- renamed 'core/' -> 'base/' to avoid gitignore masking when re-adding
  files

- rename 'nas/' to 'nastran/' for more clarity

- relocated OBJstream from surfMesh to fileFormats

STYLE: remove unused parseNASCoord. Was deprecated 2017-09

Kutalmış Berçin authored 5 years ago and Andrew Heather committed 5 years ago

  - `tensor` and `tensor2D` returns complex eigenvalues/vectors
  - `symmTensor` and `symmTensor2D` returns real eigenvalues/vectors
  - adds new test routines for eigendecompositions
  - improves numerical stability by:
    - using new robust algorithms,
    - reordering the conditional branches in root-type selection

Kutalmış Berçin authored 5 years ago and Andrew Heather committed 5 years ago

  - ensures each Tensor-container operates for the following base types:
    - floatScalar
    - doubleScalar
    - complex

  - adds/improves test applications for each container and base type:
    - constructors
    - member functions
    - global functions
    - global operators

  - misc:
    - silently removes `invariantIII()` for `tensor2D` and `symmTensor2D`
      since the 3rd invariant does not exist for 2x2 matrices
    - fixes `invariantII()` algorithm for `tensor2D` and `symmTensor2D`
    - adds `Cmpt` multiplication to `Vector2D` and `Vector`
    - adds missing access funcs for symmetric containers
    - improves func/header documentations

Kutalmış Berçin authored 5 years ago and Andrew Heather committed 5 years ago

  - replaces floating-point equal comparisons in
    `linearEqn`, `quadraticEqn`, and `cubicEqn`,
  - ensures `quadraticEqn` and `cubicEqn` can return `complex` roots,
  - reorders if-branches in `quadraticEqn` and `cubicEqn` to avoid
    zero-equal comparison,
  - adds Kahan's cancellation-avoiding algorithm into `quadraticEqn` and
    `cubicEqn` for the numerically-sensitive discriminant computation,

  - adds/improves `polynomialEqns` tests:
    * adds Test-linearEqn.C
    * adds Test-quadraticEqn.C
    * improves Test-cubicEqn.C

Mark OLESEN authored 5 years ago and Andrew Heather committed 5 years ago

- includes restructuring and simplification of low-level ensight part
  handling and refactor of backends to improve code reuse.

foamToEnsight
-------------

  * new cellZone support.
    This was previously only possible via a separate foamToEnsightParts
    utility that was not parallelized.

  * support for point fields.

  * `-nearCellValue` option (as per foamToVTK)

  * data indexing now uses values from the time index.
    This is consistent with the ensightWrite function object and
    can help with restarts.

  * existing ensight directories are removed, unless the -no-overwrite
    option is supplied

foamToEnsightParts
------------------
  * now redundant and removed.

ensightOutputSurface (new class)
--------------------------------
  * a lightweight wrapper for point/face references that is tailored
    for the ensightSurfaceWriter. It uses compact face/point information
    and is serial only, since this is the format requirements from the
    surfaceWriter class.

ensightMesh (revised class)
---------------------------
  * now only holds a polyMesh reference, which removes its dependency
    on finiteVolume and allows it to be relocated under fileFormats
    instead of conversion.

Removed classes: ensightParts, ensighPartFaces, ensightPartCells

- these were used by foamToEnsightParts, but not needed anymore.

- simplifies code, covers most cases.
  Can use wmake -show-api or wmakeBuildInfo to query the make rules.

STYLE: Allwmake script adjustments

- use bin/foamEtcFile instead of relying on PATH.
  The make environment may not have the OpenFOAM bin/ in it.

- simpler shell syntax

- provides an indirect access to a sub-section of a list that is
  somewhat less efficient than a Foam::SubList, but supports the
  following:
    * adjustment of its addressing range after construction
    * recovery of the original, underlying list at any time

  This can be more convenient for some coding cases.
  For example,

      template<class Addr>
      void renumberFaces(IndirectListBase<face, Addr>& faces, ...);

  which can be called for

      * Specific faces:
        UIndirectList<face>(mesh.faces(), facesToChange)

      * A sub-range of faces:
        IndirectSubList<face>(mesh.faces(), pp.range())

      * All faces:
        IndirectSubList<face>(mesh.faces())

CONFIG: added IndirectListsFwd.H with some common forwarding

  - refactors the corresponding tutorial by removing redundant files and items:
    compressible/rhoCentralFoam/biconic25-55Run35

COMP: use generated methods in a few more places

- consistent way of writing "patch" + Foam::name(id) etc.

- remove (unused) Istream constructors, prune some unused methods,
  rationalize write() vs writeDict().
  Deprecate inconsistent construction order.

- handle empty names for ".ftr" surface patches (for plain triSurface
  format) with double-quoted strings for more reliable streaming.
  Written on a single line.

  This is _backward_ compatible, but if users have been parsing these
  files manually, they will need to adjust their code.

Previously:
```
  (
  frt-fairing:001%1
  empty

  windshield:002%2
  empty
  ...
  )
```

Updated (with example handling of empty name):
```
  (
  frt-fairing:001%1 empty

  windshield:002%2 ""
  ...
  )
```

Vaggelis Papoutsis authored 5 years ago and Andrew Heather committed 5 years ago

The controlBoxes wordList was removed from NURBS3DVolume in the
pre-release phase but writeMorpherCPs was not updated accordingly.

TUT: added the invocation of writeMorpherCPs in one of the tutotials to
help identify future regression

Many possibilities:
- use as a simple calculator with vectors, tensors etc.
- test validity of expression syntax

As a calculator:

    foamCalc  '(vector(1,2,3) ^ vector(4,5,6)) * sqrt(34)'

The same, but with debugging:

    foamCalc -debug-switch fieldExpr=6 \
        'mag((vector(1,2,3) ^ vector(4,5,6))) * sqrt(34)'

Zeljko Tukovic authored 5 years ago and Andrew Heather committed 5 years ago

1) New skewCorrectedSnGrad for non-orthogonal and skewness corrector
2) New freeSurfacePressure and freeSurfacePressure working with
   interfaceTrackingFvMesh
3) New interfaceTrackingFvMesh

- now use debug 2 for scanner and debug 4 for parser.
  Provided better feedback about what is being parsed (debug mode)

- relocate debug application to applications/tools/foamExprParserInfo

sergio authored 5 years ago and Andrew Heather committed 5 years ago

1) rPolynomial Eq of State
2) externalForce and softWall in rigidBodyDynamics

INT: Several minor bug fixes plus

- follows the principle of least surprise if the expansion behaviour
  for #eval and expressions (eg, exprFixedValue) are the same.  This
  is possible now that we harness the regular stringOps::expand()
  within exprString::expand()

- the PDRsetFields utility processes a set of geometrical obstructions
  to determine the equivalent blockage effects.

  These fields are necessary inputs for PDRFoam calculations.

  After setting up the geometries, the -dry-run option can be used to
  generate a VTK file for diagnosis and post-processing purposes.

- this is an initial release, with improvements slated for the future.

NOTE
  - the field results may be less than fully reliable when run in
    single-precision. This howver does not represent a realistic
    restriction since the prepared fields target a combustion
    application which will invariably be double-precision.

- remove unused local functions from volumeExprDriver

- reuse more of stringOps expansions to reduce code and improve the
  syntax flexiblity.

  We can now embed "pre-calculated" values into an expression.
  For example,

       angle       35;
       valueExpr   "vector(${{cos(degToRad($angle))}}, 2, 3)";

  and the ${{..}} will be evaluated with the regular string evaluation
  and used to build the entire expression for boundary condition
  evaluation.

  Could also use for fairly wild indirect referencing:

       axis1   (1 0 0);
       axis2   (0 1 0);
       axis3   (0 0 1);
       index   100;
       expr   "$[(vector) axis${{ ($index % 3) +1 }}] / ${{max(1,$index)}}";

- finds beg/end indices of string trimmed of leading/trailing whitespace