Merge foundation

Lots of style/API rename changes:

Indices in loops now using a lower case letter (?) - lots of code now in a 'mixed' state using I and i

GeometricField types

• DimensionedInternalField -> Internal
• PatchFieldType -> Patch
• GeometricBoundaryField -> Boundary

GeometricField access functions

• dimensionedInternalField() -> ref()
• internalField() -> primitiveField()

fvPatchField access

• dimensionedInternalField -> internalField()

Tutorials

• les renamed LES
• ras renamed RAS

Deprecated:

• expandDictionary -> foamDictionary -expand
• foamDebugSwitches -> foamDictionary/foamList -debug
• foamInfoExec -> foamDictionary
• secondaryWrite -> equivalent behaviour using function object time controls
• execFlowFunctionObjects -> new postProcess utility

Function objects

New

• components

Deprecated

• partialWrite -> set using adjustTime in writeRegistered FO
• stressComponents -> turbulenceFields -> components
• wallGradU -> grad
• patchAverage -> surfaceFieldValue + areaAverage
• patchIntegrate -> surfaceFieldValue + sum

Renamed

• createTurbulenceFields -> turbulenceFields
• faceSource -> surfaceFieldValue
• cellSource -> volFieldValue
• pressureTools -> pressure
• Peclet -> PecletNo

Syntax

• functionObjectLibs -> libs
• outputControl -> writeControl
• outputTime -> writeTime

Solvers

For postProcess:

• createFields.H split into createFields.H and createFieldsRef.H (references)
• all modelling construction moved to createFields, e.g. MRF

Added 18 commits:

• 9e4302a1...af1bec99 - 17 commits from branch develop
• a4ec968c - GIT: Resolved conflicts arising from merge with develop branch

By Andrew Heather on 2016-09-26T10:36:54 (imported from GitLab project)

Quite useful notes about differences. Thanks.

Added 1 commit:

• 5dee07df - ENH: Tutorial updates

By Andrew Heather on 2016-09-26T12:00:56 (imported from GitLab project)

Added 1 commit:

• 238dd7eb - STYLE: consistency updates

By Andrew Heather on 2016-09-27T14:23:16 (imported from GitLab project)

Added 1 commit:

• f03adfd4 - Correcting Typo in SolarLoad radiation model

Added 4 commits:

• ca63e2ad - ENH: Updated kOmegaSST family of models
• ee4ec36e - ENH: functionObjects - do not add to list if error on read
• 962cf790 - STYLE: forceCoeffs - minor code updates
• 92fb8789 - Merge branch 'merge-foundation' of develop.openfoam.com:Development/OpenFOAM-plu…

By Andrew Heather on 2016-09-29T15:28:14 (imported from GitLab project)

Added 45 commits:

• 758d76c7 - functionObjectList::readFunctionObject: Added support for region specification
• 648c777d - structuredRenumber: Corrected to run in parallel
• 52323f8d - codedFvOption: Added cellSet support
• ca4accb4 - wmake: Updated '-q' option to work on Ubuntu and other 'dash'-based GNU/Linux distributions
• 7531b2a4 - renumberMethods: Added missing .C file for structuredRenumber
• 017281a1 - combustionModels/FSD: Corrected
• ed068e4c - foamEtcFile: replaced redundant package directory name
• 9a13c991 - reactingEulerFoam/interfacialModels/dragModels: Corrected file permissions
• 3033d467 - Merge branch 'master' of github.com:OpenFOAM/OpenFOAM-dev
• a7210ecb - GAMGSolverSolve: Replace PBiCG with PBiCGStab to solve the coarsest-level of asymmetric matrices
• a28370dd - MGridGenGAMGAgglomeration: Update call to continueAgglomerating
• 2c90bd2e - rigidBodyMeshMotionSolver: experimental nDoF mesh-motion solver supporting the d…
• 47811eae - rigidBodyMotion: Change the transform averaging to use approximate inverse-distance weighting
• b4bf4be7 - GAMGAgglomeration: corrected continueAgglomerating
• 78e7952b - PatchToPatchInterpolate: Update to use the tmp ref() non-const access function
• a6ee4f5a - setInitialMultiRegionDeltaT: update to be consistent with the standard setInitialDeltaT
• fba2c4f2 - mapFields: reset the FOAM_CASE environment variable
• 87c78ca1 - blockMesh: Added block face orientation checks to aid debugging
• b07a783f - solvers: Moved createRDeltaT.H into createFields.H so that it is available with …
• 5df2c040 - reactingParcelFilmFoam: Corrected support for -postProcess option
• eb8d593d - foamList: Added missing -I$(LIB_SRC)/meshTools/lnInclude needed for recent changes to AMI
• 855f4246 - TurbulenceModels: Created a general base-class and selection mechanism for laminar stress models
• f6fa3d5c - Organisation of pimpleFoam tutorials into categories of turbulence modelling
• 3264ba7a - Maxwell model for viscoelasticity using the upper-convected time
• 10fb32db - tutorials: Renamed sub-directories ras -> RAS and les -> LES
• 2fd4b6bc - turbulentTransportModels: Add new Maxwell model
• 450779d2 - linearUpwind: Evaluate the gradient of each component of the field to provide su…
• 4fbdef64 - linearUpwind: Specialize for volVectorField to support cached gradients
• ee3cf860 - linearUpwind: Simplified the vector specialization
• a27eb13a - decomposePar: Corrected construction of cloud for processors
• 0e429dad - wmake: export WM_SCHEDULER from sub-shell for non-POSIX bash compliance
• 521d7a4a - globalIndexAndTransform: Support any number of transforms but no more than 3 per point
• 7a52d2a5 - globalMeshData: Revert NULL -> nullptr
• c169ca14 - Updated template formatting
• 8bbb379d - blockMesh: Added support for (<block> <face>) specification of patch faces
• 4603a8b2 - fvPatchFields: Constructors from dictionary now call the corresponding construct…
• c6b3632c - tutorials/incompressible/shallowWaterFoam/squareBump/.gmtcommands4: deleted
• 9d3f407f - processorFvPatchField: Reinstate 'value' as an optional entry
• 25e5f67f - processorFvPatchField: If the value is not supplied set to the internal field
• a96b1c23 - blockMesh::blockDescriptor: Added block indexing description
• f8d3a2a0 - pre-commit-hook: Added checks for multi-level template parameters and 'NULL'
• cdde2d63 - blockMesh: Added printing of the block description to the '-help' output
• deecbf9e - fvOptions: Corrected docs: 'fieldName' -> 'fields'
• 45aa96d9 - MRG: Initial commit after latest Foundation merge
• 3593098a - ENH: Code clean-up

By Andrew Heather on 2016-09-30T11:30:14 (imported from GitLab project)

Added 1 commit:

• cca5316f - ENH: Function objects - first pass at updating read functionality

By Andrew Heather on 2016-09-30T12:26:51 (imported from GitLab project)

Added 1 commit:

• c3e47134 - ENH: Tutorial updates

By Andrew Heather on 2016-09-30T14:31:46 (imported from GitLab project)

Added 10 commits:

• 3bc98784 - STYLE: bump to v1609+ for foundation merge version
• f43bef12 - STYLE: use POSIX 'unset -f' for functions (affects dash)
• 5c873516 - STYLE: cleanup compiler settings (issue #176 (closed))
• 483ed905 - STYLE: clean out clutter in paraview config files (issue #176 (closed))
• 5dc3b427 - CONFIG: remove foundation use of FOAMY_HEX_MESH control.
• 8dcb8a72 - COMP: remove boost/mpfr/gmp linkage for foamyMesh components.
• 168227c4 - GIT: resolve merge errors to ddt2, zeroGradient functionObjects
• 5bcdd402 - ENH: add -noZero option for foamToEnsight* conversion
• eed82fe2 - Merge remote-tracking branch 'origin/merge-foundation' into adjust-config-foundation-merge
• 40dcec9d - Merge branch 'adjust-config-foundation-merge' into 'merge-foundation'

By Andrew Heather on 2016-09-30T16:06:41 (imported from GitLab project)

Added 5 commits:

• ff28c484 - triangle storage: Return barycentric coordinates as FixedList instead of List
• a316584c - Field: Added constructor from UIndirectList
• 298003f3 - Map, SortableList: Added constructors from and assignment to initializer list
• dbba9060 - STYLE: minor updates
• c8fbc7f2 - MRG: Incremental foundation merge

By Andrew Heather on 2016-10-03T08:45:12 (imported from GitLab project)

Added 2 commits:

• e7a695e7 - STYLE: minor adjustments to doxygen comments
• 5dc7364a - Merge branch 'doxygen-style' into 'merge-foundation'

By Andrew Heather on 2016-10-04T07:45:43 (imported from GitLab project)

Added 8 commits:

• 18ab8abd - ENH: cleanup Ostream to ease usage (issue #254 (closed))
• fdd6cb50 - ENH: subdict output with leading name (issue #255 (closed))
• 7dbde55f - ENH: provide formatting version of Foam::name() (issue #253 (closed))
• ff8e811a - STYLE: minor simplification of check for uniform contents
• 62115802 - STYLE: minor improvement when writing list entry
• c1b31325 - STYLE: extraneous UINT64_MIN macros (issue #257 (closed))
• 006eebdf - ENH: remove unneeded lines in List binary output (issue #256 (closed))
• 4321e06a - Merge branch 'output-format' into 'merge-foundation'

By Andrew Heather on 2016-10-04T09:28:35 (imported from GitLab project)

Added 12 commits:

• 4321e06a...303b45dc - 9 commits from branch develop
• 32707482 - GIT: Resolved conflict
• d41e7c86 - COMP: Corrected Clang-reported errors
• 13023ecd - Merge branch 'merge-foundation' of develop.openfoam.com:Development/OpenFOAM-plu…

By Andrew Heather on 2016-10-04T13:49:52 (imported from GitLab project)

Added 2 commits:

• 1fad5ef2 - BUG: paraview plugin not being built in merged version (closes #258 (closed))
• 2025a2eb - Merge branch 'issue258-merge-foundation' into 'merge-foundation'

By Andrew Heather on 2016-10-04T14:28:23 (imported from GitLab project)

Added 2 commits:

• cba60be4 - BUG: snappyHexMesh: assing to boundaryField. Fixes #260 (closed).
• 5db9f70c - Merge branch 'merge-foundation' of develop.openfoam.com:Development/OpenFOAM-plu…

Added 5 commits:

• 1d57cfec - ENH: ease access restrictions on meshReader data structures (issue #204 (closed))
• 2dbe05dc - STYLE: Remove meshReaders/meshWriters namespace (issue #204 (closed))
• b6f7bac8 - DEFEATURE: remove samm, pro-am, prostar3 convertors (issue #204 (closed))
• 7916600b - GIT: rearrange files for lib-conversion
• b9e3f52a - Merge branch 'merge-preconvert' into 'merge-foundation'

By Andrew Heather on 2016-10-07T10:02:13 (imported from GitLab project)

Added 2 commits:

• 78d35379 - STYLE: reinstate targetType when building paraview modules (related to #258 (closed))
• 1564c571 - Merge branch 'issue258-adjustment' into 'merge-foundation'

By Andrew Heather on 2016-10-07T10:02:47 (imported from GitLab project)

Added 5 commits:

• 56899443 - BUG: corrected constructor
• 099be607 - STYLE: Updated Doxygen comment markers
• 6494f407 - BUG: Corrected assignment to reference object
• 507ec54b - GIT: Resolved conflict
• fd07bb1c - ENH: residuals function object - store results for further processing

By Andrew Heather on 2016-10-07T13:21:12 (imported from GitLab project)

Added 2 commits:

• c22334cc - ENH: Adding eddyDissipationDiffusionModel, thermocouple probe and thermocoupleTestCase
• 976ea635 - Merge branch 'merge-foundation' of develop.openfoam.com:Development/OpenFOAM-plu…