Merge branch 'master' of /home/hunt2/OpenFOAM/OpenFOAM-dev

applications/test/xfer/xferListTest.C

@@ -33,9 +33,13 @@ Description
 #include "IOstreams.H"
 #include "IStringStream.H"
 #include "labelList.H"
+#include "DynamicList.H"
+#include "face.H"
 
 using namespace Foam;
 
+
+
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 //  Main program:
 
@@ -43,12 +47,12 @@ int main(int argc, char *argv[])
 {
     List<label> lstA(10);
     List<label> lstC(IStringStream("(1 2 3 4)")());
-    
+
     forAll(lstA, i)
     {
         lstA[i] = i;
     }
-        
+
     Info<< "lstA: " << lstA << endl;
     Info<< "lstC: " << lstC << endl;
 
@@ -72,10 +76,10 @@ int main(int argc, char *argv[])
     Info<< "lstC: " << lstC << endl;
 
     xB = xA;
-    
+
     List<label> lstD(xferCopy(lstC));
     List<label> lstE(xferMove(lstC));
-    
+
     // this must be empty
     List<label> lstF = xferCopy(lstC);
 
@@ -88,12 +92,30 @@ int main(int argc, char *argv[])
     Info<< "lstE: " << lstE << endl;
     Info<< "lstF: " << lstF << endl;
 
-    Info<< "xB size: " << xB->size() << endl;
+    Info<< "xB[" << xB->size() << "]\n";
 
     // clear the underlying List
     xB->clear();
 
-    Info<< "xB size: " << xB->size() << endl;
+    Info<< "xB[" << xB->size() << "]\n";
+
+    DynamicList<label> dl(10);
+    for (label i = 0; i < 5; i++)
+    {
+        dl.append(i);
+    }
+
+    face f1(dl);
+    face f2(xferCopy<labelList>(dl));
+
+    Info<< "dl[" << dl.size() << "/" << dl.allocSize() << "] " << dl << endl;
+    Info<< "f1: " << f1 << endl;
+    Info<< "f2: " << f2 << endl;
+
+    // note: using xferMoveTo to ensure the correct transfer() method is called
+    face f3( xferMoveTo<labelList>(dl) );
+    Info<< "dl[" << dl.size() << "/" << dl.allocSize() << "] " << dl << endl;
+    Info<< "f3: " << f3 << endl;
 
     return 0;
 }

applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C

@@ -316,11 +316,10 @@ autoPtr<mapPolyMesh> reorderMesh
 
     mesh.resetPrimitives
     (
-        mesh.nFaces(),
-        mesh.points(),
-        newFaces,
-        newOwner,
-        newNeighbour,
+        xfer<pointField>::null(),
+        xferMove(newFaces),
+        xferMove(newOwner),
+        xferMove(newNeighbour),
         patchSizes,
         patchStarts
     );

applications/utilities/surface/README

-09/01/04
+2008-10-23
+
 Contents:
 
 surfaceAdd
-adds to surface files. (but does not intersect or anything) 
+- adds to surface files. (but does not intersect or anything)
 
 surfaceBooleanOp
-Boolean operations (add, or, xor) on closed surfaces. Probably not working.
+- Boolean operations (add, or, xor) on closed surfaces. Probably not working.
 
 surfaceCheck
-checks surface for incorrect topology. Checks normals of neighbouring faces.
+- checks surface for incorrect topology. Checks normals of neighbouring faces.
 
 surfaceCoarsen
-Stan Melax coarsening algorithm
+- Stan Melax coarsening algorithm
 
 surfaceConvert
-Converts surfaces to/from various formats
+- Converts surfaces to/from various formats
 
 surfaceFind
-Finds nearest vertex and face to given point.
+- Finds nearest vertex and face to given point.
 
 surfaceMeshTriangulate
-Triangulate external facses of mesh and write as surface.
+- Triangulate external facses of mesh and write as surface.
 
 surfacePointMerge
-Explicit point merge of surface.
+- Explicit point merge of surface.
 
 surfaceSetOutside
-Orient normals on (closed) surface.
+- Orient normals on (closed) surface.
 
 surfaceSmooth
-Laplacian smoothing on surface vertices
+- Laplacian smoothing on surface vertices
 
 surfaceSubset
-Subsets surface
+- Subsets surface
 
 surfaceToPatch
-Applies region information of surfaces to mesh. Each external face of mesh
-gets region number of nearest surface triangle.
+- Applies region information of surfaces to mesh.
+  Each external face of mesh gets region number of nearest surface triangle.
+
+-------------------------------------------------------------------------------
+
+surfaceMeshConvert
+- Similar to surfaceConvert, but uses surfMesh library
 

applications/utilities/surface/surfaceMeshConvert/Make/files

+surfaceMeshConvert.C
+
+EXE = $(FOAM_APPBIN)/surfaceMeshConvert

applications/utilities/surface/surfaceMeshConvert/Make/options

+EXE_INC = \
+    -I$(LIB_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/surfMesh/lnInclude
+
+EXE_LIBS = -lsurfMesh

applications/utilities/surface/surfaceMeshConvert/surfaceMeshConvert.C

+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 1991-2008 OpenCFD Ltd.
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Application
+    surfaceMeshConvert
+
+Description
+    Converts from one surface mesh format to another
+
+Usage
+    - surfaceMeshConvert inputFile outputFile [OPTION]
+
+    @param -clean \n
+    Perform some surface checking/cleanup on the input surface
+
+    @param -scale \<scale\> \n
+    Specify a scaling factor for writing the files
+
+    @param -triSurface \n
+    Use triSurface library for input/output
+
+Note
+    The filename extensions are used to determine the file format type.
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "timeSelector.H"
+#include "Time.H"
+#include "polyMesh.H"
+#include "meshedSurface.H"
+#include "triSurface.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+//  Main program:
+
+int main(int argc, char *argv[])
+{
+    argList::noParallel();
+    argList::validArgs.append("inputFile");
+    argList::validArgs.append("outputFile");
+    argList::validOptions.insert("scale", "scale");
+    argList::validOptions.insert("clean", "");
+    argList::validOptions.insert("triSurface", "");
+#   include "setRootCase.H"
+    const stringList& params = args.additionalArgs();
+
+    scalar scaleFactor = 0;
+    if (args.options().found("scale"))
+    {
+        IStringStream(args.options()["scale"])() >> scaleFactor;
+    }
+
+    fileName importName(params[0]);
+    fileName exportName(params[1]);
+
+    if
+    (
+        !meshedSurface::canRead(importName.ext(), true)
+     || !meshedSurface::canWrite(exportName.ext(), true)
+    )
+    {
+        return 1;
+    }
+
+    if (args.options().found("triSurface"))
+    {
+// #       include "createTime.H"
+//         instantList timeDirs = timeSelector::select0(runTime, args);
+// #       include "createPolyMesh.H"
+
+        triSurface surf(importName);
+
+        if (args.options().found("clean"))
+        {
+            surf.cleanup(true);
+            surf.checkOrientation(true);
+        }
+
+        Info << "writing " << exportName;
+        if (scaleFactor <= 0)
+        {
+            Info<< " without scaling" << endl;
+        }
+        else
+        {
+            Info<< " triSurface does not yet support scaling "
+                << scaleFactor << endl;
+            // surf.scalePoints(scaleFactor);
+        }
+        surf.write(exportName);
+    }
+    else
+    {
+        meshedSurface surf(importName);
+
+        if (args.options().found("clean"))
+        {
+            surf.cleanup(true);
+            surf.checkOrientation(true);
+        }
+
+        surf.scalePoints(scaleFactor);
+
+        Info<< "writing " << exportName;
+        if (scaleFactor <= 0)
+        {
+            Info<< " without scaling" << endl;
+        }
+        else
+        {
+            Info<< " with scaling " << scaleFactor << endl;
+        }
+        surf.write(exportName);
+    }
+
+    Info<< "\nEnd\n" << endl;
+
+    return 0;
+}
+
+// ************************************************************************* //

bin/foamNew

@@ -36,7 +36,7 @@ usage() {
 
 usage: ${0##*/} <type> {args}
 
-* create a new standard OpenFOAM source file
+* create a new standard OpenFOAM source or template file
 
 type: (source|template)
 
@@ -46,25 +46,24 @@ USAGE
 
 if [ "$#" -lt 2 ]
 then
-   usage "wrong number of arguments, expected 2 (or more)"
+    usage "wrong number of arguments, expected 2 (or more)"
 fi
 
 case "$1" in
 -h | -help)
-   usage
-   ;;
+    usage
+    ;;
 source)
-   shift
-   $WM_PROJECT_DIR/bin/foamTemplates/source/newSource $*
-   ;;
+    shift
+    $WM_PROJECT_DIR/bin/foamTemplates/source/newSource $*
+    ;;
 template)
-   shift
-   $WM_PROJECT_DIR/bin/foamTemplates/sourceTemplate/newSourceTemplate $*
-   ;;
+    shift
+    $WM_PROJECT_DIR/bin/foamTemplates/sourceTemplate/newSourceTemplate $*
+    ;;
 *)
-   usage "unknown type"
-   ;;
+    usage "unknown type"
+    ;;
 esac
 
-
 #------------------------------------------------------------------------------

bin/foamPack

@@ -38,20 +38,20 @@ packFile=${packDir}_${timeStamp}.gtgz
 
 if [ ! -d $packDir ]
 then
-   echo "Error: directory $packDir does not exist"
-   exit 1
+    echo "Error: directory $packDir does not exist" 1>&2
+    exit 1
 fi
 
 # add optional output directory
 if [ -d "$1" ]
 then
-   packFile="$1/$packFile"
+    packFile="$1/$packFile"
 fi
 
 if [ -f $packFile ]
 then
-   echo "Error: $packFile already exists"
-   exit 1
+    echo "Error: $packFile already exists" 1>&2
+    exit 1
 fi
 
 # Create time stamp file
@@ -102,10 +102,10 @@ tar czpf $packFile --files-from $tmpFile
 
 if [ $? = 0 ]
 then
-   echo "Finished packing and compressing $packDir into file $packFile"
+    echo "Finished packing and compressing $packDir into file $packFile"
 else
-   echo "Error: failure packing $packDir into file $packFile"
-   rm -f $packFile 2>/dev/null
+    echo "Error: failure packing $packDir into file $packFile" 1>&2
+    rm -f $packFile 2>/dev/null
 fi
 
 #------------------------------------------------------------------------------

bin/foamPackDoxygen

@@ -34,6 +34,7 @@ packDir=$WM_PROJECT-$WM_PROJECT_VERSION
 packTag=_Doxygen.gtgz
 
 usage() {
+    while [ $# -gt 0 ]; do echo "$1" 1>&2; shift; done
 cat <<USAGE 1>&2
 Usage: ${0##*/} [-prefix DIR] [-o outputDir]
 
@@ -47,38 +48,38 @@ unset prefix outputDir
 
 while [ "$#" -gt 0 ]
 do
-   case $1 in
-   -prefix | --prefix )
-      prefix=${2%%/}
-      shift 2
-      ;;
-   -o | -output )
-      outputDir=${2%%/}
-      shift 2
-      ;;
-   -h | -help )
-      usage
-      ;;
-   -*)
-      usage "unknown option: '$*'"
-      ;;
-   esac
+    case $1 in
+    -prefix | --prefix )
+        prefix=${2%%/}
+        shift 2
+        ;;
+    -o | -output )
+        outputDir=${2%%/}
+        shift 2
+        ;;
+    -h | -help )
+        usage
+        ;;
+    -*)
+        usage "unknown option: '$*'"
+        ;;
+    esac
 done
 
 # if packing from within the directory, use -prefix form
 if [ "${PWD##*/}" = "$packDir" ]
 then
-   : ${prefix:=$packDir}
+    : ${prefix:=$packDir}
 fi
 
 # pack the directories directly and add prefix afterwards
 if [ -n "$prefix" ]
 then
-   packDir="$prefix"
+    packDir="$prefix"
 elif [ ! -d $packDir ]
 then
-   echo "Error: directory $packDir does not exist"
-   exit 1
+    echo "Error: directory $packDir does not exist" 1>&2
+    exit 1
 fi
 
 #

bin/foamUpdateCaseFileHeader

@@ -36,26 +36,25 @@
 foamVersion=$WM_PROJECT_VERSION
 
 usage() {
-   cat<<USAGE
+    cat<<USAGE
 
 usage: ${0##*/} [OPTION] <file1> ... <fileN>
 
 options:
-  -v "<version>"  specifies the version to be written in the header
-  -h              help
+  -v VER  specifies the version to be written in the header
+  -h      help
 
-  Updates the header of application files.
+  Updates the header of application files and removes consecutive blank lines.
   By default, writes current version in the header.
-  Alternatively version can be specified with -v option.
-  Also removes consecutive blank lines from file.
+  An alternative version can be specified with -v option.
 
 USAGE
-   exit 1
+    exit 1
 }
 
 
 printHeader() {
-   cat<<HEADER
+    cat<<HEADER
 /*--------------------------------*- C++ -*----------------------------------*\\
 | =========                 |                                                 |
 | \\\\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
@@ -78,7 +77,7 @@ HEADER
 # extract attribute '$1' from file '$2'
 #
 FoamFileAttribute() {
-   sed -n -e 's/[ ;]*$//' -e "s/^ *$1 *//p" $2
+    sed -n -e 's/[ ;]*$//' -e "s/^ *$1 *//p" $2
 }
 
 
@@ -88,22 +87,22 @@ FoamFileAttribute() {
 OPTS=`getopt hv: $*`
 if [ $? -ne 0 ]
 then
-   echo "Aborting due to invalid option"
-   usage
+    echo "Aborting due to invalid option"
+    usage
 fi
 eval set -- '$OPTS'
 while [ "$1" != "--" ]
 do
-   case $1 in
-   -v)
-      foamVersion=$2
-      shift
-      ;;
-   -h)
-      usage
-      ;;
-   esac
-   shift
+    case $1 in
+    -v)
+        foamVersion=$2
+        shift
+        ;;
+    -h)
+        usage
+        ;;
+    esac
+    shift
 done
 shift
 
@@ -118,24 +117,24 @@ foamVersion=`printf %-36s $foamVersion`
 #
 for caseFile
 do
-   if grep FoamFile $caseFile >/dev/null 2>&1
-   then
-      echo "Updating case file: $caseFile"
-      sed -n '/FoamFile/,/}/p' $caseFile > FoamFile.tmp
-
-      CLASS=`FoamFileAttribute class FoamFile.tmp`
-      OBJECT=`FoamFileAttribute object FoamFile.tmp`
-      FORMAT=`FoamFileAttribute format FoamFile.tmp`
-
-      printHeader $FORMAT $CLASS $OBJECT $NOTE > FoamFile.tmp
-      sed '1,/}/d' $caseFile | sed '/./,/^$/!d' >> FoamFile.tmp
-
-      # use cat to avoid removing/replace soft-links
-      [ -s FoamFile.tmp ] && cat FoamFile.tmp >| $caseFile
-      rm FoamFile.tmp
-   else
-      echo " Invalid case file: $caseFile"
-   fi
+    if grep FoamFile $caseFile >/dev/null 2>&1
+    then
+        echo "Updating case file: $caseFile"
+        sed -n '/FoamFile/,/}/p' $caseFile > FoamFile.tmp
+
+        CLASS=`FoamFileAttribute class FoamFile.tmp`
+        OBJECT=`FoamFileAttribute object FoamFile.tmp`
+        FORMAT=`FoamFileAttribute format FoamFile.tmp`
+
+        printHeader $FORMAT $CLASS $OBJECT $NOTE > FoamFile.tmp
+        sed '1,/}/d' $caseFile | sed '/./,/^$/!d' >> FoamFile.tmp
+
+        # use cat to avoid removing/replace soft-links
+        [ -s FoamFile.tmp ] && cat FoamFile.tmp >| $caseFile
+        rm FoamFile.tmp
+    else
+        echo " Invalid case file: $caseFile" 1>&2
+    fi
 done
 
 #------------------------------------------------------------------------------

bin/foamUpgradeTurbulenceProperties

@@ -37,7 +37,7 @@
 #------------------------------------------------------------------------------
 
 usage() {
-   cat<<USAGE
+    cat<<USAGE
 
 usage: ${0##*/} <turbulenceProperties>
 
@@ -57,42 +57,42 @@ USAGE
 #
 convertDict()
 {
-   echo "Identified $1 turbulence model in '$3'"
-   outputPath=`dirname $3`
+    echo "Identified $1 turbulence model in '$3'"
+    outputPath=`dirname $3`
 
-   if [ -e "$outputPath/$1Properties" ]
-   then
-      echo "Error: file already exists $outputPath/$1Properties'"
-   else
-      sed -e "s/turbulenceProperties/$1Properties/" \
-          -e "s/$2/$1Model/" \
-          -e "s/[a-zA-Z0-9]* [ ]*\[[0-9 ]*\]//" \
-          $3 > "$outputPath/$1Properties"
+    if [ -e "$outputPath/$1Properties" ]
+    then
+        echo "Error: file already exists $outputPath/$1Properties'" 1>&2
+    else
+        sed -e "s/turbulenceProperties/$1Properties/" \
+            -e "s/$2/$1Model/" \
+            -e "s/[a-zA-Z0-9]* [ ]*\[[0-9 ]*\]//" \
+            $3 > "$outputPath/$1Properties"
 
-      echo "    wrote $outputPath/$1Properties"
-   fi
+        echo "    wrote $outputPath/$1Properties"
+    fi
 }
 
 [ $# -ge 1 ] || usage
 
 for turbDict
 do