Adding binary read option for MappedFile.
Using these options for acousticFoam tutorial

tutorial.

1) Adding new acousticFoam
2) New KirchhoffShell finite area model for plates
3) New clamped BC for plate
4) New acoustive wave transmissive BC
5) New faOption source based on mappedFile through boundaryData

	1) New acousticFoam
	2) New KirchhoffShell vibrating shell model
	3) New coupled Bc for vibrating shell and acousticFoam
	4) New faOption source with external table
	5) Mew clamped BC for vibrating shell

1) Adding nIter to jouleHeatingSource
2) Adding skewCorrectedEdgeInterpolation
3) Updating thermalShell constructor

In some geometries the inv of symmetric matrix for leastSquares
seems to become ill-conditioned, as work around we add a
ROOTSMALL value as initilization. This is WIP

The heat transfer from the fa to fv was moved from the thermalShell
to faOption. An option contact resistance was added to the model.
Now, in order to have heat flux from the shell to the 3D mesh
the contactHeatFluxSpurce faOption is needed, otherwise it will
be adiabatic

Changes in handling faOptions in shellThermo model

ENH: Added new function object to compute the Proudman acoustic power

See merge request !303

ENH: Added new limitFields function object

See merge request !304

Vaggelis Papoutsis authored 5 years ago and Mark OLESEN committed 5 years ago

- Failed due to double*Matrix<float> multiplication.

Style changes

- use SquareMatrix with Identity on construction

- use Zero in constructors

- remove trailing space and semi-colons

- this regression caused dynamic code with includes to fail since they
  often have -I$(LIB_SRC)/...  content

- finds beg/end indices of string trimmed of leading/trailing whitespace

- skip processing OSspecific/MSwindows since this can cause duplicate
  doxygen entries

STYLE: adjust formatting in code templates

STYLE: use std::string methods without extra qualifications

- ensure that the updateControl is "non-sticky" on re-read,
  even if we do not support runtime-modifiable here

STYLE: add syntax example (wingMotion), but with updateInterval 1

- synchronize the scalar interval value with the integer version.
  This ensures that the interval() method returns the correct
  representative value.

- added clear() method to reset to 'always' (pass-through)

This reverts commit 677e3142.

- ensure that the updateControl is "non-sticky" on re-read,
  even if we do not support runtime-modifiable here

STYLE: add syntax example (wingMotion), but with updateInterval 1

ENH: New adjont shape optimisation functionality

See merge request Development/openfoam!307

The adjoint library is enhanced with new functionality enabling
automated shape optimisation loops.  A parameterisation scheme based on
volumetric B-Splines is introduced, the control points of which act as
the design variables in the optimisation loop [1, 2].  The control
points of the volumetric B-Splines boxes can be defined in either
Cartesian or cylindrical coordinates.

The entire loop (solution of the flow and adjoint equations, computation
of sensitivity derivatives, update of the design variables and mesh) is
run within adjointOptimisationFoam. A number of methods to update the
design variables are implemented, including popular Quasi-Newton methods
like BFGS and methods capable of handling constraints like loop using
the SQP or constraint projection.

The software was developed by PCOpt/NTUA and FOSS GP, with contributions from

Dr. Evangelos Papoutsis-Kiachagias,
Konstantinos Gkaragounis,
Professor Kyriakos Giannakoglou,
Andy Heather

[1] E.M. Papoutsis-Kiachagias, N. Magoulas, J. Mueller, C. Othmer,
K.C.  Giannakoglou: 'Noise Reduction in Car Aerodynamics using a
Surrogate Objective Function and the Continuous  Adjoint Method with
Wall Functions', Computers & Fluids, 122:223-232, 2015

[2] E. M. Papoutsis-Kiachagias, V. G. Asouti, K. C. Giannakoglou,
K.  Gkagkas, S. Shimokawa, E. Itakura: ‘Multi-point aerodynamic shape
optimization of cars based on continuous adjoint’, Structural and
Multidisciplinary Optimization, 59(2):675–694, 2019

- when using VTK from ParaView sources it can better to tag them as
  such, but simultaneously not mask the ParaView with hardware
  rendering.

  The additional ParaView_MESA_DIR variable allows this.
  The balance of library and path setup is unaffected by this.

DOC: update doc/BuildIssues

ENH|BUG: Misc

See merge request !305

  - `Pkt` was directed to `GName` to allow wall functions
     are usable by kkLOmega model
  - `Pkt` was changed to a non-const object, so that omegaWallFunc
    can modify `Pkt` at the wall, if need be.
  - Elementwise backward compatibility was checked by
    pimpleFoam/RAS/ellipsekkLOmega
  - New implementation was checked by changing omega:hole boundary
    in pimpleFoam/RAS/ellipsekkLOmega to omegaWallFunction

    QRMatrix (i.e. QR decomposition, QR factorisation or orthogonal-triangular
    decomposition) decomposes a scalar/complex matrix \c A into the following
    matrix product:

    \verbatim
        A = Q*R,
    \endverbatim

    where
     \c Q is a unitary similarity matrix,
     \c R is an upper triangular matrix.

Usage
    Input types:
     - \c A can be a \c SquareMatrix<Type> or \c RectangularMatrix<Type>

    Output types:
     - \c Q is always of the type of the matrix \c A
     - \c R is always of the type of the matrix \c A

    Options for the output forms of \c QRMatrix (for an (m-by-n) input matrix
    \c A with k = min(m, n)):
     - outputTypes::FULL_R:     computes only \c R                   (m-by-n)
     - outputTypes::FULL_QR:    computes both \c R and \c Q          (m-by-m)
     - outputTypes::REDUCED_R:  computes only reduced \c R           (k-by-n)

    Options where to store \c R:
     - storeMethods::IN_PLACE:        replaces input matrix content ...