Updated member type comments

See http://bugs.openfoam.org/view.php?id=2356

src/functionObjects/field/fieldAverage/fieldAverage.C

@@ -40,7 +40,7 @@ namespace functionObjects
 }
 
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 void Foam::functionObjects::fieldAverage::resetFields()
 {

src/functionObjects/field/fieldAverage/fieldAverage.H

@@ -185,7 +185,7 @@ protected:
             label periodIndex_;
 
 
-    // Private Member Functions
+    // Protected Member Functions
 
         // Initialisation routines
 

src/functionObjects/field/fieldMinMax/fieldMinMax.C

@@ -52,7 +52,7 @@ const Foam::NamedEnum
 > Foam::functionObjects::fieldMinMax::modeTypeNames_;
 
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 void Foam::functionObjects::fieldMinMax::writeFileHeader(const label i)
 {

src/functionObjects/field/fieldMinMax/fieldMinMax.H

@@ -123,7 +123,7 @@ protected:
         wordList fieldSet_;
 
 
-    // Private Member Functions
+    // Protected Member Functions
 
         //- Helper function to write the output
         template<class Type>

src/functionObjects/field/fieldValues/surfaceFieldValue/surfaceFieldValue.C

@@ -98,7 +98,7 @@ const Foam::NamedEnum
 > Foam::functionObjects::fieldValues::surfaceFieldValue::operationTypeNames_;
 
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 void Foam::functionObjects::fieldValues::surfaceFieldValue::setFaceZoneFaces()
 {

src/functionObjects/field/nearWallFields/nearWallFields.C

@@ -42,7 +42,7 @@ namespace functionObjects
 }
 
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 void Foam::functionObjects::nearWallFields::calcAddressing()
 {

src/functionObjects/field/wallBoundedStreamLine/wallBoundedParticle.C

@@ -33,7 +33,7 @@ const std::size_t Foam::wallBoundedParticle::sizeofFields_
 );
 
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 Foam::edge Foam::wallBoundedParticle::currentEdge() const
 {

src/functionObjects/utilities/codedFunctionObject/codedFunctionObject.C

@@ -47,7 +47,7 @@ namespace Foam
     );
 }
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 void Foam::codedFunctionObject::prepare
 (

src/mesh/blockMesh/searchableCurve/searchableCurve.H

@@ -37,9 +37,6 @@ SourceFiles
 
 #include "treeBoundBox.H"
 #include "searchableSurface.H"
-//#include "edgeMesh.H"
-//#include "indexedOctree.H"
-//#include "treeDataEdge.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -59,8 +56,6 @@ class searchableCurve
 :
     public searchableSurface
 {
-private:
-
     // Private Member Data
 
         //- Feature
@@ -222,15 +217,11 @@ public:
                 NotImplemented;
             }
 
-
-        // regIOobject implementation
-
             bool writeData(Ostream&) const
             {
                 NotImplemented;
                 return false;
             }
-
 };
 
 

src/meshTools/AMIInterpolation/AMIInterpolation/AMIMethod/AMIMethod/AMIMethod.C

@@ -28,7 +28,7 @@ License
 #include "mapDistribute.H"
 #include "unitConversion.H"
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 template<class SourcePatch, class TargetPatch>
 void Foam::AMIMethod<SourcePatch, TargetPatch>::checkPatches() const

src/meshTools/AMIInterpolation/patches/cyclicAMI/cyclicAMIPolyPatch/cyclicAMIPolyPatch.C

@@ -67,44 +67,6 @@ Foam::vector Foam::cyclicAMIPolyPatch::findFaceNormalMaxRadius
 }
 
 
-// * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * * //
-
-void Foam::cyclicAMIPolyPatch::calcTransforms()
-{
-    const cyclicAMIPolyPatch& half0 = *this;
-    vectorField half0Areas(half0.size());
-    forAll(half0, facei)
-    {
-        half0Areas[facei] = half0[facei].normal(half0.points());
-    }
-
-    const cyclicAMIPolyPatch& half1 = neighbPatch();
-    vectorField half1Areas(half1.size());
-    forAll(half1, facei)
-    {
-        half1Areas[facei] = half1[facei].normal(half1.points());
-    }
-
-    calcTransforms
-    (
-        half0,
-        half0.faceCentres(),
-        half0Areas,
-        half1.faceCentres(),
-        half1Areas
-    );
-
-    if (debug)
-    {
-        Pout<< "calcTransforms() : patch: " << name() << nl
-            << "    forwardT = " << forwardT() << nl
-            << "    reverseT = " << reverseT() << nl
-            << "    separation = " << separation() << nl
-            << "    collocated = " << collocated() << nl << endl;
-    }
-}
-
-
 void Foam::cyclicAMIPolyPatch::calcTransforms
 (
     const primitivePatch& half0,
@@ -319,7 +281,7 @@ void Foam::cyclicAMIPolyPatch::calcTransforms
 }
 
 
-// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * * //
 
 void Foam::cyclicAMIPolyPatch::resetAMI
 (
@@ -395,6 +357,42 @@ void Foam::cyclicAMIPolyPatch::resetAMI
 }
 
 
+void Foam::cyclicAMIPolyPatch::calcTransforms()
+{
+    const cyclicAMIPolyPatch& half0 = *this;
+    vectorField half0Areas(half0.size());
+    forAll(half0, facei)
+    {
+        half0Areas[facei] = half0[facei].normal(half0.points());
+    }
+
+    const cyclicAMIPolyPatch& half1 = neighbPatch();
+    vectorField half1Areas(half1.size());
+    forAll(half1, facei)
+    {
+        half1Areas[facei] = half1[facei].normal(half1.points());
+    }
+
+    calcTransforms
+    (
+        half0,
+        half0.faceCentres(),
+        half0Areas,
+        half1.faceCentres(),
+        half1Areas
+    );
+
+    if (debug)
+    {
+        Pout<< "calcTransforms() : patch: " << name() << nl
+            << "    forwardT = " << forwardT() << nl
+            << "    reverseT = " << reverseT() << nl
+            << "    separation = " << separation() << nl
+            << "    collocated = " << collocated() << nl << endl;
+    }
+}
+
+
 void Foam::cyclicAMIPolyPatch::initGeometry(PstreamBuffers& pBufs)
 {
     // Clear the invalid AMI

src/meshTools/AMIInterpolation/patches/cyclicAMI/cyclicAMIPolyPatch/cyclicAMIPolyPatch.H

@@ -53,9 +53,6 @@ class cyclicAMIPolyPatch
 :
     public coupledPolyPatch
 {
-
-private:
-
     // Private Member Functions
 
         //- Return normal of face at max distance from rotation axis

src/meshTools/algorithms/MeshWave/FaceCellWave.C

@@ -104,7 +104,7 @@ namespace Foam
 }
 
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 template<class Type, class TrackingData>
 bool Foam::FaceCellWave<Type, TrackingData>::updateCell

src/meshTools/algorithms/MeshWave/FaceCellWave.H

@@ -77,8 +77,6 @@ class FaceCellWave
 :
     public FaceCellWaveName
 {
-private:
-
     // Private Member Functions
 
         //- Disallow default bitwise copy construct
@@ -90,7 +88,7 @@ private:
 
 protected:
 
-    // Private data
+    // Protected data
 
         //- Reference to mesh
         const polyMesh& mesh_;
@@ -244,7 +242,7 @@ protected:
             void handleExplicitConnections();
 
 
-      // Private static data
+      // Protected static data
 
             static const scalar geomTol_;
             static scalar propagationTol_;

src/meshTools/mappedPatches/mappedPolyPatch/mappedPatchBase.H

@@ -133,7 +133,7 @@ public:
 
 
     //- Helper class for finding nearest
-    // Nearest:
+    //  Nearest:
     //  - point+local index
     //  - sqr(distance)
     //  - processor

src/meshTools/sets/topoSetSource/topoSetSource.C

@@ -134,7 +134,7 @@ Foam::Istream& Foam::topoSetSource::checkIs(Istream& is)
 }
 
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 void Foam::topoSetSource::addOrDelete
 (

src/meshTools/sets/topoSets/topoSet.C

@@ -130,7 +130,7 @@ Foam::fileName Foam::topoSet::localPath
 }
 
 
-// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
 // Update stored cell numbers using map.
 // Do in two passes to prevent allocation if nothing changed.

src/meshTools/triSurface/triSurfaceTools/triSurfaceTools.H

@@ -159,7 +159,7 @@ class triSurfaceTools
             );
 
             //- Calculate minimum (cos of) edge angle using addressing from
-            /// collapsing
+            //  collapsing
             //  edge to v1 at pt. Returns 1 if v1 is on edge without neighbours
             //  (and hence no edge angle can be defined)
             static scalar collapseMinCosAngle

src/rigidBodyDynamics/rigidBodyModel/rigidBodyModel.C

@@ -114,6 +114,53 @@ void Foam::RBD::rigidBodyModel::addRestraints
 }
 
 
+// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
+
+Foam::label Foam::RBD::rigidBodyModel::join_
+(
+    const label parentID,
+    const spatialTransform& XT,
+    autoPtr<joint> jointPtr,
+    autoPtr<rigidBody> bodyPtr
+)
+{
+    // Append the body
+    const rigidBody& body = bodyPtr();
+    bodies_.append(bodyPtr);
+    const label bodyID = nBodies()-1;
+    bodyIDs_.insert(body.name(), bodyID);
+
+    // If the parentID refers to a merged body find the parent into which it has
+    // been merged and set lambda and XT accordingly
+    if (merged(parentID))
+    {
+        const subBody& sBody = mergedBody(parentID);
+        lambda_.append(sBody.masterID());
+        XT_.append(XT & sBody.masterXT());
+    }
+    else
+    {
+        lambda_.append(parentID);
+        XT_.append(XT);
+    }
+
+    // Append the joint
+    const joint& prevJoint = joints_[joints_.size() - 1];
+    joints_.append(jointPtr);
+    joint& curJoint = joints_[joints_.size() - 1];
+    curJoint.index() = joints_.size() - 1;
+    curJoint.qIndex() = prevJoint.qIndex() + prevJoint.nDoF();
+
+    // Increment the degrees of freedom
+    nDoF_ += curJoint.nDoF();
+    unitQuaternions_ = unitQuaternions_ || curJoint.unitQuaternion();
+
+    resizeState();
+
+    return bodyID;
+}
+
+
 // * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * * //
 
 Foam::RBD::rigidBodyModel::rigidBodyModel()
@@ -168,52 +215,7 @@ Foam::RBD::rigidBodyModel::~rigidBodyModel()
 {}
 
 
-// * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * * //
-
-Foam::label Foam::RBD::rigidBodyModel::join_
-(
-    const label parentID,
-    const spatialTransform& XT,
-    autoPtr<joint> jointPtr,
-    autoPtr<rigidBody> bodyPtr
-)
-{
-    // Append the body
-    const rigidBody& body = bodyPtr();
-    bodies_.append(bodyPtr);
-    const label bodyID = nBodies()-1;
-    bodyIDs_.insert(body.name(), bodyID);
-
-    // If the parentID refers to a merged body find the parent into which it has
-    // been merged and set lambda and XT accordingly
-    if (merged(parentID))
-    {
-        const subBody& sBody = mergedBody(parentID);
-        lambda_.append(sBody.masterID());
-        XT_.append(XT & sBody.masterXT());
-    }
-    else
-    {
-        lambda_.append(parentID);
-        XT_.append(XT);
-    }
-
-    // Append the joint
-    const joint& prevJoint = joints_[joints_.size() - 1];
-    joints_.append(jointPtr);
-    joint& curJoint = joints_[joints_.size() - 1];
-    curJoint.index() = joints_.size() - 1;
-    curJoint.qIndex() = prevJoint.qIndex() + prevJoint.nDoF();
-
-    // Increment the degrees of freedom
-    nDoF_ += curJoint.nDoF();
-    unitQuaternions_ = unitQuaternions_ || curJoint.unitQuaternion();
-
-    resizeState();
-
-    return bodyID;
-}
-
+// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
 Foam::label Foam::RBD::rigidBodyModel::join
 (

src/transportModels/incompressible/incompressibleTwoPhaseMixture/incompressibleTwoPhaseMixture.C

@@ -36,7 +36,7 @@ namespace Foam
 }
 
 
-// * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * * //
+// * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * * //
 
 void Foam::incompressibleTwoPhaseMixture::calcNu()
 {