small updates and removing X permissions

0c1d0884 · Andrew Heather · af88d9be · 0c1d0884 · 0c1d0884 · 0c1d0884
Commit 0c1d0884 authored 17 years ago by Andrew Heather
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCodeSnippets.H
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCodeSnippets.H
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudI.H
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudI.H
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudIntegrateEquationsOfMotion.C
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudIntegrateEquationsOfMotion.C
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudReadMDParameters.H
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudReadMDParameters.H
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRealCellsInRangeOfSegment.C
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRealCellsInRangeOfSegment.C
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudReferredCellsInRangeOfSegment.C
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudReferredCellsInRangeOfSegment.C
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlaps.C
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlaps.C
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlapsRealCells.H
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlapsRealCells.H
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlapsRealCellsCalculationStep.H
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlapsRealCellsCalculationStep.H
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlapsReferredCells.H
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlapsReferredCells.H
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudTestEdgeEdgeDistance.C
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudTestEdgeEdgeDistance.C
--- a/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudTestPointFaceDistance.C
+++ b/src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudTestPointFaceDistance.C
--- a/src/lagrangian/molecularDynamics/molecule/referralLists/receivingReferralList.C
+++ b/src/lagrangian/molecularDynamics/molecule/referralLists/receivingReferralList.C
--- a/src/lagrangian/molecularDynamics/molecule/referralLists/receivingReferralList.H
+++ b/src/lagrangian/molecularDynamics/molecule/referralLists/receivingReferralList.H
--- a/src/lagrangian/molecularDynamics/molecule/referralLists/receivingReferralListI.H
+++ b/src/lagrangian/molecularDynamics/molecule/referralLists/receivingReferralListI.H
--- a/src/lagrangian/molecularDynamics/molecule/referralLists/sendingReferralList.C
+++ b/src/lagrangian/molecularDynamics/molecule/referralLists/sendingReferralList.C
--- a/src/lagrangian/molecularDynamics/molecule/referralLists/sendingReferralList.H
+++ b/src/lagrangian/molecularDynamics/molecule/referralLists/sendingReferralList.H
--- a/src/lagrangian/molecularDynamics/molecule/referralLists/sendingReferralListI.H
+++ b/src/lagrangian/molecularDynamics/molecule/referralLists/sendingReferralListI.H
--- a/src/lagrangian/molecularDynamics/molecule/referredCell/referredCell.C
+++ b/src/lagrangian/molecularDynamics/molecule/referredCell/referredCell.C
--- a/src/lagrangian/molecularDynamics/molecule/referredCell/referredCell.H
+++ b/src/lagrangian/molecularDynamics/molecule/referredCell/referredCell.H