fixup doxygen for RAS/LES models, etc

src/dynamicMesh/polyTopoChange/polyTopoChange/hexRef8.C

@@ -50,15 +50,15 @@ namespace Foam
 {
     defineTypeNameAndDebug(hexRef8, 0);
 
-    // Reduction class. If x and y are not equal assign value.
+    //- Reduction class. If x and y are not equal assign value.
     template< int value >
     class ifEqEqOp
     {
         public:
         void operator()( label& x, const label& y ) const
         {
-            x = (x==y) ? x:value; 
-        }   
+            x = (x==y) ? x:value;
+        }
     };
 }
 

src/lagrangian/intermediate/clouds/Templates/KinematicCloud/KinematicCloud.H

@@ -27,6 +27,7 @@ Class
 
 Description
     Templated base class for kinematic cloud
+
     - Kinematic only
       - Dispersion model
       - Drag model

src/lagrangian/intermediate/parcels/Templates/KinematicParcel/KinematicParcel.H

@@ -27,7 +27,9 @@ Class
 
 Description
     Kinematic parcel class with one/two-way coupling with the continuous
-    phase. Sub-models include:
+    phase.
+
+    Sub-models include:
     - drag
     - break-up
     - wall interactions

src/lagrangian/intermediate/submodels/Kinematic/InjectionModel/ConeInjection/ConeInjection.H

@@ -27,6 +27,7 @@ Class
 
 Description
     Cone injection
+
     - User specifies
       - time of start of injection
       - injector position

src/meshTools/edgeFaceCirculator/edgeFaceCirculator.H

@@ -26,15 +26,15 @@ Class
     Foam::edgeFaceCirculator
 
 Description
-    Walks from starting face around edge. Implicit
-    description of edge:
+    Walks from starting face around edge.
+
+    Implicit description of edge:
     - face
     - index in face. edge is always between f[index] and f[index+1]
     - direction (cell to walk into)
 
-    Use as:
-
-        1) in-place:
+    -# Use in-place: \n
+        @code
             edgeFaceCirculator circ(..);
             // Optionally rotate to beginning: circ.setCanonical();
 
@@ -45,9 +45,10 @@ Description
                 ++circ;
             }
             while (circ != circ.end());
+        @endcode
 
-        2) like STL iterator:
-
+    -# Use like STL iterator: \n
+        @code
             edgeFaceCirculator circ(..);
             for
             (
@@ -58,6 +59,7 @@ Description
             {
                 Info<< "face:" << iter.face() << endl;
             }
+        @endcode
 
 
 SourceFiles

src/turbulenceModels/LES/compressible/LESModel/LESModel.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Namespace
-    Foam::compressible
+    Foam::compressible::LESModels
 
 Description
     Namespace for compressible LES models.

src/turbulenceModels/LES/incompressible/DeardorffDiffStress/DeardorffDiffStress.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::DeardorffDiffStress
+    Foam::incompressible::LESModels::DeardorffDiffStress
 
 Description
     Differential SGS Stress Equation Model for incompressible flows

src/turbulenceModels/LES/incompressible/GenEddyVisc/GenEddyVisc.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::GenEddyVisc
+    Foam::incompressible::LESModels::GenEddyVisc
 
 Description
     General base class for all incompressible models that can be implemented

src/turbulenceModels/LES/incompressible/GenSGSStress/GenSGSStress.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::GenSGSStress
+    Foam::incompressible::LESModels::GenSGSStress
 
 Description
     General base class for all incompressible models that directly

src/turbulenceModels/LES/incompressible/LESModel/LESModel.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Namespace
-    Foam::incompressible
+    Foam::incompressible::LESModels
 
 Description
     Namespace for incompressible LES models.

src/turbulenceModels/LES/incompressible/LRRDiffStress/LRRDiffStress.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::LRRDiffStress
+    Foam::incompressible::LESModels::LRRDiffStress
 
 Description
     Differential SGS Stress Equation Model for incompressible flows.

src/turbulenceModels/LES/incompressible/Smagorinsky/Smagorinsky.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::Smagorinsky
+    Foam::incompressible::LESModels::Smagorinsky
 
 Description
     The Isochoric Smagorinsky Model for incompressible flows.

src/turbulenceModels/LES/incompressible/Smagorinsky2/Smagorinsky2.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::Smagorinsky2
+    Foam::incompressible::LESModels::Smagorinsky2
 
 Description
     The Isochoric Smagorinsky Model for incompressible flows

src/turbulenceModels/LES/incompressible/SpalartAllmaras/SpalartAllmaras.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::SpalartAllmaras
+    Foam::incompressible::LESModels::SpalartAllmaras
 
 Description
     SpalartAllmaras for incompressible flows

src/turbulenceModels/LES/incompressible/dynMixedSmagorinsky/dynMixedSmagorinsky.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::dynMixedSmagorinsky
+    Foam::incompressible::LESModels::dynMixedSmagorinsky
 
 Description
     The Mixed Isochoric Smagorinsky Model for incompressible flows.

src/turbulenceModels/LES/incompressible/dynOneEqEddy/dynOneEqEddy.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::dynOneEqEddy
+    Foam::incompressible::LESModels::dynOneEqEddy
 
 Description
     One Equation Eddy Viscosity Model for incompressible flows.

src/turbulenceModels/LES/incompressible/dynSmagorinsky/dynSmagorinsky.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::dynSmagorinsky
+    Foam::incompressible::LESModels::dynSmagorinsky
 
 Description
     The Isochoric dynamic Smagorinsky Model for incompressible flows.
@@ -56,7 +56,7 @@ Description
         m = delta^2*(4*||F(D)||^2 - F(||D||^2))
         L = dev(F(U*U) - F(U)*F(U))
         M = delta^2*(F(||D||*dev(D)) - 4*||F(D)||*F(dev(D)))
-    @verbatim
+    @endverbatim
 
 SourceFiles
     dynSmagorinsky.C

src/turbulenceModels/LES/incompressible/laminar/laminar.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::laminar
+    Foam::incompressible::LESModels::laminar
 
 Description
     LES model for laminar incompressible flow.

src/turbulenceModels/LES/incompressible/locDynOneEqEddy/locDynOneEqEddy.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::locDynOneEqEddy
+    Foam::incompressible::LESModels::locDynOneEqEddy
 
 Description
     Localised Dynamic One Equation Eddy Viscosity Model for incompressible

src/turbulenceModels/LES/incompressible/mixedSmagorinsky/mixedSmagorinsky.H

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::incompressible::LES::mixedSmagorinsky
+    Foam::incompressible::LESModels::mixedSmagorinsky
 
 Description
     The mixed Isochoric Smagorinsky Model for incompressible flows.