Merge branch 'master' of ssh://noisy/home/noisy3/OpenFOAM/OpenFOAM-dev

applications/solvers/heatTransfer/buoyantSimpleFoam/pEqn.H

@@ -59,7 +59,8 @@
 
     rho = thermo->rho();
     rho.relax();
-    Info<< "rho max/min : " << max(rho).value() << " " << min(rho).value() << endl;
+    Info<< "rho max/min : " << max(rho).value() << " " << min(rho).value()
+        << endl;
 
     pd == p - (rho*gh + pRef);
 }

applications/utilities/mesh/generation/snappyHexMesh/Make/options

 EXE_INC = \
     /* -g -DFULLDEBUG -O0 */ \
-    -I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude \
+    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
     -I$(LIB_SRC)/autoMesh/lnInclude \
     -I$(LIB_SRC)/meshTools/lnInclude \
     -I$(LIB_SRC)/triSurface/lnInclude \
@@ -9,7 +9,6 @@ EXE_INC = \
     -I$(LIB_SRC)/finiteVolume/lnInclude
 
 EXE_LIBS = \
-    -L$(FOAM_MPI_LIBBIN) -lparMetisDecompositionMethod \
     -lfiniteVolume \
     -ldecompositionMethods \
     -lmeshTools \

applications/utilities/mesh/manipulation/renumberMesh/Make/options

@@ -2,7 +2,7 @@ EXE_INC = \
     -I$(LIB_SRC)/meshTools/lnInclude \
     -I$(LIB_SRC)/dynamicMesh/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
-    -I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude
+    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude
 
 EXE_LIBS = \
     -lmeshTools \

applications/utilities/parallelProcessing/decomposePar/Make/options

 EXE_INC = \
-    -I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude \
+    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/lagrangian/basic/lnInclude \
     -I$(LIB_SRC)/meshTools/lnInclude

applications/utilities/parallelProcessing/redistributeMeshPar/Make/options

 EXE_INC = \
-    -I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude \
+    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/meshTools/lnInclude \
     -I$(LIB_SRC)/dynamicMesh/lnInclude

applications/utilities/preProcessing/mapFields/mapLagrangian.C

@@ -223,6 +223,7 @@ void mapLagrangian(const meshToMesh& meshToMeshInterp)
                         {
                             unmappedSource.erase(sourceParticleI);
                             addParticles.append(sourceParticleI);
+			    iter().cell()=targetCell;
                             targetParcels.addParticle
                             (
                                 sourceParcels.remove(&iter())

bin/foamCleanPath

@@ -27,12 +27,12 @@
 #     foamCleanPath
 #
 # Description
-#     Usage: foamCleanPath path [wildcard] .. [wildcard]
+#     Usage: foamCleanPath [-strip] path [wildcard] .. [wildcard]
 #
 #     Prints its argument (which should be a ':' separated path)
 #     without all
 #         - duplicate elements
-#         - non-accessible directories
+#         - (if '-strip') non-accessible directories
 #         - elements whose start matches a wildcard
 #
 #     Note:
@@ -42,16 +42,25 @@
 if [ "$#" -lt 1 -o "$1" = "-h" -o "$1" = "-help" ]
 then
    cat <<USAGE 1>&2
-Usage: ${0##*/} path [wildcard] .. [wildcard]
+Usage: ${0##*/} [-strip] path [wildcard] .. [wildcard]
 
     Prints its argument (which should be a ':' separated list) cleansed from
       - duplicate elements
-      - non-accessible directories
       - elements whose start matches one of the wildcard(s)
+      - (if '-strip') non-accessible directories
 USAGE
    exit 1
 fi
 
+
+strip=''
+if [ "$1" = "-strip" ]
+then
+    strip=true
+    shift
+fi
+
+
 dirList="$1"
 shift
 
@@ -94,6 +103,10 @@ do
         then
             dirList="$dirList $dir"
         fi
+    elif [ "$strip" != "true" ]
+    then
+        # Print non-existing directories if not in 'strip' mode.
+        dirList="$dirList $dir"
     fi
 done
 

etc/bashrc

@@ -77,6 +77,12 @@ export WM_PROJECT_USER_DIR=$HOME/$WM_PROJECT/$USER-$WM_PROJECT_VERSION
 export WM_THIRD_PARTY_DIR=$WM_PROJECT_INST_DIR/ThirdParty
 
 
+# Operating System/Platform
+# ~~~~~~~~~~~~~~~~~~~~~~~~~
+# WM_OS = Unix | ????
+: ${WM_OS:=Unix}; export WM_OS
+
+
 # Compiler: set to Gcc, Gcc43 or Icc (for Intel's icc)
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 : ${WM_COMPILER:=Gcc}; export WM_COMPILER
@@ -146,10 +152,12 @@ Linux)
             ;;
         esac
         ;;
+
     ia64)
         WM_ARCH=linuxIA64
         export WM_COMPILER=I64
         ;;
+
     mips64)
         WM_ARCH=SiCortex64
         export WM_COMPILER_LIB_ARCH=64
@@ -160,6 +168,17 @@ Linux)
         export WM_LDFLAGS='-mabi=64 -G0'
         export WM_MPLIB=MPI
         ;;
+
+    ppc64)
+        WM_ARCH=linuxPPC64
+        export WM_COMPILER_LIB_ARCH=64
+        export WM_CC='gcc'
+        export WM_CXX='g++'
+        export WM_CFLAGS='-m64 -fPIC'
+        export WM_CXXFLAGS='-m64 -fPIC'
+        export WM_LDFLAGS='-m64'
+        ;;
+
     *)
         echo Unknown processor type `uname -m` for Linux
         ;;

etc/cshrc

@@ -71,6 +71,12 @@ setenv WM_PROJECT_USER_DIR $HOME/$WM_PROJECT/$LOGNAME-$WM_PROJECT_VERSION
 setenv WM_THIRD_PARTY_DIR $WM_PROJECT_INST_DIR/ThirdParty
 
 
+# Operating System/Platform
+# ~~~~~~~~~~~~~~~~~~~~~~~~~
+# WM_OS = Unix | ????
+if ( ! $?WM_OS ) setenv WM_OS Unix
+
+
 # Compiler: set to Gcc, Gcc43 or Icc (for Intel's icc)
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 if ( ! $?WM_COMPILER ) setenv WM_COMPILER Gcc
@@ -114,6 +120,7 @@ case Linux:
     switch (`uname -m`)
     case i686:
         breaksw
+
     case x86_64:
         switch ($WM_ARCH_OPTION)
         case 32:
@@ -125,6 +132,7 @@ case Linux:
             setenv WM_CXXFLAGS '-m32 -fPIC'
             setenv WM_LDFLAGS '-m32'
             breaksw
+
         case 64:
             setenv WM_ARCH linux64
             setenv WM_COMPILER_LIB_ARCH 64
@@ -134,15 +142,19 @@ case Linux:
             setenv WM_CXXFLAGS '-m64 -fPIC'
             setenv WM_LDFLAGS '-m64'
             breaksw
+
         default:
             echo Unknown WM_ARCH_OPTION $WM_ARCH_OPTION, should be 32 or 64
             breaksw
+
         endsw
         breaksw
+
     case ia64:
         setenv WM_ARCH linuxIA64
         setenv WM_COMPILER I64
         breaksw
+
     case mips64:
         setenv WM_ARCH SiCortex64
         setenv WM_COMPILER_LIB_ARCH 64
@@ -153,9 +165,21 @@ case Linux:
         setenv WM_LDFLAGS '-mabi=64 -G0'
         setenv WM_MPLIB MPI
         breaksw
+
+    case ppc64:
+        setenv WM_ARCH linuxPPC64
+        setenv WM_COMPILER_LIB_ARCH 64
+        setenv WM_CC 'gcc'
+        setenv WM_CXX 'g++'
+        setenv WM_CFLAGS '-m64 -fPIC'
+        setenv WM_CXXFLAGS '-m64 -fPIC'
+        setenv WM_LDFLAGS '-m64'
+        breaksw
+
     default:
         echo Unknown processor type `uname -m` for Linux
         breaksw
+
     endsw
     breaksw
 

etc/settings.csh

@@ -35,8 +35,6 @@
 alias _foamAddPath 'set path=(\!* $path)'
 # prefix to LD_LIBRARY_PATH
 alias _foamAddLib 'setenv LD_LIBRARY_PATH \!*\:${LD_LIBRARY_PATH}'
-# make directory if it doesn't already exist
-alias _foamMkDir 'if ( ! -d \!* ) mkdir -p \!*'
 
 # location of the jobControl directory
 setenv FOAM_JOB_DIR $WM_PROJECT_INST_DIR/jobControl
@@ -71,12 +69,6 @@ _foamAddPath $FOAM_USER_APPBIN
 _foamAddLib  $FOAM_LIBBIN
 _foamAddLib  $FOAM_USER_LIBBIN
 
-# create these directories if necessary:
-_foamMkDir $FOAM_LIBBIN
-_foamMkDir $FOAM_APPBIN
-_foamMkDir $FOAM_USER_LIBBIN
-_foamMkDir $FOAM_USER_APPBIN
-
 
 # Select compiler installation
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -130,9 +122,6 @@ case OPENMPI:
 
     _foamAddPath $MPI_ARCH_PATH/bin
     _foamAddLib  $MPI_ARCH_PATH/lib
-    # before compiling, these directories may not exist:
-    _foamMkDir   $MPI_ARCH_PATH/bin
-    _foamMkDir   $MPI_ARCH_PATH/lib
 
     setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
     unset mpi_version
@@ -147,9 +136,6 @@ case LAM:
 
     _foamAddPath $MPI_ARCH_PATH/bin
     _foamAddLib  $MPI_ARCH_PATH/lib
-    # before compiling, these directories may not exist:
-    _foamMkDir   $MPI_ARCH_PATH/bin
-    _foamMkDir   $MPI_ARCH_PATH/lib
 
     setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
     unset mpi_version
@@ -163,9 +149,6 @@ case MPICH:
 
     _foamAddPath $MPI_ARCH_PATH/bin
     _foamAddLib  $MPI_ARCH_PATH/lib
-    # before compiling, these directories may not exist:
-    _foamMkDir   $MPI_ARCH_PATH/bin
-    _foamMkDir   $MPI_ARCH_PATH/lib
 
     setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
     unset mpi_version
@@ -180,9 +163,6 @@ case MPICH-GM:
     _foamAddPath $MPI_ARCH_PATH/bin
     _foamAddLib  $MPI_ARCH_PATH/lib
     _foamAddLib  $GM_LIB_PATH
-    # before compiling, these directories may not exist:
-    _foamMkDir   $MPI_ARCH_PATH/bin
-    _foamMkDir   $MPI_ARCH_PATH/lib
 
     setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/mpich-gm
     breaksw
@@ -246,8 +226,6 @@ default:
 endsw
 
 _foamAddLib $FOAM_MPI_LIBBIN
-# before compiling, this directory may not exist:
-_foamMkDir  $FOAM_MPI_LIBBIN
 
 
 # Set the minimum MPI buffer size (used by all platforms except SGI MPI)
@@ -281,7 +259,6 @@ endif
 # ~~~~~~~~~~~~~~~~~~~~
 unalias _foamAddPath
 unalias _foamAddLib
-unalias _foamMkDir
 unset minBufferSize
 
 # -----------------------------------------------------------------------------

etc/settings.sh

@@ -52,17 +52,6 @@ _foamAddLib()
 }
 
 
-# make directories if they don't already exist
-_foamMkDir()
-{
-   while [ $# -ge 1 ]
-   do
-      [ -d $1 ] || mkdir -p $1
-      shift
-   done
-}
-
-
 # location of the jobControl directory
 export FOAM_JOB_DIR=$WM_PROJECT_INST_DIR/jobControl
 
@@ -94,9 +83,6 @@ export PATH=$WM_DIR:$WM_PROJECT_DIR/bin:$PATH
 _foamAddPath $FOAM_APPBIN $FOAM_USER_APPBIN
 _foamAddLib  $FOAM_LIBBIN $FOAM_USER_LIBBIN
 
-# create these directories if necessary:
-_foamMkDir $FOAM_LIBBIN $FOAM_USER_LIBBIN $FOAM_APPBIN $FOAM_USER_APPBIN
-
 
 # Compiler settings
 # ~~~~~~~~~~~~~~~~~
@@ -160,8 +146,6 @@ OPENMPI)
 
     _foamAddPath $MPI_ARCH_PATH/bin
     _foamAddLib  $MPI_ARCH_PATH/lib
-    # before compiling, these directories may not exist:
-    _foamMkDir   $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
 
     export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
     unset mpi_version
@@ -176,8 +160,6 @@ LAM)
 
     _foamAddPath $MPI_ARCH_PATH/bin
     _foamAddLib  $MPI_ARCH_PATH/lib
-    # before compiling, these directories may not exist:
-    _foamMkDir   $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
 
     export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
     unset mpi_version
@@ -191,8 +173,6 @@ MPICH)
 
     _foamAddPath $MPI_ARCH_PATH/bin
     _foamAddLib  $MPI_ARCH_PATH/lib
-    # before compiling, these directories may not exist:
-    _foamMkDir   $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
 
     export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
     unset mpi_version
@@ -207,8 +187,6 @@ MPICH-GM)
     _foamAddPath $MPI_ARCH_PATH/bin
     _foamAddLib  $MPI_ARCH_PATH/lib
     _foamAddLib  $GM_LIB_PATH
-    # before compiling, these directories may not exist:
-    _foamMkDir   $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
 
     export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/mpich-gm
     ;;
@@ -274,8 +252,6 @@ QSMPI)
 esac
 
 _foamAddLib $FOAM_MPI_LIBBIN
-# before compiling, this directory may not exist:
-_foamMkDir  $FOAM_MPI_LIBBIN
 
 
 # Set the minimum MPI buffer size (used by all platforms except SGI MPI)
@@ -304,6 +280,6 @@ export MPI_BUFFER_SIZE
 
 # cleanup environment:
 # ~~~~~~~~~~~~~~~~~~~~
-unset _foamAddPath _foamAddLib _foamMkDir minBufferSize
+unset _foamAddPath _foamAddLib minBufferSize
 
 # -----------------------------------------------------------------------------

src/Allwmake

@@ -18,7 +18,8 @@ wmake libso triSurface
 wmake libso edgeMesh
 wmake libso surfMesh
 
-decompositionAgglomeration/Allwmake
+# Decomposition methods needed by meshTools
+decompositionMethods/Allwmake
 
 wmake libso meshTools
 wmake libso finiteVolume
@@ -44,4 +45,6 @@ conversion/Allwmake
 wmake libso autoMesh
 wmake libso errorEstimation
 
+fvAgglomerationMethods/Allwmake
+
 # ----------------------------------------------------------------- end-of-file

src/autoMesh/Make/options

 EXE_INC = \
-    -I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude \
+    -I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
     -I$(LIB_SRC)/dynamicMesh/lnInclude \
     -I$(LIB_SRC)/finiteVolume/lnInclude \
     -I$(LIB_SRC)/lagrangian/basic/lnInclude \

src/autoMesh/autoHexMesh/meshRefinement/meshRefinementBaffles.C

@@ -1212,6 +1212,17 @@ void Foam::meshRefinement::findCellZoneTopo
     // by changing cell zone every time we cross a surface.
     while (true)
     {
+        // Synchronise regionToCellZone.
+        // Note:
+        // - region numbers are identical on all processors
+        // - keepRegion is identical ,,
+        // - cellZones are identical ,,
+        // This done at top of loop to account for geometric matching
+        // not being synchronised.
+        Pstream::listCombineGather(regionToCellZone, maxEqOp<label>());
+        Pstream::listCombineScatter(regionToCellZone);
+
+
         bool changed = false;
 
         // Internal faces
@@ -1292,14 +1303,6 @@ void Foam::meshRefinement::findCellZoneTopo
         {
             break;
         }
-
-        // Synchronise regionToCellZone.
-        // Note:
-        // - region numbers are identical on all processors
-        // - keepRegion is identical ,,
-        // - cellZones are identical ,,
-        Pstream::listCombineGather(regionToCellZone, maxEqOp<label>());
-        Pstream::listCombineScatter(regionToCellZone);
     }
 
 

src/decompositionAgglomeration/Allwmake → src/decompositionMethods/Allwmake

@@ -9,6 +9,4 @@ then
     (WM_OPTIONS=${WM_OPTIONS}$WM_MPLIB; wmake libso parMetisDecomp)
 fi
 
-wmake libso MGridGenGamgAgglomeration
-
 # ----------------------------------------------------------------- end-of-file