Thermodynamics: Updated combustion solvers to use EEqn and support h/e or ha/ea

tutorials/combustion/PDRFoam/flamePropagationWithObstacles/Allrun

@@ -5,11 +5,13 @@ cd ${0%/*} || exit 1    # run from this directory
 # Source tutorial run functions
 . $WM_PROJECT_DIR/bin/tools/RunFunctions
 
+rm -rf 0
+cp -r 0.org 0
 runApplication blockMesh
 runApplication changeDictionary
 runApplication topoSet
 
-runApplication PDRMesh
+runApplication PDRMesh -overwrite
 
 # Run
 runApplication `getApplication`

tutorials/combustion/PDRFoam/flamePropagationWithObstacles/constant/polyMesh/boundary

@@ -44,6 +44,7 @@ FoamFile
     baffleCyclic_half0
     {
         type            cyclic;
+        inGroups        1(cyclic);
         nFaces          0;
         startFace       24810;
         matchTolerance  0.0001;
@@ -52,6 +53,7 @@ FoamFile
     baffleCyclic_half1
     {
         type            cyclic;
+        inGroups        1(cyclic);
         nFaces          0;
         startFace       24810;
         matchTolerance  0.0001;

tutorials/combustion/fireFoam/les/smallPoolFire2D/constant/polyMesh/boundary

@@ -38,6 +38,7 @@ FoamFile
     frontAndBack
     {
         type            empty;
+        inGroups        1(empty);
         nFaces          45000;
         startFace       45284;
     }