GitLab

- the gcc c++/9 includes now inline strncpy, which obliterates
  the previous method of suppressing the warning.
  Now simply allocate additional space for the nul character.

COMP: silence some icc warnings

COMP: backport of updates for gcc-92 compilation

See merge request !336

- indexing error in the output of values resulted in uniform output in
  most cases.

- allocation error for on-the-fly triangulation

ENH: changed decomposed storage from DynamicList to plain faceList for
clearer allocation control and better overhead

BUG: add switch for nu:DphitEff in kEpsilonPhitF (fixes #1560)

Closes #1560

See merge request !329

    Including `nu` in `DphitEff` even though it is not present in (LUU:Eq. 17)
    provided higher level of resemblance to benchmarks for the tests considered,
    particularly for the peak skin friction (yet, pressure-related predictions
    were unaffected). Users can switch off `nu` in `DphitEff` by using
    `includeNu` entry in `kEpsilonPhitFCoeffs` in order to follow the
    reference paper thereat. `includeNu` is left `true` by default.
    See GitLab issue #1560,

  LUU: Laurence, D. R., Uribe, J. C., & Utyuzhnikov, S. V. (2005).

BUG: wrong bounding of sensitivity contituents in case of many control boxes (Fixes #1549)

Closes #1549

See merge request !325

When more than one volumetric B-Splines control boxes are present, the
sensitivity constituents corresponding to the non-active design
variables were not bounded(zeroed) correctly. The resultant
sensitivities, used in the optimization, were bounded correctly, so this
was more a bug pertaining to the output file of the sensitivities rather
than a functional one.

BUG: continuation of updateMethods with empty activeDesignVariables (#1540)

See merge request !322

When activeDesignVariables are not set explicitly, all design variables
are treated as active. These were allocated properly when starting from
0 but not when starting from an intermediate optimisation cycle
(e.g. running 5 optimisation cycles, stopping and restarting).

TUT: added a new tutorial including the restart of an optimisation run
to help identify future regression

BUG: writeMorpherCPs expects a controlBoxes entry (#1538)

See merge request !321

The controlBoxes wordList was removed from NURBS3DVolume in the
pre-release phase but writeMorpherCPs was not updated accordingly.

TUT: added the invocation of writeMorpherCPs in one of the tutotials to
help identify future regression

BUG: Wrong FatalIOError message in displacementMethod and optMeshMovement (#1537)

See merge request !320

- The core of the FatalIOError message was not printed due to exiting
  with FatalError instead of FatalIOError
- Changed the TypeName in all derived classes of displacementMethod so
  that the toc printed by the FatalIOError corresponds to what the user
  should add in dynamicMeshDict

    When a contact resistance is used the T field on each coupled
    patch is different due to the thermal resistance. Thus, instead
    of solving for a unique Tw at the wall, we solve for Tw1 at one side
    then, the Tnbr internal becomes Tw2, which is the T of the nbr
    patch.

Many possibilities:
- use as a simple calculator with vectors, tensors etc.
- test validity of expression syntax

As a calculator:

    foamCalc  '(vector(1,2,3) ^ vector(4,5,6)) * sqrt(34)'

The same, but with debugging:

    foamCalc -debug-switch fieldExpr=6 \
        'mag((vector(1,2,3) ^ vector(4,5,6))) * sqrt(34)'

- previously just reported gcc/clang versions, but these are not
  necessarily the ones actually being used (eg, clang-9 vs clang).
  Now use the path from `wmake -show-path-cxx` to improve the accuracy,
  and also support other compiler types.

Integration inter track foam

See merge request !310

1) New skewCorrectedSnGrad for non-orthogonal and skewness corrector
2) New freeSurfacePressure and freeSurfacePressure working with
   interfaceTrackingFvMesh
3) New interfaceTrackingFvMesh

- now use debug 2 for scanner and debug 4 for parser.
  Provided better feedback about what is being parsed (debug mode)

- relocate debug application to applications/tools/foamExprParserInfo

New VOF multiphaseStabilizedTurbulence fvOption

See merge request !316

See GL #1433

Applies corrections to turbulence kinetic energy equation and turbulence
viscosity field for incompressible multiphase flow cases.

Turbulence kinetic energy is over-predicted in VOF solvers at the phase
interface and throughout the water column in nearly-potential flow regions
beneath surface waves.

This fvOption applies corrections based on the references:

    Buoyancy source term in turbulence kinetic energy equation:

        Devolder, B., Rauwoens, P., and Troch, P. (2017).
        Application of a buoyancy-modified k-w SST turbulence model to
        simulate wave run-up around a monopile subjected to regular waves
        using OpenFOAM.
        Coastal Engineering, 125, 81-94.

    Correction to turbulence viscosity field:

        Larsen, B.E. and Fuhrman, D.R. (2018).
        On the over-production of turbulence beneath surface waves in
        Reynolds-averaged Navier-Stokes models
        J. Fluid Mech, 853, 419-460

Exampl...