ENH: csv reading for interpolationTable and writing for sampledSet

src/OpenFOAM/Make/files

@@ -571,6 +571,10 @@ interpolations = interpolations
 interpolation = $(interpolations)/interpolation
 $(interpolations)/patchToPatchInterpolation/PatchToPatchInterpolationName.C
 
+$(interpolations)/interpolationTable/tableReaders/tableReaders.C
+$(interpolations)/interpolationTable/tableReaders/openFoam/openFoamTableReaders.C
+$(interpolations)/interpolationTable/tableReaders/csv/csvTableReaders.C
+
 algorithms/MeshWave/MeshWaveName.C
 algorithms/MeshWave/FaceCellWaveName.C
 

src/OpenFOAM/interpolations/interpolationTable/interpolationTable.C

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 2004-2010 OpenCFD Ltd.
+    \\  /    A nd           | Copyright (C) 2004-2011 OpenCFD Ltd.
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -25,6 +25,7 @@ License
 
 #include "interpolationTable.H"
 #include "IFstream.H"
+#include "openFoamTableReader.H"
 
 // * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * * //
 
@@ -38,19 +39,19 @@ void Foam::interpolationTable<Type>::readTable()
     fName.expand();
 
     // Read data from file
-    IFstream(fName)() >> *this;
-
-    // Check that the data are okay
-    check();
+    reader_()(fName, *this);
 
     if (this->empty())
     {
         FatalErrorIn
         (
             "Foam::interpolationTable<Type>::readTable()"
-        )   << "table is empty" << nl
+        )   << "table read from " << fName << " is empty" << nl
             << exit(FatalError);
     }
+
+    // Check that the data are okay
+    check();
 }
 
 
@@ -61,7 +62,8 @@ Foam::interpolationTable<Type>::interpolationTable()
 :
     List<Tuple2<scalar, Type> >(),
     boundsHandling_(interpolationTable::WARN),
-    fileName_("fileNameIsUndefined")
+    fileName_("fileNameIsUndefined"),
+    reader_(NULL)
 {}
 
 
@@ -75,7 +77,8 @@ Foam::interpolationTable<Type>::interpolationTable
 :
     List<Tuple2<scalar, Type> >(values),
     boundsHandling_(bounds),
-    fileName_(fName)
+    fileName_(fName),
+    reader_(NULL)
 {}
 
 
@@ -84,7 +87,8 @@ Foam::interpolationTable<Type>::interpolationTable(const fileName& fName)
 :
     List<Tuple2<scalar, Type> >(),
     boundsHandling_(interpolationTable::WARN),
-    fileName_(fName)
+    fileName_(fName),
+    reader_(new openFoamTableReader<Type>())
 {
     readTable();
 }
@@ -95,7 +99,8 @@ Foam::interpolationTable<Type>::interpolationTable(const dictionary& dict)
 :
     List<Tuple2<scalar, Type> >(),
     boundsHandling_(wordToBoundsHandling(dict.lookup("outOfBounds"))),
-    fileName_(dict.lookup("fileName"))
+    fileName_(dict.lookup("fileName")),
+    reader_(tableReader<Type>::New(dict))
 {
     readTable();
 }
@@ -109,7 +114,8 @@ Foam::interpolationTable<Type>::interpolationTable
 :
     List<Tuple2<scalar, Type> >(interpTable),
     boundsHandling_(interpTable.boundsHandling_),
-    fileName_(interpTable.fileName_)
+    fileName_(interpTable.fileName_),
+    reader_(interpTable.reader_)    // note: steals reader. Used in write().
 {}
 
 
@@ -233,6 +239,10 @@ void Foam::interpolationTable<Type>::write(Ostream& os) const
         << fileName_ << token::END_STATEMENT << nl;
     os.writeKeyword("outOfBounds")
         << boundsHandlingToWord(boundsHandling_) << token::END_STATEMENT << nl;
+    if (reader_.valid())
+    {
+        reader_->write(os);
+    }
 }
 
 

src/OpenFOAM/interpolations/interpolationTable/interpolationTable.H

@@ -34,6 +34,19 @@ Description
     If \a REPEAT is chosen for the out-of-bounds handling, the final time
     value is treated as being equivalent to time=0 for the following periods.
 
+
+    The construct from dictionary reads a filename from a dictionary and
+    has an optional readerType. Default is to read OpenFOAM format. The only
+    other format is csv (comma separated values):
+
+    Read csv format:
+        readerType      csv;
+        fileName        "$FOAM_CASE/constant/p0vsTime.csv";
+        hasHeaderLine   true;   // skip first line
+        timeColumn      0;      // time is in column 0
+        valueColumns    (1);    // value starts in column 1
+
+
 Note
     - Accessing an empty list results in an error.
     - Accessing a list with a single element always returns the same value.
@@ -49,6 +62,9 @@ SourceFiles
 #include "List.H"
 #include "Tuple2.H"
 
+#include "tableReader.H"
+#include "autoPtr.H"
+
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 namespace Foam
@@ -87,6 +103,8 @@ private:
         //- File name
         fileName fileName_;
 
+        //- the actual reader
+        autoPtr<tableReader<Type> > reader_;
 
     // Private Member Functions
 

src/OpenFOAM/interpolations/interpolationTable/tableReaders/csv/csvTableReader.C

+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2004-2011 OpenCFD Ltd.
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "csvTableReader.H"
+#include "IFstream.H"
+#include "DynamicList.H"
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+template<class Type>
+Foam::csvTableReader<Type>::csvTableReader(const dictionary& dict)
+:
+    tableReader<Type>(dict),
+    headerLine_(readBool(dict.lookup("hasHeaderLine"))),
+    timeColumn_(readLabel(dict.lookup("timeColumn"))),
+    componentColumns_(dict.lookup("valueColumns")),
+    separator_(dict.lookupOrDefault<string>("separator", string(","))[0])
+{
+    if (componentColumns_.size() != pTraits<Type>::nComponents)
+    {
+        FatalErrorIn("csvTableReader<Type>::csvTableReader(const dictionary&)")
+            << componentColumns_ << " does not have the expected length "
+            << pTraits<Type>::nComponents << endl
+            << exit(FatalError);
+    }
+}
+
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+template<class Type>
+Foam::csvTableReader<Type>::~csvTableReader()
+{}
+
+
+// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
+
+namespace Foam
+{
+    // doesn't recognize specialization otherwise
+    template<>
+    scalar csvTableReader<scalar>::readValue(const List<string>& splitted)
+    {
+        if (componentColumns_[0] >= splitted.size())
+        {
+            FatalErrorIn
+            (
+                "csvTableReader<scalar>::readValue(const List<string>&)"
+            )   << "No column " << componentColumns_[0] << " in "
+                << splitted << endl
+                << exit(FatalError);
+        }
+
+        return readScalar(IStringStream(splitted[componentColumns_[0]])());
+    }
+
+
+    template<class Type>
+    Type csvTableReader<Type>::readValue(const List<string>& splitted)
+    {
+        Type result;
+
+        for(label i = 0;i < pTraits<Type>::nComponents; i++)
+        {
+            if (componentColumns_[i] >= splitted.size())
+            {
+                FatalErrorIn
+                (
+                    "csvTableReader<Type>::readValue(const List<string>&)"
+                )   << "No column " << componentColumns_[i] << " in "
+                    << splitted << endl
+                    << exit(FatalError);
+            }
+
+            result[i] = readScalar
+            (
+                IStringStream(splitted[componentColumns_[i]])()
+            );
+        }
+
+        return result;
+    }
+}
+
+
+template<class Type>
+void Foam::csvTableReader<Type>::operator()
+(
+    const fileName& fName,
+    List<Tuple2<scalar, Type> >& data
+)
+{
+    IFstream in(fName);
+
+    DynamicList<Tuple2<scalar, Type> > values;
+
+    // Skip header
+    if (headerLine_)
+    {
+        string line;
+        in.getLine(line);
+    }
+
+    while (in.good())
+    {
+        string line;
+        in.getLine(line);
+
+        DynamicList<string> splitted;
+
+        std::size_t pos = 0;
+        while (pos != std::string::npos)
+        {
+            std::size_t nPos = line.find(separator_, pos);
+
+            if (nPos == std::string::npos)
+            {
+                splitted.append(line.substr(pos));
+                pos=nPos;
+            }
+            else
+            {
+                splitted.append(line.substr(pos, nPos-pos));
+                pos=nPos+1;
+            }
+        }
+
+        if (splitted.size() <= 1)
+        {
+            break;
+        }
+
+        scalar time = readScalar(IStringStream(splitted[timeColumn_])());
+        Type value = readValue(splitted);
+
+        values.append(Tuple2<scalar,Type>(time, value));
+    }
+
+    data.transfer(values);
+}
+
+
+template<class Type>
+void Foam::csvTableReader<Type>::write(Ostream& os) const
+{
+    tableReader<Type>::write(os);
+
+    os.writeKeyword("hasHeaderLine")
+        << headerLine_ << token::END_STATEMENT << nl;
+    os.writeKeyword("timeColumn")
+        << timeColumn_ << token::END_STATEMENT << nl;
+    os.writeKeyword("valueColumns")
+        << componentColumns_ << token::END_STATEMENT << nl;
+    os.writeKeyword("separator")
+        << string(separator_) << token::END_STATEMENT << nl;
+}
+
+
+// ************************************************************************* //

src/OpenFOAM/interpolations/interpolationTable/tableReaders/csv/csvTableReader.H

+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2004-2011 OpenCFD Ltd.
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    Foam::tableReader
+
+Description
+    Reads an interpolation table from a file - CSV-format
+
+SourceFiles
+    tableReader.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef csvTableReader_H
+#define csvTableReader_H
+
+#include "tableReader.H"
+#include "labelList.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                           Class csvTableReader Declaration
+\*---------------------------------------------------------------------------*/
+
+template<class Type>
+class csvTableReader
+:
+    public tableReader<Type>
+{
+    //- does the file have a header line?
+    const bool headerLine_;
+
+    //- column of the time
+    const label timeColumn_;
+
+    //- labels of the components
+    const labelList componentColumns_;
+
+    //- read the next value from the splitted string
+    Type readValue(const List<string>&);
+
+    //- separator character
+    const char separator_;
+
+public:
+
+    //- Runtime type information
+    TypeName("csv");
+
+    // Constructors
+
+        //- Construct from dictionary
+        csvTableReader(const dictionary& dict);
+
+        //- Construct and return a copy
+        virtual autoPtr<tableReader<Type> > clone() const
+        {
+            return autoPtr<tableReader<Type> >
+            (
+                new csvTableReader<Type>
+                (
+                    *this
+                )
+            );
+        }
+
+
+    //- Destructor
+
+        virtual ~csvTableReader();
+
+
+    // Member Functions
+
+        //- Read the table
+        virtual void operator()(const fileName&, List<Tuple2<scalar, Type> >&);
+
+        //- write the remaining parameters
+        virtual void write(Ostream& os) const;
+
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "csvTableReader.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/OpenFOAM/interpolations/interpolationTable/tableReaders/csv/csvTableReaders.C

+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2004-2011 OpenCFD Ltd.
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "csvTableReader.H"
+#include "tableReaders.H"
+#include "addToRunTimeSelectionTable.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+    makeTableReaders(csvTableReader);
+}
+
+// ************************************************************************* //

src/OpenFOAM/interpolations/interpolationTable/tableReaders/openFoam/openFoamTableReader.C

+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2004-2011 OpenCFD Ltd.
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "openFoamTableReader.H"
+#include "IFstream.H"
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+template<class Type>
+Foam::openFoamTableReader<Type>::openFoamTableReader(const dictionary& dict)
+:
+    tableReader<Type>(dict)
+{}
+
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+template<class Type>
+Foam::openFoamTableReader<Type>::~openFoamTableReader()
+{}
+
+
+// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
+
+template<class Type>
+void Foam::openFoamTableReader<Type>::operator()
+(
+    const fileName& fName,
+    List<Tuple2<scalar, Type> >& data
+)
+{
+    // Read data from file
+    IFstream(fName)() >> data;
+}
+
+
+// ************************************************************************* //

src/OpenFOAM/interpolations/interpolationTable/tableReaders/openFoam/openFoamTableReader.H

+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2004-2011 OpenCFD Ltd.
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    Foam::tableReader
+
+Description
+    Reads an interpolation table from a file - OpenFOAM-format
+
+SourceFiles
+    tableReader.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef openFoamTableReader_H
+#define openFoamTableReader_H
+
+#include "tableReader.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+