Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1756

reactingEulerFoam: Updated handling of thermal diffusivity to support Prandtl number and thermal wall-functions

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1377

The built-in explicit symplectic integrator has been replaced by a
general framework supporting run-time selectable integrators.  Currently
the explicit symplectic, implicit Crank-Nicolson and implicit Newmark
methods are provided, all of which are 2nd-order in time:

Symplectic 2nd-order explicit time-integrator for 6DoF solid-body motion:

    Reference:
        Dullweber, A., Leimkuhler, B., & McLachlan, R. (1997).
        Symplectic splitting methods for rigid body molecular dynamics.
        The Journal of chemical physics, 107(15), 5840-5851.

    Can only be used for explicit integration of the motion of the body,
    i.e. may only be called once per time-step, no outer-correctors may be
    applied.  For implicit integration with outer-correctors choose either
    CrankNicolson or Newmark schemes.

    Example specification in dynamicMeshDict:
    solver
    {
        type    symplectic;
    }

Newmark 2nd-order time-integrator for 6DoF solid-body motion:

    Reference:
        Newmark, N. M. (1959).
        A method of computation for structural dynamics.
        Journal of the Engineering Mechanics Division, 85(3), 67-94.

    Example specification in dynamicMeshDict:
    solver
    {
        type    Newmark;
        gamma   0.5;    // Velocity integration coefficient
        beta    0.25;   // Position integration coefficient
    }

Crank-Nicolson 2nd-order time-integrator for 6DoF solid-body motion:

    The off-centering coefficients for acceleration (velocity integration) and
    velocity (position/orientation integration) may be specified but default
    values of 0.5 for each are used if they are not specified.  With the default
    off-centering this scheme is equivalent to the Newmark scheme with default
    coefficients.

    Example specification in dynamicMeshDict:
    solver
    {
        type    CrankNicolson;
        aoc     0.5;    // Acceleration off-centering coefficient
        voc     0.5;    // Velocity off-centering coefficient
    }

Both the Newmark and Crank-Nicolson are proving more robust and reliable
than the symplectic method for solving complex coupled problems and the
tutorial cases have been updated to utilize this.

In this new framework it would be straight forward to add other methods
should the need arise.

Henry G. Weller
CFD Direct

Ur can be generated using a functionObject or in the post-processor

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1868

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1872

to use the transport matrix construction in MovingPhaseModel

Patches provided by Bruno Santos
Resolves feature-request http://www.openfoam.org/mantisbt/view.php?id=1861

Now consistent with constructors.

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1227
Patch provided by Bruno Santos

between incompressible and compressible phases

Now combinations of incompressible, compressible phases with or without
mass-transfer are supported efficiently.

This file contains definitions rather than declarations

This makes looping over the phases much simpler which maintaining
support for phase-name lookup.

PtrListDictionary: New form of Dictionary in which the list type is PtrList rather than a linked-list

Supporting any number of phases with heat and mass transfer, phase-change and reactions

Provided by Bruno Santos
Resolves report http://www.openfoam.org/mantisbt/view.php?id=1767

Provided by Bruno Santos
Resolves report http://www.openfoam.org/mantisbt/view.php?id=1848

Patch provided by Daniel Jasinski
Resolved bug-report http://www.openfoam.org/mantisbt/view.php?id=1843

The previous method using a HashTable required a separate ordered list
of names which is hard to work with and maintain.

to allow the turbulent energy transport properties to be updated for
every energy solution if required.

Added correctEnergyTransport() call to reactingTwoPhaseEulerFoam

and two-phase functionality separated from multiphase functionality

Patch provided by Bruno Santos
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1826