Removing two older solvers.

applications/solvers/molecularDynamics/gnemdFoam/Make/files

-gnemdFoam.C
-
-EXE = $(FOAM_APPBIN)/gnemdFoam

applications/solvers/molecularDynamics/gnemdFoam/Make/options

-EXE_INC = \
-    -I$(LIB_SRC)/lagrangian/molecularDynamics/molecule/lnInclude \
-    -I$(LIB_SRC)/lagrangian/molecularDynamics/potential/lnInclude \
-    -I$(LIB_SRC)/finiteVolume/lnInclude \
-    -I$(LIB_SRC)/lagrangian/basic/lnInclude \
-    -I$(LIB_SRC)/meshTools/lnInclude
-
-EXE_LIBS = \
-    -lmeshTools \
-    -lfiniteVolume \
-    -llagrangian \
-    -lmolecule \
-    -lpotential

applications/solvers/molecularDynamics/gnemdFoam/gnemdFoam.C

-/*---------------------------------------------------------------------------*\
- =========                   |
- \\      /   F ield          | OpenFOAM: The Open Source CFD Toolbox
-  \\    /    O peration      |
-   \\  /     A nd            | Copyright (C) 1991-2008 OpenCFD Ltd.
-    \\/      M anipulation   |
--------------------------------------------------------------------------------
-License
-    This file is part of OpenFOAM.
-
-    OpenFOAM is free software; you can redistribute it and/or modify it
-    under the terms of the GNU General Public License as published by the
-    Free Software Foundation; either version 2 of the License, or (at your
-    option) any later version.
-
-    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-    for more details.
-
-    You should have received a copy of the GNU General Public License
-    along with OpenFOAM; if not, write to the Free Software Foundation,
-    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-
-Application
-    gnemdFOAM
-
-Description
-    MD for Fluid Mechanics and hybridising with a continuum solver.
-
-\*---------------------------------------------------------------------------*/
-
-#include "fvCFD.H"
-#include "md.H"
-
-int main(int argc, char *argv[])
-{
-
-#   include "setRootCase.H"
-#   include "createTime.H"
-#   include "createMesh.H"
-
-    moleculeCloud molecules(mesh);
-
-#   include "createMDFields.H"
-
-    molecules.removeHighEnergyOverlaps();
-
-#   include "temperatureAndPressureVariables.H"
-
-    label nAveragingSteps = 0;
-
-    Info << "\nStarting time loop\n" << endl;
-
-    while (runTime.run())
-    {
-        runTime++;
-
-        nAveragingSteps++;
-
-        Info << "Time = " << runTime.timeName() << endl;
-
-        molecules.integrateEquationsOfMotion();
-
-#       include "meanMomentumEnergyAndNMols.H"
-
-#       include "temperatureAndPressure.H"
-
-#       include "calculateMDFields.H"
-
-#       include "averageMDFields.H"
-
-        runTime.write();
-
-#       include "resetMDFields.H"
-
-        if (runTime.outputTime())
-        {
-            nAveragingSteps = 0;
-        }
-
-        Info << "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
-            << "  ClockTime = " << runTime.elapsedClockTime() << " s"
-            << nl << endl;
-    }
-
-    Info << "End\n" << endl;
-
-    return(0);
-}

applications/solvers/molecularDynamics/mdTransportProperitesFoam/Make/files

-mdTransportProperitesFoam.C
-
-EXE = $(FOAM_APPBIN)/mdTransportProperitesFoam

applications/solvers/molecularDynamics/mdTransportProperitesFoam/Make/options

-EXE_INC = \
-    -I$(LIB_SRC)/lagrangian/molecularDynamics/molecule/lnInclude \
-    -I$(LIB_SRC)/lagrangian/molecularDynamics/potential/lnInclude \
-    -I$(LIB_SRC)/finiteVolume/lnInclude \
-    -I$(LIB_SRC)/lagrangian/basic/lnInclude \
-    -I$(LIB_SRC)/meshTools/lnInclude
-
-EXE_LIBS = \
-    -lmeshTools \
-    -lfiniteVolume \
-    -llagrangian \
-    -lmolecule \
-    -lpotential

applications/solvers/molecularDynamics/mdTransportProperitesFoam/mdTransportProperitesFoam.C

-/*---------------------------------------------------------------------------*\
- =========                   |
- \\      /   F ield          | OpenFOAM: The Open Source CFD Toolbox
-  \\    /    O peration      |
-   \\  /     A nd            | Copyright (C) 1991-2005 OpenCFD Ltd.
-    \\/      M anipulation   |
--------------------------------------------------------------------------------
-License
-    This file is part of OpenFOAM.
-
-    OpenFOAM is free software; you can redistribute it and/or modify it
-    under the terms of the GNU General Public License as published by the
-    Free Software Foundation; either version 2 of the License, or (at your
-    option) any later version.
-
-    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-    for more details.
-
-    You should have received a copy of the GNU General Public License
-    along with OpenFOAM; if not, write to the Free Software Foundation,
-    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-
-Application
-    mdTransportProperitesFoam
-
-Description
-    MD simulation to calculate continuum transport properites of a homogeneous
-    fluid at a given, stationary state.  Density and temperature defined
-    by preprocessing, pressure measured.
-
-\*---------------------------------------------------------------------------*/
-
-#include "argList.H"
-#include "fvCFD.H"
-#include "md.H"
-
-int main(int argc, char *argv[])
-{
-    argList::noParallel();
-
-#   include "setRootCase.H"
-#   include "createTime.H"
-#   include "createMesh.H"
-
-    moleculeCloud molecules(mesh);
-
-    molecules.removeHighEnergyOverlaps();
-
-#   include "temperatureAndPressureVariables.H"
-
-#   include "createAutoCorrelationFunctions.H"
-
-    label nAveragingSteps = 0;
-
-    Info << "\nStarting time loop\n" << endl;
-
-    while (runTime.run())
-    {
-        runTime++;
-
-        nAveragingSteps++;
-
-        Info << "Time = " << runTime.timeName() << endl;
-
-        molecules.integrateEquationsOfMotion();
-
-#       include "meanMomentumEnergyAndNMols.H"
-
-#       include "temperatureAndPressure.H"
-
-#       include "calculateAutoCorrelationFunctions.H"
-
-        runTime.write();
-
-        if (runTime.outputTime())
-        {
-            nAveragingSteps = 0;
-        }
-
-        Info << "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
-            << "  ClockTime = " << runTime.elapsedClockTime() << " s"
-            << nl << endl;
-    }
-
-#   include "calculateTransportProperties.H"
-
-    Info << "End\n" << endl;
-
-    return(0);
-}