functionObjects::XiReactionRate: Writes the turbulent flame-speed and reaction-rate volScalarFields for the Xi-based combustion models

Replaces the obsolete and 'wdot' utility.

postProcess -func writeCellCentres

Patch contributed by Mattijs Janssens

  - patchFields now get mapped (instead of created)
  - with -consistent it now maps all patches except for processor ones (they are
    the only ones that are processor-local)
  - all constraint patches get evaluated after mapping to bring them up to date.

Patch contributed by Mattijs Janssens

changeDictionary: Simplified by removing the need for the superfluous dictionaryReplacement sub-dictionary

Added the option '-subDict' to specify a sub-dictionary if multiple
replacement sets are present in the same file.  This also provides
backward compatibility by setting '-subDict dictionaryReplacement'

Usage: foamList [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -compressibleTurbulenceModels
                    List compressible turbulenceModels
  -functionObjects  List functionObjects
  -fvOptions        List fvOptions
  -incompressibleTurbulenceModels
                    List incompressible turbulenceModels
  -noFunctionObjects
                    do not execute functionObjects
  -registeredSwitches
                    List switches registered for run-time modification
  -scalarBCs        List scalar field boundary conditions (fvPatchField<scalar>)
  -switches         List switches declared in libraries but not set in
                    etc/controlDict
  -unset            List switches declared in libraries but not set in
                    etc/controlDict
  -vectorBCs        List vector field boundary conditions (fvPatchField<vector>)
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

Usage: foamList [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -compressibleTurbulenceModels
                    List compressible turbulenceModels
  -functionObjects  List functionObjects
  -fvOptions        List fvOptions
  -incompressibleTurbulenceModels
                    List incompressible turbulenceModels
  -noFunctionObjects
                    do not execute functionObjects
  -registeredSwitches
                    List switches registered for run-time modification
  -switches         List switches declared in libraries but not set in
                    etc/controlDict
  -unset            List switches declared in libraries but not set in
                    etc/controlDict
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

    postProcess -func 'totalPressureIncompressible(U,p)'
or
    postProcess -func 'totalPressureCompressible(rho,U,p)'

To re-use existing 'sampleDict' files simply add the following entries:

    type sets;
    libs ("libsampling.so");

and run

    postProcess -func sampleDict

It is probably better to also rename 'sampleDict' -> 'sample' and then run

    postProcess -func sampleDict

e.g.
postProcess -func probes

or

postProcess -func 'probes(p, U)'

Replaced the 'postProcess' argument to the 'write' and 'execute'
functions with the single static member 'postProcess' in the
functionObject base-class.

e.g.
    postProcess -func 'patchAverage(name=inlet,p)'
    postProcess -func 'patchIntegrate(name=inlet,p)'

In parallel the sets are reconstructed. e.g.

mpirun -np 6 checkMesh -parallel -allGeometry -allTopology -writeSets vtk

will create a postProcessing/ folder with the vtk files of the
(reconstructed) faceSets and cellSets.

Also improved analysis of disconnected regions now also checks for point
connectivity with is useful for detecting if AMI regions have duplicate
points.

Patch contributed by Mattijs Janssens

Replaces expandDictionary utility

stressComponents: utility replaced by the 'R' and 'components' functionObject used with the '-postProcess' option