being filled with cellLevel files, which generally breaks workflows

updateCoeffs(const scalarField&) -> updateWeightedCoeffs(const scalarField&)

to avoid confusion with other specialized forms of updateCoeffs.

Patch contributed by Mattijs Janssens

changeDictionary: Simplified by removing the need for the superfluous dictionaryReplacement sub-dictionary

Added the option '-subDict' to specify a sub-dictionary if multiple
replacement sets are present in the same file.  This also provides
backward compatibility by setting '-subDict dictionaryReplacement'

values; formatted Switch entries consistently across all cases

Usage: foamList [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -compressibleTurbulenceModels
                    List compressible turbulenceModels
  -functionObjects  List functionObjects
  -fvOptions        List fvOptions
  -incompressibleTurbulenceModels
                    List incompressible turbulenceModels
  -noFunctionObjects
                    do not execute functionObjects
  -registeredSwitches
                    List switches registered for run-time modification
  -scalarBCs        List scalar field boundary conditions (fvPatchField<scalar>)
  -switches         List switches declared in libraries but not set in
                    etc/controlDict
  -unset            List switches declared in libraries but not set in
                    etc/controlDict
  -vectorBCs        List vector field boundary conditions (fvPatchField<vector>)
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

Usage: foamList [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -compressibleTurbulenceModels
                    List compressible turbulenceModels
  -functionObjects  List functionObjects
  -fvOptions        List fvOptions
  -incompressibleTurbulenceModels
                    List incompressible turbulenceModels
  -noFunctionObjects
                    do not execute functionObjects
  -registeredSwitches
                    List switches registered for run-time modification
  -switches         List switches declared in libraries but not set in
                    etc/controlDict
  -unset            List switches declared in libraries but not set in
                    etc/controlDict
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

Instead of ICCG use PCG with the DIC preconditioner
Instead of BICCG use PBiCG with the DILU preconditioner

multiphaseCompressibleTurbulenceModels, twoPhaseCompressibleTurbulenceModels, phaseCompressibleTurbulenceModels: Added LIB_LIBS

Resolves bug-report http://bugs.openfoam.org/view.php?id=2120

    postProcess -func 'totalPressureIncompressible(U,p)'
or
    postProcess -func 'totalPressureCompressible(rho,U,p)'

To re-use existing 'sampleDict' files simply add the following entries:

    type sets;
    libs ("libsampling.so");

and run

    postProcess -func sampleDict

It is probably better to also rename 'sampleDict' -> 'sample' and then run

    postProcess -func sampleDict

e.g.
postProcess -func probes

or

postProcess -func 'probes(p, U)'

Replaced the 'postProcess' argument to the 'write' and 'execute'
functions with the single static member 'postProcess' in the
functionObject base-class.

e.g.
    postProcess -func 'patchAverage(name=inlet,p)'
    postProcess -func 'patchIntegrate(name=inlet,p)'

Resolves bug-report http://bugs.openfoam.org/view.php?id=2117

The use of the term 'source' in the context of post-processing is
confusing and does not properly describe the process of region
selection.  The new names 'surfaceRegion' and 'volRegion' better
describe the purpose of the functionObjects which is to provide field
processing functionality limited to a specified region of space, either
a surface or volume.

The keyword 'source' is renamed 'regionType' which better describes the
purpose which is to specify the method by which the surface or volume
region is selected.

The keyword to select the name of the surface or volume region is
renamed from 'sourceName' to 'name' consistent with the other
name-changes above.

In parallel the sets are reconstructed. e.g.

mpirun -np 6 checkMesh -parallel -allGeometry -allTopology -writeSets vtk

will create a postProcessing/ folder with the vtk files of the
(reconstructed) faceSets and cellSets.

Also improved analysis of disconnected regions now also checks for point
connectivity with is useful for detecting if AMI regions have duplicate
points.

Patch contributed by Mattijs Janssens

Allwmake -update: Further improvements to handle source-tree/dep file inconsistencies after git pull
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2091