Causes problems if the controlDict contains # entries

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1507

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=416

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1505

in particular to pick-up the DebugSwitches from system/controlDict at
global construction time.

Disadvantage is that system/controlDict is only picked-up if the
OpenFOAM application is executed IN the case directory.  The directory
provided by the -case option is not yet known as the arguments have not
yet been parsed.

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=452

 Class
     Foam::className
 =>
 \\class Foam::className

 Class
     Foam::namespaceName::
         className
 =>
 \\class Foam::namespaceName::className

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=252

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1502

From https://github.com/OpenFOAM/OpenFOAM-2.2.x/pull/1

tutorials/incompressible/pimpleFoam/elipsekkLOmega: added non-orthogonal correctors to improve stability when running longer

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1432

src/TurbulenceModels/incompressible/turbulentTransportModels/RAS/kkLOmega: Corrected errors in implementation and from original paper according to
    Furst, J. (2013).
    Numerical simulation of transitional flows with laminar kinetic energy.
    Engineering MECHANICS, 20(5), 379-388.

Thanks to Jan-Niklas Klatt for analysing problems with and correcting
the implementation and testing corrections to the model proposed by
Furst.

Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=1501

This is as temporary fix pending the completion of the selectable thermal transport layer

term to the more commonly used form of Henkes, R.A.W.M., Van Der Vlugt, F.F. & Hoogendoorn, C.J. (1991).

Added references to the generalized gradient diffusion model