- make tar-file generation more flexible

Feature surface handling

See merge request !343

- base level surface container is now a meshedSurface instead of
  a triSurface. This avoid automatic triangulation of surfaces
  when they are read, and simplifies the internals.

- sampling types:
  * "meshedSurface" (compat: "sampledTriSurfaceMesh")
  * "meshedSurfaceNormal" (compat: "sampledTriSurfaceMeshNormal")

- uses MeshedSurface instead of triSurface to prevent automatic
  triangulation.

- supports '-patches' and '-excludePatches' controls as per foamToVTK.
  For example,

    surfaceSplitByPatch -patches '( ".*rider.*" )'  motorBike.obj

ENH: use MeshedSurface for surfaceSubset

- removed swapZones method (unused, potentially fragile)

- add subsetMesh by name

BUG: incorrect zone assignment in MeshedSurface::subsetMesh

- used the new (zero-sized) zone when determining the old zone ending
  instead of the original zone bounds.

- use local branching for face maps to reduce code complexity
  and duplication

- refactor logic from triSurfaceMesh for triSurface, MeshedSurface,
  UnsortedMeshedSurface.

  Makes it easier to locate and use surface files without the
  triSurfaceMesh (meshTools) infrastructure.

STYLE: remove unused sampledTriSurfaceMesh constructors

- coordinateSystems, DictionaryBase

ENH: improve access to the inner content of turbulence models

See merge request !344

Kutalmış Berçin authored 5 years ago and Andrew Heather committed 5 years ago

  STYLE: update dimensionSets in SpalartAllmaras

Often we want to copy a field and replace boundary conditions, e.g. change type
to calculated for some patches.  This has typically been achieved by creating a
word list of new patch types which are then fed through to the fvPatchField::New
factory method.  This is OK for types that require no additional input (usually
from dictionary) but leaves other more complex types partially
constructed/usable.

The new constructor clones all BCs except those with indices specified, for
which the fvPatchField::New method is called for the supplied patch field type.

ENH: lduMatrix: new matrix solvers: PPCG,PPCR

See merge request !334

Mattijs Janssens authored 5 years ago and Andrew Heather committed 5 years ago

PPCG is pipelined version of PCG, PPCR is conjugate
residual version.

- support postOperation for volFieldValue as well

Proper counting of regime on faces of the patch

ENH: improve analytic eigen for small off-diagonals

See merge request !342

- avoid face copying.
  Maintain separate offsets/list for non tri/quad face decomposition,
  which eliminates copying for tri/quad types that represent the bulk
  of geometries

- report inappropriate use of PLOAD2 for higher-ranks only once per
  field instead of per face.  For this case, write its magnitude
  instead of 0.

- perform field output scaling prior to calling the write face
  function. This will make it easier to handle different per-field
  scaling in the future (#1612)

BUG: nastran quad written as "CTRIA3" instead of "CQUAD4"

- refactored from ensightMesh, foamToVTK, surfaceMeshExtract

STYLE: use wordRes matching() method instead of findString() function

- use point::uniform in more places