STYLE: cleanup some shell script syntax

bin/foamEndJob

@@ -85,7 +85,8 @@ setRawEntry() {
     oldLine=`echo "$oldNumLine" | sed -e 's/^[^:]*://'`
     oldKey=`getKey "$oldLine"`
     oldVal=`getRawEntry $1 "$2"`
-    if [ ! "$oldKey" -o ! "$oldVal" -o ! "$oldLine" ]; then
+    if [ ! "$oldKey" -o ! "$oldVal" -o ! "$oldLine" ]
+    then
         echo "setRawStringEntry: entry $2 not found in $1"
         echo "oldKey=$oldKey"
         echo "lineNo=$lineNo"
@@ -134,9 +135,12 @@ getBoolEntry()
 }
 
 # newerFile file1 file2
-newerFile() {
+# ... could also use   if [ $file1 -nt $file2 ] ...
+newerFile()
+{
     latest=`ls -1 -t $1 $2 2> /dev/null | head -1`
-    if [ "$latest" = $1 ]; then
+    if [ "$latest" = $1 ]
+    then
         return 0
     else
         return 1
@@ -149,8 +153,8 @@ processExists() {
     ps -u $LOGNAME -o 'pid' | fgrep $1 >/dev/null
 }
 
-printUsage() {
-cat << USAGELABEL
+usage() {
+cat << USAGE
 Usage: $PROGNAME [-n] <root> <case> <pid>
           or
        $PROGNAME -c <root> <case>
@@ -165,7 +169,8 @@ finish. Restores original controlDict if
 
 The -c option clears any outstanding $PROGNAME for the case.
 
-USAGELABEL
+USAGE
+    exit 1
 }
 
 
@@ -174,7 +179,8 @@ restoreDict() {
     trap 2 3 15
 
     echo "$PROGNAME : Restoring controlDict from controlDict_bak."
-    if [ -r ${controlDict}_bak ]; then
+    if [ -r ${controlDict}_bak ]
+    then
         cp ${controlDict}_bak $controlDict
     fi
 
@@ -208,61 +214,69 @@ esac
 #
 # Initial checks
 #
-if [ $# -lt 3 ]; then
-    printUsage
-    exit 1
+if [ $# -lt 3 ]
+then
+    usage
 fi
+
 STOPNOW=''
-if [ $1 = '-n' ]; then
+if [ $1 = '-n' ]
+then
     STOPNOW='yes'
     shift
 fi
 CLEAR=''
-if [ $1 = '-c' ]; then
+if [ $1 = '-c' ]
+then
     CLEAR='yes'
     shift
-    if [ $# -ne 2 ]; then
-        printUsage
-        exit 1
+    if [ $# -ne 2 ]
+    then
+        usage
     fi
     ROOT=$1
     CASE=$2
 else
-    if [ $# -ne 3 ]; then
-        printUsage
-        exit 1
+    if [ $# -ne 3 ]
+    then
+        usage
     fi
     ROOT=$1
     CASE=$2
     PID=$3
 fi
-CASE=`echo $CASE | sed -e 's!/.*!!'`       #strip of processorXXX ending
+CASE=`echo $CASE | sed -e 's!/.*!!'`       # strip of processorXXX ending
 
 #- Pid actually running
-if [ ! "$CLEAR" ]; then
+if [ ! "$CLEAR" ]
+then
     processExists $PID
-    if [ $? -ne 0 ] ;then
+    if [ $? -ne 0 ]
+    then
         echo "$PROGNAME : process $PID not running."
         exit 1
     fi
 fi
 
 #- case directory writeable
-if [ ! -w $ROOT/$CASE ]; then
+if [ ! -w $ROOT/$CASE ]
+then
     echo "$PROGNAME : $ROOT/$CASE is not writeable."
     exit 1
 fi
 
 #- Controldict writeable
 controlDict=$ROOT/$CASE/system/controlDict
-if [ ! -w  $controlDict ]; then
+if [ ! -w  $controlDict ]
+then
     echo "$PROGNAME : $controlDict is not writeable."
     exit 1
 fi
 
 #- runTimeModifiable
 getBoolEntry $controlDict 'runTimeModifiable'
-if [ $? -ne 0 ]; then
+if [ $? -ne 0 ]
+then
     echo "$PROGNAME : runTimeModifiable not true in dictionary $controlDict."
     exit 1
 fi
@@ -270,12 +284,14 @@ fi
 #
 #- Check if another foamEndJob running
 #
-if [ "$CLEAR" ]; then
+if [ "$CLEAR" ]
+then
     pidFiles=`ls $ROOT/$CASE/.foamEndJob* 2>/dev/null`
     for pidFile in $pidFiles
     do
         pid=`cat $pidFile`
-        if [ "$pid" ]; then
+        if [ "$pid" ]
+        then
             echo "$PROGNAME : found $PROGNAME (pid $pid) for Foam process"
             echo "  root: $ROOT"
             echo "  case: $CASE"
@@ -288,11 +304,14 @@ if [ "$CLEAR" ]; then
 fi
 
 pidFile=$ROOT/$CASE/.foamEndJob${PID}
-if [ -f $pidFile ]; then
+if [ -f $pidFile ]
+then
     pid=`cat $pidFile`
-    if [ "$pid" ]; then
+    if [ "$pid" ]
+    then
         processExists $pid
-        if [ $? -eq 0 ] ;then
+        if [ $? -eq 0 ]
+        then
             echo "$PROGNAME : found running $PROGNAME (pid $pid) for Foam process"
             echo "  root: $ROOT"
             echo "  case: $CASE"
@@ -314,28 +333,32 @@ echo $$ > $pidFile
 
 #- startTime
 startTime=`getEntry $controlDict 'startTime'`
-if [ ! "$startTime" ]; then
+if [ ! "$startTime" ]
+then
     echo "$PROGNAME : startTime not set in dictionary $controlDict."
     exit 1
 fi
 
 #- Write interval
 writeInterval=`getEntry $controlDict 'writeInterval'`
-if [ ! "$writeInterval" ]; then
+if [ ! "$writeInterval" ]
+then
     echo "$PROGNAME : writeInterval not set in dictionary $controlDict."
     exit 1
 fi
 
 #- stopAt
 stopAt=`getEntry $controlDict 'stopAt'`
-if [ ! "$stopAt" ]; then
+if [ ! "$stopAt" ]
+then
     echo "$PROGNAME : stopAt not set in dictionary $controlDict."
     exit 1
 fi
 
 #- endTime
 endTime=`getEntry $controlDict 'endTime'`
-if [ ! "$endTime" ]; then
+if [ ! "$endTime" ]
+then
     echo "$PROGNAME : endTime not set in dictionary $controlDict."
     exit 1
 fi
@@ -353,7 +376,8 @@ cp $controlDict ${controlDict}_bak
 #- Set up handler to restore controlDict
 trap restoreDict 2 3 15
 
-if [ "$STOPNOW" ]; then
+if [ "$STOPNOW" ]
+then
     setRawEntry  $controlDict 'stopAt' 'nextWrite'
     setRawEntry  $controlDict 'writeInterval' '1'
 
@@ -385,7 +409,8 @@ if newerFile ${controlDict} ${controlDict}_bak; then
     iter=0
     while newerFile ${controlDict} ${controlDict}_bak
     do
-        if [ $iter -ge 120 ]; then
+        if [ $iter -ge 120 ]
+        then
             #- 120*5 sec = 10 mins passed. Give up
             echo "$PROGNAME : File date not yet ok after 10 mins. Giving up."
             break
@@ -412,22 +437,25 @@ while true
 do
     sleep 5
 
-    if [ ! -r ${controlDict}_bak ]; then
+    if [ ! -r ${controlDict}_bak ]
+    then
         echo "$PROGNAME : ${controlDict}_bak dissappeared. Exiting without restore."
         exit 1
     fi
 
-    if newerFile ${controlDict} ${controlDict}_bak; then
+    if newerFile ${controlDict} ${controlDict}_bak
+    then
         echo "$PROGNAME : ${controlDict} modified externally. Exiting without restore."
         exit 0
     fi
 
     processExists $PID
-    if [ $? -ne 0 ] ;then
+    if [ $? -ne 0 ]
+    then
         #- Job finished
         break
     fi
-    #echo "Foam job $PID still running ..."
+    # echo "Foam job $PID still running ..."
 done
 
 #- Dictionary restore

bin/foamJob

@@ -30,14 +30,14 @@
 #
 #------------------------------------------------------------------------------
 usage() {
-   while [ "$#" -ge 1 ]; do echo "$1"; shift; done
-   cat<<USAGE
+    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
+    cat<<USAGE
 
 Usage: ${0##*/} [OPTION] <application> ...
 options:
   -case <dir>       specify alternative case directory, default is the cwd
-  -s                also sends output to screen
   -p                parallel run of processors
+  -s                also sends output to screen
   -v <ver>          specify OpenFOAM version
   -help             print the usage
 
@@ -45,56 +45,46 @@ options:
   Redirects the output to 'log' in the case directory
 
 USAGE
-   exit 1
+    exit 1
 }
 
 unset version
 
 # replacement for possibly buggy 'which'
 findExec() {
-   case "$1" in
-   */*)
-      if [ -x "$1" ] ; then
-         echo "$1"
-         return 0
-      fi
-      ;;
-   esac
-
-   oldIFS=$IFS
-   IFS=':'
-   for d in $PATH
-   do
-      # echo "testing: $d/$1" 1>&2
-      if [ -x "$d/$1" -a ! -d "$d/$1" ] ; then
-         # echo "Found exec: $d/$1" 1>&2
-         IFS=$oldIFS
-         echo "$d/$1"
-         return 0
-      fi
-   done
-   IFS=$oldIFS
-   echo ""
-   return 1
-}
-
-# grep for $1
-getPID() {
-   ps -u $LOGNAME -o 'pid,args' | fgrep "$1 " | fgrep -v grep | head -1 | awk '{ print $1 }'
+    case "$1" in
+    */*)
+        if [ -x "$1" ]
+        then
+            echo "$1"
+            return 0
+        fi
+        ;;
+    esac
+
+    oldIFS=$IFS
+    IFS=':'
+    for d in $PATH
+    do
+        # echo "testing: $d/$1" 1>&2
+        if [ -x "$d/$1" -a ! -d "$d/$1" ]
+        then
+            # echo "Found exec: $d/$1" 1>&2
+            IFS=$oldIFS
+            echo "$d/$1"
+            return 0
+        fi
+     done
+     IFS=$oldIFS
+     echo ""
+     return 1
 }
 
 
-consultGuide() {
-cat<<EOF
-
-Please consult the User Guide for details of parallel running
-EOF
-}
 
 # MAIN SCRIPT
 #~~~~~~~~~~~~
-SCREEN=no
-PARALLEL=no
+unset parallelOpt screenOpt
 
 
 # parse options
@@ -110,12 +100,12 @@ do
       shift 2
       cd "$caseDir" 2>/dev/null || usage "directory does not exist:  '$caseDir'"
       ;;
-   -s)
-      SCREEN=yes
+   -p)
+      parallelOpt=true
       shift
       ;;
-   -p)
-      PARALLEL=yes
+   -s)
+      screenOpt=true
       shift
       ;;
    -v)
@@ -136,100 +126,119 @@ do
    esac
 done
 
-if [ "$#" -lt 1 ]; then
-   usage "No application specified"
+if [ "$#" -lt 1 ]
+then
+    usage "No application specified"
 fi
 
 # use foamExec for a specified version and for remote (parallel) runs
-if [ -n "$version" -o "$PARALLEL" = yes ]; then
-   APPLICATION=`findExec foamExec`
-   if [ $? -ne 0 ]; then
-      usage "'foamExec' not found"
-   fi
-   if [ -n "$version" ]; then
-      APPLICATION="$APPLICATION -v $version"
-   fi
+if [ -n "$version" -o "$parallelOpt" = true ]
+then
+    APPLICATION=`findExec foamExec`
+    if [ $? -ne 0 ]
+    then
+        usage "'foamExec' not found"
+    fi
+    if [ -n "$version" ]
+    then
+        APPLICATION="$APPLICATION -v $version"
+    fi
 else
-   APPLICATION=`findExec $1`
-   if [ $? -ne 0 ]; then
-      usage "Application '$1' executable not found"
-   fi
-   echo "Application : $1"
-   shift
+    APPLICATION=`findExec $1`
+    if [ $? -ne 0 ]
+    then
+        usage "Application '$1' executable not found"
+    fi
+    echo "Application : $1"
+    shift
 fi
 
-if [ "$PARALLEL" = no ]; then
-#
-#   RUN ON SINGLE PROCESSOR
-#
-    if [ "$SCREEN" = no ]; then
-       echo "Executing: $APPLICATION $@ > log 2>&1 &"
-       $APPLICATION $@ > log 2>&1 &
+
+if [ "$parallelOpt" = true ]
+then
+    # parallel
+    # ~~~~~~~~
+
+    #
+    # is the case decomposed?
+    #
+    if [ -r "processor0" ]
+    then
+        NPROCS="`/bin/ls -1d processor* | wc -l`"
     else
-       echo "Executing: $APPLICATION $@ | tee log &"
-       $APPLICATION $@ | tee log &
-       wait $!
+        echo "Case is not currently decomposed"
+        if [ -r system/decomposeParDict ]
+        then
+            echo "system/decomposeParDict exists"
+            echo "Try decomposing with \"foamJob decomposePar\""
+            exit 1
+        else
+            echo "Cannot find system/decomposeParDict file required to decompose the case for parallel running."
+            echo "Please consult the User Guide for details of parallel running"
+            exit 1
+        fi
     fi
-else
 
-#
-#   IS THE CASE DECOMPOSED?
-#
-   if [ -r "processor0" ] ; then
-      NPROCS="`/bin/ls -1d processor* | wc -l`"
-   else
-      echo "Case is not currently decomposed"
-      if [ -r system/decomposeParDict ] ; then
-         echo "system/decomposeParDict exists"
-         echo "Try decomposing with \"foamJob decomposePar\""
-         exit 1
-      else
-         echo "Cannot find system/decomposeParDict file required to decompose the case for parallel running."
-         consultGuide
-         exit 1
-      fi
-   fi
-#
-#   LOCATE MPIRUN
-#
-   mpirun=`findExec mpirun`
-   if [ $? -ne 0 ]; then
-      usage "'mpirun' not found"
-   fi
-   mpiopts="-np $NPROCS"
+    #
+    # locate mpirun
+    #
+    mpirun=`findExec mpirun`
+    if [ $? -ne 0 ]
+    then
+        usage "'mpirun' not found"
+    fi
+    mpiopts="-np $NPROCS"
+
+    # 
+    # is the machine ready to run parallel?
+    #
+    echo "Parallel processing using $WM_MPLIB with $NPROCS processors"
+    case "$WM_MPLIB" in
+    OPENMPI)
+        # add hostfile info
+        for hostfile in \
+            hostfile \
+            machines \
+            system/hostfile \
+            system/machines \
+            ;
+        do
+            if [ -r $hostfile ]
+            then
+                mpiopts="$mpiopts -hostfile $hostfile"
+                break
+            fi
+        done
+        ;;
+    esac
+
+    #
+    # run (in parallel)
+    #
+    if [ "$screenOpt" = true ]
+    then
+        echo "Executing: mpirun $mpiopts $APPLICATION $@ -parallel | tee log"
+        $mpirun $mpiopts $APPLICATION $@ -parallel  | tee log
+    else
+        echo "Executing: mpirun $mpiopts $APPLICATION $@ -parallel > log 2>&1"
+        $mpirun $mpiopts $APPLICATION $@ -parallel > log 2>&1 &
+    fi
 
-#
-#   IS THE MACHINE READY TO RUN PARALLEL?
-#
-   echo "Parallel processing using $WM_MPLIB with $NPROCS processors"
-   case "$WM_MPLIB" in
-   OPENMPI)
-      # add hostfile info
-      for hostfile in \
-         hostfile \
-         machines \
-         system/hostfile \
-         system/machines \
-      ;
-      do
-         if [ -r $hostfile ]; then
-            mpiopts="$mpiopts -hostfile $hostfile"
-            break
-         fi
-      done
-      ;;
-   esac
+else
+    #
+    # run (on single processor)
+    #
+    if [ "$screenOpt" = true ]
+    then
+        echo "Executing: $APPLICATION $@ | tee log &"
+        $APPLICATION $@ | tee log &
+        wait $!
+    else
+        echo "Executing: $APPLICATION $@ > log 2>&1 &"
+        $APPLICATION $@ > log 2>&1 &
+    fi
+else
 
-#
-#   RUN IN PARALLEL
-#
-   if [ "$SCREEN" = no ] ; then
-      echo "Executing: mpirun $mpiopts $APPLICATION $@ -parallel > log 2>&1"
-      $mpirun $mpiopts $APPLICATION $@ -parallel > log 2>&1 &
-   else
-      echo "Executing: mpirun $mpiopts $APPLICATION $@ -parallel | tee log"
-      $mpirun $mpiopts $APPLICATION $@ -parallel  | tee log
-   fi
 fi
 
 #------------------------------------------------------------------------------

bin/mpirunDebug

@@ -40,34 +40,39 @@ else
 fi
 
 
-printUsage() {
-    echo ""
-    echo "Usage: ${0##*/} -np <dd> <executable> <args>"
-    echo ""
-    echo "This will run like mpirun but with each process in an xterm"
+usage()
+{
+    cat<<USAGE
+
+Usage: ${0##*/}  -np <dd> <executable> <args>
+
+* This will run like mpirun but with each process in an XTerm
+
+USAGE
+    exit 1
 }
 
-nProcs=''
-exec=''
-args=''
+unset nProcs exec args
 
-while [ "$1" != "" ]; do
+while [ "$1" != "" ]
+do
     echo "$1"
     case $1 in
-      -np)
+    -np)
         nProcs=$2
         shift
         ;;
-      *)
-        if [ ! "$exec" ]; then
+    *)
+        if [ ! "$exec" ]
+        then
             exec=$1
-        elif [ ! "$args" ]; then
+        elif [ ! "$args" ]
+        then
             args="\"$1\""
         else
             args="$args \"$1\""
         fi
         ;;
-
     esac
     shift
 done
@@ -76,27 +81,19 @@ echo "nProcs=$nProcs"
 echo "exec=$exec"
 echo "args=$args"
 
-if [ ! "$nProcs" ]; then
-    printUsage
-    exit 1
-fi
-if [ ! "$args" ]; then
-    printUsage
-    exit 1
-fi
-if [ ! "$exec" ]; then
-    printUsage
-    exit 1