sync for same reason
-    regIOobject::fileModificationChecking = regIOobject::timeStamp;
-
 #   include "createTime.H"
 
 

applications/utilities/surface/surfaceCheck/surfaceCheck.C

@@ -212,7 +212,7 @@ int main(int argc, char *argv[])
     // write bounding box corners
     if (args.optionFound("blockMesh"))
     {
-        pointField cornerPts = boundBox(surf.points()).corners();
+        pointField cornerPts = boundBox(surf.points()).points();
 
         Info<<"// blockMeshDict info" << nl;
 

applications/utilities/surface/surfaceInertia/surfaceInertia.C

@@ -51,7 +51,7 @@ using namespace Foam;
 void massPropertiesSolid
 (
     const pointField& pts,
-    const triFaceList triFaces,
+    const triFaceList& triFaces,
     scalar density,
     scalar& mass,
     vector& cM,
@@ -208,7 +208,7 @@ void massPropertiesSolid
 void massPropertiesShell
 (
     const pointField& pts,
-    const triFaceList triFaces,
+    const triFaceList& triFaces,
     scalar density,
     scalar& mass,
     vector& cM,

etc/controlDict

@@ -593,6 +593,7 @@ DebugSwitches
     muSgsSpalartAllmarasWallFunction 0;
     multiDirRefinement  0;
     multiHoleInjector   0;
+    multiLevel          1;
     multivariateSelection 0;
     mutRoughWallFunction 0;
     mutSpalartAllmarasStandardRoughWallFunction  0;

etc/settings.sh

@@ -259,7 +259,8 @@ unset MPI_ARCH_PATH MPI_HOME
 
 case "$WM_MPLIB" in
 OPENMPI)
-    mpi_version=openmpi-1.4.1
+    #mpi_version=openmpi-1.4.1
+    mpi_version=openmpi-1.5
     export MPI_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$mpi_version
 
     # Tell OpenMPI where to find its install directory

src/OpenFOAM/algorithms/MeshWave/FaceCellWave.C

@@ -40,8 +40,7 @@ const Foam::scalar
 Foam::FaceCellWave<Type, TrackingData>::geomTol_ = 1e-6;
 
 template <class Type, class TrackingData>
-const Foam::scalar
-Foam::FaceCellWave<Type, TrackingData>::propagationTol_ = 0.01;
+Foam::scalar Foam::FaceCellWave<Type, TrackingData>::propagationTol_ = 0.01;
 
 template <class Type, class TrackingData>
 Foam::label Foam::FaceCellWave<Type, TrackingData>::dummyTrackData_ = 12345;
@@ -516,8 +515,8 @@ void Foam::FaceCellWave<Type, TrackingData>::handleProcPatches()
                 refCast<const processorPolyPatch>(patch);
 
             // Allocate buffers
-            labelList receiveFaces(patch.size());
-            List<Type> receiveFacesInfo(patch.size());
+            labelList receiveFaces;
+            List<Type> receiveFacesInfo;
 
             {
                 UIPstream fromNeighbour(procPatch.neighbProcNo(), pBufs);
@@ -675,8 +674,7 @@ Foam::FaceCellWave<Type, TrackingData>::FaceCellWave
     hasCyclicPatches_(hasCyclicPatch()),
     nEvals_(0),
     nUnvisitedCells_(mesh_.nCells()),
-    nUnvisitedFaces_(mesh_.nFaces()),
-    iter_(0)
+    nUnvisitedFaces_(mesh_.nFaces())
 {}
 
 
@@ -707,16 +705,15 @@ Foam::FaceCellWave<Type, TrackingData>::FaceCellWave
     hasCyclicPatches_(hasCyclicPatch()),
     nEvals_(0),
     nUnvisitedCells_(mesh_.nCells()),
-    nUnvisitedFaces_(mesh_.nFaces()),
-    iter_(0)
+    nUnvisitedFaces_(mesh_.nFaces())
 {
     // Copy initial changed faces data
     setFaceInfo(changedFaces, changedFacesInfo);
 
     // Iterate until nothing changes
-    iterate(maxIter);
+    label iter = iterate(maxIter);
 
-    if ((maxIter > 0) && (iter_ >= maxIter))
+    if ((maxIter > 0) && (iter >= maxIter))
     {
         FatalErrorIn
         (
@@ -796,7 +793,7 @@ Foam::label Foam::FaceCellWave<Type, TrackingData>::faceToCell()
             );
         }
 
-        // Neighbour. Hack for check if face has neighbour.
+        // Neighbour.
         if (faceI < nInternalFaces)
         {
             cellI = neighbour[faceI];
@@ -927,11 +924,13 @@ Foam::label Foam::FaceCellWave<Type, TrackingData>::iterate(const label maxIter)
         handleProcPatches();
     }
 
-    while (iter_ < maxIter)
+    label iter = 0;
+
+    while (iter < maxIter)
     {
         if (debug)
         {
-            Pout<< " Iteration " << iter_ << endl;
+            Pout<< " Iteration " << iter << endl;
         }
 
         nEvals_ = 0;
@@ -963,10 +962,11 @@ Foam::label Foam::FaceCellWave<Type, TrackingData>::iterate(const label maxIter)
             break;
         }
 
-        ++iter_;
+        ++iter;
     }
 
-    return nUnvisitedCells_;
+    return iter;
 }
 
+
 // ************************************************************************* //

src/OpenFOAM/algorithms/MeshWave/FaceCellWave.H

@@ -114,9 +114,6 @@ class FaceCellWave
         label nUnvisitedCells_;
         label nUnvisitedFaces_;
 
-        //- Iteration counter
-        label iter_;
-
 
     // Private Member Functions
 
@@ -232,7 +229,7 @@ class FaceCellWave
       // Private static data
 
             static const scalar geomTol_;
-            static const scalar propagationTol_;
+            static scalar propagationTol_;
 
             //- Used as default trackdata value to satisfy default template
             //  argument.
@@ -340,8 +337,8 @@ public:
             //  counted double)
             label cellToFace();
 
-            //- Iterate until no changes or maxIter reached. Returns number of
-            //  unset cells (see getUnsetCells)
+            //- Iterate until no changes or maxIter reached.  Returns actual
+            //  number of iterations.
             label iterate(const label maxIter);
 
 };

src/OpenFOAM/algorithms/MeshWave/MeshWave.H

@@ -134,8 +134,8 @@ public:
             return calc_.data();
         }
 
-        //- Iterate until no changes or maxIter reached. Returns number of
-        //  unset cells (see getUnsetCells)
+        //- Iterate until no changes or maxIter reached. Returns actual
+        //  number of iterations.
         label iterate(const label maxIter)
         {
             return calc_.iterate(maxIter);

src/OpenFOAM/db/IOobjects/IOdictionary/IOdictionary.C

@@ -66,6 +66,10 @@ void Foam::IOdictionary::readFile(const bool masterOnly)
           : Pstream::treeCommunication()
         );
 
+        // Master reads headerclassname from file. Make sure this gets
+        // transfered as well as contents.
+        Pstream::scatter(comms, const_cast<word&>(headerClassName()));
+        Pstream::scatter(comms, note());
 
         // Get my communication order
         const Pstream::commsStruct& myComm = comms[Pstream::myProcNo()];

src/OpenFOAM/db/regIOobject/regIOobjectRead.C

@@ -201,6 +201,11 @@ bool Foam::regIOobject::read()
           : Pstream::treeCommunication()
         );
 
+        // Master reads headerclassname from file. Make sure this gets
+        // transfered as well as contents.
+        Pstream::scatter(comms, const_cast<word&>(headerClassName()));
+        Pstream::scatter(comms, note());
+
 
         // Get my communication order
         const Pstream::commsStruct& myComm = comms[Pstream::myProcNo()];

src/OpenFOAM/fields/GeometricFields/GeometricTensorField/GeometricTensorField.C

@@ -36,6 +36,7 @@ namespace Foam
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
+UNARY_FUNCTION(tensor, tensor, T, transform)
 UNARY_FUNCTION(scalar, tensor, tr, transform)
 UNARY_FUNCTION(sphericalTensor, tensor, sph, transform)
 UNARY_FUNCTION(symmTensor, tensor, symm, transform)

src/OpenFOAM/fields/GeometricFields/GeometricTensorField/GeometricTensorField.H

@@ -49,6 +49,7 @@ namespace Foam
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
+UNARY_FUNCTION(tensor, tensor, T, transform)
 UNARY_FUNCTION(scalar, tensor, tr, transform)
 UNARY_FUNCTION(sphericalTensor, tensor, sph, transform)
 UNARY_FUNCTION(symmTensor, tensor, symm, transform)

src/OpenFOAM/global/argList/argList.C

@@ -736,7 +736,7 @@ Foam::argList::argList
         {
             Info<< "Slaves : " << slaveProcs << nl;
             if (roots.size())
-            {                
+            {
                 Info<< "Roots  : " << roots << nl;
             }
             Info<< "Pstream initialized with:" << nl
@@ -770,7 +770,8 @@ Foam::argList::argList
 
     if (bannerEnabled)
     {
-        Info<< "Monitoring run-time modified files using "
+        Info<< "fileModificationChecking : "
+            << "Monitoring run-time modified files using "
             << regIOobject::fileCheckTypesNames
                 [
                     regIOobject::fileModificationChecking

src/OpenFOAM/interpolations/interpolationTable/interpolationTable.C

@@ -284,10 +284,8 @@ Type Foam::interpolationTable<Type>::rateOfChange(const scalar value) const
             case interpolationTable::REPEAT:
             {
                 // adjust lookupValue to >= minLimit
-                while (lookupValue < minLimit)
-                {
-                    lookupValue += maxLimit;
-                }
+                scalar span = maxLimit-minLimit;
+                lookupValue = fmod(lookupValue-minLimit, span) + minLimit;
                 break;
             }
         }
@@ -325,10 +323,8 @@ Type Foam::interpolationTable<Type>::rateOfChange(const scalar value) const
             case interpolationTable::REPEAT:
             {
                 // adjust lookupValue <= maxLimit
-                while (lookupValue > maxLimit)
-                {
-                    lookupValue -= maxLimit;
-                }
+                scalar span = maxLimit-minLimit;
+                lookupValue = fmod(lookupValue-minLimit, span) + minLimit;
                 break;
             }
         }
@@ -540,11 +536,9 @@ Type Foam::interpolationTable<Type>::operator()(const scalar value) const
             }
             case interpolationTable::REPEAT:
             {
-                // adjust lookupValue to >= minLimin
-                while (lookupValue < minLimit)
-                {
-                    lookupValue += maxLimit;
-                }
+                // adjust lookupValue to >= minLimit
+                scalar span = maxLimit-minLimit;
+                lookupValue = fmod(lookupValue-minLimit, span) + minLimit;
                 break;
             }
         }
@@ -582,10 +576,8 @@ Type Foam::interpolationTable<Type>::operator()(const scalar value) const
             case interpolationTable::REPEAT:
             {
                 // adjust lookupValue <= maxLimit
-                while (lookupValue > maxLimit)
-                {
-                    lookupValue -= maxLimit;
-                }
+                scalar span = maxLimit-minLimit;
+                lookupValue = fmod(lookupValue-minLimit, span) + minLimit;
                 break;
             }
         }

src/OpenFOAM/matrices/solution/solution.C

@@ -84,7 +84,11 @@ Foam::solution::solution
             dictName,
             obr.time().system(),
             obr,
-            IOobject::MUST_READ_IF_MODIFIED,
+            (
+                obr.readOpt() == IOobject::MUST_READ
+              ? IOobject::MUST_READ_IF_MODIFIED
+              : obr.readOpt()
+            ),
             IOobject::NO_WRITE
         )
     ),
@@ -94,7 +98,14 @@ Foam::solution::solution
     defaultRelaxationFactor_(0),
     solvers_(ITstream("solvers", tokenList())())
 {
-    read(solutionDict());
+    if
+    (
+        readOpt() == IOobject::MUST_READ
+     || readOpt() == IOobject::MUST_READ_IF_MODIFIED
+    )
+    {
+        read(solutionDict());
+    }
 }
 
 

src/OpenFOAM/meshes/boundBox/boundBox.C

@@ -111,7 +111,7 @@ Foam::boundBox::boundBox(Istream& is)
 
 // * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * * //
 
-Foam::tmp<Foam::pointField> Foam::boundBox::corners() const
+Foam::tmp<Foam::pointField> Foam::boundBox::points() const
 {
     tmp<pointField> tPts = tmp<pointField>(new pointField(8));
     pointField& pt = tPts();

src/OpenFOAM/meshes/boundBox/boundBox.H

@@ -177,7 +177,7 @@ public:
             }
 
             //- Return corner points in an order corresponding to a 'hex' cell
-            tmp<pointField> corners() const;
+            tmp<pointField> points() const;
 
         // Query