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  1. Oct 18, 2016
    • Mark Olesen's avatar
      BUG: foamCleanPath problem if path contains @ (closes #264) · 03b5d5c1
      Mark Olesen authored
      - Can occur with some user names, or mounted paths.
        Resolve by using '?' for the separation character.
      
        Since '?' is a shell-glob, it is highly unlikely to occur appear in
        filenames.  Additionally, it is not a meta-character in standard sed,
        nor in the GNU extension (which uses '\?').
      03b5d5c1
  2. Oct 17, 2016
  3. Oct 04, 2016
    • Andrew Heather's avatar
      Merge branch 'feature-wallDistanceCalcInterval' into 'develop' · 35fc264a
      Andrew Heather authored
      ENH: wallDist - added option to evaluate every XXX steps
      
      Added functionality to update the wall distance every XXX steps
      
      Note: only applies to movePoints() - topology change bypasses the update interval and triggers a re-calculation
      Syntax:
      ```
      wallDist
      {
          method          ...
          updateInterval 5; // optional - default is 1
      }
      ```
      
      Test case: [mixerVesselAMI2D.tgz](/uploads/c0bee1decc0337018272f3566b6a4416/mixerVesselAMI2D.tgz)
      
      See merge request !62
      35fc264a
  4. Oct 03, 2016
    • Mark Olesen's avatar
      ENH: provide direct access to raw pointer/reference from autoPtr (issue #252) · 96c3a090
      Mark Olesen authored
      All of the access methods for autoPtr include validity checks and will
      fail if the underlying point is NULL. In some cases, however, we'd
      like to retain the automatic deletion mechanism, but still address a
      nullptr. This is mostly for cases in which a file-stream should be
      allocated, but only on the master process. For these cases we'd still
      like to pass through and reference the underlying pointer (eg, to
      obtain the correct method call) without tripping the pointer check
      mechanism. If we attempt to use the ptr() method, the autoPtr memory
      management is bypassed and we risk memory leaks.
      
      Instead provide an alternative mechanism to obtain the raw underlying
      pointers/references. Use rawPtr() and rawRef() for these potentially
      useful, but also potentially dangerous, operations.
      96c3a090
    • mattijs's avatar
  5. Sep 30, 2016
  6. Sep 28, 2016
  7. Sep 27, 2016
  8. Sep 26, 2016
  9. Sep 23, 2016
  10. Sep 21, 2016
    • Mark Olesen's avatar
      ENH: improve startup time for foamToEnsight conversion (issue #240). · 0c168c43
      Mark Olesen authored
      Old code:
          Found 10990 time steps
          Search for moving mesh ... no moving mesh detected.
          Startup in 329.09 s
      
      Updated:
          Found 10990 time steps
          Search for moving mesh ... no moving mesh detected.
          Startup in 1.6 s
      
      - Cause was checking "polyMesh/points" via an IOobject.
        Short-circuit with a check for a polyMesh/ directory first.
      
        Limit the check to the master-node as well to further reduce
        load on the file-system.
      
      ------------------------------
      
      ENH: improve per-step conversion times for foamToEnsight.
      
      Old code:
          Converting 11001 time steps
          Time [0] = 0       Wrote in 1.53 s
          Time [1] = 1       Wrote in 1.52 s
          ...
          Time [100] = 100   Elapsed time 205.35 s
      
      Updated:
          Converting 11001 time steps
          Time [0] = 0       Wrote in 1.4 s
          Time [1] = 1       Wrote in 0.07 s
          ...
          Time [100] = 100   Elapsed time 42.4 s
      
      - Speedup by hashing test results from the first conversion step
        instead of checking each time.
      
        Check data on all nodes to avoid problems with incomplete writes.
      
      ------------------------------
      
      BUG: moving mesh detection failed for foamToEnsightParts
      
      - adjusted to agree with updated foamToEnsight
      
      ------------------------------
      
      Note:
      
      - foamToEnsightParts (serial) still has about twice the throughput of
        foamToEnsight.
      0c168c43
  11. Sep 20, 2016
  12. Sep 16, 2016
    • Mark Olesen's avatar
      ENH: more flexible selection/naming for ddt2 FO (issue #224) · b4d83b8f
      Mark Olesen authored
      - bugfix (empty patches), and added detection of steady-state
        scheme.
      
      Caveat: when called via execFlowFunctionObjects will always produce a
        zero field, since the oldTime field is not available for this mode.
      b4d83b8f
    • Mark Olesen's avatar
      ENH: runTime calculation of zeroGradient volume fields (issue #235) · 3008d80b
      Mark Olesen authored
      Extrapolate internal field to walls for post-processing.
      Uses as new syntax for handling the naming of multiple fields.
      
      The input fields are selected via a wordReList.
      For example,
      
          fields      (U "(T|k|epsilon|omega)");
      
      The names of the resulting output fields use placeholder tokens for
      flexibility. For example,
      
          result      zeroGradient(@@);
      
      The '@@' placeholder is replaced by the name of the input field.
      Eg,
          fields      (U T);
          result      zeroGradient(@@);
      ->  zeroGradient(U), zeroGradient(T)
      
      Or,
          fields      (U T);
          result      @@nearWall;
      ->  UnearWall, TnearWall
      
      NOTE:
          The function object will skip over fields that only have
          processor, empty, zeroGradient patches. The operation does not
          make much sense for these, and it avoids inadvertently
          re-processing fields twice.
      3008d80b
  13. Sep 14, 2016
  14. Sep 13, 2016
    • Mark Olesen's avatar
      ENH: expand data mask for foamToEnsight (issue #231) · 9de4a758
      Mark Olesen authored
      - Default is a width of 8 characters, but this can be extended up to 31
        characters via the '-width' command-line option.
      
      - Now use a similar structure as foamToEnsightParts for the masking.
        This reduces the clutter within the directory, makes it easier to
        selectively delete some time steps (using shell commands).
      
      - Added in a "time" information data in each sub-directory to
        make it possible to reconstruct the case file with an external
        script.
      
      - Conversion of cloud data should now also work in parallel
        (may need more testing).
      
      - Support binary output for cloud data.
      
      - Better avoidance of illegal ensight variable names.
        But still partially incomplete (due to patch fields).
      
      ==================================================
      Example of NEW file structure:
      
          EnSight/verticalChannel.case        # case name
          EnSight/geometry                    # for non-moving geometry
      
          EnSight/data/                       # time-varying data
          EnSight/data/00000000/
          EnSight/data/00000001/
          ...
      
        Fields are stored by name within the data/********/ directories:
      
          EnSight/data/00000001/time          # human-readable time info
          EnSight/data/00000001/U
          EnSight/data/00000001/p
          ...
          EnSight/data/00000001/geometry      # for moving geometry
      
        Clouds are stored at the next sub-directory level:
      
          EnSight/data/00000001/lagrangian/<cloudName>/positions
          EnSight/data/00000001/lagrangian/<cloudName>/U
          ...
      
      ==================================================
      The old structure was significantly more cluttered:
      
          EnSight/verticalChannel.case
          EnSight/verticalChannel.0000.mesh
          EnSight/verticalChannel.0001.p
          EnSight/verticalChannel.0001.<cloudName>
          EnSight/verticalChannel.0001.<cloudName>.U
      
      ==================================================
      9de4a758
    • Mark Olesen's avatar
      COMP: CGAL rules should use lib64/ (fixes #234) · d5692462
      Mark Olesen authored
      - 64-bit builds of gcc/mpfr/gmp use lib64/ for their installation path.
        Use this for the wmake rules as well.
      d5692462
    • Mark Olesen's avatar
      BUG: metisDecomp compile failure for WM_DP (closes #232) · 04300070
      Mark Olesen authored
      - spurious use of floatScalar instead of scalar for processor weights.
      
      STYLE: partially updated dummy metis.h to reflect metis-5.1.0 API
      04300070
  15. Sep 08, 2016
  16. Sep 07, 2016
  17. Sep 06, 2016
  18. Sep 02, 2016