foamJob

#!/bin/sh
#------------------------------------------------------------------------------
# =========                 |
# \\      /  F ield         | foam-extend: Open Source CFD
#  \\    /   O peration     | Version:     4.1
#   \\  /    A nd           | Web:         http://www.foam-extend.org
#    \\/     M anipulation  | For copyright notice see file Copyright
#------------------------------------------------------------------------------
# License
#     This file is part of foam-extend.
#
#     foam-extend is free software: you can redistribute it and/or modify it
#     under the terms of the GNU General Public License as published by the
#     Free Software Foundation, either version 3 of the License, or (at your
#     option) any later version.
#
#     foam-extend is distributed in the hope that it will be useful, but
#     WITHOUT ANY WARRANTY; without even the implied warranty of
#     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
#     General Public License for more details.
#
#     You should have received a copy of the GNU General Public License
#     along with foam-extend.  If not, see <http://www.gnu.org/licenses/>.
#
# Script
#     foamJob
#
# Description
#
#------------------------------------------------------------------------------
usage() {
   while [ "$#" -ge 1 ]; do echo "$1"; shift; done
   cat<<USAGE

usage: ${0##*/} [OPTION] <application> ...

options:
  -case dir     specify case directory
  -s            also sends output to screen
  -p            parallel run of processors
  -v ver        specify OpenFOAM version
  -help         this usage

* run an OpenFOAM job in background.
  Redirects the output to 'log' in the case directory

USAGE
   exit 1
}

unset version

# replacement for possibly buggy 'which'
findExec() {
   case "$1" in
   */*)
      if [ -x "$1" ] ; then
         echo "$1"
         return 0
      fi
      ;;
   esac

   oldIFS=$IFS
   IFS=':'
   for d in $PATH
   do
      # echo "testing: $d/$1" 1>&2
      if [ -x "$d/$1" -a ! -d "$d/$1" ] ; then
         # echo "Found exec: $d/$1" 1>&2
         IFS=$oldIFS
         echo "$d/$1"
         return 0
      fi
   done
   IFS=$oldIFS
   echo ""
   return 1
}

# grep for $1
getPID() {
   ps -u $LOGNAME -o 'pid,args' | fgrep "$1 " | fgrep -v grep | head -1 | awk '{ print $1 }'
}


consultGuide() {
cat<<EOF

Please consult the User Guide for details of parallel running
EOF
}

# MAIN SCRIPT
#~~~~~~~~~~~~
SCREEN=no
PARALLEL=no


# parse options
while [ "$#" -gt 0 ]
do
   case "$1" in
   -h | -help)
      usage
      ;;
   -case)
      [ "$#" -ge 2 ] || usage "'-case' option requires an argument"
      caseDir=$2
      shift 2
      cd "$caseDir" 2>/dev/null || usage "directory does not exist:  '$caseDir'"
      ;;
   -s)
      SCREEN=yes
      shift
      ;;
   -p)
      PARALLEL=yes
      shift
      ;;
   -v)
      shift
      version=$1
      shift
      ;;
   --)
      shift
      break
      ;;
   -*)
      usage "invalid option '$1'"
      ;;
   *)
      break
      ;;
   esac
done

if [ "$#" -lt 1 ]; then
   usage "No application specified"
fi

# use foamExec for a specified version and for remote (parallel) runs
if [ -n "$version" -o "$PARALLEL" = yes ]; then
   APPLICATION=`findExec foamExec`
   if [ $? -ne 0 ]; then
      usage "'foamExec' not found"
   fi
   if [ -n "$version" ]; then
      APPLICATION="$APPLICATION -v $version"
   fi
else
   APPLICATION=`findExec $1`
   if [ $? -ne 0 ]; then
      usage "Application '$1' executable not found"
   fi
   echo "Application : $1"
   shift
fi

if [ "$PARALLEL" = no ]; then
#
#   RUN ON SINGLE PROCESSOR
#
    if [ "$SCREEN" = no ]; then
       echo "Executing: $APPLICATION $@ > log 2>&1 &"
       $APPLICATION $@ > log 2>&1 &
    else
       echo "Executing: $APPLICATION $@ | tee log &"
       $APPLICATION $@ | tee log &
       wait $!
    fi
else

#
#   IS THE CASE DECOMPOSED?
#
   if [ -r "processor0" ] ; then
      NPROCS="`/bin/ls -1d processor* | wc -l`"
   else
      echo "Case is not currently decomposed"
      if [ -r system/decomposeParDict ] ; then
         echo "system/decomposeParDict exists"
         echo "Try decomposing with \"foamJob decomposePar\""
         exit 1
      else
         echo "Cannot find system/decomposeParDict file required to decompose the case for parallel running."
         consultGuide
         exit 1
      fi
   fi
#
#   LOCATE MPIRUN
#
   mpirun=`findExec mpirun`
   if [ $? -ne 0 ]; then
      usage "'mpirun' not found"
   fi
   mpiopts="-np $NPROCS"

#
#   IS THE MACHINE READY TO RUN PARALLEL?
#
   echo "Parallel processing using $WM_MPLIB with $NPROCS processors"
   case "$WM_MPLIB" in
   OPENMPI)
      # add hostfile info
      for hostfile in \
         hostfile \
         machines \
         system/hostfile \
         system/machines \
      ;
      do
         if [ -r $hostfile ]; then
            mpiopts="$mpiopts -hostfile $hostfile"
            break
         fi
      done
      ;;
   esac

#
#   RUN IN PARALLEL
#
   if [ "$SCREEN" = no ] ; then
      echo "Executing: mpirun $mpiopts $APPLICATION $@ -parallel > log 2>&1"
      $mpirun $mpiopts $APPLICATION $@ -parallel > log 2>&1 &
   else
      echo "Executing: mpirun $mpiopts $APPLICATION $@ -parallel | tee log"
      $mpirun $mpiopts $APPLICATION $@ -parallel  | tee log
   fi
fi

#------------------------------------------------------------------------------