Commit b2ecadd9 authored by mattijs's avatar mattijs
Browse files

Merge branch 'master' of /home/noisy3/OpenFOAM/OpenFOAM-dev

parents becfce67 c3289a9b
......@@ -35,8 +35,6 @@
alias _foamAddPath 'set path=(\!* $path)'
# prefix to LD_LIBRARY_PATH
alias _foamAddLib 'setenv LD_LIBRARY_PATH \!*\:${LD_LIBRARY_PATH}'
# make directory if it doesn't already exist
alias _foamMkDir 'if ( ! -d \!* ) mkdir -p \!*'
# location of the jobControl directory
setenv FOAM_JOB_DIR $WM_PROJECT_INST_DIR/jobControl
......@@ -71,12 +69,6 @@ _foamAddPath $FOAM_USER_APPBIN
_foamAddLib $FOAM_LIBBIN
_foamAddLib $FOAM_USER_LIBBIN
# create these directories if necessary:
_foamMkDir $FOAM_LIBBIN
_foamMkDir $FOAM_APPBIN
_foamMkDir $FOAM_USER_LIBBIN
_foamMkDir $FOAM_USER_APPBIN
# Select compiler installation
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
......@@ -130,9 +122,6 @@ case OPENMPI:
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin
_foamMkDir $MPI_ARCH_PATH/lib
setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
unset mpi_version
......@@ -147,9 +136,6 @@ case LAM:
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin
_foamMkDir $MPI_ARCH_PATH/lib
setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
unset mpi_version
......@@ -163,9 +149,6 @@ case MPICH:
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin
_foamMkDir $MPI_ARCH_PATH/lib
setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
unset mpi_version
......@@ -180,9 +163,6 @@ case MPICH-GM:
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
_foamAddLib $GM_LIB_PATH
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin
_foamMkDir $MPI_ARCH_PATH/lib
setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/mpich-gm
breaksw
......@@ -246,8 +226,6 @@ default:
endsw
_foamAddLib $FOAM_MPI_LIBBIN
# before compiling, this directory may not exist:
_foamMkDir $FOAM_MPI_LIBBIN
# Set the minimum MPI buffer size (used by all platforms except SGI MPI)
......@@ -281,7 +259,6 @@ endif
# ~~~~~~~~~~~~~~~~~~~~
unalias _foamAddPath
unalias _foamAddLib
unalias _foamMkDir
unset minBufferSize
# -----------------------------------------------------------------------------
......@@ -52,17 +52,6 @@ _foamAddLib()
}
# make directories if they don't already exist
_foamMkDir()
{
while [ $# -ge 1 ]
do
[ -d $1 ] || mkdir -p $1
shift
done
}
# location of the jobControl directory
export FOAM_JOB_DIR=$WM_PROJECT_INST_DIR/jobControl
......@@ -94,9 +83,6 @@ export PATH=$WM_DIR:$WM_PROJECT_DIR/bin:$PATH
_foamAddPath $FOAM_APPBIN $FOAM_USER_APPBIN
_foamAddLib $FOAM_LIBBIN $FOAM_USER_LIBBIN
# create these directories if necessary:
_foamMkDir $FOAM_LIBBIN $FOAM_USER_LIBBIN $FOAM_APPBIN $FOAM_USER_APPBIN
# Compiler settings
# ~~~~~~~~~~~~~~~~~
......@@ -160,8 +146,6 @@ OPENMPI)
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
unset mpi_version
......@@ -176,8 +160,6 @@ LAM)
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
unset mpi_version
......@@ -191,8 +173,6 @@ MPICH)
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
unset mpi_version
......@@ -207,8 +187,6 @@ MPICH-GM)
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
_foamAddLib $GM_LIB_PATH
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/mpich-gm
;;
......@@ -274,8 +252,6 @@ QSMPI)
esac
_foamAddLib $FOAM_MPI_LIBBIN
# before compiling, this directory may not exist:
_foamMkDir $FOAM_MPI_LIBBIN
# Set the minimum MPI buffer size (used by all platforms except SGI MPI)
......@@ -304,6 +280,6 @@ export MPI_BUFFER_SIZE
# cleanup environment:
# ~~~~~~~~~~~~~~~~~~~~
unset _foamAddPath _foamAddLib _foamMkDir minBufferSize
unset _foamAddPath _foamAddLib minBufferSize
# -----------------------------------------------------------------------------
......@@ -71,8 +71,8 @@ void Foam::SIBS::solve
const ODE& ode,
scalar& x,
scalarField& y,
scalarField& dydx,
const scalar eps,
scalarField& dydx,
const scalar eps,
const scalarField& yScale,
const scalar hTry,
scalar& hDid,
......@@ -96,7 +96,7 @@ void Foam::SIBS::solve
{
for (register label k=0; k<iq; k++)
{
alpha_[k][iq] =
alpha_[k][iq] =
pow(eps1, (a_[k + 1] - a_[iq + 1])
/((a_[iq + 1] - a_[0] + 1.0)*(2*k + 3)));
}
......
......@@ -29,8 +29,8 @@ Description
Foam::SIBS
SourceFiles
SIBSCK.C
SIBSQS.C
SIMPR.C
polyExtrapolate.C
\*---------------------------------------------------------------------------*/
......@@ -61,7 +61,7 @@ class SIBS
mutable scalarField a_;
mutable scalarSquareMatrix alpha_;
mutable scalarSquareMatrix d_p_;
mutable scalarRectangularMatrix d_p_;
mutable scalarField x_p_;
mutable scalarField err_;
......@@ -75,30 +75,31 @@ class SIBS
mutable scalar epsOld_, xNew_;
void SIMPR
(
const ODE& ode,
const scalar xStart,
const scalarField& y,
const scalarField& dydx,
const scalarField& dfdx,
const scalarSquareMatrix& dfdy,
const scalar deltaX,
const label nSteps,
scalarField& yEnd
) const;
void polyExtrapolate
(
const label iest,
const scalar xest,
const scalarField& yest,
scalarField& yz,
scalarField& dy,
scalarField& x_p,
scalarSquareMatrix& d_p
) const;
// Private member functions
void SIMPR
(
const ODE& ode,
const scalar xStart,
const scalarField& y,
const scalarField& dydx,
const scalarField& dfdx,
const scalarSquareMatrix& dfdy,
const scalar deltaX,
const label nSteps,
scalarField& yEnd
) const;
void polyExtrapolate
(
const label iest,
const scalar xest,
const scalarField& yest,
scalarField& yz,
scalarField& dy,
scalarField& x_p,
scalarRectangularMatrix& d_p
) const;
public:
......
......@@ -36,7 +36,7 @@ void Foam::SIBS::polyExtrapolate
scalarField& yz,
scalarField& dy,
scalarField& x,
scalarSquareMatrix& d
scalarRectangularMatrix& d
) const
{
label n = yz.size();
......
......@@ -13,7 +13,7 @@ reactingMixture = $(mixtures)/reactingMixture
$(chemistryReader)/chemistryReader.C
$(foamChemistryReader)/foamChemistryReader.C
$(chemkinReader)/chemkinReader.C
$(chemkinReader)/chemkinLexer.C
$(chemkinReader)/chemkinLexer.L
$(combustionMixture)/combustionMixture.C
$(reactingMixture)/reactingMixture.C
......
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