CrankNicolsonDdtScheme: Corrected handling of the boundary field to avoid premature reset of the time-index
Resolves bug-report http://bugs.openfoam.org/view.php?id=2162

tutorials/multiphase/interDyMFoam/ras/floatingObject/constant/dynamicMeshDict.sixDoF: Renamed 'rho' -> 'rhoSolid'
to avoid name clash

TurbulenceModels: Reorganized support macros to simplify the creation of additional turbulence model libraries

References:
    Savill, A. M. (1993).
    Some recent progress in the turbulence modelling of by-pass transition.
    Near-wall turbulent flows, 829-848.

    Savill, A. M. (1996).
    One-point closures applied to transition.
    In Turbulence and transition modelling (pp. 233-268).
    Springer Netherlands.

Based on case contributed by Florian Schwertfirm, Kreuzinger und Manhart Turbulenz GmbH.

Description
    Langtry-Menter 4-equation transitional SST model
    based on the k-omega-SST RAS model.

    References:
        Langtry, R. B., & Menter, F. R. (2009).
        Correlation-based transition modeling for unstructured parallelized
        computational fluid dynamics codes.
        AIAA journal, 47(12), 2894-2906.

        Menter, F. R., Langtry, R., & Volker, S. (2006).
        Transition modelling for general purpose CFD codes.
        Flow, turbulence and combustion, 77(1-4), 277-303.

        Langtry, R. B. (2006).
        A correlation-based transition model using local variables for
        unstructured parallelized CFD codes.
        Phd. Thesis, Universität Stuttgart.

Implemented by Henry G. Weller, CFD Direct in collaboration with Florian
Schwertfirm, Kreuzinger und Manhart Turbulenz GmbH.

Resolves bug-report http://bugs.openfoam.org/view.php?id=2163

TurbulenceModels::kOmegaSST.*: Updated source-terms and associated functions to use volScalarField::Internal

This is more efficient, avoids divide-by-0 when evaluating unnecessary
boundary values and avoids unnecessary communications when running in parallel.

See also: StochasticDispersionRAS
Resolves bug-report http://bugs.openfoam.org/view.php?id=2153

Resolves bug-report http://bugs.openfoam.org/view.php?id=2153

Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2159

  - the checking for point-connected multiple-regions now also writes the
    conflicting points to a pointSet
  - with the -writeSets option it now also reconstructs & writes pointSets

Resolves bug-report http://bugs.openfoam.org/view.php?id=2153

rather than all processor
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=1936

Resolves bug-report http://bugs.openfoam.org/view.php?id=2158

Resolves bug-report http://bugs.openfoam.org/view.php?id=2156

Resolves bug-report http://bugs.openfoam.org/view.php?id=2156

Resolves bug-report http://bugs.openfoam.org/view.php?id=2148

rather than being calculated on construction and stored as member data.

The convergence warning has be replaced with the 'convergence()' member
function which returns 'true' if the SVD iteration converged, otherwise 'false'.

wclean: added support for automatic searching up the tree for the Make directory if in a sub-directory

Provides efficient integration of complex laminar reaction chemistry,
combining the advantages of automatic dynamic specie and reaction
reduction with ISAT (in situ adaptive tabulation).  The advantages grow
as the complexity of the chemistry increases.

References:
    Contino, F., Jeanmart, H., Lucchini, T., & D’Errico, G. (2011).
    Coupling of in situ adaptive tabulation and dynamic adaptive chemistry:
    An effective method for solving combustion in engine simulations.
    Proceedings of the Combustion Institute, 33(2), 3057-3064.

    Contino, F., Lucchini, T., D'Errico, G., Duynslaegher, C.,
    Dias, V., & Jeanmart, H. (2012).
    Simulations of advanced combustion modes using detailed chemistry
    combined with tabulation and mechanism reduction techniques.
    SAE International Journal of Engines,
    5(2012-01-0145), 185-196.

    Contino, F., Foucher, F., Dagaut, P., Lucchini, T., D’Errico, G., &
    Mounaïm-Rousselle, C. (2013).
    Experimental and numerical analysis of nitric oxide effect on the
    ignition of iso-octane in a single cylinder HCCI engine.
    Combustion and Flame, 160(8), 1476-1483.

    Contino, F., Masurier, J. B., Foucher, F., Lucchini, T., D’Errico, G., &
    Dagaut, P. (2014).
    CFD simulations using the TDAC method to model iso-octane combustion
    for a large range of ozone seeding and temperature conditions
    in a single cylinder HCCI engine.
    Fuel, 137, 179-184.

Two tutorial cases are currently provided:
    + tutorials/combustion/chemFoam/ic8h18_TDAC
    + tutorials/combustion/reactingFoam/laminar/counterFlowFlame2D_GRI_TDAC

the first of which clearly demonstrates the advantage of dynamic
adaptive chemistry providing ~10x speedup,

the second demonstrates ISAT on the modest complex GRI mechanisms for
methane combustion, providing a speedup of ~4x.

More tutorials demonstrating TDAC on more complex mechanisms and cases
will be provided soon in addition to documentation for the operation and
settings of TDAC.  Also further updates to the TDAC code to improve
consistency and integration with the rest of OpenFOAM and further
optimize operation can be expected.

Original code providing all algorithms for chemistry reduction and
tabulation contributed by Francesco Contino, Tommaso Lucchini, Gianluca
D’Errico, Hervé Jeanmart, Nicolas Bourgeois and Stéphane Backaert.

Implementation updated, optimized and integrated into OpenFOAM-dev by
Henry G. Weller, CFD Direct Ltd with the help of Francesco Contino.

Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2152

Based on a patch contributed by Francesco Contino, Tommaso Lucchini,
Gianluca D’Errico, Hervé Jeanmart, Nicolas Bourgeois and Stéphane
Backaert.

Note: this reuses the existing storage rather than costly reallocation
which requires the initial allocation to be sufficient for the largest
size the ODE system might have.  Attempt to set a size larger than the
initial size is a fatal error.